Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
SMOX	54498	hgsc.bcm.edu	37	20	4162476	4162476	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SMOX	NM_175839	exon4	c.461delT	p.F154fs	.	.	113.0	11.0	116.0	0.0	.	119	.	Atlas-Indel
AGBL4	84871	hgsc.bcm.edu	37	1	50163073	50163073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_032785	exon3	c.A194G	p.E65G	TCATACTCAAACT	.	347.0	33.0	262.0	0.0	.	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	67.0	10.0	54.0	0.0	.	.	.	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44248976	44248976	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001193466	exon2	c.G534A	p.G178G	TTTTCCCCCATTG	.	91.0	5.0	99.0	0.0	.	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	37	5	140953563	140953563	+	Silent	SNP	T	T	A	rs374236039		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	DIAPH1,NS,carcinoma,0,1	DIAPH1	NM_005219	exon16	c.A1854T	p.P618P	AGGAGGTGGAGGA	.	24.0	4.0	26.0	1.0	.	0	1	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	37	20	50408195	50408195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_020436	exon2	c.G827A	p.S276N	TTCTGGCTGAGCA	.	47.0	5.0	45.0	0.0	.	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811099	140811099	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	MAML3_ENST00000509479,caecum,carcinoma,0,12	MAML3_ENST00000509479	NM_018717	exon2	c.G1491A	p.Q497Q	CTGCTGCTGCTGC	.	64.0	4.0	55.0	0.0	.	0	12	Atlas-SNP
ARHGAP6	395	hgsc.bcm.edu	37	X	11197553	11197553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_006125	exon7	c.G1349T	p.R450L	ATCCCACGGTCAA	.	68.0	4.0	52.0	0.0	.	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	37	6	74228474	74228474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	EEF1A1,NS,carcinoma,0,2	EEF1A1	NM_001402	exon5	c.G719A	p.R240H	GTTGGACGAGTTG	.	113.0	5.0	110.0	0.0	.	0	2	Atlas-SNP
ADH1B	125	hgsc.bcm.edu	37	4	100232749	100232749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ADH1B,NS,carcinoma,-1,1	ADH1B	NM_000668	exon7	c.C893A	p.A298D	TGGGAAGCAGGAG	.	113.0	5.0	114.0	0.0	.	-1	1	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	37	13	45148708	45148708	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	TSC22D1,NS,carcinoma,0,4	TSC22D1	NM_183422	exon1	c.G1503A	p.Q501Q	TTGTTGCTGCTGC	.	91.0	6.0	98.0	0.0	.	0	4	Atlas-SNP
CES4A	283848	hgsc.bcm.edu	37	16	67036993	67036993	+	Silent	SNP	G	G	T	rs181709052	by1000genomes;alternate_allele	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_173815	exon6	c.G711T	p.S237S	AGCCTCGGGTCTC	.	82.0	4.0	152.0	0.0	.	.	.	Atlas-SNP
