Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
ECT2L	345930	hgsc.bcm.edu	37	6	139175243	139175245	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	ECT2L	NM_001195037	exon9	c.1149_1151del	p.383_384del	.	.	49.0	14.0	88.0	0.0	.	75	.	Pindel,Atlas-Indel
PRPF38B	55119	hgsc.bcm.edu	37	1	109242141	109242142	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PRPF38B,colon,carcinoma,0,1	PRPF38B	NM_018061	exon6	c.1139_1140del	p.380_380del	.	.	82.0	16.0	96.0	0.0	.	55	.	Pindel,Atlas-Indel
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.,2	KRTAP9-1	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	.	.	63.0	11.0	80.0	0.0	.	34	.	Pindel
NRXN2	9379	hgsc.bcm.edu	37	11	64375421	64375421	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015080	exon23	c.G4386A	p.T1462T	GGGCAGCGTGTCT	.	14.0	13.0	8.0	0.0	.	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	37	MT	9607	9607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	ENST00000362079	exon1	c.C401T	p.T134M	TAAACACATCCGT	.	12.0	12.0	13.0	0.0	.	.	.	Atlas-SNP
NEK10	152110	hgsc.bcm.edu	37	3	27326130	27326130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NEK10_ENST00000429845,NS,lymphoid_neoplasm,0,3	NEK10_ENST00000429845	NM_199347	exon23	c.C1977G	p.N659K	AATGTTGTTTGGT	.	111.0	27.0	73.0	0.0	.	0	3	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	37	12	88524340	88524340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_025114	exon8	c.C498G	p.N166K	ACGTTTGTTCTAC	.	65.0	14.0	51.0	0.0	.	.	.	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	37	5	149008389	149008389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001001669	exon12	c.C1678T	p.P560S	TATGTGCCGGCTG	.	67.0	5.0	64.0	0.0	.	.	.	Atlas-SNP
NBPF16	728936	hgsc.bcm.edu	37	1	148579688	148579688	+	Silent	SNP	C	C	G	rs202153254	bycluster	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NBPF15,face,carcinoma,+2,1	NBPF15	NM_001102663	exon3	c.C258G	p.L86L	GCAGCTCAAGCAA	.	32.0	4.0	33.0	0.0	0.001	+2	1	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	37	7	45123210	45123210	+	Missense_Mutation	SNP	G	G	A	rs112661489	bycluster;byfrequency	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NACAD,extremity,malignant_melanoma,0,1	NACAD	NM_001146334	exon2	c.C2569T	p.P857S	GCTTTGGGGCTGA	.	11.0	7.0	13.0	0.0	0.069	0	1	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811099	140811099	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	MAML3_ENST00000509479,caecum,carcinoma,0,12	MAML3_ENST00000509479	NM_018717	exon2	c.G1491A	p.Q497Q	CTGCTGCTGCTGC	.	45.0	5.0	46.0	1.0	.	0	12	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11931	11931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	ENST00000361381	exon1	c.T1172G	p.I391S	CAAATATCACTCT	.	13.0	11.0	14.0	0.0	.	.	.	Atlas-SNP
TREML4	285852	hgsc.bcm.edu	37	6	41196569	41196569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_198153	exon2	c.A181T	p.S61C	TCTCCAAGTCGGT	.	68.0	23.0	66.0	0.0	.	.	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	37	9	16727865	16727865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_017637	exon3	c.C260T	p.T87M	TCAGCCGTAGTCG	.	145.0	10.0	128.0	0.0	.	.	.	Atlas-SNP
ANKRD36	375248	hgsc.bcm.edu	37	2	97853095	97853095	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	ANKRD36_ENST00000420699,NS,carcinoma,0,4	ANKRD36_ENST00000420699	NM_001164315	exon32	c.G2100T	p.S700S	TGTTTCGAATATA	.	74.0	4.0	89.0	0.0	.	0	4	Atlas-SNP
