Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CLN5	1203	hgsc.bcm.edu	37	13	77574850	77574851	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CLN5	NM_006493	exon4	c.970_971insT	p.V324fs	.	.	84.0	15.0	120.0	0.0	.	32	.	Pindel,Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885585	29885586	+	In_Frame_Ins	INS	-	-	AAGTCCCCTGAGAAGGCC	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.,1	NEFH	NM_021076	exon4	c.1956_1957insAAGTCCCCTGAGAAGGCC	p.A652delinsAKSPEKA	.	.	153.0	44.0	127.0	0.0	.	178	.	Atlas-Indel
TRPC7	57113	hgsc.bcm.edu	37	5	135692524	135692524	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001167576	exon2	c.G552A	p.L184L	CTTGAGCAGCAGG	.	66.0	28.0	75.0	0.0	.	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	37	1	34209037	34209037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_052896	exon14	c.G1897T	p.V633F	TGATGACCAGGAA	.	55.0	12.0	57.0	0.0	.	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58384415	58384415	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001144989	exon3	c.C2343T	p.F781F	TTCAGCGAAAGAT	.	87.0	5.0	97.0	0.0	.	.	.	Atlas-SNP
GUK1	2987	hgsc.bcm.edu	37	1	228335314	228335314	+	Splice_Site	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001242839	exon6	c.391-2A>G	.	CTTTTTAGGAGCA	.	96.0	35.0	57.0	0.0	.	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130128890	130128890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_153264	exon19	c.A4580G	p.K1527R	GACAAAAGGGCTC	.	95.0	4.0	106.0	0.0	.	.	.	Atlas-SNP
CNOT3	4849	hgsc.bcm.edu	37	19	54651887	54651887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_014516	exon11	c.C899T	p.P300L	AGTCTCCAGCCAA	.	158.0	30.0	115.0	0.0	.	.	.	Atlas-SNP
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271711	45271711	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001013632	exon2	c.C630T	p.F210F	CACCGCGAAGAGC	.	67.0	19.0	66.0	0.0	.	.	.	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	37	12	133779315	133779315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165881	exon6	c.T1043C	p.V348A	AGCTTGTTATACA	.	62.0	6.0	33.0	0.0	.	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216113	45216113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	CDC27_ENST00000531206,caecum,carcinoma,+1,6	CDC27_ENST00000531206	NM_001114091	exon13	c.T1714C	p.S572P	CTGGCGAATTTTT	.	30.0	2.0	30.0	1.0	.	+1	6	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	rs150832622	bycluster;by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC	.	94.0	4.0	30.0	0.0	0.002	.	.	Atlas-SNP
NPR2	4882	hgsc.bcm.edu	37	9	35792698	35792698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003995	exon1	c.G293A	p.G98D	TGTTAGGTCCCGG	.	53.0	17.0	70.0	0.0	.	.	.	Atlas-SNP
IL1RL1	9173	hgsc.bcm.edu	37	2	102955396	102955396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_016232	exon3	c.A161G	p.N54S	AAACAAACAAAAG	.	182.0	38.0	143.0	0.0	.	.	.	Atlas-SNP
SULT1A1	6817	hgsc.bcm.edu	37	16	28619841	28619841	+	Silent	SNP	G	G	T	rs201320226	by1000genomes;alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	SULT1A1,colon,carcinoma,0,1	SULT1A1	NM_177534	exon2	c.C232A	p.R78R	GCACCCGCATGAA	.	67.0	3.0	60.0	0.0	.	0	1	Atlas-SNP
BOD1	91272	hgsc.bcm.edu	37	5	173043252	173043252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001159651	exon1	c.G188A	p.G63D	AAAAGGCCCCGGC	.	25.0	10.0	28.0	0.0	.	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC	.	48.0	3.0	51.0	2.0	.	0	2	Atlas-SNP
LSS	4047	hgsc.bcm.edu	37	21	47642636	47642636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145436	exon4	c.C336A	p.C112X	CACGTGGCAAGTG	.	66.0	6.0	27.0	0.0	.	.	.	Atlas-SNP
TRIM45	80263	hgsc.bcm.edu	37	1	117663450	117663450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145635	exon1	c.G374A	p.S125N	CGTAGGCTCTCCA	.	103.0	26.0	120.0	0.0	.	.	.	Atlas-SNP
TUBBP5	643224	hgsc.bcm.edu	37	9	141071002	141071002	+	RNA	SNP	A	A	G	rs28433994		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	ENSG00000254381,bladder,carcinoma,0,4	ENSG00000254381	.	.	.	.	AGCGCTATATGAC	.	46.0	4.0	29.0	0.0	.	0	4	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A_ENST00000327337	NM_001145475	exon4	c.T3513C	p.L1171L	AGGGGTAAGAGGG	.	193.0	9.0	99.0	2.0	.	0	3	Atlas-SNP
RNF182	221687	hgsc.bcm.edu	37	6	13977913	13977913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165032	exon4	c.T563G	p.L188W	TGTGGTTGCTAGG	.	86.0	18.0	115.0	0.0	.	.	.	Atlas-SNP
