Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
UBQLN1	29979	hgsc.bcm.edu	37	9	86294939	86294939	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.463delC	p.L155fs	.	.	83.0	19.0	86.0	0.0	.	49	.	Atlas-Indel
NGFR	4804	hgsc.bcm.edu	37	17	47587939	47587947	+	In_Frame_Del	DEL	GAGGCACCA	GAGGCACCA	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	GAGGCACCA	GAGGCACCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NGFR	NM_002507	exon4	c.733_741del	p.245_247del	.	.	87.0	13.0	55.0	0.0	.	46	.	Atlas-Indel
NDST1	3340	hgsc.bcm.edu	37	5	149915275	149915277	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NDST1	NM_001543	exon6	c.1264_1266del	p.422_422del	.	.	98.0	18.0	107.0	0.0	.	79	.	Pindel,Atlas-Indel
UBQLN1	29979	hgsc.bcm.edu	37	9	86294943	86294943	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.459delG	p.G153fs	.	.	84.0	13.0	84.0	0.0	.	49	.	Pindel
MUC17	140453	hgsc.bcm.edu	37	7	100679221	100679221	+	Silent	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001040105	exon3	c.G4524T	p.T1508T	CTCAACGCCTAGT	.	73.0	6.0	90.0	0.0	.	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC	.	31.0	4.0	21.0	0.0	.	0	1	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	37	12	56995804	56995804	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013449	exon20	c.A3603G	p.Q1201Q	CCTAGGTTGCATA	.	109.0	17.0	100.0	0.0	.	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746615	50746615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001145475	exon4	c.A4000G	p.T1334A	CCTGAGTCTGCGC	.	122.0	5.0	93.0	0.0	.	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	37	3	142186852	142186852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001184	exon39	c.T6611C	p.M2204T	TTTTTCATATGAA	.	48.0	21.0	45.0	0.0	.	.	.	Atlas-SNP
FGD1	2245	hgsc.bcm.edu	37	X	54476099	54476099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004463	exon14	c.A2141T	p.N714I	GGAGAGTTGGGTG	.	57.0	20.0	57.0	0.0	.	.	.	Atlas-SNP
IRX2	153572	hgsc.bcm.edu	37	5	2749803	2749803	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	IRX2,NS,carcinoma,0,1	IRX2	NM_001134222	exon2	c.G348A	p.A116A	GCGGTACGCGGGG	.	52.0	16.0	57.0	0.0	.	0	1	Atlas-SNP
RBMS1	5937	hgsc.bcm.edu	37	2	161223862	161223862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_016836	exon2	c.C116A	p.P39H	GTGCTGGGACTGG	.	64.0	4.0	63.0	0.0	.	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	37	14	102505463	102505463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001376	exon60	c.G11332T	p.A3778S	GAGGCTGCAGAGG	.	86.0	4.0	63.0	0.0	.	.	.	Atlas-SNP
ZNF146	7705	hgsc.bcm.edu	37	19	36727687	36727687	+	Silent	SNP	C	C	T	rs369142601		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001099638	exon3	c.C345T	p.L115L	AAACCTCATCAGA	.	98.0	15.0	115.0	0.0	.	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	32663131	32663131	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004006	exon10	c.G1099T	p.E367X	AAATCTCTCCTTG	.	122.0	52.0	74.0	0.0	.	.	.	Atlas-SNP
TP63	8626	hgsc.bcm.edu	37	3	189597936	189597936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001114979	exon11	c.C1433G	p.S478C	GACATTCCAAGCC	.	129.0	33.0	129.0	0.0	.	.	.	Atlas-SNP
FAM98C	147965	hgsc.bcm.edu	37	19	38899499	38899499	+	Missense_Mutation	SNP	C	C	T	rs200637370		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	FAM98C,NS,carcinoma,0,1	FAM98C	NM_174905	exon8	c.C1027T	p.R343C	TGGGGTCGCAAGA	.	139.0	29.0	127.0	0.0	.	0	1	Atlas-SNP
PLIN5	440503	hgsc.bcm.edu	37	19	4529156	4529156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	PLIN5,NS,carcinoma,-1,1	PLIN5	NM_001013706	exon5	c.C449T	p.A150V	TCCACAGCATGGC	.	133.0	39.0	127.0	0.0	.	-1	1	Atlas-SNP
DMGDH	29958	hgsc.bcm.edu	37	5	78347182	78347182	+	Silent	SNP	T	T	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013391	exon5	c.A673C	p.R225R	CTGACCTGGCTTT	.	112.0	36.0	105.0	0.0	.	.	.	Atlas-SNP
PLIN5	440503	hgsc.bcm.edu	37	19	4529157	4529157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	PLIN5,NS,carcinoma,0,1	PLIN5	NM_001013706	exon5	c.G448T	p.A150S	CCACAGCATGGCT	.	132.0	39.0	127.0	0.0	.	0	1	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	37	7	150645544	150645544	+	Missense_Mutation	SNP	G	G	T	rs199473433	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	KCNH2,NS,adenocarcinoma,+1,1	KCNH2	NM_000238	exon11	c.C2680A	p.R894S	CCGTGCGCCTGCG	.	30.0	2.0	23.0	0.0	.	+1	1	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	3150	3150	+	RNA	SNP	T	T	C	rs28656364	bycluster	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	.	.	.	.	AAGGCCTACTTCA	.	28.0	4.0	10.0	0.0	.	.	.	Atlas-SNP
CBL	867	hgsc.bcm.edu	37	11	119149218	119149218	+	Splice_Site	SNP	A	A	G	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	CBL,colon,carcinoma,0,7	CBL	NM_005188	exon9	c.1228-2A>G	.	TTCTGCAGGAATC	.	88.0	46.0	159.0	0.0	.	0	7	Atlas-SNP
IFT140	9742	hgsc.bcm.edu	37	16	1634408	1634408	+	Missense_Mutation	SNP	T	T	C	rs369998823		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014714	exon11	c.A1169G	p.K390R	AGGTTCTTCCTGG	.	25.0	5.0	27.0	0.0	.	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	37	22	46763694	46763694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014246	exon28	c.G8011A	p.G2671R	GCAGCCCCAGCAG	.	107.0	26.0	75.0	0.0	.	.	.	Atlas-SNP
