Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Algorithm
NCL	4691	hgsc.bcm.edu	37	2	232325382	232325384	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	NCL	NM_005381	exon4	c.808_810del	p.270_270del	.	.	193.0	16.0	139.0	0.0	.	80	.	Atlas-Indel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	145.0	13.0	112.0	0.0	.	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	37	6	127804080	127804080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	C6orf174,right_upper_lobe,carcinoma,0,1	C6orf174	NM_001012279	exon5	c.A1535G	p.K512R	TGAGCCTTTTTTT	.	120.0	6.0	91.0	1.0	.	0	1	Atlas-SNP
SNORD119	100113378	hgsc.bcm.edu	37	20	2443617	2443617	+	RNA	SNP	A	A	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	TCTCAGAGTAATC	.	68.0	4.0	38.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129958	175129958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001162895	exon3	c.G192C	p.K64N	CTTGTTCTTCTCT	.	146.0	8.0	103.0	0.0	.	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	37	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001162895	exon3	c.T228G	p.D76E	TTCTTCATCCTTC	.	146.0	10.0	116.0	0.0	.	.	.	Atlas-SNP
TDRD12	91646	hgsc.bcm.edu	37	19	33247972	33247972	+	Silent	SNP	A	A	G	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001110822	exon8	c.A801G	p.Q267Q	GGCACAATCTCTG	.	404.0	32.0	313.0	0.0	.	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940633	144940633	+	Silent	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_031308	exon1	c.G6789A	p.L2263L	CGCCTCCAGCAGC	.	77.0	7.0	46.0	0.0	.	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	110.0	6.0	67.0	1.0	.	0	1	Atlas-SNP
IGSF23	147710	hgsc.bcm.edu	37	19	45130819	45130819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001205280	exon3	c.G494A	p.G165E	TCCTGGGAGCCGG	.	227.0	10.0	178.0	0.0	.	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	37	3	18458414	18458414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	SATB1,NS,carcinoma,-1,1	SATB1	NM_002971	exon3	c.G368A	p.S123N	GCAGAGCTATGTG	.	99.0	6.0	83.0	0.0	.	-1	1	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225539365	225539365	+	Silent	SNP	T	T	C	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001373	exon70	c.T11034C	p.G3678G	AATAGGTGAAAGT	.	216.0	18.0	154.0	0.0	.	.	.	Atlas-SNP
TCN1	6947	hgsc.bcm.edu	37	11	59620746	59620746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	TCN1,NS,carcinoma,-2,2	TCN1	NM_001062	exon8	c.G1170T	p.Q390H	TAGGCCCTGAATA	.	119.0	5.0	92.0	0.0	.	-2	2	Atlas-SNP
