Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
BEND4	389206	hgsc.bcm.edu	37	4	42145741	42145742	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	BEND4	NM_001159547	exon3	c.758_759del	p.253_253del	.	.	148.0	12.0	111.0	0.0	.	67	.	Atlas-Indel
RACGAP1	29127	hgsc.bcm.edu	37	12	50393482	50393482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_013277	exon10	c.C665G	p.T222S	GGAACAGTCACTG	.	101.0	10.0	94.0	0.0	.	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC	.	302.0	20.0	181.0	0.0	.	0	25136	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28501285	28501285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145418	exon8	c.G3289C	p.V1097L	ACATGACTGCTTG	.	382.0	37.0	241.0	0.0	.	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	37	13	20610939	20610939	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001190964	exon13	c.A2182T	p.N728Y	ACTTGCAACTATT	.	136.0	12.0	126.0	0.0	.	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MED16,colon,carcinoma,0,1	MED16	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	130.0	6.0	111.0	2.0	.	0	1	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982009	240982009	+	Missense_Mutation	SNP	G	G	A	rs202192655		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	PRR21,NS,malignant_melanoma,0,2	PRR21	NM_001080835	exon1	c.C391T	p.P131S	CCGTGGGTGAAGA	.	20.0	5.0	8.0	1.0	.	0	2	Atlas-SNP
OLFML3	56944	hgsc.bcm.edu	37	1	114523051	114523051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_020190	exon2	c.A212T	p.K71M	CAGAGAAGGAGCG	.	159.0	30.0	130.0	0.0	.	.	.	Atlas-SNP
SLC26A8	116369	hgsc.bcm.edu	37	6	35960389	35960389	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_052961	exon6	c.T690C	p.S230S	GTAAGCACTCATT	.	57.0	9.0	60.0	0.0	.	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	37	16	3830851	3830851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_004380	exon8	c.G1705A	p.G569S	TGTTACCAGAGTT	.	127.0	15.0	89.0	0.0	.	.	.	Atlas-SNP
ZC3H11A	9877	hgsc.bcm.edu	37	1	203819655	203819655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014827	exon18	c.T1952C	p.V651A	CCAAAGTGAACGT	.	192.0	32.0	142.0	0.0	.	.	.	Atlas-SNP
GNG12-AS1	100289178	hgsc.bcm.edu	37	1	68564463	68564463	+	RNA	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TAAAACCATGCAA	.	181.0	23.0	101.0	0.0	.	.	.	Atlas-SNP
tRNA-Cys	0	hgsc.bcm.edu	37	MT	5824	5824	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	CTCGGAGCTGGTA	.	234.0	60.0	94.0	0.0	.	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114271404	114271404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001148	exon37	c.A4425C	p.K1475N	AGAAAAAAGTAAG	.	55.0	5.0	34.0	0.0	.	.	.	Atlas-SNP
HNRNPA1P10	664709	hgsc.bcm.edu	37	12	54677045	54677045	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	GTACTTGGTGTGA	.	125.0	14.0	84.0	0.0	.	.	.	Atlas-SNP
SH2B1	25970	hgsc.bcm.edu	37	16	28883695	28883695	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145796	exon7	c.C1698T	p.L566L	CGTCCTCACCTTC	.	83.0	13.0	74.0	0.0	.	.	.	Atlas-SNP
TECR	9524	hgsc.bcm.edu	37	19	14675087	14675087	+	Silent	SNP	C	C	A	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	TECR,NS,carcinoma,+1,1	TECR	NM_138501	exon7	c.C477A	p.R159R	TTTGCGCAACATC	.	50.0	6.0	36.0	0.0	.	+1	1	Atlas-SNP
CXXC1	30827	hgsc.bcm.edu	37	18	47812290	47812290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	CXXC1,NS,carcinoma,0,1	CXXC1	NM_001101654	exon5	c.G468C	p.Q156H	CTGCTGCTGGTGA	.	85.0	4.0	63.0	1.0	.	0	1	Atlas-SNP
KIT	3815	hgsc.bcm.edu	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	rs121913506	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA	.	116.0	11.0	62.0	1.0	.	0	932	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	37	4	169146761	169146761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017631	exon34	c.G4600A	p.E1534K	AGTCCTCCATAAT	.	132.0	16.0	116.0	0.0	.	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	37	18	44560885	44560885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_016427	exon1	c.G751A	p.E251K	ATTTCTCCCTGAT	.	150.0	16.0	94.0	0.0	.	.	.	Atlas-SNP
SPRED3	399473	hgsc.bcm.edu	37	19	38882866	38882866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	SPRED3_ENST00000396877,bladder,carcinoma,-1,2	SPRED3_ENST00000396877	NM_001042522	exon3	c.T361C	p.S121P	ACCCCCTCCTCCT	.	63.0	4.0	45.0	1.0	.	-1	2	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	37	6	157100005	157100005	+	Silent	SNP	C	C	A	rs184815562	bycluster;by1000genomes	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA	.	56.0	4.0	27.0	0.0	0.055	.	.	Atlas-SNP
HOXD9	3235	hgsc.bcm.edu	37	2	176988212	176988212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014213	exon1	c.C716T	p.S239L	GCGGCTCGTCGGA	.	185.0	21.0	114.0	0.0	.	.	.	Atlas-SNP
IL36A	27179	hgsc.bcm.edu	37	2	113763655	113763655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014440	exon2	c.A115G	p.M39V	GACCGTATGTCTC	.	107.0	5.0	66.0	0.0	.	.	.	Atlas-SNP
DUSP26	78986	hgsc.bcm.edu	37	8	33449560	33449560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_024025	exon4	c.C607A	p.R203S	GCCTGCGGTCCAG	.	83.0	11.0	71.0	0.0	.	.	.	Atlas-SNP
ATAD3C	219293	hgsc.bcm.edu	37	1	1396296	1396296	+	Missense_Mutation	SNP	C	C	T	rs202189170	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001039211	exon10	c.C979T	p.R327W	GGAAAGCGGTAAG	.	72.0	11.0	87.0	0.0	.	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	45.0	8.0	23.0	0.0	.	.	.	Atlas-SNP
FRG1B	284802	hgsc.bcm.edu	37	20	29628455	29628455	+	RNA	SNP	G	G	A	rs79885463		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	AATGTGGTGTTTC	.	137.0	8.0	77.0	0.0	0.500	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85972858	85972858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001171971	exon16	c.G1794C	p.E598D	AGACGAGGATGCA	.	148.0	16.0	93.0	0.0	.	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G	rs202139830		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001142864	exon17	c.G2248C	p.E750Q	CCTCCTCCTGCTG	.	76.0	4.0	73.0	0.0	.	.	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	37	17	51901904	51901904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIF2B,NS,carcinoma,0,2	KIF2B	NM_032559	exon1	c.C1510T	p.R504W	GTGCTCCGGGACT	.	95.0	4.0	58.0	0.0	.	0	2	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	37	19	1487795	1487795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017573	exon5	c.C582G	p.S194R	CTCTTTGCTGGGG	.	42.0	4.0	27.0	0.0	.	.	.	Atlas-SNP
