Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
HEPHL1	341208	hgsc.bcm.edu	37	11	93796882	93796882	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	HEPHL1	NM_001098672	exon3	c.623delA	p.K208fs	.	.	60.0	11.0	75.0	0.0	.	144	.	Pindel,Atlas-Indel
TAF7	6879	hgsc.bcm.edu	37	5	140699523	140699523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005642	exon1	c.G89C	p.R30T	ACTGCCCTTCTCA	.	114.0	35.0	114.0	0.0	.	.	.	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6707254	6707254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001273	exon12	c.C1698G	p.H566Q	CTGACAGTGCAGC	.	95.0	4.0	102.0	0.0	.	.	.	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	37	15	91455346	91455346	+	Missense_Mutation	SNP	G	G	A	rs146996561		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_006122	exon14	c.G2183A	p.R728H	GGCACCGCACGCT	.	53.0	4.0	73.0	0.0	0.000	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39818746	39818746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_012090	exon40	c.C5081T	p.S1694L	TAACTTCAGTAGG	.	84.0	9.0	98.0	0.0	.	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC	.	12.0	3.0	11.0	0.0	.	0	2	Atlas-SNP
STRN	6801	hgsc.bcm.edu	37	2	37094974	37094974	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	STRN,extremity,malignant_melanoma,0,1	STRN	NM_003162	exon12	c.T1530C	p.Y510Y	GAATGTATAGATA	.	23.0	4.0	28.0	0.0	.	0	1	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	37	3	156232196	156232196	+	Silent	SNP	G	G	A	rs370190413		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KCNAB1_ENST00000471742,colon,carcinoma,+1,2	KCNAB1_ENST00000471742	NM_172160	exon9	c.G702A	p.A234A	CATGGCGATGTAC	.	80.0	11.0	83.0	0.0	.	+1	2	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	NRAS,NS,haematopoietic_neoplasm,0,2068	NRAS	NM_002524	exon3	c.C181A	p.Q61K	CTTCTTGTCCAGC	.	102.0	17.0	85.0	0.0	.	0	2068	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	37	5	140605294	140605294	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_018934	exon1	c.G2217A	p.V739V	GGACGTGAGCGGC	.	73.0	18.0	100.0	0.0	.	.	.	Atlas-SNP
AP4B1-AS1	100287722	hgsc.bcm.edu	37	1	114423856	114423856	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	.	.	.	.	AGGAAATGTAGCT	.	93.0	15.0	93.0	0.0	.	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	37	21	47700450	47700450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003906	exon3	c.C1483G	p.H495D	CTTTATGCAAACT	.	441.0	51.0	339.0	0.0	.	.	.	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	37	17	40500474	40500474	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003150	exon2	c.C61G	p.L21V	TGTAGAGCTGATG	.	52.0	7.0	63.0	0.0	.	.	.	Atlas-SNP
CSNK1G2-AS1	255193	hgsc.bcm.edu	37	19	1953897	1953897	+	RNA	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	.	.	.	.	CTCAGAGGCCGGC	.	61.0	6.0	48.0	0.0	.	.	.	Atlas-SNP
MTA3	57504	hgsc.bcm.edu	37	2	42836672	42836672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_020744	exon4	c.A265G	p.R89G	AAACATAGGGAAC	.	128.0	13.0	156.0	0.0	.	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137729063	137729063	+	Splice_Site	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_016604	exon9	c.2831+2T>C	.	CGGAGGTACCCAA	.	95.0	20.0	107.0	0.0	.	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52537884	52537884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_015136	exon9	c.G988T	p.A330S	CGGTCTGCCACTT	.	76.0	5.0	95.0	0.0	.	.	.	Atlas-SNP
MURC	347273	hgsc.bcm.edu	37	9	103340547	103340547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001018116	exon1	c.C122A	p.A41D	AAGTAGCCTCCAT	.	81.0	10.0	93.0	0.0	.	.	.	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	37	5	140605281	140605281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_018934	exon1	c.A2204G	p.H735R	CAGGGCATCTGGT	.	59.0	12.0	88.0	0.0	.	.	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	37	19	17988612	17988612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000453	exon6	c.G779C	p.G260A	TGTATGGCGTGAA	.	100.0	22.0	97.0	0.0	.	.	.	Atlas-SNP
SFXN5	94097	hgsc.bcm.edu	37	2	73215427	73215427	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_144579	exon10	c.C585A	p.T195T	AAGGCGGGTGGCT	.	83.0	4.0	88.0	0.0	.	.	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	37	15	45399065	45399065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	DUOX2,colon,carcinoma,-1,1	DUOX2	NM_014080	exon15	c.C1796T	p.A599V	GTGATGGCAAAAC	.	128.0	26.0	113.0	0.0	.	-1	1	Atlas-SNP
ZFAT	57623	hgsc.bcm.edu	37	8	135615099	135615099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	ZFAT_ENST00000377838,NS,carcinoma,0,2	ZFAT_ENST00000377838	NM_020863	exon6	c.C863A	p.A288D	AGGTGGGCCTGCA	.	146.0	6.0	118.0	1.0	.	0	2	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA	.	60.0	26.0	61.0	0.0	.	0	932	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	37	17	5308484	5308484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002532	exon6	c.G937A	p.A313T	GTACAGCACACGC	.	65.0	8.0	67.0	0.0	.	.	.	Atlas-SNP
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	73.0	3.0	79.0	1.0	.	0	1	Atlas-SNP
CEP104	9731	hgsc.bcm.edu	37	1	3740039	3740039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CEP104,NS,carcinoma,+1,1	CEP104	NM_014704	exon19	c.G2452A	p.A818T	AAACAGCCTCACT	.	100.0	12.0	126.0	1.0	.	+1	1	Atlas-SNP
LRRC57	255252	hgsc.bcm.edu	37	15	42839488	42839488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_153260	exon4	c.G463A	p.V155I	CGATGACTTGCAG	.	47.0	8.0	53.0	0.0	.	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	37	6	145095443	145095443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	UTRN,NS,carcinoma,0,1	UTRN	NM_007124	exon59	c.C8575T	p.R2859C	AATGTACGTTTTT	.	147.0	19.0	122.0	0.0	.	0	1	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC	.	16.0	2.0	10.0	0.0	.	0	1	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	37	12	94631464	94631464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005761	exon10	c.C2005T	p.P669S	ATTGAGCCACAGA	.	61.0	11.0	65.0	0.0	.	.	.	Atlas-SNP
