Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
RNR2	6053	hgsc.bcm.edu	37	MT	2631	2631	+	RNA	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CTGTATGAATGGC	.	22.0	10.0	38.0	0.0	.	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	37	11	130748342	130748342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014758	exon11	c.C2954G	p.S985C	CTCTTAGAGTTGC	.	83.0	19.0	96.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25378561	25378561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	KRAS_ENST00000256078,colon,carcinoma,0,137	KRAS_ENST00000256078	NM_004985	exon4	c.C437T	p.A146V	GTCTTTGCTGATG	.	97.0	18.0	51.0	0.0	.	0	137	Atlas-SNP
CIZ1	25792	hgsc.bcm.edu	37	9	130941502	130941502	+	Silent	SNP	C	C	T	rs145714867	byfrequency	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001257975	exon8	c.G1074A	p.P358P	TATCCGCGGCTGA	.	59.0	7.0	62.0	0.0	0.000	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216150	45216150	+	Silent	SNP	T	T	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1677G	p.S559S	CAGAACTGAAAGA	.	49.0	5.0	61.0	0.0	.	0	2	Atlas-SNP
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG	.	7.0	3.0	11.0	0.0	.	0	1	Atlas-SNP
C1orf68	100129271	hgsc.bcm.edu	37	1	152692487	152692487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001024679	exon1	c.G490T	p.A164S	TGCTCTGCTCCCT	.	176.0	22.0	163.0	0.0	.	.	.	Atlas-SNP
C7orf41	222166	hgsc.bcm.edu	37	7	30185862	30185862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_152793	exon2	c.G232T	p.G78C	TCCTGCGGCAAGA	.	145.0	6.0	107.0	0.0	.	.	.	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	37	3	183013184	183013184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015078	exon13	c.G1579A	p.A527T	TGGCTGCCAGTTT	.	190.0	63.0	181.0	0.0	.	.	.	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	37	16	31088507	31088507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014699	exon2	c.C862T	p.H288Y	CGACTGCATGCCC	.	93.0	17.0	110.0	0.0	.	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	37	4	46053563	46053563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_173536	exon8	c.G1009C	p.V337L	CAGAAACAAAGAG	.	56.0	6.0	66.0	0.0	.	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	37	8	59572148	59572148	+	Missense_Mutation	SNP	G	G	C	rs148456704	bycluster;by1000genomes	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_003580	exon1	c.C43G	p.L15V	AGTAGAGCTGCAG	.	55.0	4.0	56.0	0.0	0.003	.	.	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	37	20	33583281	33583281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_020884	exon28	c.G2969A	p.R990H	GCCGGCGCAAGCT	.	72.0	4.0	83.0	0.0	.	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	37	15	41804958	41804958	+	Silent	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	LTK_ENST00000263800,NS,carcinoma,-1,2	LTK_ENST00000263800	NM_001135685	exon3	c.C306T	p.A102A	CTGCCCGGCGGCC	.	29.0	6.0	45.0	0.0	.	-1	2	Atlas-SNP
ATRIP	84126	hgsc.bcm.edu	37	3	48488478	48488478	+	Missense_Mutation	SNP	G	G	T	rs372906254	alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_130384	exon1	c.G229T	p.A77S	CCGGCCGCGGCTC	.	38.0	5.0	35.0	0.0	.	.	.	Atlas-SNP
GTF2IP1	2970	hgsc.bcm.edu	37	7	72606495	72606495	+	RNA	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	GGCCACCACTGTA	.	193.0	55.0	179.0	0.0	.	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	1068	1068	+	RNA	SNP	A	A	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	GACCCAAACTGGG	.	8.0	4.0	15.0	0.0	.	.	.	Atlas-SNP
