Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
UACA	55075	hgsc.bcm.edu	37	15	70960705	70960706	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	UACA	NM_018003	exon16	c.2318_2319del	p.773_773del	.	.	68.0	22.0	46.0	0.0	.	235	.	Pindel,Atlas-Indel
HRH3	11255	hgsc.bcm.edu	37	20	60791521	60791522	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	HRH3	NM_007232	exon3	c.879_880insG	p.G293fs	.	.	40.0	17.0	26.0	0.0	.	25	.	Atlas-Indel
HMG20B	10362	hgsc.bcm.edu	37	19	3575627	3575638	+	In_Frame_Del	DEL	GGAGAAGATCCA	GGAGAAGATCCA	-	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	GGAGAAGATCCA	GGAGAAGATCCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	HMG20B	NM_006339	exon5	c.440_451del	p.147_151del	.	.	32.0	11.0	26.0	0.0	.	12	.	Atlas-Indel
PSMB5	5693	hgsc.bcm.edu	37	14	23504076	23504076	+	Silent	SNP	G	G	A	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	PSMB5_ENST00000493471,NS,carcinoma,0,2	PSMB5_ENST00000493471	NM_001144932	exon1	c.C15T	p.S5S	CAACACGCTGGCA	.	67.0	6.0	70.0	0.0	.	0	2	Atlas-SNP
GBP3	2635	hgsc.bcm.edu	37	1	89477486	89477486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_018284	exon7	c.G1093A	p.V365I	TATAGACTTCAGT	.	280.0	79.0	218.0	0.0	.	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152283719	152283719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	FLG,NS,carcinoma,0,2	FLG	NM_002016	exon3	c.A3643C	p.S1215R	TTGCACTTCTGGA	.	94.0	7.0	83.0	0.0	.	0	2	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52198198	52198198	+	Silent	SNP	G	G	A	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_006526	exon1	c.C1168T	p.L390L	AGACCAGCTGGTG	.	89.0	25.0	76.0	0.0	.	.	.	Atlas-SNP
MAGEA12	4111	hgsc.bcm.edu	37	X	151899528	151899528	+	RNA	SNP	C	C	T	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	.	.	.	.	GATTTCCCAATCT	.	77.0	33.0	61.0	0.0	.	.	.	Atlas-SNP
TAS1R3	83756	hgsc.bcm.edu	37	1	1269674	1269674	+	Missense_Mutation	SNP	G	G	T	rs147583678		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_152228	exon6	c.G2389T	p.A797S	ATGGGCGCCCTCC	.	69.0	4.0	91.0	0.0	.	.	.	Atlas-SNP
RNR1	6052	hgsc.bcm.edu	37	MT	1586	1586	+	RNA	SNP	G	G	A	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	.	.	.	.	TGGAAAGTGCACT	.	15.0	13.0	26.0	0.0	.	.	.	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	37	10	45486407	45486407	+	Silent	SNP	T	T	C	rs142266476		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	RASSF4,NS,carcinoma,-2,1	RASSF4	NM_032023	exon9	c.T697C	p.L233L	ACAAAATTAAAAG	.	34.0	2.0	50.0	0.0	0.000	-2	1	Atlas-SNP
GPCPD1	56261	hgsc.bcm.edu	37	20	5528338	5528338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_019593	exon20	c.C1988A	p.A663D	CCGTTGGCATCCA	.	110.0	5.0	61.0	0.0	.	.	.	Atlas-SNP
RASA4CP	401331	hgsc.bcm.edu	37	7	44069004	44069004	+	RNA	SNP	C	C	T	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	.	.	.	.	GGGCCTCGCGGAG	.	17.0	9.0	8.0	0.0	.	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17039937	17039937	+	Silent	SNP	A	A	G	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_015692	exon24	c.T3100C	p.L1034L	AAGACAAGGCCAC	.	23.0	10.0	30.0	0.0	.	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126372841	126372841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_024582	exon9	c.A10670G	p.Y3557C	CCAGTTATTTCAG	.	95.0	31.0	102.0	0.0	.	.	.	Atlas-SNP
SART1	9092	hgsc.bcm.edu	37	11	65744158	65744158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_005146	exon14	c.A1778C	p.N593T	CAGCCAACGGTGG	.	82.0	51.0	48.0	0.0	.	.	.	Atlas-SNP
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	.	.	.	.	TTTTCTCCTCCCG	.	60.0	18.0	57.0	0.0	.	.	.	Atlas-SNP
SIL1	64374	hgsc.bcm.edu	37	5	138283066	138283066	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001037633	exon11	c.C1126T	p.Q376X	AGCCCTGTTCCCA	.	91.0	9.0	149.0	0.0	.	.	.	Atlas-SNP
