Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
IQGAP1	8826	hgsc.bcm.edu	37	15	91037943	91037944	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	IQGAP1	.	.	.	.	.	.	160.0	12.0	187.0	0.0	.	140	.	Atlas-Indel
KIT	3815	hgsc.bcm.edu	37	4	55593661	55593661	+	Missense_Mutation	SNP	T	T	C	rs121913513		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	KIT,NS,malignant_melanoma,0,86	KIT	NM_000222	exon11	c.T1727C	p.L576P	CACAACTTCCTTA	.	92.0	5.0	104.0	0.0	.	0	86	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52194891	52194891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_006526	exon2	c.C1465T	p.H489Y	TGAGATGAATATT	.	471.0	39.0	548.0	0.0	.	.	.	Atlas-SNP
BCL9	607	hgsc.bcm.edu	37	1	147084715	147084715	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	BCL9_ENST00000234739,right_upper_lobe,carcinoma,0,1	BCL9_ENST00000234739	NM_004326	exon5	c.T87C	p.R29R	GGTCCGTCCCCCT	.	61.0	3.0	74.0	0.0	.	0	1	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100682117	100682117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	MUC17,right_upper_lobe,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.G7420A	p.G2474S	GAGGCTGGCACCC	.	99.0	5.0	125.0	1.0	.	-2	1	Atlas-SNP
DNMT1	1786	hgsc.bcm.edu	37	19	10291231	10291231	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001130823	exon4	c.T240C	p.A80A	GACTTTAGCCAGG	.	61.0	8.0	90.0	0.0	.	.	.	Atlas-SNP
RNR2	6053	hgsc.bcm.edu	37	MT	2333	2333	+	RNA	SNP	G	G	A	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	.	.	.	.	TCCTCCGCATAAG	.	32.0	10.0	11.0	0.0	.	.	.	Atlas-SNP
RPS5	6193	hgsc.bcm.edu	37	19	58904766	58904766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001009	exon4	c.G359T	p.G120V	ACAGTGGTCCCCG	.	33.0	8.0	51.0	0.0	.	.	.	Atlas-SNP
TMX2	51075	hgsc.bcm.edu	37	11	57505458	57505458	+	Silent	SNP	G	G	A	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_015959	exon3	c.G324A	p.L108L	CCGCTTGGATATT	.	121.0	18.0	209.0	0.0	.	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78780952	78780952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001098816	exon5	c.C38G	p.T13S	CGCCGGGTCAGCG	.	34.0	7.0	63.0	0.0	.	.	.	Atlas-SNP
