Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
FAM108A1	81926	hgsc.bcm.edu	37	19	1881397	1881397	+	Silent	SNP	T	T	G	rs200867680	byfrequency	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	FAM108A1,NS,carcinoma,+2,3	FAM108A1	NM_031213	exon2	c.A169C	p.R57R	AGGCTCTCAGGGT	.	18.0	5.0	12.0	1.0	0.016	+2	3	Atlas-SNP
TXNDC5	81567	hgsc.bcm.edu	37	6	7883446	7883446	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_030810	exon10	c.G1230A	p.E410E	ACTGTGCTCACTG	.	98.0	5.0	81.0	0.0	.	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547084	132547084	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_015409	exon47	c.G8172A	p.Q2724Q	GCAGCAGCAGCAA	.	92.0	7.0	92.0	0.0	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	23.0	4.0	46.0	0.0	.	.	.	Atlas-SNP
SRP68	6730	hgsc.bcm.edu	37	17	74046599	74046599	+	Missense_Mutation	SNP	G	G	T	rs148814451	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	SRP68,NS,carcinoma,-1,1	SRP68	NM_014230	exon9	c.C987A	p.S329R	TTCTTCGCTTTCA	.	63.0	5.0	78.0	0.0	.	-1	1	Atlas-SNP
SLC25A5	292	hgsc.bcm.edu	37	X	118602491	118602491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001152	exon1	c.G13A	p.A5T	GATGCCGCTGTGT	.	168.0	26.0	176.0	0.0	.	.	.	Atlas-SNP
QARS	5859	hgsc.bcm.edu	37	3	49139869	49139869	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005051	exon6	c.C553T	p.L185L	TCTCCAGATCAGC	.	91.0	10.0	144.0	0.0	.	.	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	37	X	101971349	101971349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_138437	exon4	c.G1552T	p.E518X	ATTCCCGAAGAGG	.	88.0	4.0	105.0	0.0	.	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	37	12	132547147	132547147	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_015409	exon47	c.G8235A	p.Q2745Q	GCAGCAGCAGCAA	.	149.0	10.0	150.0	0.0	.	.	.	Atlas-SNP
FEM1C	56929	hgsc.bcm.edu	37	5	114860823	114860823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	FEM1C,NS,carcinoma,0,1	FEM1C	NM_020177	exon3	c.G1036A	p.A346T	AGACAGCGCCTCT	.	54.0	4.0	72.0	0.0	.	0	1	Atlas-SNP
C17orf80	55028	hgsc.bcm.edu	37	17	71232215	71232215	+	Silent	SNP	A	A	G	rs372656983	bycluster	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001100621	exon3	c.A594G	p.Q198Q	TGTACAAACTACC	.	219.0	33.0	164.0	0.0	.	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	37	16	2358479	2358479	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001089	exon11	c.C1257T	p.A419A	GAGCTGGGCTCCC	.	61.0	13.0	65.0	0.0	.	.	.	Atlas-SNP
OGT	8473	hgsc.bcm.edu	37	X	70793562	70793562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_181672	exon22	c.A3059G	p.Y1020C	GGCTCTATCTACA	.	69.0	13.0	85.0	0.0	.	.	.	Atlas-SNP
XPNPEP2	7512	hgsc.bcm.edu	37	X	128886308	128886308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_003399	exon10	c.A1004G	p.E335G	TCTATGAAATGAT	.	113.0	21.0	112.0	0.0	.	.	.	Atlas-SNP
