Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
MSH5	4439	hgsc.bcm.edu	37	6	31725947	31725947	+	Silent	SNP	G	G	C	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_025259	exon13	c.G1071C	p.V357V	GACTGTGTACAGT	.	70.0	24.0	74.0	0.0	.	.	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14748512	14748512	+	Missense_Mutation	SNP	G	G	C	rs372583134	alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001145029	exon1	c.G94C	p.G32R	GACTACGGGACCA	.	74.0	16.0	70.0	0.0	.	.	.	Atlas-SNP
TRIM23	373	hgsc.bcm.edu	37	5	64906830	64906830	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	TRIM23,bladder,carcinoma,0,1	TRIM23	NM_033228	exon5	c.C686G	p.S229X	AAAATTGATGCTC	.	73.0	15.0	93.0	0.0	.	0	1	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	37	19	8539106	8539106	+	Silent	SNP	G	G	C	rs375739833	alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	HNRNPM,NS,malignant_melanoma,+2,1	HNRNPM	NM_005968	exon12	c.G1098C	p.G366G	ATCTGGGATGAAC	.	141.0	19.0	132.0	0.0	.	+2	1	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	37	X	147891442	147891442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_002025	exon4	c.C1084T	p.R362W	ATCTTGCGGGTGA	.	139.0	48.0	113.0	0.0	.	.	.	Atlas-SNP
MYPOP	339344	hgsc.bcm.edu	37	19	46394069	46394069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001012643	exon3	c.G1012A	p.V338M	CGGACACGGGCTC	.	30.0	5.0	26.0	0.0	.	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	215847769	215847769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_206933	exon63	c.G13484A	p.R4495H	AAATCACGATAGC	.	112.0	22.0	112.0	0.0	.	.	.	Atlas-SNP
PROX1	5629	hgsc.bcm.edu	37	1	214170542	214170542	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001270616	exon2	c.C664T	p.Q222X	AGTTTCCAGCAGC	.	80.0	6.0	61.0	0.0	.	.	.	Atlas-SNP
STK35	140901	hgsc.bcm.edu	37	20	2083851	2083851	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_080836	exon2	c.G732T	p.A244A	GCTGGCGCTGGCT	.	64.0	5.0	46.0	0.0	.	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725116	30725116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_032457	exon1	c.C2072T	p.T691M	ATGACACGGGGAC	.	57.0	15.0	80.0	0.0	.	.	.	Atlas-SNP
MRPL45P2	653479	hgsc.bcm.edu	37	17	45560578	45560578	+	RNA	SNP	T	T	C	rs199837409	bycluster	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	.	.	.	.	TTTTTTTCTTTTT	.	140.0	6.0	131.0	0.0	.	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC	.	65.0	4.0	50.0	2.0	.	0	2	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	49.0	7.0	74.0	0.0	.	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	37	2	108496563	108496563	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_182588	exon21	c.G5064C	p.K1688N	AATTAAGGTGAGA	.	795.0	36.0	751.0	0.0	.	.	.	Atlas-SNP
FUK	197258	hgsc.bcm.edu	37	16	70502854	70502854	+	Missense_Mutation	SNP	G	G	A	rs200140905		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_145059	exon9	c.G766A	p.G256R	GACTCCGGAGCCC	.	77.0	18.0	67.0	0.0	0.001	.	.	Atlas-SNP
RBP1	5947	hgsc.bcm.edu	37	3	139257745	139257745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_002899	exon2	c.G316C	p.V106L	CCTGCACGATCTC	.	120.0	8.0	134.0	0.0	.	.	.	Atlas-SNP
PDZD8	118987	hgsc.bcm.edu	37	10	119044191	119044191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_173791	exon5	c.C2053A	p.L685I	GATAAAGAATTTC	.	111.0	5.0	125.0	0.0	.	.	.	Atlas-SNP
