Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
CREBBP	1387	hgsc.bcm.edu	37	16	3900553	3900554	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	CREBBP	NM_001079846	exon2	c.543_544del	p.181_182del	.	.	63.0	14.0	83.0	0.0	.	546	.	Pindel,Atlas-Indel
HECTD1	25831	hgsc.bcm.edu	37	14	31576895	31576897	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	HECTD1	NM_015382	exon37	c.6495_6497del	p.2165_2166del	.	.	75.0	16.0	118.0	0.0	.	159	.	Pindel,Atlas-Indel
ZFHX4	79776	hgsc.bcm.edu	37	8	77767796	77767797	+	In_Frame_Ins	INS	-	-	CGACCA	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	ZFHX4	NM_024721	exon10	c.8639_8640insCGACCA	p.G2880delinsGDH	.	.	69.0	13.0	95.0	0.0	.	878	.	Pindel,Atlas-Indel
FTSJ3	117246	hgsc.bcm.edu	37	17	61898885	61898886	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	FTSJ3	NM_017647	exon16	c.1715_1716del	p.572_572del	.	.	65.0	12.0	74.0	0.0	.	63	.	Pindel,Atlas-Indel
QRICH2	84074	hgsc.bcm.edu	37	17	74288014	74288014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032134	exon4	c.G2296A	p.V766I	GTTGTACCAGGCC	.	117.0	13.0	102.0	0.0	.	.	.	Atlas-SNP
PRSS57	400668	hgsc.bcm.edu	37	19	686926	686926	+	Missense_Mutation	SNP	G	G	A	rs372538839		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_214710	exon4	c.C644T	p.S215L	CTTACCGAGCAGA	.	72.0	26.0	130.0	0.0	.	.	.	Atlas-SNP
PA2G4	5036	hgsc.bcm.edu	37	12	56505268	56505268	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006191	exon12	c.C1074T	p.L358L	CCTCCTCCAGAGT	.	214.0	64.0	226.0	0.0	.	.	.	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	37	3	180320071	180320071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001042601	exon1	c.C22G	p.Q8E	TTGCGGCAGTCGC	.	56.0	16.0	45.0	0.0	.	.	.	Atlas-SNP
CDR2	1039	hgsc.bcm.edu	37	16	22376333	22376333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001802	exon2	c.C82T	p.L28F	GTTGAAGATCTAG	.	83.0	36.0	84.0	0.0	.	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113308062	113308062	+	Missense_Mutation	SNP	G	G	T	rs199825870	by1000genomes;alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_198123	exon54	c.C8614A	p.P2872T	ACTTACGCACACA	.	82.0	29.0	146.0	0.0	.	.	.	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	37	14	91642295	91642295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001102368	exon7	c.G625A	p.E209K	ATCAAAGAGCTTT	.	96.0	13.0	119.0	0.0	.	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	37	1	27057901	27057901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006015	exon3	c.C1609T	p.Q537X	CCCTCCCAGCAGT	.	106.0	55.0	133.0	0.0	.	.	.	Atlas-SNP
PARP15	165631	hgsc.bcm.edu	37	3	122296590	122296590	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001113523	exon1	c.G76C	p.V26L	CACGGAGTTGCAG	.	124.0	81.0	113.0	0.0	.	.	.	Atlas-SNP
TPH1	7166	hgsc.bcm.edu	37	11	18057536	18057536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TPH1,NS,carcinoma,+2,1	TPH1	NM_004179	exon2	c.C271A	p.L91I	CTGGTAGATTCAC	.	94.0	28.0	115.0	0.0	.	+2	1	Atlas-SNP
STRIP1	85369	hgsc.bcm.edu	37	1	110584439	110584439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_033088	exon8	c.T841C	p.F281L	CCTCACTTTCCCA	.	96.0	4.0	156.0	0.0	.	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	37	X	24751914	24751914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016937	exon17	c.A1796G	p.K599R	CTTTCAAAGAAGT	.	527.0	242.0	475.0	1.0	.	.	.	Atlas-SNP
TRIM16	10626	hgsc.bcm.edu	37	17	15532122	15532122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006470	exon9	c.T1502A	p.F501Y	CCCGGGAAGTCGA	.	166.0	49.0	169.0	0.0	.	.	.	Atlas-SNP
TP63	8626	hgsc.bcm.edu	37	3	189586470	189586470	+	Nonsense_Mutation	SNP	C	C	A	rs147148566	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TP63_ENST00000418709,mucosal,malignant_melanoma,0,6	TP63_ENST00000418709	NM_001114979	exon8	c.C1094A	p.S365X	AAGTTTCGGACAG	.	131.0	48.0	112.0	0.0	.	0	6	Atlas-SNP
HTR1D	3352	hgsc.bcm.edu	37	1	23520342	23520342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_000864	exon1	c.C371T	p.A124V	ATGGAGGCTGTGC	.	84.0	38.0	117.0	0.0	.	.	.	Atlas-SNP
FOXQ1	94234	hgsc.bcm.edu	37	6	1313345	1313345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_033260	exon1	c.G406A	p.A136T	GACTCGGCGGGCG	.	49.0	18.0	55.0	0.0	.	.	.	Atlas-SNP
PRSS3P2	154754	hgsc.bcm.edu	37	7	142479004	142479004	+	RNA	SNP	A	A	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	TGGCATATCTCCT	.	23.0	6.0	20.0	0.0	.	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	37	3	10132048	10132048	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001018115	exon37	c.C3756T	p.G1252G	GCCTGGCACAGCA	.	52.0	27.0	56.0	0.0	.	.	.	Atlas-SNP
CRNKL1	51340	hgsc.bcm.edu	37	20	20033204	20033204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016652	exon2	c.C266T	p.T89M	CAGCGCGTGGAGT	.	56.0	20.0	63.0	0.0	.	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	37	2	148657362	148657362	+	Silent	SNP	C	C	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001616	exon4	c.C423G	p.L141L	CCTGCTCTATTCC	.	230.0	68.0	251.0	0.0	.	.	.	Atlas-SNP
TAF9B	51616	hgsc.bcm.edu	37	X	77393365	77393365	+	Missense_Mutation	SNP	C	C	T	rs372088655		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015975	exon4	c.G286A	p.A96T	GCCTTGCGATATC	.	314.0	138.0	295.0	0.0	.	.	.	Atlas-SNP
ZFP64	55734	hgsc.bcm.edu	37	20	50769116	50769116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_018197	exon6	c.C1615T	p.R539W	GCAGCCGGCTGTT	.	21.0	7.0	14.0	0.0	.	.	.	Atlas-SNP
UBXN4	23190	hgsc.bcm.edu	37	2	136528187	136528187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_014607	exon8	c.T704A	p.M235K	AAGAAATGTTGGA	.	361.0	91.0	349.0	0.0	.	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	45.0	4.0	52.0	0.0	.	0	1	Atlas-SNP
KCTD15	79047	hgsc.bcm.edu	37	19	34292141	34292141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001129995	exon4	c.C136A	p.P46T	GGCATCCCCCTGC	.	46.0	13.0	65.0	0.0	.	.	.	Atlas-SNP
PRSS3P2	154754	hgsc.bcm.edu	37	7	142479029	142479029	+	RNA	SNP	C	C	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	TGGGCTCTCTTTA	.	18.0	5.0	12.0	0.0	.	.	.	Atlas-SNP
MEI1	150365	hgsc.bcm.edu	37	22	42126573	42126573	+	Missense_Mutation	SNP	C	C	T	rs374534859		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_152513	exon9	c.C1028T	p.S343F	TCTGGTCCAGCTG	.	95.0	87.0	129.0	1.0	.	.	.	Atlas-SNP
GPM6A	2823	hgsc.bcm.edu	37	4	176923708	176923708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001261447	exon1	c.G34A	p.G12R	CCTCCCCAGAGGC	.	19.0	10.0	16.0	0.0	.	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	37	2	27800712	27800712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	C2orf16_ENST00000408964,colon,carcinoma,0,2	C2orf16_ENST00000408964	NM_032266	exon1	c.A1273T	p.S425C	CAAACAAGTCAAG	.	107.0	30.0	100.0	0.0	.	0	2	Atlas-SNP
GATAD2B	57459	hgsc.bcm.edu	37	1	153784507	153784507	+	Silent	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	GATAD2B,colon,carcinoma,0,1	GATAD2B	NM_020699	exon9	c.G1521A	p.T507T	CCGAAGCGTATGA	.	70.0	6.0	65.0	0.0	.	0	1	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	37	21	34050984	34050984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	SYNJ1,rectum,carcinoma,-1,1	SYNJ1	NM_203446	exon12	c.G1598A	p.R533Q	AGTGCTCGAGCTT	.	171.0	34.0	184.0	0.0	.	-1	1	Atlas-SNP
TPH1	7166	hgsc.bcm.edu	37	11	18057614	18057614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_004179	exon2	c.G193C	p.D65H	CACAGTCAACAAA	.	123.0	32.0	134.0	0.0	.	.	.	Atlas-SNP
CNGA1	1259	hgsc.bcm.edu	37	4	47939764	47939764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001142564	exon10	c.T954G	p.D318E	CAGAACATCAAGT	.	109.0	42.0	184.0	0.0	.	.	.	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	37	2	74642265	74642265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	C2orf81,colon,carcinoma,0,1	C2orf81	NM_001145054	exon4	c.T958G	p.S320A	GGCAGGACGCGGA	.	69.0	4.0	79.0	1.0	.	0	1	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	37	8	146156383	146156383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006958	exon3	c.G1790A	p.G597E	TTTTCCCCAGTAT	.	60.0	29.0	90.0	0.0	.	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42156128	42156128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016642	exon40	c.G6908A	p.R2303Q	CTTCGCCGCTGGC	.	39.0	6.0	54.0	0.0	.	.	.	Atlas-SNP
SLC43A1	8501	hgsc.bcm.edu	37	11	57281542	57281542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001198810	exon2	c.A43T	p.M15L	AGGCCATCCACCA	.	33.0	13.0	45.0	0.0	.	.	.	Atlas-SNP
C9orf173	441476	hgsc.bcm.edu	37	9	140145760	140145760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001256701	exon1	c.G22T	p.A8S	CAGAAGGCAGTGA	.	98.0	4.0	128.0	0.0	.	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1254228	1254228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_021098	exon10	c.G2221A	p.D741N	CGCTGGGACCCCA	.	80.0	24.0	100.0	0.0	.	.	.	Atlas-SNP
PRSS3P2	154754	hgsc.bcm.edu	37	7	142479016	142479016	+	RNA	SNP	T	T	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	TTCCCATCCTCCT	.	18.0	6.0	17.0	0.0	.	.	.	Atlas-SNP
PPM1D	8493	hgsc.bcm.edu	37	17	58740737	58740737	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_003620	exon6	c.A1642T	p.K548X	CTGATGAAGAAGC	.	84.0	26.0	109.0	0.0	.	.	.	Atlas-SNP
TAB2	23118	hgsc.bcm.edu	37	6	149699839	149699839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015093	exon5	c.A788G	p.N263S	CATCTAATCCTCT	.	84.0	15.0	127.0	0.0	.	.	.	Atlas-SNP
MIR340	442908	hgsc.bcm.edu	37	5	179442323	179442323	+	RNA	SNP	T	T	C	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	TGGCTATAAAGTA	.	142.0	61.0	289.0	0.0	.	.	.	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	37	12	102125386	102125386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001177949	exon7	c.G512A	p.R171K	TTCAATCTCTGGC	.	55.0	16.0	74.0	0.0	.	.	.	Atlas-SNP
FUZ	80199	hgsc.bcm.edu	37	19	50312451	50312451	+	Missense_Mutation	SNP	G	G	T	rs376948728	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_025129	exon7	c.C755A	p.P252Q	GGGCTCGGCCCGC	.	67.0	18.0	115.0	0.0	.	.	.	Atlas-SNP
LARP4B	23185	hgsc.bcm.edu	37	10	859126	859126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015155	exon18	c.A1957T	p.I653F	GACAAATCTCTGC	.	145.0	64.0	140.0	0.0	.	.	.	Atlas-SNP
EIF4B	1975	hgsc.bcm.edu	37	12	53410339	53410339	+	Silent	SNP	C	C	G	rs373400973		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001417	exon2	c.C96G	p.T32T	AAGCACCTATGTT	.	75.0	17.0	60.0	0.0	.	.	.	Atlas-SNP
RAET1K	646024	hgsc.bcm.edu	37	6	150322744	150322744	+	RNA	SNP	C	C	T	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	TCACACCATCGTG	.	109.0	28.0	231.0	0.0	.	.	.	Atlas-SNP
