Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CCNL2	81669	genome.wustl.edu	37	1	1323236	1323236	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_030937.4	-1	validated	p.R378*	0.865	55	0%	62	38.7%	48	37.5%	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
CASZ1	54897	genome.wustl.edu	37	1	10699667	10699667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001079843.1	-1	validated	p.G1538S	1.000	19	0%	30	50%	93	52.6%	possibly_damaging(0.729)	tolerated(0.6)	neutral(0.270)	NULL
ARHGEF10L	55160	genome.wustl.edu	37	1	17928658	17928658	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018125.3	+1	validated	p.D98	0.000	36	0%	29	31%	13	0%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27099098	27099098	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006015.4	+1	reviewed	p.Q1172*	1.000	256	0%	202	14.9%	44	6.8%	-	-	-	NULL
CTPS	1503	genome.wustl.edu	37	1	41454317	41454317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001905.2	+1	validated	p.R164C	1.000	191	0%	169	24.3%	15	6.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_synth_N,superfamily_SSF52540
KANK4	163782	genome.wustl.edu	37	1	62740564	62740564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_181712.4	-1	validated	p.R71Q	1.000	214	0%	188	43.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92185595	92185595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_003243.3	-1	validated	p.R423Q	0.000	194	0%	165	18.2%	3	0%	benign(0.427)	tolerated(0.4)	neutral(0.155)	NULL
OTUD7B	56957	genome.wustl.edu	37	1	149943131	149943131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_020205.2	-1	validated	p.R45H	1.000	231	0%	285	15.8%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151076095	151076095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_144618.2	+1	validated	p.T227I	0.981	206	0%	312	15.1%	3	33.3%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	NULL
SPTA1	6708	genome.wustl.edu	37	1	158619725	158619725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_003126.2	-1	reviewed	p.R1164C	0.998	86	0%	96	10.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158644383	158644383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_003126.2	-1	reviewed	p.P399S	1.000	235	0%	243	12.3%	0	-	possibly_damaging(0.598)	deleterious(0.04)	deleterious(0.556)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
REN	5972	genome.wustl.edu	37	1	204125913	204125913	+	Missense_Mutation	SNP	G	G	A	rs140771210		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000537.3	-1	reviewed	p.S237L	0.017	92	0%	121	34.7%	5	0%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_Asp,superfamily_Acid proteases
MTR	4548	genome.wustl.edu	37	1	237016364	237016364	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000254.2	+1	reviewed	p.T643	0.078	245	0%	245	12.7%	3	0%	-	-	-	superfamily_Dihydropteroate synthetase-like
ATAD2B	54454	genome.wustl.edu	37	2	24033259	24033259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017552.1	-1	validated	p.F794C	1.000	186	0%	235	23%	2	50%	benign(0.206)	deleterious(0)	neutral(0.465)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF513	130557	genome.wustl.edu	37	2	27601362	27601362	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_144631.4	-1	validated	p.Q257	1.000	41	0%	41	12.2%	101	13.8%	-	-	-	NULL
BMP10	27302	genome.wustl.edu	37	2	69093688	69093688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_014482.1	-1	reviewed	p.P117L	0.766	140	0%	124	58.1%	0	-	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_TGFb_propeptide
SMYD5	10322	genome.wustl.edu	37	2	73450186	73450186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006062.2	+1	validated	p.R243Q	1.000	521	0%	635	17.2%	29	10.3%	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	HMMSmart_SET,superfamily_SSF82199
LONRF2	164832	genome.wustl.edu	37	2	100900813	100900813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_198461.3	-1	validated	p.R738C	0.999	45	0%	44	34.1%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EPHA4	2043	genome.wustl.edu	37	2	222347411	222347411	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004438.3	-1	reviewed	e5-1	1.000	177	0%	176	15.9%	0	-	-	-	-	-
ECEL1	9427	genome.wustl.edu	37	2	233350770	233350771	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004826.2	-1	validated	p.R199fs	0.458:0.998	-	-	-	-	-	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNH8	131096	genome.wustl.edu	37	3	19479727	19479727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_144633.2	+1	reviewed	p.I417F	0.981	172	0%	116	18.1%	0	-	benign(0.133)	tolerated(0.12)	neutral(0.272)	HMMPfam_Ion_trans,superfamily_SSF81324
NEK10	152110	genome.wustl.edu	37	3	27233605	27233605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000396636	-1	known	p.R807Q	1.000	446	0%	348	17.5%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Protein kinase-like (PK-like)
OSBPL10	114884	genome.wustl.edu	37	3	31871585	31871585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017784.4	-1	reviewed	p.A226S	1.000	125	0%	109	17.4%	15	26.6%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001098209.1	+1	reviewed	p.S37F	1.000	132	0%	114	37.7%	224	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MON1A	84315	genome.wustl.edu	37	3	49948186	49948186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032355.3	-1	validated	p.G346S	0.995	59	0%	51	21.6%	31	3.2%	possibly_damaging(0.772)	tolerated(0.4)	neutral(0.303)	HMMPfam_Mon1
FLNB	2317	genome.wustl.edu	37	3	58095043	58095043	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001457.3	+1	reviewed	p.P731	0.929	103	0%	82	20.7%	54	25.9%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
ATXN7	6314	genome.wustl.edu	37	3	63976488	63976488	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001128149.2	+1	reviewed	p.C545	1.000	279	0%	211	21.3%	14	50%	-	-	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77614263	77614263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002942.3	+1	reviewed	p.R614H	1.000	145	0%	114	45.6%	22	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Fibronectin type III
TMCC1	23023	genome.wustl.edu	37	3	129546846	129546846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001017395.3	-1	validated	p.G126C	1.000	149	0%	126	14.3%	19	10.5%	possibly_damaging(0.76)	deleterious(0.01)	deleterious(0.687)	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130463462	130463462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_014602.2	-1	validated	p.R201C	1.000	400	0%	252	24.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
SLCO2A1	6578	genome.wustl.edu	37	3	133664057	133664057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005630.2	-1	validated	p.C448Y	1.000	110	0%	80	41.2%	207	35.2%	unknown(0)	deleterious(0)	-	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895
PIK3CB	5291	genome.wustl.edu	37	3	138417865	138417865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006219.1	-1	provisional	p.E552K	1.000	145	0%	142	38%	5	60%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
SIAH2	6478	genome.wustl.edu	37	3	150480349	150480349	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005067.5	-1	reviewed	p.A96	1.000	33	0%	25	16%	65	0%	-	-	-	HMMSmart_RING,superfamily_SSF57850
IFT80	57560	genome.wustl.edu	37	3	160073849	160073849	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000472555	-1	known	p.Y34C	1.000	281	0%	199	38.7%	7	42.8%	-	-	-	superfamily_WD40 repeat-like,HMMPfam_WD40
PRKCI	5584	genome.wustl.edu	37	3	170015154	170015154	+	Silent	SNP	G	G	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002740.5	+1	reviewed	p.P520	0.995	257	0%	217	36.4%	13	46.1%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF721	170960	genome.wustl.edu	37	4	435961	435961	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_133474.2	-1	validated	p.S765	0.000	138	0%	112	16.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR19	57728	genome.wustl.edu	37	4	39276469	39276469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_025132.3	+1	reviewed	p.R1203G	0.983	190	0%	160	14.4%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNPDA2	132789	genome.wustl.edu	37	4	44713095	44713095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_138335.1	-1	provisional	p.T157A	1.000	321	0%	224	23.2%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
KDR	3791	genome.wustl.edu	37	4	55964921	55964921	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002253.2	-1	reviewed	p.A772	0.001	172	0%	135	13.3%	15	0%	-	-	-	NULL
SRP72	6731	genome.wustl.edu	37	4	57344578	57344578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006947.3	+1	validated	p.A226T	1.000	153	0%	104	13.5%	34	26.4%	probably_damaging(0.96)	tolerated(0.28)	neutral(0.434)	HMMPfam_TPR_1,superfamily_SSF48452
TMPRSS11B	132724	genome.wustl.edu	37	4	69093739	69093739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_182502.3	-1	validated	p.L381F	0.987	345	0%	249	45%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
LEF1	51176	genome.wustl.edu	37	4	109084746	109084747	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_016269.4	-1	reviewed	p.L131fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CTNNB1_binding
LRAT	9227	genome.wustl.edu	37	4	155665764	155665764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004744.3	+1	reviewed	p.R96C	0.998	121	0%	82	17.1%	5	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLC6A3	6531	genome.wustl.edu	37	5	1441507	1441507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001044.4	-1	reviewed	p.A129T	0.996	54	0%	66	25.8%	0	-	possibly_damaging(0.599)	deleterious(0.01)	deleterious(0.613)	HMMPfam_SNF
PRDM9	56979	genome.wustl.edu	37	5	23526955	23526955	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_020227.2	+1	provisional	p.G586	0.990	156	0%	110	32.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
AGXT2	64902	genome.wustl.edu	37	5	35025868	35025868	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_031900.3	-1	reviewed	p.E321	1.000	172	0%	154	12.3%	0	-	-	-	-	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major
PIK3R1	5295	genome.wustl.edu	37	5	67593368	67593368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_181523.1	+1	reviewed	p.Q705R	1.000	268	0%	206	19.4%	201	35.3%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_SH2 domain
PJA2	9867	genome.wustl.edu	37	5	108714460	108714460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_014819.4	-1	validated	p.A243V	0.000	289	0%	249	41%	7	28.5%	benign(0.012)	deleterious(0)	neutral(0.445)	NULL
PCDHA3	56145	genome.wustl.edu	37	5	140182713	140182713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018906.2	+1	reviewed	p.R644H	0.006	60	0%	45	13.3%	0	-	benign(0.303)	deleterious(0.03)	neutral(0.459)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208057	140208057	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018909.2	+1	reviewed	p.N127	0.991	177	0%	147	12.2%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
CYFIP2	26999	genome.wustl.edu	37	5	156810346	156810346	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001037332.2	+1	validated	p.I1062	0.923	54	0%	54	50%	19	15.7%	-	-	-	HMMPfam_FragX_IP
SLC17A1	6568	genome.wustl.edu	37	6	25813442	25813442	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005074.3	-1	validated	e6-1	0.538	275	0%	186	14.5%	0	-	-	-	-	-
HLA-DQB2	3120	genome.wustl.edu	37	6	32726795	32726795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000435145	-1	known	p.R160W	0.997	39	2.6%	33	48.5%	29	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
UHRF1BP1	54887	genome.wustl.edu	37	6	34835099	34835099	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017754.3	+1	validated	p.G1170	0.844	272	0%	214	13.6%	5	0%	-	-	-	NULL
ENPP5	59084	genome.wustl.edu	37	6	46135541	46135541	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_021572.4	-1	validated	p.H153	0.069	129	0%	99	16.2%	7	14.2%	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TUBE1	51175	genome.wustl.edu	37	6	112402338	112402338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_016262.4	-1	reviewed	p.T95A	1.000	418	0%	350	12.9%	3	33.3%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
EPB41L2	2037	genome.wustl.edu	37	6	131229975	131229976	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001431.3	-1	validated	p.K280fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
ARID1B	57492	genome.wustl.edu	37	6	157517355	157517355	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017519.2	+1	validated	p.Q1289*	1.000	190	0%	116	12.9%	44	2.2%	-	-	-	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158483049	158483049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_003898.3	+1	reviewed	p.A327V	0.000	128	0%	138	39.1%	6	50%	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	HMMPfam_Syja_N
PSMB1	5689	genome.wustl.edu	37	6	170855244	170855244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002793.3	-1	reviewed	p.G84S	1.000	365	0%	241	17%	209	22%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_SSF56235
USP42	84132	genome.wustl.edu	37	7	6189655	6189655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032172.2	+1	validated	p.E610K	1.000	101	1%	120	12.5%	9	11.1%	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423945	88423945	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_152706.2	-1	predicted	p.S104	0.000	181	0%	177	40.1%	0	-	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731564	92731564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017654.2	-1	validated	p.N1283D	0.185	118	0%	113	13.3%	0	-	possibly_damaging(0.892)	-	-	NULL
TECPR1	25851	genome.wustl.edu	37	7	97870558	97870558	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015395.1	-1	provisional	e5-2	1.000	18	0%	35	20%	1	100%	-	-	-	-
PLXNA4	91584	genome.wustl.edu	37	7	131913187	131913187	+	Missense_Mutation	SNP	C	C	T	rs190791576	by1000genomes	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_020911.1	-1	validated	p.R549H	1.000	145	0%	173	12.1%	12	8.3%	benign(0.013)	tolerated(0.6)	neutral(0.005)	HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat
LOC728377	728377	genome.wustl.edu	37	7	143983521	143983521	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	XR_078379.1	-1	model	NULL	0.003	159	0%	166	5.4%	4	0%	-	-	-	-
DPYSL2	1808	genome.wustl.edu	37	8	26484796	26484796	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001386.4	+1	validated	p.G202	0.607	198	0%	241	17.4%	38	2.6%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
LEPROTL1	23484	genome.wustl.edu	37	8	29963298	29963298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015344.2	+1	validated	p.N106D	1.000	379	0.5%	430	27.7%	63	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Vps55
TGS1	96764	genome.wustl.edu	37	8	56699343	56699343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_024831.6	+1	validated	p.P296S	0.001	191	0%	201	16.9%	9	22.2%	benign(0.001)	tolerated(0.7)	neutral(0.002)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113332134	113332134	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_198123.1	-1	validated	p.E2414D	1.000	398	0%	300	29%	0	-	probably_damaging(0.973)	tolerated(0.44)	neutral(0.427)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
FAM91A1	157769	genome.wustl.edu	37	8	124780959	124780959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_144963.2	+1	validated	p.E6V	1.000	14	0.000	8	0.625	5	20%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
UBAP1	51271	genome.wustl.edu	37	9	34241903	34241903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_016525.4	+1	reviewed	p.R294C	1.000	110	0%	96	13.5%	127	14.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90312007	90312007	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004938.2	+1	reviewed	p.T833	0.000	627	0%	477	39.4%	11	54.5%	-	-	-	superfamily_SSF52540
USP20	10868	genome.wustl.edu	37	9	132630665	132630667	+	In_Frame_Del	DEL	GAC	GAC	-	rs67308408	byCluster;by1000genomes	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001008563.3	+1	validated	p.D359in_frame_del	0.330:0.308:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
RAPGEF1	2889	genome.wustl.edu	37	9	134501636	134501636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_198679.1	-1	reviewed	p.G460R	0.951	45	0%	47	23.4%	39	17.9%	benign(0.282)	tolerated(0.2)	neutral(0.136)	NULL
PMPCA	23203	genome.wustl.edu	37	9	139307269	139307269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015160.1	+1	provisional	p.A121V	0.973	602	0%	513	11.7%	28	10.7%	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16
ZMYND19	116225	genome.wustl.edu	37	9	140477059	140477059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_138462.2	-1	validated	p.A207V	1.000	43	0%	45	11.1%	68	14.7%	benign(0.005)	tolerated(0.39)	neutral(0.016)	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1
ASAH2	56624	genome.wustl.edu	37	10	51994202	51994202	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_019893.2	-1	validated	p.P266	0.002	503	0%	324	18.8%	0	-	-	-	-	HMMPfam_Ceramidase_alk
MYPN	84665	genome.wustl.edu	37	10	69934247	69934247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032578.2	+1	validated	p.S800P	0.302	320	0%	310	41.3%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
H2AFY2	55506	genome.wustl.edu	37	10	71868960	71868960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018649.2	+1	validated	p.G317D	1.000	71	0%	65	36.9%	150	40%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Macro,superfamily_SSF52949
POLR3A	11128	genome.wustl.edu	37	10	79741954	79741954	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_007055.3	-1	validated	p.H1239	0.885	132	0%	159	40.9%	38	47.3%	-	-	-	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
PTEN	5728	genome.wustl.edu	37	10	89690802	89690802	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000371953	+1	known	e4-1	1.000	263	0%	208	38.5%	0	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89692779	89692788	+	Frame_Shift_Del	DEL	ATCCTTTTGA	ATCCTTTTGA	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	ATCCTTTTGA	ATCCTTTTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000371953	+1	known	p.Y88fs	1.000:1.000:1.000:1.000:0.979:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
STK32C	282974	genome.wustl.edu	37	10	134038000	134038000	+	Missense_Mutation	SNP	C	C	T	rs185020377	by1000genomes	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_173575.2	-1	reviewed	p.A302T	0.989	59	0%	59	13.6%	7	0%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IRF7	3665	genome.wustl.edu	37	11	612704	612704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004031.2	-1	reviewed	p.A498T	0.759	41	0%	46	10.9%	27	11.1%	benign(0)	tolerated(0.97)	-	NULL
NAV2	89797	genome.wustl.edu	37	11	19955323	19955323	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_182964.5	+1	validated	p.T511	0.005	257	0%	215	39.1%	3	33.3%	-	-	-	NULL
ENSG00000205035	0	genome.wustl.edu	37	11	49830108	49830108	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000357667	+1	known	p.L345	0.073	68	0%	53	24.5%	0	-	-	-	-	NULL
OR9Q1	219956	genome.wustl.edu	37	11	57947185	57947185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001005212.3	+1	validated	p.A90E	0.001	174	0%	141	34.8%	0	-	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	HMMPfam_7tm_1,superfamily_SSF81321
TUT1	64852	genome.wustl.edu	37	11	62343263	62343263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_022830.2	-1	reviewed	p.R643Q	0.698	261	0%	221	13.6%	16	0%	probably_damaging(0.994)	tolerated(0.37)	deleterious(0.471)	NULL
BAD	572	genome.wustl.edu	37	11	64039165	64039165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004322.3	-1	reviewed	p.A100T	0.998	24	0%	30	16.7%	86	23.2%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMPfam_Bcl-2_BAD
RAB1B	81876	genome.wustl.edu	37	11	66043316	66043343	+	Frame_Shift_Del	DEL	CCGCTATGCCAGCGAGAACGTCAATAAG	CCGCTATGCCAGCGAGAACGTCAATAAG	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	CCGCTATGCCAGCGAGAACGTCAATAAG	CCGCTATGCCAGCGAGAACGTCAATAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_030981.2	+1	validated	p.R108fs	1.000:1.000:1.000:1.000:1.000:1.000:0.988:1.000:1.000:1.000:1.000:1.000:0.719:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTN3	89	genome.wustl.edu	37	11	66323650	66323650	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001104.1	+1	reviewed	p.A251	1.000	115	0%	123	22%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ADRBK1	156	genome.wustl.edu	37	11	67051372	67051372	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001619.3	+1	reviewed	p.D481	0.374	66	0%	61	21.3%	149	24.8%	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
FAT3	120114	genome.wustl.edu	37	11	92085533	92085533	+	Silent	SNP	C	C	T	rs193044124	by1000genomes	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001008781.2	+1	validated	p.S85	0.350	210	0%	127	16.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92085831	92085831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001008781.2	+1	validated	p.A185T	1.000	131	0%	88	20.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCUN1D5	84259	genome.wustl.edu	37	11	102937066	102937066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032299.3	-1	validated	p.K163E	1.000	206	0%	117	17.1%	24	20.8%	possibly_damaging(0.897)	tolerated(0.06)	deleterious(0.676)	HMMPfam_DUF298
CACNA1C	775	genome.wustl.edu	37	12	2690914	2690914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_199460.2	+1	reviewed	p.R685Q	1.000	321	0%	264	16.3%	3	0%	possibly_damaging(0.928)	tolerated(0.18)	neutral(0.431)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NRIP2	83714	genome.wustl.edu	37	12	2940019	2940019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_031474.2	-1	validated	p.R117H	0.991	125	0%	104	20.2%	3	0%	benign(0.001)	tolerated(1)	-	NULL
MCRS1	10445	genome.wustl.edu	37	12	49959912	49959912	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001012300.1	-1	validated	p.R46*	1.000	50	0%	39	10.3%	27	0%	-	-	-	NULL
MMP19	4327	genome.wustl.edu	37	12	56233467	56233467	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000340290	-1	known	p.R78*	0.954	68	0%	64	28.1%	8	0%	-	-	-	NULL
XPOT	11260	genome.wustl.edu	37	12	64818394	64818394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_007235.3	+1	reviewed	p.M400V	1.000	248	0%	202	25.7%	21	23.8%	benign(0.428)	tolerated(0.42)	neutral(0.153)	superfamily_ARM-type_fold
MIR492	574449	genome.wustl.edu	37	12	95228211	95228211	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000385303	+1	known	NULL	0.960	144	0%	129	15.5%	0	-	-	-	-	-
IFT81	28981	genome.wustl.edu	37	12	110643254	110643254	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001143779.1	+1	validated	p.R551*	0.997	142	0%	103	37.9%	1	0%	-	-	-	NULL
RBM19	9904	genome.wustl.edu	37	12	114377918	114377918	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_016196.3	-1	reviewed	p.P595	0.589	42	0%	44	18.2%	17	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
COQ5	84274	genome.wustl.edu	37	12	120966825	120966825	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032314.3	-1	validated	p.A40	0.001	163	0%	137	27.7%	8	37.5%	-	-	-	NULL
DHX37	57647	genome.wustl.edu	37	12	125470809	125470809	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032656.2	-1	reviewed	p.K37*	0.071	242	0%	208	39.9%	0	-	-	-	-	NULL
KL	9365	genome.wustl.edu	37	13	33635227	33635227	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004795.3	+1	reviewed	p.R671*	0.000	45	0%	30	43.3%	3	33.3%	-	-	-	superfamily_(Trans)glycosidases
KIAA0564	23078	genome.wustl.edu	37	13	42249349	42249349	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015058.1	-1	validated	e36+2	1.000	517	0%	388	16.8%	0	-	-	-	-	-
MYCBP2	23077	genome.wustl.edu	37	13	77725034	77725036	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015057.4	-1	validated	p.Q2284in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_E set domains
RPGRIP1	57096	genome.wustl.edu	37	14	21811209	21811209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_020366.3	+1	reviewed	p.M1118I	1.000	191	0%	137	14.6%	0	-	benign(0)	tolerated(1)	-	NULL
WDHD1	11169	genome.wustl.edu	37	14	55454062	55454062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_007086.2	-1	reviewed	p.E524K	1.000	100	0%	67	40.3%	11	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40_like
DACT1	51339	genome.wustl.edu	37	14	59112424	59112424	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_016651.5	+1	validated	p.S361	0.990	91	0%	77	14.3%	3	0%	-	-	-	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93299562	93299562	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005113.2	+1	reviewed	p.L605	1.000	127	0%	129	19.4%	12	8.3%	-	-	-	HMMPfam_Golgin_A5
MIR541	100126308	genome.wustl.edu	37	14	101530892	101530892	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000401360	+1	known	NULL	1.000	72	1.4%	92	34.8%	0	-	-	-	-	-
IGHV3-16	28447	genome.wustl.edu	37	14	106622180	106622180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000390604	-1	known	p.Q22R	0.879	310	0%	224	14.7%	0	-	benign(0.109)	deleterious(0.01)	neutral(0.414)	HMMPfam_V-set,superfamily_SSF48726
OCA2	4948	genome.wustl.edu	37	15	28273033	28273033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000275.2	-1	reviewed	p.R167C	0.001	59	0%	46	13%	1	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
DUOX2	50506	genome.wustl.edu	37	15	45398780	45398780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_014080.4	-1	reviewed	p.Q631K	0.995	453	0%	343	35.6%	0	-	benign(0.004)	tolerated(0.98)	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48786421	48786421	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000138.4	-1	reviewed	p.I903N	1.000	536	0%	377	25.2%	12	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
SLC24A1	9187	genome.wustl.edu	37	15	65945013	65945013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004727.2	+1	validated	p.M973V	0.999	198	0%	179	11.2%	6	33.3%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_Na_Ca_ex
CYP1A2	1544	genome.wustl.edu	37	15	75047325	75047325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000761.3	+1	reviewed	p.V483M	0.004	67	0%	69	39.1%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_p450,superfamily_Cytochrome_P450
COMMD4	54939	genome.wustl.edu	37	15	75630424	75630424	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017828.3	+1	validated	p.L9	1.000	146	0%	135	14.8%	66	21.2%	-	-	-	NULL
SIN3A	25942	genome.wustl.edu	37	15	75673043	75673043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001145357.1	-1	reviewed	p.R1104*	1.000	194	0.5%	176	14.8%	50	2%	-	-	-	NULL
SNX33	257364	genome.wustl.edu	37	15	75942562	75942562	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_153271.1	+1	provisional	p.D373	0.533	58	0%	56	17.9%	48	25%	-	-	-	HMMPfam_BAR_3_WASP_bdg
PSTPIP1	9051	genome.wustl.edu	37	15	77310863	77310863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_003978.3	+1	reviewed	p.T68M	0.974	96	0%	86	11.6%	3	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like
HMG20A	10363	genome.wustl.edu	37	15	77764133	77764133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018200.2	+1	provisional	p.R198W	0.913	194	0%	166	19.9%	9	0%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
FAH	2184	genome.wustl.edu	37	15	80469907	80469907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000137.1	+1	reviewed	p.I314M	0.998	262	0%	224	13.8%	44	18.1%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_FAA_hydrolase,superfamily_FAH
HOMER2	9455	genome.wustl.edu	37	15	83523542	83523542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_199330.1	-1	reviewed	p.V180M	1.000	34	0%	33	12.1%	240	4.5%	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	NULL
ABCA3	21	genome.wustl.edu	37	16	2354134	2354134	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001089.2	-1	reviewed	p.R435*	0.020	57	0%	59	18.6%	2	0%	-	-	-	NULL
MGRN1	23295	genome.wustl.edu	37	16	4702774	4702774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015246.2	+1	validated	p.A131V	1.000	39	0%	26	23.1%	94	20.2%	benign(0.187)	tolerated(0.22)	neutral(0.060)	NULL
GLYR1	84656	genome.wustl.edu	37	16	4862180	4862180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032569.3	-1	validated	p.G397R	1.000	78	0%	73	37%	52	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains
ALDOA	226	genome.wustl.edu	37	16	30081306	30081306	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000034.2	+1	reviewed	p.E319*	1.000	34	0%	23	47.8%	1327	36.3%	-	-	-	HMMPfam_Glycolytic,superfamily_SSF51569
KIAA0664	23277	genome.wustl.edu	37	17	2604746	2604746	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015229.3	-1	validated	p.H233	0.970	55	0%	37	27%	29	20.6%	-	-	-	superfamily_SSF103107
SHPK	23729	genome.wustl.edu	37	17	3526786	3526786	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_013276.2	-1	reviewed	e4-1	1.000	109	0%	93	11.8%	0	-	-	-	-	-
ZMYND15	84225	genome.wustl.edu	37	17	4645078	4645078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001136046.1	+1	provisional	p.R265Q	0.984	91	0%	103	23.3%	1	0%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
EIF5A	1984	genome.wustl.edu	37	17	7214946	7214946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001143760.1	+1	validated	p.A181V	1.000	211	0%	158	13.9%	1223	13.4%	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_Nucleic_acid_OB
POLR2A	5430	genome.wustl.edu	37	17	7405387	7405387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000937.3	+1	validated	p.A840T	1.000	49	0%	45	15.6%	58	22.4%	possibly_damaging(0.951)	deleterious(0.04)	deleterious(0.743)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
MYH1	4619	genome.wustl.edu	37	17	10408782	10408782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005963.3	-1	reviewed	p.D741N	1.000	259	0%	204	45.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
PEMT	10400	genome.wustl.edu	37	17	17409545	17409545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_148172.1	-1	reviewed	p.E217K	0.983	19	0%	29	37.9%	85	41.1%	possibly_damaging(0.516)	deleterious(0)	deleterious(0.618)	HMMPfam_PEMT
UTP6	55813	genome.wustl.edu	37	17	30207653	30207653	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_018428.2	-1	validated	p.V302	0.018	192	0%	198	14.1%	62	16.1%	-	-	-	superfamily_SSF48452
PIGW	284098	genome.wustl.edu	37	17	34893963	34893963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_178517.3	+1	validated	p.K338R	0.822	232	0%	168	38.1%	3	66.6%	benign(0.414)	tolerated(0.45)	neutral(0.146)	HMMPfam_GWT1
LHX1	3975	genome.wustl.edu	37	17	35299578	35299578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005568.2	+1	reviewed	p.R253C	1.000	22	0%	14	57.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
B4GALNT2	124872	genome.wustl.edu	37	17	47241524	47241524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_153446.2	+1	validated	p.R341W	0.002	165	0%	123	40.7%	0	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
C17orf28	283987	genome.wustl.edu	37	17	72948091	72948091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_030630.2	-1	validated	p.V738M	1.000	19	0%	28	21.4%	443	21.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hid1
AZI1	22994	genome.wustl.edu	37	17	79173251	79173251	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_014984.2	-1	validated	p.R374	0.000	50	0%	55	18.2%	29	13.7%	-	-	-	NULL
ACTG1	71	genome.wustl.edu	37	17	79478513	79478513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001614.2	-1	reviewed	p.G168A	1.000	58	0%	54	40.7%	8025	45.2%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
LOC729602	729602	genome.wustl.edu	37	18	11625930	11625930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	XM_002344140.1	-1	model	p.T43M	0.001	813	0%	610	36.9%	0	-	benign(0.14)	tolerated(0.25)	neutral(0.049)	HMMPfam_NPIP
DSC3	1825	genome.wustl.edu	37	18	28576839	28576839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001941.3	-1	reviewed	p.C804Y	1.000	288	0%	203	10.8%	8	0%	benign(0.004)	tolerated(1)	-	NULL
ONECUT2	9480	genome.wustl.edu	37	18	55103486	55103486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004852.2	+1	reviewed	p.H180Y	1.000	130	0%	115	17.4%	0	-	possibly_damaging(0.84)	tolerated(0.13)	deleterious(0.574)	NULL
LRRC8E	80131	genome.wustl.edu	37	19	7963741	7963741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_025061.3	+1	validated	p.H112Y	1.000	174	0.6%	151	16.6%	17	17.6%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	NULL
ADAMTS10	81794	genome.wustl.edu	37	19	8656914	8656914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_030957.2	-1	reviewed	p.T554I	0.998	10	0%	10	60%	4	0%	benign(0.054)	deleterious(0)	neutral(0.448)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
RDH8	50700	genome.wustl.edu	37	19	10131449	10131449	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015725.2	+1	validated	p.L169	0.998	154	0%	167	44.3%	0	-	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd
RAD23A	5886	genome.wustl.edu	37	19	13060223	13060223	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_005053.2	+1	reviewed	e7+1	1.000	27	0%	30	26.7%	2	0%	-	-	-	-
CEP89	84902	genome.wustl.edu	37	19	33450819	33450819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_032816.3	-1	validated	p.Q98*	0.165	120	0%	121	39.7%	5	0%	-	-	-	NULL
ZNF568	374900	genome.wustl.edu	37	19	37440885	37440885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_198539.2	+1	validated	p.P277L	0.977	127	0.8%	99	27.3%	0	-	possibly_damaging(0.929)	tolerated(0.15)	deleterious(0.617)	superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38384371	38384371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_031951.3	-1	provisional	p.R619W	1.000	78	0%	74	16.2%	0	-	probably_damaging(1)	-	-	superfamily_WD40 repeat-like
RYR1	6261	genome.wustl.edu	37	19	39018402	39018402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000540.2	+1	reviewed	p.A3601V	0.972	37	0%	62	14.5%	0	-	possibly_damaging(0.948)	-	-	NULL
CYP2A7	1549	genome.wustl.edu	37	19	41386395	41386395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000764.2	-1	reviewed	p.R161Q	0.000	32	0%	32	25%	0	-	benign(0.033)	tolerated(0.11)	neutral(0.273)	HMMPfam_p450,superfamily_Cytochrome_P450
GRIK5	2901	genome.wustl.edu	37	19	42557849	42557849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002088.3	-1	reviewed	p.Y392H	1.000	80	0%	88	13.6%	1	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_Periplasmic binding protein-like I
MEGF8	1954	genome.wustl.edu	37	19	42855481	42855481	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_001410.2	+1	validated	p.C883	0.997	29	0%	33	21.2%	18	27.7%	-	-	-	HMMPfam_PSI,HMMSmart_PSI
POLD1	5424	genome.wustl.edu	37	19	50905097	50905097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002691.2	+1	validated	p.A127T	0.983	29	0%	49	22.4%	25	4%	benign(0.066)	deleterious(0)	neutral(0.449)	superfamily_RNaseH_fold
NLRP9	338321	genome.wustl.edu	37	19	56249718	56249718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_176820.2	-1	reviewed	p.D8G	0.018	168	0%	139	35.3%	0	-	benign(0.017)	tolerated(0.38)	neutral(0.018)	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
FOXA2	3170	genome.wustl.edu	37	20	22562865	22562865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_021784.4	-1	reviewed	p.P339S	1.000	33	0%	10	50%	8	50%	benign(0.116)	tolerated(0.63)	neutral(0.012)	NULL
MYH7B	57644	genome.wustl.edu	37	20	33577713	33577713	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_020884.3	+1	reviewed	p.Y628	0.614	73	0%	76	13.2%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM83D	81610	genome.wustl.edu	37	20	37580405	37580405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_030919.2	+1	validated	p.L364M	1.000	137	0%	95	14.7%	16	18.7%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
PLCG1	5335	genome.wustl.edu	37	20	39795437	39795437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002660.2	+1	reviewed	p.Y747H	1.000	138	0%	91	12.1%	106	12.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
ZNF217	7764	genome.wustl.edu	37	20	52192959	52192959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006526.2	-1	validated	p.A782T	0.002	106	0%	86	11.6%	19	21%	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
CLIC6	54102	genome.wustl.edu	37	21	36079682	36079682	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_053277.1	+1	reviewed	p.L493	1.000	329	0%	233	37.8%	0	-	-	-	-	superfamily_Thioredoxin-like
LOC729057	729057	genome.wustl.edu	37	22	16123401	16123401	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	XR_042044.2	+1	model	NULL	0.973	104	0%	93	17.2%	0	-	-	-	-	-
IGLV7-46	28775	genome.wustl.edu	37	22	22724318	22724318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000390295	+1	known	p.T72A	0.000	131	0%	133	13.5%	1	0%	possibly_damaging(0.695)	tolerated(0.5)	neutral(0.259)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-16	28799	genome.wustl.edu	37	22	23089942	23089943	+	Frame_Shift_Del	DEL	CT	CT	-	rs5844518	byCluster;by1000genomes	TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	ENST00000390311	+1	known	p.C14fs	0.818:0.656	-	-	-	-	-	-	-	-	-	NULL
NCF4	4689	genome.wustl.edu	37	22	37273767	37273767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_000631.4	+1	validated	p.R308W	0.085	64	0%	57	42.1%	12	0%	possibly_damaging(0.869)	deleterious(0)	deleterious(0.782)	HMMPfam_PB1,HMMSmart_SM00666,superfamily_CAD  PB1 domains
SGSM3	27352	genome.wustl.edu	37	22	40800319	40800319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_015705.4	+1	validated	p.R76W	1.000	20	0%	25	24%	81	30.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Ypt/Rab-GAP domain of gyp1p
VCX	26609	genome.wustl.edu	37	X	7811709	7811709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_013452.2	+1	reviewed	p.P91	0.241	290	0%	163	23.9%	0	-	-	-	-	NULL
FIGF	2277	genome.wustl.edu	37	X	15364359	15364359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004469.2	-1	reviewed	p.H321Y	1.000	344	0%	256	44.9%	0	-	benign(0.082)	tolerated(0.53)	neutral(0.013)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53231131	53231131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_004187.3	-1	reviewed	p.G591R	1.000	224	0%	210	19.5%	162	24.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC
OPHN1	4983	genome.wustl.edu	37	X	67339173	67339173	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_002547.2	-1	reviewed	p.D426	1.000	163	0%	116	26.7%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
SLC16A2	6567	genome.wustl.edu	37	X	73740833	73740833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_006517.3	+1	reviewed	p.G221R	1.000	264	0%	200	39%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ZCCHC5	203430	genome.wustl.edu	37	X	77913701	77913701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_152694.2	-1	reviewed	p.A73T	0.003	123	0%	88	47.7%	0	-	benign(0.024)	tolerated(0.36)	neutral(0.021)	NULL
NXF2	56001	genome.wustl.edu	37	X	101572034	101572034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17R-01A-11D-A12J-09	TCGA-D1-A17R-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b60b6447-168e-4066-93ce-9a69d187c5dd	ed8bd540-b591-4d54-b1ba-1ee37a8727d3	NM_017809.3	+1	reviewed	p.R53H	0.000	771	0%	647	18.5%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
