Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SMARCD1	6602	hgsc.bcm.edu	37	12	50492743	50492743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003076	exon13	c.G1508T	p.R503L	AGAGACGACAAGA	.	96.0	4.0	83.0	0.0	.	.	.	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	37	4	77290777	77290777	+	Splice_Site	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	CCDC158,NS,carcinoma,0,1	CCDC158	NM_001042784	exon11	c.1150-1G>A	.	ATCAGCCTAAAAA	.	79.0	18.0	82.0	0.0	.	0	1	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382500	24382500	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001136234	exon1	c.T1623C	p.A541A	TGCTGCTGCTGCT	.	85.0	10.0	66.0	0.0	.	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34923420	34923420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_032195	exon3	c.G1883T	p.G628V	CAACAGGGGTGCT	.	105.0	7.0	65.0	0.0	.	.	.	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	37	17	40653235	40653235	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001130020	exon17	c.G1938T	p.L646L	TTTCCTGGTAGTG	.	95.0	5.0	101.0	0.0	.	.	.	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	37	7	56087423	56087423	+	Missense_Mutation	SNP	G	G	A	rs79451216	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	PSPH,NS,lymphoid_neoplasm,0,1	PSPH	NM_004577	exon5	c.C145T	p.R49W	CTCGCCGTGTCCT	.	49.0	8.0	16.0	1.0	0.086	0	1	Atlas-SNP
CBS	875	hgsc.bcm.edu	37	21	44485607	44485607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_000071	exon7	c.G556A	p.A186T	TCTCAGCCCCCAG	.	103.0	24.0	76.0	0.0	.	.	.	Atlas-SNP
CHFR	55743	hgsc.bcm.edu	37	12	133424713	133424713	+	Silent	SNP	G	G	A	rs372404283		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001161344	exon14	c.C1641T	p.D547D	CACGCCGTCCAGA	.	135.0	6.0	109.0	0.0	.	.	.	Atlas-SNP
WIPF3	644150	hgsc.bcm.edu	37	7	29923647	29923647	+	Silent	SNP	A	A	G	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001080529	exon5	c.A537G	p.P179P	CACCCCACCCCCT	.	73.0	15.0	43.0	0.0	.	.	.	Atlas-SNP
KRTAP10-10	353333	hgsc.bcm.edu	37	21	46057832	46057832	+	Silent	SNP	T	T	A	rs149762795	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KRTAP10-10,NS,carcinoma,0,1	KRTAP10-10	NM_181688	exon1	c.T498A	p.T166T	TTCCACTTCATGC	.	70.0	5.0	41.0	0.0	0.007	0	1	Atlas-SNP
MIR548O2	100616190	hgsc.bcm.edu	37	8	30096369	30096369	+	RNA	SNP	C	C	T	rs113992738	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	CGGTATCGAGATT	.	11.0	9.0	6.0	0.0	0.016	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228456342	228456342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	OBSCN_ENST00000570156,NS,carcinoma,-1,8	OBSCN_ENST00000570156	NM_001271223	exon19	c.C5525T	p.T1842M	AGGTGACGTGGTA	.	98.0	4.0	102.0	0.0	.	-1	8	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045894	7045894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	ATN1,caecum,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1464C	p.Q488H	GCAACAGCAGCAG	.	83.0	4.0	69.0	2.0	.	0	1	Atlas-SNP
SDHB	6390	hgsc.bcm.edu	37	1	17371263	17371263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003000	exon2	c.C193A	p.L65I	TATTAAGGTCAAC	.	92.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
NRAS	4893	hgsc.bcm.edu	37	1	115258748	115258748	+	Missense_Mutation	SNP	C	C	T	rs121913250	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	NRAS,NS,haematopoietic_neoplasm,+1,861	NRAS	NM_002524	exon2	c.G34A	p.G12S	CACCACCTGCTCC	.	196.0	30.0	208.0	0.0	.	+1	861	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA	.	80.0	28.0	63.0	0.0	.	0	932	Atlas-SNP
