Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
PSIP1	11168	hgsc.bcm.edu	37	9	15472670	15472672	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	PSIP1	NM_001128217	exon10	c.936_938del	p.312_313del	.	.	199.0	34.0	174.0	0.0	.	93	.	Pindel,Atlas-Indel
GRB10	2887	hgsc.bcm.edu	37	7	50671755	50671755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005311	exon14	c.A1484T	p.H495L	CTCCCGTGAAACC	.	77.0	8.0	85.0	0.0	.	.	.	Atlas-SNP
CCDC43	124808	hgsc.bcm.edu	37	17	42759494	42759494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001099225	exon3	c.C305G	p.A102G	GCAATGGCCTGTA	.	172.0	8.0	157.0	0.0	.	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558391	11558391	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	PRKCSH,NS,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G987A	p.E329E	AGAAGAGGAGGAG	.	77.0	5.0	67.0	0.0	.	0	1	Atlas-SNP
EVA1A	84141	hgsc.bcm.edu	37	2	75720472	75720472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_032181	exon4	c.G349T	p.E117X	CCAGCTCCTCCGC	.	154.0	34.0	170.0	0.0	.	.	.	Atlas-SNP
MMP11	4320	hgsc.bcm.edu	37	22	24124604	24124604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005940	exon7	c.C1267A	p.P423T	CCCGTGCCCCGCA	.	81.0	14.0	86.0	0.0	.	.	.	Atlas-SNP
CCNT2	905	hgsc.bcm.edu	37	2	135694499	135694499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_058241	exon3	c.G329C	p.C110S	ATGCTTGTCTTCA	.	112.0	10.0	90.0	0.0	.	.	.	Atlas-SNP
CPN2	1370	hgsc.bcm.edu	37	3	194062671	194062671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	CPN2,NS,carcinoma,0,1	CPN2	NM_001080513	exon2	c.C761A	p.T254K	AGGTGCGTGATGG	.	158.0	18.0	126.0	0.0	.	0	1	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	37	19	51128793	51128793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_032298	exon6	c.C1431A	p.S477R	CCCCTCGCTGATC	.	97.0	4.0	81.0	0.0	.	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	37	6	111714087	111714087	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_002912	exon5	c.A654G	p.E218E	TGGTATTTCATCT	.	140.0	38.0	174.0	0.0	.	.	.	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	37	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	KRT3,rectum,carcinoma,0,1	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	25.0	6.0	20.0	0.0	.	0	1	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	1024	1024	+	RNA	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	.	.	.	.	GACTACGAAAGTG	.	33.0	27.0	126.0	0.0	.	.	.	Atlas-SNP
NUDT17	200035	hgsc.bcm.edu	37	1	145589328	145589328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	NUDT17,NS,carcinoma,+2,1	NUDT17	NM_001012758	exon1	c.G100A	p.G34R	ACGTCCCGAGCCC	.	73.0	4.0	80.0	0.0	.	+2	1	Atlas-SNP
ZNF573	126231	hgsc.bcm.edu	37	19	38260728	38260728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001172690	exon4	c.C212A	p.S71Y	GAAATGGAATGTC	.	98.0	4.0	111.0	0.0	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536475	88536475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_014208	exon5	c.A2661C	p.E887D	CAACGAAAGCAGC	.	89.0	6.0	98.0	0.0	.	.	.	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	37	12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	rs150832622	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC	.	95.0	4.0	33.0	0.0	0.002	.	.	Atlas-SNP
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568544	103568544	+	Nonsense_Mutation	SNP	G	G	T	rs373034943	alternate_allele	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001077594	exon2	c.G484T	p.E162X	GTGGCCGAGAAGG	.	70.0	24.0	62.0	0.0	.	.	.	Atlas-SNP
RNPC3	55599	hgsc.bcm.edu	37	1	104068861	104068861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_017619	exon1	c.G169A	p.V57I	GTGCGGGTCCTGT	.	117.0	17.0	162.0	0.0	.	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32024600	32024600	+	Missense_Mutation	SNP	T	T	C	rs369180703		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	TNXB_ENST00000375247,NS,carcinoma,0,2	TNXB_ENST00000375247	NM_019105	exon23	c.A7906G	p.M2636V	CTGTCATGGTCAG	.	120.0	5.0	133.0	2.0	.	0	2	Atlas-SNP
TXLNB	167838	hgsc.bcm.edu	37	6	139569008	139569008	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_153235	exon8	c.C1116T	p.S372S	TAGTGTGCTCTGG	.	143.0	31.0	197.0	0.0	.	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108139142	108139142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_000051	exon18	c.A2644G	p.I882V	GGTGCCATTAATC	.	87.0	26.0	72.0	0.0	.	.	.	Atlas-SNP
