Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ESCO1	114799	hgsc.bcm.edu	37	18	19153599	19153600	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	ESCO1	NM_052911	exon4	c.1206_1207del	p.402_403del	.	.	131.0	17.0	138.0	0.0	.	89	.	Atlas-Indel
TPRX1	284355	hgsc.bcm.edu	37	19	48305613	48305624	+	In_Frame_Del	DEL	TTGGGCCTGAGA	TTGGGCCTGAGA	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	TTGGGCCTGAGA	TTGGGCCTGAGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	TPRX1,NS,carcinoma,0,1	TPRX1	NM_198479	exon2	c.645_656del	p.215_219del	.	.	44.0	22.0	38.0	0.0	.	46	.	Atlas-Indel
EIF2D	1939	hgsc.bcm.edu	37	1	206781611	206781612	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	EIF2D	NM_006893	exon4	c.400_401del	p.134_134del	.	.	813.0	184.0	589.0	0.0	.	42	.	Atlas-Indel
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTG	rs76478261		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAG	p.G306delinsQG	.	.	85.0	30.0	55.0	0.0	.	46	.	Atlas-Indel
ARSB	411	hgsc.bcm.edu	37	5	78251240	78251240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_198709	exon5	c.A776G	p.Q259R	TTGTCTTGGATAA	.	98.0	39.0	146.0	0.0	.	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	37	1	227335123	227335123	+	Silent	SNP	G	G	A	rs139987030	byfrequency	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_003607	exon7	c.C831T	p.Y277Y	TTCTCCGTAAAGC	.	270.0	70.0	132.0	0.0	0.000	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	76.0	4.0	76.0	1.0	.	0	2	Atlas-SNP
COX1	5742	hgsc.bcm.edu	37	MT	7368	7368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	ENST00000361624	exon1	c.T1465C	p.S489P	GAACCCTCCATAA	.	13.0	4.0	30.0	0.0	.	.	.	Atlas-SNP
SF3A2	8175	hgsc.bcm.edu	37	19	2248077	2248077	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_007165	exon9	c.C927T	p.H309H	CGTCCACCCCCCA	.	25.0	15.0	14.0	0.0	.	.	.	Atlas-SNP
KDM5B	10765	hgsc.bcm.edu	37	1	202710494	202710494	+	Splice_Site	SNP	C	C	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006618	exon20	c.2945+1G>T	.	TTTTCACCTGGCC	.	75.0	17.0	44.0	0.0	.	.	.	Atlas-SNP
AGAP6	414189	hgsc.bcm.edu	37	10	51768543	51768543	+	Missense_Mutation	SNP	T	T	C	rs76153144		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	AGAP6,NS,carcinoma,0,3	AGAP6	NM_001077665	exon8	c.T658C	p.S220P	ATTCCATCGACTC	.	68.0	4.0	79.0	0.0	0.500	0	3	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232576664	232576664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001099285	exon3	c.A185G	p.E62G	GTGGGGAGGAAGA	.	82.0	18.0	53.0	0.0	.	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	37	2	198949565	198949565	+	Missense_Mutation	SNP	G	G	A	rs201197388	bycluster	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	PLCL1_ENST00000428675,right_upper_lobe,carcinoma,0,2	PLCL1_ENST00000428675	NM_006226	exon2	c.G1324A	p.V442I	CGAAGCGTTGAAC	.	122.0	39.0	133.0	0.0	0.001	0	2	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	37	9	32632961	32632961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	TAF1L,rectum,carcinoma,0,2	TAF1L	NM_153809	exon1	c.C2617T	p.R873C	CTGTGCGTTTGAA	.	372.0	115.0	331.0	0.0	.	0	2	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	37	20	16385486	16385486	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001199865	exon17	c.C1756T	p.L586L	CAGACAGGTTCTC	.	74.0	12.0	59.0	0.0	.	.	.	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	37	16	28507412	28507412	+	Silent	SNP	A	A	C	rs62034315		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_018690	exon2	c.A1050C	p.G350G	CTCAGGAGGGGAG	.	24.0	7.0	16.0	0.0	0.500	.	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	37	20	56137903	56137903	+	Silent	SNP	T	T	C	rs201469307	by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002591	exon4	c.T558C	p.D186D	GGGCGATGGGGAG	.	133.0	33.0	149.0	0.0	0.000	.	.	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	37	7	72861685	72861685	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_032408	exon16	c.T3753C	p.S1251S	GTCCTCAGAAGCA	.	58.0	25.0	87.0	0.0	.	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50278479	50278479	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005215	exon2	c.C147T	p.A49A	TGATGCCGTCACA	.	63.0	12.0	94.0	0.0	.	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81227824	81227824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_152446	exon16	c.C2510T	p.A837V	CAAGCTGCATCAA	.	144.0	14.0	138.0	0.0	.	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	37	MT	9637	9637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	ENST00000362079	exon1	c.T431C	p.I144T	TATCAATCACCTG	.	24.0	11.0	38.0	0.0	.	.	.	Atlas-SNP
KDM5A	5927	hgsc.bcm.edu	37	12	432911	432911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001042603	exon15	c.G2005A	p.V669I	CAGGAACAAGTTC	.	316.0	62.0	177.0	0.0	.	.	.	Atlas-SNP
POU4F3	5459	hgsc.bcm.edu	37	5	145719235	145719235	+	Missense_Mutation	SNP	C	C	A	rs145218099	alternate_allele	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002700	exon2	c.C245A	p.T82N	ACCATACCATGAG	.	68.0	31.0	94.0	0.0	.	.	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	37	6	131931259	131931259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015979	exon12	c.C1022T	p.S341L	TGACTTGAGAGAT	.	108.0	73.0	106.0	0.0	.	.	.	Atlas-SNP
SF3A2	8175	hgsc.bcm.edu	37	19	2248071	2248071	+	Silent	SNP	C	C	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_007165	exon9	c.C921G	p.G307G	TCCTGGCGTCCAC	.	25.0	7.0	15.0	0.0	.	.	.	Atlas-SNP
GGN	199720	hgsc.bcm.edu	37	19	38876405	38876405	+	Silent	SNP	A	A	G	rs376498232		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	GGN,NS,malignant_melanoma,0,1	GGN	NM_152657	exon3	c.T1497C	p.A499A	AGCTGGAGCCGGG	.	28.0	7.0	30.0	1.0	.	0	1	Atlas-SNP
ARPC2	10109	hgsc.bcm.edu	37	2	219103519	219103519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005731	exon5	c.A401C	p.E134A	AAGAAGAGGGCAA	.	306.0	89.0	233.0	0.0	.	.	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	37	12	6777072	6777072	+	Silent	SNP	C	C	T	rs78573212		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ZNF384_ENST00000361959,caecum,carcinoma,0,12	ZNF384_ENST00000361959	NM_001135734	exon11	c.G1542A	p.Q514Q	CTGTTGCTGCTGC	.	44.0	5.0	23.0	0.0	.	0	12	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	37	22	32111642	32111642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_173566	exon4	c.C2183T	p.S728L	CAGTTTGAAGAGG	.	113.0	47.0	149.0	0.0	.	.	.	Atlas-SNP
IL4R	3566	hgsc.bcm.edu	37	16	27353570	27353570	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_000418	exon4	c.C199T	p.L67L	GTTTTTCTGCTCT	.	151.0	8.0	113.0	0.0	.	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505876	195505876	+	Missense_Mutation	SNP	G	G	C	rs199716248		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12575G	p.P4192R	GGAAGAGGGGTGG	.	88.0	5.0	90.0	1.0	.	0	1	Atlas-SNP
