Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACTRT2	140625	genome.wustl.edu	37	1	2939292	2939292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_080431.4	+1	reviewed	p.V348I	1.000	81	0%	93	14%	0	-	unknown(0)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MEGF6	1953	genome.wustl.edu	37	1	3425250	3425250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001409.3	-1	validated	p.C511Y	1.000	95	0%	57	28.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3CD	5293	genome.wustl.edu	37	1	9778814	9778814	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005026.3	+1	validated	p.S361	0.817	120	0%	104	20.2%	23	0%	-	-	-	HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
SPEN	23013	genome.wustl.edu	37	1	16264058	16264058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015001.2	+1	reviewed	p.T3476I	0.003	251	0%	283	11.7%	49	32.6%	unknown(0)	tolerated(0.07)	-	NULL
PADI3	51702	genome.wustl.edu	37	1	17593271	17593271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016233.2	+1	reviewed	p.R156C	0.837	317	0%	319	19.1%	0	-	benign(0.017)	tolerated(0.07)	neutral(0.320)	HMMPfam_PAD_M,superfamily_PAD_central
CDA	978	genome.wustl.edu	37	1	20931506	20931506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001785.2	+1	reviewed	p.K80N	0.380	237	0.4%	204	20.1%	18	11.1%	possibly_damaging(0.529)	deleterious(0.04)	deleterious(0.527)	HMMPfam_dCMP_cyt_deam_1,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
COL16A1	1307	genome.wustl.edu	37	1	32150442	32150442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001856.3	-1	reviewed	p.R678C	1.000	137	0%	128	18%	7	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
RIMS3	9783	genome.wustl.edu	37	1	41107589	41107589	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014747.2	-1	validated	p.N3	1.000	44	0%	39	20.5%	0	-	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65304196	65304196	+	Silent	SNP	G	G	A	rs34680086	byCluster;by1000genomes	TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002227.2	-1	reviewed	p.N973	1.000	315	0%	240	10.8%	16	6.2%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
COL11A1	1301	genome.wustl.edu	37	1	103471421	103471421	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_080629.2	-1	reviewed	p.P618	0.427	71	0%	57	12.3%	0	-	-	-	-	HMMPfam_Collagen
TARS2	80222	genome.wustl.edu	37	1	150471415	150471415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_025150.3	+1	provisional	p.V482I	1.000	255	0%	272	24.3%	64	60.9%	benign(0.073)	tolerated(0.14)	neutral(0.255)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
ADAMTSL4	54507	genome.wustl.edu	37	1	150528747	150528747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_019032.4	+1	reviewed	p.R494Q	0.219	124	0%	115	13%	1	0%	possibly_damaging(0.682)	tolerated(0.55)	neutral(0.250)	HMMPfam_ADAM_spacer1
KRTCAP2	200185	genome.wustl.edu	37	1	155145239	155145239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_173852.3	-1	validated	p.S71L	1.000	140	0%	171	17%	407	27.7%	possibly_damaging(0.477)	deleterious(0)	deleterious(0.602)	HMMPfam_Keratin_assoc
FDPS	2224	genome.wustl.edu	37	1	155290213	155290215	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001135821.1	+1	reviewed	p.K359in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth
NES	10763	genome.wustl.edu	37	1	156642346	156642346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006617.1	-1	reviewed	p.T545I	0.001	113	0%	89	12.4%	0	-	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
FCRL3	115352	genome.wustl.edu	37	1	157665865	157665865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_052939.3	-1	reviewed	p.P366H	0.041	170	0%	173	13.3%	0	-	possibly_damaging(0.904)	deleterious(0.01)	deleterious(0.764)	HMMSmart_SM00409,superfamily_Immunoglobulin
KCNJ10	3766	genome.wustl.edu	37	1	160012244	160012244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002241.3	-1	reviewed	p.R27W	0.172	166	0%	146	12.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Voltage-gated potassium channels
DUSP12	11266	genome.wustl.edu	37	1	161719795	161719795	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_007240.1	+1	reviewed	p.A68	0.000	48	0%	37	16.2%	38	18.4%	-	-	-	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
POU2F1	5451	genome.wustl.edu	37	1	167370746	167370746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002697.2	+1	provisional	p.P480L	1.000	224	0%	243	20.2%	34	17.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PRRX1	5396	genome.wustl.edu	37	1	170695497	170695497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_022716.2	+1	reviewed	p.P185L	1.000	100	0%	103	10.7%	96	11.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SWT1	54823	genome.wustl.edu	37	1	185143815	185143816	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001105518.1	+1	validated	p.K182fs	0.936:0.183	-	-	-	-	-	-	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185833699	185833699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_031935.2	+1	reviewed	p.R146Q	1.000	318	0.3%	323	16.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_vWA-like
LEFTY1	10637	genome.wustl.edu	37	1	226074646	226074647	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020997.2	-1	reviewed	p.V294fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501
NID1	4811	genome.wustl.edu	37	1	236175242	236175242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002508.2	-1	reviewed	p.G836C	1.000	178	0%	189	18%	45	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA
OR1C1	26188	genome.wustl.edu	37	1	247921196	247921196	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012353.2	-1	validated	p.S171	0.997	163	0%	225	15.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
POLR1A	25885	genome.wustl.edu	37	2	86308804	86308804	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015425.3	-1	validated	p.S281	0.056	211	0.5%	157	17.2%	3	0%	-	-	-	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CHMP3	51652	genome.wustl.edu	37	2	86737576	86737576	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016079.2	-1	reviewed	p.Q105*	1.000	202	0%	185	20%	87	4.5%	-	-	-	HMMPfam_Snf7
INPP4A	3631	genome.wustl.edu	37	2	99182574	99182574	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001134224.1	+1	reviewed	p.R793*	1.000	47	0%	41	14.6%	10	20%	-	-	-	NULL
SLC9A4	389015	genome.wustl.edu	37	2	103095611	103095611	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001011552.3	+1	validated	p.D190	0.676	98	0%	73	37%	7	28.5%	-	-	-	HMMPfam_Na_H_Exchanger
RGPD4	285190	genome.wustl.edu	37	2	108488590	108488590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_182588.2	+1	validated	p.R1377M	1.000	108	0%	66	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
MIR663B	100313824	genome.wustl.edu	37	2	133014651	133014652	+	RNA	INS	-	-	C	rs111708138		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000408361	-1	known	NULL	0.027:0.014	-	-	-	-	-	-	-	-	-	-
PSMD14	10213	genome.wustl.edu	37	2	162175372	162175372	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005805.4	+1	validated	p.P12	1.000	212	0%	164	14%	25	48%	-	-	-	NULL
LRP2	4036	genome.wustl.edu	37	2	170022538	170022538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004525.2	-1	reviewed	p.R3888C	1.000	284	0.4%	213	18.8%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
RBM45	129831	genome.wustl.edu	37	2	178980989	178980989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152945.2	+1	provisional	p.V101I	1.000	207	0%	134	13.4%	11	36.3%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TTN	7273	genome.wustl.edu	37	2	179422832	179422832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_133378.4	-1	reviewed	p.S26515F	0.000	82	1.2%	54	16.7%	0	-	-	-	-	NULL
UBE2E3	10477	genome.wustl.edu	37	2	181846920	181846921	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006357.2	+1	reviewed	p.S52fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
COL4A3	1285	genome.wustl.edu	37	2	228167816	228167816	+	Silent	SNP	A	A	G	rs189574905	by1000genomes	TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000091.3	+1	reviewed	p.P1315	0.823	338	0%	261	16.1%	0	-	-	-	-	HMMPfam_Collagen
ANKMY1	51281	genome.wustl.edu	37	2	241494437	241494439	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_017844.2	-1	validated	p.E61in_frame_del	0.503:0.537:0.527	-	-	-	-	-	-	-	-	-	NULL
C3orf20	84077	genome.wustl.edu	37	3	14731511	14731511	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032137.4	+1	validated	p.L211	0.000	192	0%	150	16%	0	-	-	-	-	NULL
TRIM71	131405	genome.wustl.edu	37	3	32933115	32933115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039111.1	+1	provisional	p.R807C	1.000	62	0%	72	18.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_NHL,superfamily_SSF101898
PLCD1	5333	genome.wustl.edu	37	3	38053062	38053062	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001130964.1	-1	validated	p.D198	0.519	312	0%	306	15.4%	19	47.3%	-	-	-	superfamily_SSF47473
NBEAL2	23218	genome.wustl.edu	37	3	47038872	47038872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015175.1	+1	validated	p.T925A	1.000	150	0%	142	19.7%	8	12.5%	possibly_damaging(0.633)	tolerated(0.62)	neutral(0.225)	NULL
COL7A1	1294	genome.wustl.edu	37	3	48624082	48624082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000094.3	-1	reviewed	p.F1106C	1.000	74	0%	59	13.6%	16	0%	unknown(0)	deleterious(0)	-	HMMPfam_VWA,superfamily_vWA-like
USP19	10869	genome.wustl.edu	37	3	49152250	49152250	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006677.1	-1	provisional	p.V643	0.990	157	0%	150	18.7%	80	47.5%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
LOC646498	646498	genome.wustl.edu	37	3	49215179	49215179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001080528.2	-1	validated	p.V169I	0.003	139	0%	102	16.7%	0	-	-	-	-	NULL
NPRL2	10641	genome.wustl.edu	37	3	50385588	50385588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006545.4	-1	validated	p.R300H	1.000	187	0%	187	20.3%	41	36.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NPR2
FOXP1	27086	genome.wustl.edu	37	3	71096093	71096093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032682.4	-1	reviewed	p.G222C	1.000	119	0%	106	14.2%	21	0%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
KLF15	28999	genome.wustl.edu	37	3	126070900	126070900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014079.3	-1	validated	p.K289M	1.000	116	0%	101	26.7%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126733132	126733132	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032242.3	+1	validated	p.R817*	1.000	16	0%	12	33.3%	47	4.2%	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
COL6A6	131873	genome.wustl.edu	37	3	130367970	130367970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001102608.1	+1	provisional	p.R1766Q	0.157	137	0%	93	25.8%	0	-	probably_damaging(0.971)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PEX5L	51555	genome.wustl.edu	37	3	179533661	179533661	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016559.1	-1	provisional	p.P357	0.966	221	0%	201	12.4%	0	-	-	-	-	superfamily_TPR-like
TTC14	151613	genome.wustl.edu	37	3	180322094	180322094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_133462.3	+1	validated	p.R190*	1.000	111	0%	84	22.6%	4	0%	-	-	-	superfamily_Nucleic acid-binding proteins
MFI2	4241	genome.wustl.edu	37	3	196733536	196733536	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005929.4	-1	reviewed	p.R608fs	0.955	-	-	-	-	-	-	-	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II
MIR922	100126321	genome.wustl.edu	37	3	197401443	197401443	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000401223	-1	known	NULL	0.000	172	0%	167	13.2%	7	57.1%	-	-	-	-
GSX2	170825	genome.wustl.edu	37	4	54966538	54966538	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_133267.2	+1	validated	p.S9	0.999	68	0%	41	19.5%	0	-	-	-	-	NULL
GSX2	170825	genome.wustl.edu	37	4	54968027	54968027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_133267.2	+1	validated	p.E285K	0.998	99	0%	94	25.5%	0	-	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	NULL
CABS1	85438	genome.wustl.edu	37	4	71201006	71201006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_033122.3	+1	validated	p.D84N	0.000	70	0%	41	17.1%	0	-	benign(0.224)	tolerated(0.84)	neutral(0.022)	NULL
GK2	2712	genome.wustl.edu	37	4	80329033	80329033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_033214.2	-1	validated	p.L108I	0.998	209	0%	209	15.8%	0	-	possibly_damaging(0.805)	tolerated(0.1)	deleterious(0.589)	HMMPfam_FGGY_N,superfamily_SSF53067
MRPS18C	51023	genome.wustl.edu	37	4	84382343	84382343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016067.2	+1	reviewed	p.R141Q	0.013	146	0%	116	13.8%	11	27.2%	benign(0.003)	tolerated(0.12)	neutral(0.261)	NULL
H2AFZ	3015	genome.wustl.edu	37	4	100869968	100869968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002106.3	-1	reviewed	p.G109C	1.000	157	0%	116	14.7%	278	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00414
BANK1	55024	genome.wustl.edu	37	4	102946405	102946405	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_017935.4	+1	reviewed	p.Q445*	0.000	343	0%	284	16.2%	6	0%	-	-	-	superfamily_Ankyrin repeat
CENPE	1062	genome.wustl.edu	37	4	104079590	104079590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001813.2	-1	validated	p.R967Q	1.000	82	0%	42	28.6%	0	-	possibly_damaging(0.838)	tolerated(0.52)	neutral(0.329)	NULL
KLKB1	3818	genome.wustl.edu	37	4	187130329	187130329	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000511608	+1	known	p.P35L	0.686	143	0%	114	23.7%	13	30.7%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
SLC6A3	6531	genome.wustl.edu	37	5	1406362	1406362	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001044.4	-1	reviewed	p.Q514*	0.683	38	0%	33	30.3%	0	-	-	-	-	HMMPfam_SNF
ADAMTS16	170690	genome.wustl.edu	37	5	5303495	5303495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_139056.2	+1	reviewed	p.S968R	0.971	25	0%	25	20%	0	-	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MTRR	4552	genome.wustl.edu	37	5	7897318	7897318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024010.2	+1	reviewed	p.A664V	0.585	145	0%	105	14.3%	17	35.2%	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
DNAH5	1767	genome.wustl.edu	37	5	13829759	13829759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001369.2	-1	reviewed	p.R2102C	1.000	174	0%	145	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,superfamily_SSF52540
CDH12	1010	genome.wustl.edu	37	5	21802371	21802371	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004061.3	-1	reviewed	p.P387	0.000	145	0.7%	128	21.9%	0	-	-	-	-	superfamily_Cadherin
HTR1A	3350	genome.wustl.edu	37	5	63256356	63256356	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000524.2	-1	validated	p.P397	0.028	119	0%	80	21.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIK3R1	5295	genome.wustl.edu	37	5	67591135	67591136	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_181523.1	+1	reviewed	p.D578fs	0.016:0.975	-	-	-	-	-	-	-	-	-	NULL
ARSK	153642	genome.wustl.edu	37	5	94927197	94927197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_198150.2	+1	validated	p.R322*	0.998	185	0%	135	15.6%	2	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PCDHA3	56145	genome.wustl.edu	37	5	140182188	140182188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018906.2	+1	reviewed	p.P469L	0.311	114	0%	98	23.5%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140202609	140202609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018908.2	+1	reviewed	p.V417M	0.000	82	0%	64	15.6%	0	-	benign(0.019)	tolerated(0.08)	neutral(0.301)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209604	140209604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018909.2	+1	reviewed	p.P643L	0.000	60	0%	34	17.6%	5	80%	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB10	56126	genome.wustl.edu	37	5	140573648	140573648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018930.3	+1	reviewed	p.A508V	0.987	180	0%	135	11.1%	34	0%	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGC5	56097	genome.wustl.edu	37	5	140869472	140869472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018929.2	+1	reviewed	p.R222H	0.037	86	0%	71	23.9%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LARS	51520	genome.wustl.edu	37	5	145508248	145508248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020117.9	-1	reviewed	p.R956H	0.950	448	0%	383	16.2%	54	37%	possibly_damaging(0.719)	deleterious(0.01)	deleterious(0.666)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
HMGXB3	22993	genome.wustl.edu	37	5	149431382	149431382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014983.2	+1	validated	p.T1169M	0.013	159	0%	128	24.2%	132	40.1%	benign(0.129)	deleterious(0.01)	neutral(0.417)	NULL
GABRB2	2561	genome.wustl.edu	37	5	160721219	160721219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_021911.2	-1	reviewed	p.R470C	1.000	230	0%	198	17.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
PXDC1	221749	genome.wustl.edu	37	6	3738312	3738312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000380277	-1	known	p.R57Q	0.076	405	0%	316	18.7%	15	13.3%	-	-	-	superfamily_PX domain
TRIM10	10107	genome.wustl.edu	37	6	30128423	30128423	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006778.3	-1	validated	p.P71	0.989	211	0%	203	21.7%	0	-	-	-	-	superfamily_RING/U-box
HSPA1L	3305	genome.wustl.edu	37	6	31778313	31778313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005527.3	-1	reviewed	p.T479	0.999	152	0.7%	142	16.9%	4	0%	-	-	-	HMMPfam_HSP70,superfamily_SSF100920
RGL2	5863	genome.wustl.edu	37	6	33263987	33263987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004761.3	-1	validated	p.A196T	1.000	113	0%	69	15.9%	31	38.7%	benign(0.29)	tolerated(0.24)	neutral(0.127)	HMMSmart_SM00229,superfamily_Ras GEF
RSPH9	221421	genome.wustl.edu	37	6	43638632	43638634	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTA	CTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152732.3	+1	provisional	p.Y260in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47847631	47847631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001013732.3	-1	validated	p.R300W	1.000	39	0%	44	29.5%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Patched,superfamily_SSF82866
LRRC1	55227	genome.wustl.edu	37	6	53761633	53761633	+	Silent	SNP	T	T	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018214.4	+1	validated	p.L170	0.995	63	0%	44	27.3%	7	42.8%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
HTR1B	3351	genome.wustl.edu	37	6	78173085	78173085	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000863.1	-1	provisional	p.P12	0.004	139	0%	124	15.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ZNF292	23036	genome.wustl.edu	37	6	87965625	87965625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015021.1	+1	validated	p.G760C	0.952	97	0%	76	25%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GJA10	84694	genome.wustl.edu	37	6	90604916	90604916	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032602.1	+1	validated	p.Y243	0.925	143	0%	99	13.1%	0	-	-	-	-	NULL
PRDM1	639	genome.wustl.edu	37	6	106553306	106553306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001198.3	+1	reviewed	p.G424V	0.988	53	0%	54	18.5%	24	16.6%	possibly_damaging(0.728)	deleterious(0.01)	deleterious(0.671)	NULL
TULP4	56995	genome.wustl.edu	37	6	158735185	158735185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020245.3	+1	validated	p.L46P	1.000	176	0%	142	18.3%	14	35.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAS1	4142	genome.wustl.edu	37	6	160328568	160328568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002377.2	+1	reviewed	p.L194P	0.991	178	0%	182	15.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
JAZF1	221895	genome.wustl.edu	37	7	27934920	27934920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_175061.3	-1	reviewed	p.R102C	1.000	70	0%	48	25%	46	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DTX2	113878	genome.wustl.edu	37	7	76111931	76111931	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001102594.1	+1	validated	p.E125	0.993	83	0%	67	22.4%	79	43%	-	-	-	HMMPfam_WWE,HMMSmart_SM00678
SEMA3E	9723	genome.wustl.edu	37	7	82997202	82997204	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012431.2	-1	reviewed	p.E676in_frame_del	0.111:0.544:0.574	-	-	-	-	-	-	-	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84710841	84710841	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152754.2	-1	validated	p.D123H	1.000	293	0%	209	12.9%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GRM3	2913	genome.wustl.edu	37	7	86416314	86416314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000840.2	+1	reviewed	p.H402	0.976	175	0%	152	21.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
BET1	10282	genome.wustl.edu	37	7	93625532	93625532	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000425626	-1	known	p.F82	0.001	92	0%	56	17.9%	0	-	-	-	-	NULL
CYP3A7	1551	genome.wustl.edu	37	7	99328764	99328764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000765.3	-1	reviewed	p.R28H	0.000	257	0%	186	17.7%	0	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114271581	114271583	+	Splice_Site	DEL	CAG	CAG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_148898.2	+1	reviewed	e6-1	0.101:0.135	-	-	-	-	-	-	-	-	-	-
CFTR	1080	genome.wustl.edu	37	7	117199683	117199683	+	Missense_Mutation	SNP	G	G	A	rs77646904	byCluster;byFrequency;by1000genomes	TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000492.3	+1	reviewed	p.V520I	1.000	102	0%	68	13.2%	0	-	benign(0.305)	deleterious(0.02)	deleterious(0.478)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZYX	7791	genome.wustl.edu	37	7	143080164	143080164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001010972.1	+1	reviewed	p.S258A	0.304	146	0%	111	16.2%	35	11.4%	benign(0.016)	tolerated(0.98)	neutral(0.001)	NULL
AGAP3	116988	genome.wustl.edu	37	7	150815321	150815321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_031946.4	+1	validated	p.R244Q	0.999	91	0%	80	17.5%	112	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
LMBR1	64327	genome.wustl.edu	37	7	156619408	156619408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000434278	-1	known	p.V33I	0.994	147	0%	107	15.9%	35	40%	benign(0.382)	-	-	NULL
TTI2	80185	genome.wustl.edu	37	8	33367287	33367287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001102401.1	-1	validated	p.L271F	1.000	216	0%	201	19.4%	29	31%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_DUF2454
ADRB3	155	genome.wustl.edu	37	8	37823533	37823533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000025.2	-1	reviewed	p.R152H	0.998	46	0%	40	15%	0	-	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TOX	9760	genome.wustl.edu	37	8	59720752	59720752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014729.2	-1	reviewed	p.M490T	1.000	225	0%	173	19.1%	41	56%	possibly_damaging(0.484)	tolerated(0.35)	neutral(0.181)	NULL
DCAF4L2	138009	genome.wustl.edu	37	8	88885088	88885088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152418.3	-1	validated	p.R371H	0.876	193	0.5%	155	13.5%	0	-	benign(0.065)	tolerated(0.1)	neutral(0.291)	NULL
TMEM74	157753	genome.wustl.edu	37	8	109796598	109796598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_153015.1	-1	provisional	p.V244I	0.998	169	0.6%	159	15.7%	0	-	possibly_damaging(0.653)	tolerated(0.16)	neutral(0.289)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5923227	5923227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001017969.2	-1	validated	p.P923	0.310	142	0%	116	23.3%	4	0%	-	-	-	NULL
TLN1	7094	genome.wustl.edu	37	9	35706498	35706498	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006289.3	-1	reviewed	p.I1713	0.976	131	0%	123	18.7%	73	34.2%	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79325686	79325686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015225.2	-1	validated	p.A502P	0.999	68	0%	57	10.5%	1	0%	possibly_damaging(0.597)	deleterious(0.01)	deleterious(0.612)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98221975	98221975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000264.3	-1	reviewed	p.V932I	0.971	251	0%	296	21.3%	51	9.8%	benign(0.081)	tolerated(0.24)	neutral(0.043)	HMMPfam_Patched
STRBP	55342	genome.wustl.edu	37	9	125895153	125895153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018387.4	-1	validated	p.A623V	1.000	172	0%	147	21.1%	44	47.7%	benign(0.355)	deleterious(0.02)	deleterious(0.495)	NULL
CIZ1	25792	genome.wustl.edu	37	9	130947845	130947847	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001131016.1	-1	validated	p.S190in_frame_del	0.000:0.002:0.001	-	-	-	-	-	-	-	-	-	NULL
DDX31	64794	genome.wustl.edu	37	9	135522427	135522427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_022779.7	-1	reviewed	p.D434V	0.756	113	0%	95	26.3%	11	45.4%	possibly_damaging(0.574)	deleterious(0.04)	deleterious(0.546)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPSM1	26086	genome.wustl.edu	37	9	139250948	139250948	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001145638.1	+1	validated	p.H589	0.515	36	0%	32	28.1%	7	14.2%	-	-	-	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs147271628	byCluster;by1000genomes	TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003086.2	-1	validated	p.S542in_frame_del	0.000:0.005:0.005	-	-	-	-	-	-	-	-	-	NULL
AGPAT2	10555	genome.wustl.edu	37	9	139571064	139571064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006412.3	-1	reviewed	p.G187	0.042	93	0%	77	10.4%	304	44.4%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
ABCA2	20	genome.wustl.edu	37	9	139902941	139902941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_212533.2	-1	reviewed	p.R2431Q	1.000	66	0%	52	26.9%	52	28.8%	benign(0.066)	tolerated(0.12)	neutral(0.265)	NULL
DIP2C	22982	genome.wustl.edu	37	10	410387	410387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014974.2	-1	reviewed	p.R802C	1.000	77	0%	77	13%	12	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF56801
ASB13	79754	genome.wustl.edu	37	10	5682558	5682558	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NR_024581.1	-1	reviewed	NULL	0.000	62	1.6%	63	19%	19	42.1%	-	-	-	-
STAM	8027	genome.wustl.edu	37	10	17737179	17737179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003473.2	+1	reviewed	p.A223T	1.000	192	0%	133	13.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
GPR158	57512	genome.wustl.edu	37	10	25887748	25887748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020752.2	+1	validated	p.R1065C	0.014	115	0%	82	18.3%	0	-	benign(0.034)	tolerated(0.12)	neutral(0.263)	NULL
CUL2	8453	genome.wustl.edu	37	10	35305249	35305251	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003591.2	-1	provisional	p.L586in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin homology domain
RET	5979	genome.wustl.edu	37	10	43610062	43610062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020975.4	+1	reviewed	p.A672S	0.999	140	0%	142	14.8%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
ZNF488	118738	genome.wustl.edu	37	10	48371149	48371149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_153034.2	+1	provisional	p.R206Q	0.000	182	0%	119	13.4%	0	-	benign(0.126)	tolerated(0.6)	neutral(0.015)	NULL
CCDC6	8030	genome.wustl.edu	37	10	61566823	61566823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005436.3	-1	validated	p.M287I	1.000	254	0%	210	23.3%	19	52.6%	benign(0.011)	tolerated(0.28)	neutral(0.032)	HMMPfam_DUF2046
DDX21	9188	genome.wustl.edu	37	10	70716048	70716048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004728.2	+1	reviewed	p.L23V	0.000	152	0%	113	14.2%	2	50%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
UNC5B	219699	genome.wustl.edu	37	10	73053616	73053616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_170744.3	+1	validated	p.A701T	1.000	45	0%	35	20%	20	15%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
MMRN2	79812	genome.wustl.edu	37	10	88703164	88703166	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024756.2	-1	validated	p.E459in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89624274	89624274	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000371953	+1	known	p.Y16*	1.000	355	0%	277	31%	24	66.6%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
C10orf76	79591	genome.wustl.edu	37	10	103735012	103735014	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024541.2	-1	validated	p.K484in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1741
PSD	5662	genome.wustl.edu	37	10	104176356	104176356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002779.3	-1	provisional	p.R147Q	0.532	37	0%	33	24.2%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
TACC2	10579	genome.wustl.edu	37	10	123809994	123809994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000491540	+1	known	p.R42W	0.001	120	0%	97	14.4%	2	50%	-	-	-	NULL
DHX32	55760	genome.wustl.edu	37	10	127529525	127529525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018180.2	-1	reviewed	p.E528D	1.000	179	0%	160	17.5%	29	41.3%	benign(0.151)	tolerated(0.44)	neutral(0.026)	HMMPfam_HA2
TTC40	54777	genome.wustl.edu	37	10	134664771	134664771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000368586	-1	known	p.A1871	0.014	109	0%	74	23%	5	40%	-	-	-	NULL
RNH1	6050	genome.wustl.edu	37	11	498925	498925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002939.3	-1	validated	p.S208I	0.000	41	0%	31	19.4%	194	34%	probably_damaging(0.978)	tolerated(0.14)	deleterious(0.670)	superfamily_SSF52047
DEAF1	10522	genome.wustl.edu	37	11	681021	681021	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_021008.2	-1	validated	p.P313	0.000	449	0.4%	405	17.3%	80	41.2%	-	-	-	NULL
OR51S1	119692	genome.wustl.edu	37	11	4870114	4870114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001004758.1	-1	provisional	p.M109V	1.000	119	0%	95	20%	0	-	possibly_damaging(0.808)	deleterious(0.04)	deleterious(0.653)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COPB1	1315	genome.wustl.edu	37	11	14515258	14515258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001144061.1	-1	reviewed	p.R141C	1.000	202	0.5%	170	19.4%	34	47%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
NAV2	89797	genome.wustl.edu	37	11	20122677	20122677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_182964.5	+1	validated	p.G2129R	0.962	116	0%	72	15.3%	95	61%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC6A5	9152	genome.wustl.edu	37	11	20622931	20622931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004211.3	+1	reviewed	p.A87V	0.004	26	0%	15	33.3%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46797908	46797908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001008938.1	-1	validated	p.A963V	1.000	220	0%	158	16.5%	9	44.4%	benign(0.007)	tolerated(0.17)	neutral(0.059)	superfamily_ARM repeat
MYBPC3	4607	genome.wustl.edu	37	11	47362771	47362771	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000256.3	-1	reviewed	p.D605	1.000	108	0%	74	18.9%	1	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
LOC646754	646754	genome.wustl.edu	37	11	49080445	49080445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	XM_929704.3	-1	model	p.A74T	0.026	139	0.7%	113	23.9%	0	-	benign(0.327)	tolerated(0.19)	neutral(0.152)	superfamily_RING/U-box
MPEG1	219972	genome.wustl.edu	37	11	58978599	58978599	+	Silent	SNP	G	G	A	rs186140164	by1000genomes	TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039396.1	-1	validated	p.S580	0.004	73	0%	72	13.9%	24	0%	-	-	-	NULL
CD6	923	genome.wustl.edu	37	11	60786735	60786735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006725.3	+1	validated	p.S651N	0.000	70	0%	65	24.6%	8	0%	unknown(0)	deleterious(0.05)	-	NULL
PLCB3	5331	genome.wustl.edu	37	11	64024175	64024175	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000932.2	+1	reviewed	p.T317	0.260	226	0%	247	17.4%	62	19.3%	-	-	-	HMMSmart_SM00148,superfamily_EF-hand
RPS6KB2	6199	genome.wustl.edu	37	11	67201718	67201718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003952.2	+1	reviewed	p.R340H	0.003	148	0%	105	26.7%	91	43.9%	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	HMMSmart_S_TK_X,superfamily_Kinase_like
MRGPRF	116535	genome.wustl.edu	37	11	68773441	68773441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001098515.1	-1	validated	p.D113N	0.869	48	0%	27	33.3%	15	0%	possibly_damaging(0.826)	tolerated(0.28)	neutral(0.345)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANO1	55107	genome.wustl.edu	37	11	70034007	70034007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018043.5	+1	validated	p.R953L	0.000	89	0%	97	22.7%	298	38.2%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76237644	76237644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020193.3	+1	validated	p.T654A	1.000	195	0%	158	16.5%	7	42.8%	unknown(0)	deleterious(0)	-	NULL
ABCG4	64137	genome.wustl.edu	37	11	119025032	119025032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001142505.1	+1	reviewed	p.R140H	1.000	145	0%	113	23%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SIAE	54414	genome.wustl.edu	37	11	124508448	124508450	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_170601.3	-1	validated	p.N436in_frame_del	0.142:0.101:0.063	-	-	-	-	-	-	-	-	-	NULL
KCNJ5	3762	genome.wustl.edu	37	11	128781783	128781783	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000890.3	+1	reviewed	p.N205	0.948	264	0%	207	20.8%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
KDM5A	5927	genome.wustl.edu	37	12	432923	432925	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001042603.1	-1	reviewed	p.E664in_frame_del	1.000:0.980:1.000	-	-	-	-	-	-	-	-	-	NULL
KCNA6	3742	genome.wustl.edu	37	12	4919805	4919805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002235.3	+1	reviewed	p.R200C	1.000	105	0%	85	17.6%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	superfamily_SSF81324
KIAA1467	57613	genome.wustl.edu	37	12	13232887	13232887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020853.1	+1	validated	p.R603C	1.000	139	0.7%	126	19%	4	75%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PLEKHA5	54477	genome.wustl.edu	37	12	19282695	19282695	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NR_026568.1	+1	validated	NULL	0.996	32	0%	18	27.8%	6	66.6%	-	-	-	-
GPD1	2819	genome.wustl.edu	37	12	50501424	50501424	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005276.2	+1	provisional	p.R229	0.895	196	0%	181	20.4%	1	0%	-	-	-	HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like
KRT81	3887	genome.wustl.edu	37	12	52680972	52680972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002281.3	-1	reviewed	p.R387S	0.994	117	0%	102	16.7%	7	0%	possibly_damaging(0.685)	deleterious(0)	deleterious(0.689)	HMMPfam_Filament
UTP20	27340	genome.wustl.edu	37	12	101702086	101702086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014503.2	+1	validated	p.V707I	1.000	187	0%	125	13.6%	1	0%	probably_damaging(0.982)	tolerated(0.31)	neutral(0.454)	superfamily_ARM repeat
C12orf34	84915	genome.wustl.edu	37	12	110205933	110205933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032829.2	+1	validated	p.I67V	1.000	56	0%	68	25%	12	16.6%	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
HNF1A	6927	genome.wustl.edu	37	12	121426650	121426650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000545.5	+1	reviewed	p.R114H	0.974	142	0%	122	17.2%	11	36.3%	benign(0.124)	tolerated(0.54)	neutral(0.018)	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains
GTF2H3	2967	genome.wustl.edu	37	12	124132581	124132581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001516.3	+1	provisional	p.F91C	0.915	107	0%	68	19.1%	2	50%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Tfb4
NCOR2	9612	genome.wustl.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006312.3	-1	validated	p.Q499	0.999	91	0%	80	18.8%	8	0%	-	-	-	NULL
PUS1	80324	genome.wustl.edu	37	12	132425975	132425975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_025215.5	+1	reviewed	p.T228M	1.000	130	0%	138	23.2%	43	32.5%	benign(0.359)	tolerated(0.11)	neutral(0.386)	superfamily_Pseudouridine synthase
EP400	57634	genome.wustl.edu	37	12	132530313	132530313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015409.3	+1	validated	p.I2355	0.021	258	0%	242	16.9%	41	41.4%	-	-	-	superfamily_Homeodomain_like
FBRSL1	57666	genome.wustl.edu	37	12	133149188	133149188	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001142641.1	+1	validated	p.Q522*	1.000	140	0%	120	15%	8	37.5%	-	-	-	NULL
DCLK1	9201	genome.wustl.edu	37	13	36700199	36700199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004734.3	-1	validated	p.R26W	0.990	49	0%	55	20%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GAS6	2621	genome.wustl.edu	37	13	114523858	114523858	+	Silent	SNP	G	G	A	rs77167214		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000820.2	-1	reviewed	p.P672	0.008	37	0%	31	22.6%	230	29.1%	-	-	-	superfamily_ConA_like_lec_gl
AJUBA	84962	genome.wustl.edu	37	14	23442658	23442658	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032876.4	-1	validated	p.Y537	0.895	230	0%	175	21.1%	34	44.1%	-	-	-	NULL
HECTD1	25831	genome.wustl.edu	37	14	31647287	31647287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015382.2	-1	validated	p.R105H	1.000	218	0%	143	18.9%	23	39.1%	probably_damaging(0.982)	tolerated(0.15)	deleterious(0.667)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31806737	31806737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015473.2	-1	validated	p.E811D	0.997	167	0%	166	18.7%	23	47.8%	possibly_damaging(0.475)	tolerated(0.07)	deleterious(0.476)	superfamily_ARM repeat
SNX6	58533	genome.wustl.edu	37	14	35055467	35055467	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152233.2	-1	reviewed	p.L267V	1.000	150	0%	99	16.2%	7	14.2%	possibly_damaging(0.647)	tolerated(0.08)	deleterious(0.527)	HMMPfam_Vps5
FRMD6	122786	genome.wustl.edu	37	14	52171561	52171561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001042481.1	+1	validated	p.A148T	1.000	104	0%	88	31.8%	4	0%	benign(0.01)	tolerated(0.05)	neutral(0.346)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SYNE2	23224	genome.wustl.edu	37	14	64610507	64610507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_182914.2	+1	reviewed	p.M5108I	1.000	272	0%	228	15.4%	13	61.5%	possibly_damaging(0.737)	tolerated(0.26)	neutral(0.303)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
TGFB3	7043	genome.wustl.edu	37	14	76446961	76446961	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003239.2	-1	reviewed	p.T92	1.000	274	0.4%	230	16.1%	14	50%	-	-	-	HMMPfam_TGFb_propeptide
TGFB3	7043	genome.wustl.edu	37	14	76447041	76447041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003239.2	-1	reviewed	p.P66T	1.000	244	0%	227	17.2%	19	47.3%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_TGFb_propeptide
C14orf118	55668	genome.wustl.edu	37	14	76644271	76644271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_017972.2	+1	validated	p.N363K	0.995	394	0%	318	19.2%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
SNW1	22938	genome.wustl.edu	37	14	78205385	78205385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012245.2	-1	reviewed	p.T117N	1.000	217	0%	185	18.9%	12	25%	benign(0.016)	tolerated(0.35)	neutral(0.021)	NULL
EML5	161436	genome.wustl.edu	37	14	89083213	89083215	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_183387.2	-1	validated	p.G1884in_frame_del	1.000:0.963:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
TC2N	123036	genome.wustl.edu	37	14	92258816	92258816	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001128595.1	-1	validated	p.Q314	0.999	241	0%	172	14.5%	4	25%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
IGHA2	3494	genome.wustl.edu	37	14	106054005	106054005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000390539	-1	known	p.V172M	0.982	136	0%	125	16%	6431	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00407,HMMPfam_ig,superfamily_Immunoglobulin
GOLGA6L1	283767	genome.wustl.edu	37	15	22742712	22742712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001001413.3	+1	provisional	p.R366Q	0.020	55	0%	61	9.8%	0	-	unknown(0)	tolerated(0.72)	-	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50212484	50212484	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024837.2	-1	validated	p.R628*	0.042	269	0%	254	16.5%	2	0%	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
NPTN	27020	genome.wustl.edu	37	15	73866015	73866015	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012428.3	-1	reviewed	p.N276	0.998	200	0%	151	11.3%	244	38.1%	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NEIL1	79661	genome.wustl.edu	37	15	75646108	75646110	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024608.2	+1	validated	p.E251in_frame_del	0.039:0.976:0.986	-	-	-	-	-	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TBL3	10607	genome.wustl.edu	37	16	2025588	2025588	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006453.2	+1	reviewed	p.P288	0.000	45	0%	25	28%	59	47.4%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
PKD1	5310	genome.wustl.edu	37	16	2160558	2160558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001009944.2	-1	reviewed	p.E1537G	0.981	49	0%	41	17.1%	11	18.1%	possibly_damaging(0.948)	tolerated(0.15)	deleterious(0.632)	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain
CLDN9	9080	genome.wustl.edu	37	16	3063869	3063869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020982.3	+1	reviewed	p.A169V	0.993	16	0%	14	28.6%	7	42.8%	benign(0.187)	tolerated(0.08)	neutral(0.318)	HMMPfam_PMP22_Claudin
MYH11	4629	genome.wustl.edu	37	16	15829237	15829237	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001040114.1	-1	reviewed	p.T1171	0.960	279	0%	275	20.7%	14	7.1%	-	-	-	HMMPfam_Myosin_tail_1
ARHGAP17	55114	genome.wustl.edu	37	16	24942461	24942461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001006634.1	-1	validated	p.T720M	0.715	396	0%	333	16.2%	36	47.2%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
FBXL19	54620	genome.wustl.edu	37	16	30953728	30953728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001099784.2	+1	provisional	p.W520R	1.000	81	0%	62	17.7%	24	41.6%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_RNI-like
HSD3B7	80270	genome.wustl.edu	37	16	30997993	30997993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_025193.3	+1	reviewed	p.E167K	0.999	110	0%	83	20.5%	48	16.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
CES3	23491	genome.wustl.edu	37	16	67006830	67006830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024922.4	+1	validated	p.V532L	0.000	131	0%	113	15.9%	26	53.8%	benign(0.137)	tolerated(0.07)	neutral(0.331)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
TMEM170A	124491	genome.wustl.edu	37	16	75481497	75481497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_145254.1	-1	provisional	p.V132I	1.000	290	0.3%	238	18.5%	13	30.7%	benign(0.185)	tolerated(0.41)	neutral(0.032)	HMMPfam_Tmemb_170
ZC3H18	124245	genome.wustl.edu	37	16	88691154	88691154	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_144604.3	+1	validated	e11+1	1.000	93	0%	94	20.2%	0	-	-	-	-	-
MC1R	4157	genome.wustl.edu	37	16	89986165	89986165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002386.3	+1	reviewed	p.A167T	0.051	52	0%	45	22.2%	25	28%	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001114974.1	+1	validated	e3+1	0.999	42	0%	45	28.9%	0	-	-	-	-	-
MINK1	50488	genome.wustl.edu	37	17	4787717	4787717	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_153827.4	+1	reviewed	p.G122	0.998	313	0%	285	18.6%	57	19.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MINK1	50488	genome.wustl.edu	37	17	4787721	4787721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_153827.4	+1	reviewed	p.A124T	1.000	299	0%	272	21.7%	56	33.9%	benign(0.01)	tolerated(0.65)	neutral(0.004)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CD68	968	genome.wustl.edu	37	17	7484803	7484803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001251.2	+1	reviewed	p.R347C	1.000	194	0%	168	20.2%	238	5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lamp,PatternScan_LAMP_2
DNAH2	146754	genome.wustl.edu	37	17	7736495	7736495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020877.2	+1	validated	p.T4362M	1.000	90	0%	66	21.2%	11	27.2%	possibly_damaging(0.92)	deleterious(0.02)	deleterious(0.754)	HMMPfam_Dynein_heavy
PIK3R5	23533	genome.wustl.edu	37	17	8791757	8791757	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001142633.1	-1	validated	p.T449	0.000	42	0%	42	23.8%	0	-	-	-	-	HMMPfam_PI3K_1B_p101
MAPK7	5598	genome.wustl.edu	37	17	19284628	19284628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002749.3	+1	reviewed	p.R369H	0.992	59	1.7%	40	22.5%	19	52.6%	unknown(0)	deleterious(0.03)	-	superfamily_Protein kinase-like (PK-like)
USP22	23326	genome.wustl.edu	37	17	20914467	20914467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015276.1	-1	validated	p.R367P	1.000	53	0%	53	11.3%	102	36.2%	possibly_damaging(0.905)	deleterious(0.04)	deleterious(0.708)	HMMPfam_UCH,superfamily_Cysteine proteinases
TNS4	84951	genome.wustl.edu	37	17	38652335	38652335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032865.5	-1	validated	p.T115A	0.993	104	0%	70	27.1%	2	50%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
TUBG1	7283	genome.wustl.edu	37	17	40761797	40761800	+	Frame_Shift_Del	DEL	CAAT	CAAT	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CAAT	CAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001070.4	+1	reviewed	p.N15fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
EFTUD2	9343	genome.wustl.edu	37	17	42928705	42928705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_004247.3	-1	validated	p.F952L	1.000	206	0%	168	14.3%	128	34.3%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_EFG_III_V
ENSG00000204323	0	genome.wustl.edu	37	17	73636987	73636987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000375215	+1	known	p.R5Q	0.001	87	0%	77	14.3%	23	34.7%	-	-	-	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76063981	76063981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001142640.1	+1	validated	p.A916T	0.942	172	0%	170	16.5%	2	0%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76972132	76972132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005567.3	-1	reviewed	p.W53C	1.000	36	0%	35	17.1%	1263	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
MAPRE2	10982	genome.wustl.edu	37	18	32621535	32621535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014268.2	+1	reviewed	p.N11I	1.000	133	0%	107	20.6%	17	0%	unknown(0)	-	-	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45567238	45567238	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039360.1	-1	validated	p.Q81*	1.000	208	0%	186	20.4%	36	63.8%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
MYO5B	4645	genome.wustl.edu	37	18	47390601	47390601	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001080467.2	-1	reviewed	p.H1251	0.357	92	0%	65	15.4%	49	46.9%	-	-	-	NULL
C19orf71	100128569	genome.wustl.edu	37	19	3543390	3543390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001135580.1	+1	validated	p.R81W	0.000	25	0%	23	26.1%	8	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
PIP5K1C	23396	genome.wustl.edu	37	19	3656513	3656513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012398.1	-1	reviewed	p.G171C	0.996	126	0.8%	104	18.3%	49	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104
STXBP2	6813	genome.wustl.edu	37	19	7711171	7711171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006949.2	+1	reviewed	p.R465C	1.000	59	0%	53	20.8%	102	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
CD209	30835	genome.wustl.edu	37	19	7809955	7809955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_021155.3	-1	reviewed	p.W258R	0.121	192	0%	197	20.3%	1	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00034,superfamily_C-type lectin-like
FBN3	84467	genome.wustl.edu	37	19	8201191	8201191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_032447.3	-1	reviewed	p.V450I	0.449	57	0%	36	16.7%	4	50%	possibly_damaging(0.568)	tolerated(0.5)	neutral(0.205)	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
DOCK6	57572	genome.wustl.edu	37	19	11313383	11313383	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020812.2	-1	validated	p.R1746	0.254	94	0%	65	16.9%	17	17.6%	-	-	-	NULL
MAN2B1	4125	genome.wustl.edu	37	19	12776187	12776187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000528.3	-1	reviewed	p.V139M	0.997	194	0%	155	16.8%	157	22.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
NOTCH3	4854	genome.wustl.edu	37	19	15300167	15300167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000435.2	-1	reviewed	p.P370L	1.000	113	0.9%	96	11.5%	157	25.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
RASAL3	64926	genome.wustl.edu	37	19	15574876	15574876	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_022904.1	-1	validated	p.P98	0.466	32	0%	27	22.2%	0	-	-	-	-	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18378139	18378139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001145304.1	-1	validated	p.E71K	0.000	157	0.6%	167	22.8%	0	-	possibly_damaging(0.875)	tolerated(0.27)	neutral(0.374)	NULL
COMP	1311	genome.wustl.edu	37	19	18896858	18896858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_000095.2	-1	reviewed	p.D469G	1.000	52	0%	37	27%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_3,superfamily_SSF103647
UQCRFS1	7386	genome.wustl.edu	37	19	29698566	29698566	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006003.2	-1	validated	p.C238	1.000	159	0%	133	21.1%	195	46.1%	-	-	-	HMMPfam_Rieske,superfamily_Rieske_dom
MLL4	9757	genome.wustl.edu	37	19	36212024	36212025	+	Frame_Shift_Ins	INS	-	-	CCCAGTT	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014727.1	+1	reviewed	p.P596fs	0.978:0.982	-	-	-	-	-	-	-	-	-	NULL
THAP8	199745	genome.wustl.edu	37	19	36526365	36526365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152658.2	-1	provisional	p.D268N	0.918	178	0%	201	23.4%	9	44.4%	benign(0.355)	tolerated(0.32)	neutral(0.137)	NULL
LGALS4	3960	genome.wustl.edu	37	19	39297124	39297124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006149.3	-1	reviewed	p.G151R	0.993	70	0%	64	21.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Concanavalin A-like lectins/glucanases
MRPS12	6183	genome.wustl.edu	37	19	39423117	39423117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_021107.1	+1	reviewed	p.T65M	1.000	47	0%	48	10.4%	71	12.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribosomal_S12,superfamily_Nucleic acid-binding proteins
CIC	23152	genome.wustl.edu	37	19	42791372	42791373	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_015125.3	+1	validated	p.S146fs	0.633:0.999	-	-	-	-	-	-	-	-	-	NULL
ZNF233	353355	genome.wustl.edu	37	19	44777697	44777697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_181756.1	+1	provisional	p.I295T	0.000	121	0%	75	22.7%	1	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44892260	44892260	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_152354.3	-1	validated	p.D49	0.000	73	0%	50	14%	0	-	-	-	-	HMMSmart_SM00349
NAPA	8775	genome.wustl.edu	37	19	47995335	47995335	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003827.2	-1	reviewed	p.S201	0.991	315	0%	296	16.2%	357	35.8%	-	-	-	superfamily_TPR-like
KCNJ14	3770	genome.wustl.edu	37	19	48965234	48965234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_013348.2	+1	reviewed	p.R85C	1.000	27	0%	36	33.3%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_SSF81324
PPFIA3	8541	genome.wustl.edu	37	19	49637371	49637371	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003660.2	+1	reviewed	p.N442	0.985	39	0%	16	31.2%	0	-	-	-	-	NULL
HRC	3270	genome.wustl.edu	37	19	49657349	49657351	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002152.2	-1	reviewed	p.E382in_frame_del	0.138:0.163:0.167	-	-	-	-	-	-	-	-	-	NULL
TRPM4	54795	genome.wustl.edu	37	19	49674986	49674986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_017636.2	+1	provisional	p.R337H	0.998	55	0%	37	13.5%	24	54.1%	benign(0.136)	tolerated(0.51)	neutral(0.020)	NULL
TSKS	60385	genome.wustl.edu	37	19	50250005	50250005	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_021733.1	-1	reviewed	p.R238	0.997	62	0%	34	17.6%	0	-	-	-	-	NULL
ATF5	22809	genome.wustl.edu	37	19	50436268	50436268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_012068.4	+1	validated	p.S256	0.362	73	0%	60	15%	94	23.4%	-	-	-	HMMSmart_BRLZ,HMMPfam_bZIP_1
SHANK1	50944	genome.wustl.edu	37	19	51191209	51191209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016148.2	-1	validated	p.P760L	1.000	156	0%	142	16.2%	3	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMSmart_SM00228
SIGLEC9	27180	genome.wustl.edu	37	19	51629341	51629341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_014441.1	+1	provisional	p.P235L	0.003	133	0%	112	15.2%	19	0%	benign(0.382)	tolerated(0.07)	neutral(0.441)	superfamily_SSF48726
ZNF665	79788	genome.wustl.edu	37	19	53668142	53668142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_024733.3	-1	provisional	p.T534I	0.074	222	0%	206	15.5%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HSPBP1	23640	genome.wustl.edu	37	19	55789013	55789013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001130106.1	-1	validated	p.A138T	0.407	87	0%	52	15.4%	143	46.8%	benign(0.014)	tolerated(0.18)	neutral(0.057)	superfamily_ARM repeat
EPN1	29924	genome.wustl.edu	37	19	56206692	56206692	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001130071.1	+1	validated	p.P653	0.010	17	0%	11	36.4%	80	23.7%	-	-	-	NULL
SLC52A3	113278	genome.wustl.edu	37	20	744281	744281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_033409.3	-1	validated	p.A312T	0.034	133	0%	106	17%	55	60%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_DUF1011
PTPRA	5786	genome.wustl.edu	37	20	2969091	2969091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002836.3	+1	reviewed	p.D237N	1.000	250	0%	253	15%	29	51.7%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	superfamily_SSF52799
ATRN	8455	genome.wustl.edu	37	20	3543020	3543020	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_139321.2	+1	reviewed	p.Y515	0.973	383	0%	353	15.3%	67	32.8%	-	-	-	superfamily_Galactose oxidase central domain
RALGAPB	57148	genome.wustl.edu	37	20	37121654	37121654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020336.2	+1	validated	p.Y90D	1.000	237	0%	131	17.6%	8	25%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TOX2	84969	genome.wustl.edu	37	20	42574671	42574671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001098798.1	+1	validated	p.P40L	0.274	82	0%	71	14.1%	0	-	benign(0)	tolerated(1)	-	NULL
TFAP2C	7022	genome.wustl.edu	37	20	55212957	55212957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003222.3	+1	reviewed	p.N414T	1.000	79	0%	79	19%	21	61.9%	benign(0.104)	tolerated(0.2)	neutral(0.057)	HMMPfam_TF_AP-2
SLCO4A1	28231	genome.wustl.edu	37	20	61299478	61299481	+	Frame_Shift_Del	DEL	TTCG	TTCG	-	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	TTCG	TTCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_016354.3	+1	validated	p.F585fs	1.000:1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
TIAM1	7074	genome.wustl.edu	37	21	32493072	32493072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_003253.2	-1	validated	p.A1464T	0.236	62	0%	38	31.6%	3	0%	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
ITSN1	6453	genome.wustl.edu	37	21	35199157	35199157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000437442	+1	known	p.K71E	1.000	166	0%	119	24.4%	2	0%	unknown(0)	-	-	NULL
COL6A2	1292	genome.wustl.edu	37	21	47545962	47545962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001849.3	+1	reviewed	p.R745W	0.980	63	0%	53	17%	1502	13.5%	probably_damaging(0.997)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TUBA8	51807	genome.wustl.edu	37	22	18604277	18604277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_018943.1	+1	provisional	p.A12V	1.000	90	0%	83	20.5%	0	-	probably_damaging(0.993)	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
ARVCF	421	genome.wustl.edu	37	22	19967388	19967388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001670.1	-1	reviewed	p.R425H	1.000	20	0%	22	36.4%	46	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
RGL4	266747	genome.wustl.edu	37	22	24038709	24038709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000452208	+1	known	p.P13	0.000	36	0%	33	36.4%	0	-	possibly_damaging(0.732)	-	-	NULL
TFIP11	24144	genome.wustl.edu	37	22	26895242	26895242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001008697.1	-1	validated	p.R386Q	0.999	81	0%	90	18.9%	62	37%	benign(0.075)	tolerated(0.47)	neutral(0.016)	NULL
OSBP2	23762	genome.wustl.edu	37	22	31266547	31266547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_030758.3	+1	reviewed	p.A329T	0.998	119	0%	89	15.7%	19	52.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
LIMK2	3985	genome.wustl.edu	37	22	31658603	31658603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001031801.1	+1	reviewed	p.T206M	1.000	100	0%	114	18.4%	61	47.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PICK1	9463	genome.wustl.edu	37	22	38470897	38470897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039583.1	+1	reviewed	p.R336C	1.000	103	0%	82	17.1%	161	52.1%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Arfaptin
MCHR1	2847	genome.wustl.edu	37	22	41077444	41077444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005297.3	+1	reviewed	p.V261M	0.973	110	0%	71	14.1%	0	-	benign(0.382)	tolerated(0.15)	neutral(0.363)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRPS2	5634	genome.wustl.edu	37	X	12817518	12817518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039091.2	+1	reviewed	p.E105D	0.000	127	0%	106	17.9%	1	100%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_SSF53271
KLHL15	80311	genome.wustl.edu	37	X	24024180	24024180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_030624.2	-1	reviewed	p.R211C	1.000	180	0%	168	23.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
RBM10	8241	genome.wustl.edu	37	X	47039367	47039367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005676.3	+1	reviewed	p.N330	0.990	47	0%	41	17.1%	86	68.6%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TRO	7216	genome.wustl.edu	37	X	54956905	54956905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001039705.1	+1	reviewed	p.G1250S	0.000	179	0%	172	16.9%	3	0%	benign(0.142)	tolerated(0.27)	neutral(0.045)	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73749177	73749177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_006517.3	+1	reviewed	p.I508V	1.000	364	0%	356	17.4%	0	-	benign(0.006)	tolerated(0.23)	neutral(0.042)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
GPRASP1	9737	genome.wustl.edu	37	X	101909252	101909252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001099410.1	+1	reviewed	p.E137D	0.133	86	1.2%	78	17.9%	0	-	possibly_damaging(0.476)	deleterious(0.04)	deleterious(0.506)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114468485	114468485	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_020871.3	-1	validated	p.G40	0.998	45	0%	44	38.6%	0	-	-	-	-	NULL
C1GALT1C1	29071	genome.wustl.edu	37	X	119760820	119760820	+	Nonsense_Mutation	SNP	G	G	A	rs137853598		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001011551.2	-1	reviewed	p.R68*	0.996	215	0%	189	18%	10	0%	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122866868	122866868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001081550.1	-1	validated	p.A2V	1.000	224	0%	207	18.4%	1	0%	benign(0.058)	deleterious(0.03)	neutral(0.368)	NULL
SASH3	54440	genome.wustl.edu	37	X	128926543	128926543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	ENST00000443760	+1	known	p.G228C	0.006	172	0%	172	20.3%	2	0%	unknown(0)	deleterious(0)	-	NULL
FMR1	2332	genome.wustl.edu	37	X	147030285	147030285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_002024.5	+1	reviewed	p.T607M	1.000	223	0.9%	165	16.4%	43	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153218220	153218220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_005334.2	-1	reviewed	p.G1563S	1.000	49	0%	45	17.8%	48	68.7%	benign(0)	tolerated(1)	-	NULL
GAB3	139716	genome.wustl.edu	37	X	153906509	153906509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17B-01A-22D-A12J-09	TCGA-D1-A17B-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cff83f73-f4a2-4e00-9de0-e5d4aa245ce5	08956a2b-fcee-44dc-9930-58dfb1151800	NM_001081573.1	-1	reviewed	p.Q570H	0.987	325	0%	264	23.9%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
