Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
FOXD2	2306	hgsc.bcm.edu	37	1	47905271	47905272	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1464_1465insA	p.A488fs	.	.	155.0	10.0	98.0	0.0	.	.	.	Atlas-Indel
DOK3	79930	hgsc.bcm.edu	37	5	176936846	176936848	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CGA	CGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_024872	exon1	c.7_9del	p.3_3del	.	.	43.0	11.0	66.0	0.0	.	.	.	Pindel,Atlas-Indel
HIST1H2AD	3013	hgsc.bcm.edu	37	6	26199104	26199105	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_021065	exon1	c.368_369del	p.123_123del	.	.	266.0	51.0	254.0	0.0	.	.	.	Pindel,Atlas-Indel
LONP1	9361	hgsc.bcm.edu	37	19	5696679	5696690	+	In_Frame_Del	DEL	ACCTCGTCGATG	ACCTCGTCGATG	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACCTCGTCGATG	ACCTCGTCGATG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004793	exon11	c.1765_1773del	p.589_591del	.	.	35.0	10.0	60.0	0.0	.	.	.	Pindel,Atlas-Indel
FOXD2	2306	hgsc.bcm.edu	37	1	47905272	47905273	+	In_Frame_Ins	INS	-	-	CAAAGA	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1465_1466insCAAAGA	p.G489delinsAKS	.	.	158.0	10.0	99.0	0.0	.	.	.	Atlas-Indel
AFF4	27125	hgsc.bcm.edu	37	5	132232477	132232479	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014423	exon11	c.1844_1846del	p.615_616del	.	.	107.0	30.0	138.0	0.0	.	.	.	Pindel,Atlas-Indel
FOXD2	2306	hgsc.bcm.edu	37	1	47905268	47905268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1460delT	p.V487fs	.	.	142.0	13.0	89.0	0.0	.	.	.	Atlas-Indel
DCLRE1C	64421	hgsc.bcm.edu	37	10	14976452	14976454	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACA	ACA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001033855	exon8	c.604_606del	p.202_202del	.	.	176.0	29.0	218.0	0.0	.	.	.	Pindel,Atlas-Indel
DENND4C	55667	hgsc.bcm.edu	37	9	19346326	19346326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017925	exon22	c.C3412T	p.L1138F	CAAGAACTCCTTG	.	90.0	28.0	65.0	0.0	.	.	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	37	12	54448769	54448769	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014620	exon4	c.C575A	p.S192X	CCCACTCGCTGTG	.	145.0	38.0	119.0	0.0	.	.	.	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	37	20	45905062	45905062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ZMYND8_ENST00000536340,NS,carcinoma,-2,2	ZMYND8_ENST00000536340	NM_183047	exon11	c.C1476G	p.S492R	ACCTGTGCTCTTA	.	37.0	10.0	28.0	0.0	.	-2	2	Atlas-SNP
CAPN7	23473	hgsc.bcm.edu	37	3	15274030	15274030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014296	exon10	c.T1037C	p.I346T	AGGTGATAATTGA	.	61.0	16.0	90.0	0.0	.	.	.	Atlas-SNP
GDF3	9573	hgsc.bcm.edu	37	12	7848063	7848063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	GDF3,NS,malignant_melanoma,0,1	GDF3	NM_020634	exon1	c.G262T	p.D88Y	CTTGGTCTGGGAG	.	232.0	34.0	67.0	1.0	.	0	1	Atlas-SNP
BCYRN1	618	hgsc.bcm.edu	37	X	70890401	70890401	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GAGAACGGGGAGA	.	55.0	24.0	35.0	0.0	.	.	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	37	5	115837930	115837930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020796	exon3	c.A194T	p.N65I	GTTCCGTTCATGA	.	147.0	22.0	186.0	0.0	.	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	31950249	31950249	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004006	exon46	c.C6710G	p.P2237R	TCAAGTGGGATAC	.	76.0	14.0	68.0	0.0	.	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15284960	15284960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000435	exon25	c.A4655G	p.Q1552R	ATGGCCTGGCCGT	.	25.0	9.0	31.0	0.0	.	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	37	4	48597656	48597656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015030	exon15	c.G1199A	p.R400H	GTGTCACGAGGAA	.	203.0	75.0	253.0	0.0	.	.	.	Atlas-SNP
MIR548F1	100302192	hgsc.bcm.edu	37	1	186134395	186134395	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	CACTAGGTATTTA	.	38.0	13.0	46.0	0.0	.	.	.	Atlas-SNP
KIAA1009	22832	hgsc.bcm.edu	37	6	84862439	84862439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014895	exon23	c.G3454A	p.G1152R	GGGTTCCAGGGAA	.	141.0	8.0	149.0	0.0	.	.	.	Atlas-SNP
ZXDA	7789	hgsc.bcm.edu	37	X	57936054	57936054	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007156	exon1	c.C801T	p.Y267Y	GCACAGGTACAGC	.	68.0	24.0	68.0	0.0	.	.	.	Atlas-SNP
MKS1	54903	hgsc.bcm.edu	37	17	56293605	56293605	+	Splice_Site	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165927	exon5	c.232-1G>C	.	TTCAAACTGAGGT	.	40.0	11.0	35.0	0.0	.	.	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	37	10	112352948	112352948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005445	exon18	c.C1930T	p.R644C	CTGGCCCGTGCTT	.	107.0	46.0	96.0	0.0	.	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	37	17	12921085	12921085	+	Silent	SNP	C	C	T	rs370459638		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165962	exon1	c.G180A	p.L60L	CACCTGCAGGTAC	.	53.0	10.0	46.0	0.0	.	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	37	14	45665475	45665475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020937	exon21	c.A5441T	p.E1814V	CGCAGGAAGGAAA	.	128.0	25.0	131.0	0.0	.	.	.	Atlas-SNP
FAM182A	284800	hgsc.bcm.edu	37	20	26062141	26062141	+	RNA	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GGCGCAGCCCTGG	.	76.0	5.0	85.0	0.0	.	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415680	105415680	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_138420	exon7	c.C6108A	p.L2036L	AATGCTGAGGTCA	.	68.0	36.0	85.0	0.0	.	.	.	Atlas-SNP
ST5	6764	hgsc.bcm.edu	37	11	8734259	8734259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005418	exon12	c.A2011C	p.I671L	ACTGGATGTGGAC	.	34.0	9.0	37.0	0.0	.	.	.	Atlas-SNP
NMT1	4836	hgsc.bcm.edu	37	17	43173564	43173564	+	Silent	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NMT1,NS,carcinoma,0,1	NMT1	NM_021079	exon5	c.A507T	p.L169L	ACAGCTAAAAGAA	.	101.0	16.0	76.0	0.0	.	0	1	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	37	7	149545019	149545019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001099220	exon4	c.A437C	p.Q146P	TTGTGCAGTTTCC	.	109.0	14.0	72.0	0.0	.	.	.	Atlas-SNP
ACOXL	55289	hgsc.bcm.edu	37	2	111556598	111556598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001142807	exon7	c.C468G	p.H156Q	GCCCCACTGTTTC	.	121.0	24.0	94.0	0.0	.	.	.	Atlas-SNP
EID1	23741	hgsc.bcm.edu	37	15	49170473	49170473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014335	exon1	c.G100C	p.G34R	GAGGTAGGCAGCG	.	45.0	11.0	33.0	0.0	.	.	.	Atlas-SNP
B3GNT8	374907	hgsc.bcm.edu	37	19	41932344	41932344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_198540	exon3	c.G340A	p.D114N	GGAGGTCCTTGGG	.	49.0	23.0	54.0	0.0	.	.	.	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	37	7	150912779	150912779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005692	exon13	c.G1441C	p.E481Q	TGTACTCCAAAGG	.	187.0	24.0	115.0	0.0	.	.	.	Atlas-SNP
MED19	219541	hgsc.bcm.edu	37	11	57472453	57472453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_153450	exon2	c.A466C	p.T156P	GGCCAGTGTGGAG	.	34.0	12.0	48.0	0.0	.	.	.	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	37	10	115349537	115349537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001261463	exon41	c.T4976C	p.L1659S	AGGTTCAAGTCTG	.	31.0	12.0	44.0	0.0	.	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	37	5	37044488	37044488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NIPBL_ENST00000448238,neck,malignant_melanoma,-2,2	NIPBL_ENST00000448238	NM_015384	exon35	c.A6148T	p.I2050F	GCAAAAATCCTAG	.	133.0	54.0	159.0	0.0	.	-2	2	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123844801	123844801	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_206862	exon4	c.A2786T	p.E929V	TGACAGAAGAGTC	.	51.0	16.0	62.0	0.0	.	.	.	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	37	1	116940526	116940526	+	Missense_Mutation	SNP	G	G	A	rs200285355		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ATP1A1,NS,carcinoma,-2,1	ATP1A1	NM_000701	exon15	c.G1990A	p.V664I	GCCTGCGTAGTAC	.	51.0	9.0	48.0	0.0	0.001	-2	1	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	37	11	77612564	77612564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_033547	exon18	c.T2131C	p.Y711H	CACTGTACATGAA	.	132.0	43.0	136.0	0.0	.	.	.	Atlas-SNP
HIST1H1B	3009	hgsc.bcm.edu	37	6	27834706	27834706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005322	exon1	c.C602T	p.A201V	GGCTTTGCCGCCT	.	148.0	31.0	113.0	0.0	.	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	37	19	47422321	47422321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004491	exon1	c.A389T	p.K130I	CTGAAAAACTCAT	.	77.0	25.0	91.0	0.0	.	.	.	Atlas-SNP
KCNC3	3748	hgsc.bcm.edu	37	19	50826601	50826601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004977	exon2	c.G1609T	p.V537F	CAATGACGGGCAC	.	41.0	12.0	43.0	0.0	.	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	37	22	22842853	22842853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_080764	exon4	c.G871C	p.G291R	GCTGTCCATAGTA	.	64.0	22.0	80.0	0.0	.	.	.	Atlas-SNP
MELK	9833	hgsc.bcm.edu	37	9	36657333	36657333	+	Silent	SNP	A	A	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	MELK,right_lower_lobe,carcinoma,+2,1	MELK	NM_014791	exon13	c.A1149C	p.T383T	ATCAACAGGTGCT	.	106.0	32.0	71.0	0.0	.	+2	1	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	37	3	52492745	52492745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001276293	exon3	c.G245C	p.R82T	ACTCAAGAAGCTT	.	152.0	37.0	87.0	0.0	.	.	.	Atlas-SNP
CUL4A	8451	hgsc.bcm.edu	37	13	113897455	113897455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001008895	exon11	c.C1209G	p.N403K	ACCCAACAAGCCT	.	64.0	18.0	68.0	0.0	.	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72992565	72992565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006885	exon2	c.C1480G	p.L494V	GAAAGAGTCCTTT	.	79.0	33.0	85.0	0.0	.	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152486121	152486121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001271208	exon68	c.G9763C	p.G3255R	CGTAGCCTTTCTT	.	94.0	19.0	77.0	0.0	.	.	.	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	37	12	123041970	123041970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014708	exon17	c.C1312G	p.L438V	GAGAAACTGGCAT	.	87.0	21.0	76.0	0.0	.	.	.	Atlas-SNP
EEF2K	29904	hgsc.bcm.edu	37	16	22268122	22268122	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_013302	exon7	c.C672T	p.P224P	CAAGCCCCTCTTC	.	57.0	21.0	75.0	0.0	.	.	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	37	8	25344851	25344851	+	Splice_Site	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_152562	exon12	c.1533+1G>A	.	AGAAATGTAAGTG	.	70.0	9.0	78.0	0.0	.	.	.	Atlas-SNP
HNRNPU-AS1	284702	hgsc.bcm.edu	37	1	245009836	245009836	+	RNA	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	AAAAATAGTCCAG	.	104.0	39.0	80.0	0.0	.	.	.	Atlas-SNP
SASH3	54440	hgsc.bcm.edu	37	X	128925040	128925040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_018990	exon4	c.G425A	p.S142N	TGCTCAGCCGCCA	.	233.0	100.0	189.0	0.0	.	.	.	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	37	17	40817522	40817522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016437	exon7	c.G635A	p.R212Q	TGAACCGGATTGC	.	141.0	8.0	100.0	0.0	.	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	37	5	137762705	137762705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016604	exon18	c.C4453T	p.L1485F	CTCAAACTCAAGG	.	61.0	17.0	77.0	0.0	.	.	.	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	37	1	173839876	173839876	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_032522	exon3	c.G513A	p.K171K	CCCAAAGGGAAAC	.	86.0	33.0	95.0	0.0	.	.	.	Atlas-SNP
SP140	11262	hgsc.bcm.edu	37	2	231174675	231174675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007237	exon23	c.G2095T	p.G699X	CGGGACGGAGGGG	.	204.0	50.0	186.0	0.0	.	.	.	Atlas-SNP
SERPINA9	327657	hgsc.bcm.edu	37	14	94933616	94933616	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_175739	exon3	c.G786A	p.E262E	GAACTGCTCTTTC	.	68.0	14.0	73.0	0.0	.	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	37	11	108384984	108384984	+	Nonsense_Mutation	SNP	G	G	T	rs115714924	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015065	exon6	c.C1250A	p.S417X	TGGTACGATTCAT	.	96.0	4.0	97.0	0.0	.	.	.	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	37	15	42446574	42446574	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_213600	exon3	c.C267T	p.C89C	GTCACTGCAGTTG	.	72.0	10.0	51.0	0.0	.	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	37	2	162751205	162751205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001178015	exon11	c.C1211T	p.A404V	ATGTTGCCTATAA	.	105.0	27.0	86.0	0.0	.	.	.	Atlas-SNP
WRNIP1	56897	hgsc.bcm.edu	37	6	2770515	2770515	+	Silent	SNP	G	G	A	rs148604433		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020135	exon3	c.G1176A	p.A392A	GCGAGCGATCAAC	.	100.0	6.0	89.0	0.0	0.000	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	FMNL2,rectum,carcinoma,0,2	FMNL2	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	75.0	25.0	57.0	1.0	.	0	2	Atlas-SNP
