Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
OR4F5	79501	genome.wustl.edu	37	1	69345	69345	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005484.1	+1	provisional	p.I85	0.754	993	0%	1165	12.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NOC2L	26155	genome.wustl.edu	37	1	881002	881002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015658.3	-1	validated	p.R650Q	0.998	47	0%	43	25.6%	149	46.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TTLL10	254173	genome.wustl.edu	37	1	1117749	1117749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130045.1	+1	validated	p.R280I	1.000	35	0%	35	22.9%	0	-	benign(0.347)	deleterious(0.04)	neutral(0.459)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
ACTRT2	140625	genome.wustl.edu	37	1	2939348	2939348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080431.4	+1	reviewed	p.E366D	1.000	35	0%	37	32.4%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CHD5	26038	genome.wustl.edu	37	1	6196633	6196633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015557.1	-1	provisional	p.Q880H	1.000	42	0%	50	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
RPL22	6146	genome.wustl.edu	37	1	6246853	6246853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000983.3	-1	reviewed	p.K89T	1.000	115	0%	94	28.7%	590	58.1%	benign(0.052)	deleterious(0)	neutral(0.448)	HMMPfam_Ribosomal_L22e
ACOT7	11332	genome.wustl.edu	37	1	6399560	6399560	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181864.2	-1	reviewed	p.E127	1.000	28	0%	26	38.5%	61	49.1%	-	-	-	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
CAMTA1	23261	genome.wustl.edu	37	1	7723533	7723533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015215.1	+1	validated	p.S309L	1.000	31	0%	30	53.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PIK3CD	5293	genome.wustl.edu	37	1	9783210	9783210	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005026.3	+1	validated	p.T818	0.036	52	0%	39	17.9%	4	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
PIK3CD	5293	genome.wustl.edu	37	1	9783347	9783347	+	Missense_Mutation	SNP	C	C	T	rs148984508	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005026.3	+1	validated	p.P864L	1.000	44	0%	33	27.3%	1	0%	benign(0.036)	deleterious(0.04)	neutral(0.351)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
UBE4B	10277	genome.wustl.edu	37	1	10166437	10166437	+	Missense_Mutation	SNP	G	G	A	rs180983516	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105562.1	+1	reviewed	p.R331H	1.000	158	0%	176	33%	0	-	unknown(0)	deleterious(0.04)	-	NULL
PGD	5226	genome.wustl.edu	37	1	10471501	10471501	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002631.2	+1	reviewed	p.F182	0.970	20	0%	27	40.7%	232	37%	-	-	-	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
PGD	5226	genome.wustl.edu	37	1	10479704	10479704	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002631.2	+1	reviewed	p.F450	1.000	127	0%	165	31.5%	408	38.2%	-	-	-	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
APITD1	378708	genome.wustl.edu	37	1	10500415	10500415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198544.2	+1	reviewed	p.R74I	1.000	71	0%	60	25%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Histone-fold
MASP2	10747	genome.wustl.edu	37	1	11103047	11103047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006610.2	-1	reviewed	p.F258L	0.846	36	0%	22	40.9%	0	-	benign(0.369)	tolerated(0.55)	neutral(0.124)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MTOR	2475	genome.wustl.edu	37	1	11206828	11206828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004958.3	-1	reviewed	p.E1531*	1.000	101	0%	98	27.6%	2	0%	-	-	-	HMMPfam_FAT,superfamily_ARM-type_fold,superfamily_SSF48452
MTHFR	4524	genome.wustl.edu	37	1	11863019	11863019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005957.4	-1	reviewed	p.R52Q	1.000	30	0%	33	30.3%	0	-	possibly_damaging(0.934)	tolerated(0.22)	neutral(0.422)	HMMPfam_MTHFR,superfamily_FAD-linked oxidoreductase
NPPB	4879	genome.wustl.edu	37	1	11918376	11918376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002521.2	-1	reviewed	p.L95I	0.000	44	0%	38	31.6%	0	-	possibly_damaging(0.763)	deleterious(0.02)	deleterious(0.666)	HMMPfam_ANP
KIAA2013	90231	genome.wustl.edu	37	1	11983163	11983163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138346.1	-1	provisional	p.D473N	1.000	28	0%	36	16.7%	387	43.4%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_DUF2152
TNFRSF8	943	genome.wustl.edu	37	1	12186103	12186103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001243.3	+1	reviewed	p.R417W	0.008	56	0%	73	37%	0	-	benign(0.015)	deleterious(0.01)	neutral(0.406)	NULL
TNFRSF8	943	genome.wustl.edu	37	1	12198313	12198313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001243.3	+1	reviewed	p.E455*	0.001	17	0%	20	25%	0	-	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12320763	12320763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015378.2	+1	reviewed	p.R375Q	1.000	108	0%	65	21.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12321133	12321133	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015378.2	+1	reviewed	p.Q447	0.026	120	0%	113	9.7%	0	-	-	-	-	NULL
C1orf158	93190	genome.wustl.edu	37	1	12815659	12815659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152290.2	+1	validated	p.D41Y	0.020	168	0%	214	22.4%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
LOC440563	440563	genome.wustl.edu	37	1	13183412	13183412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136561.2	-1	validated	p.R154Q	0.988	600	0%	711	20.3%	0	-	-	-	-	NULL
LOC440563	440563	genome.wustl.edu	37	1	13183683	13183683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136561.2	-1	validated	p.R64W	1.000	133	0%	155	18.1%	1	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PDPN	10630	genome.wustl.edu	37	1	13940871	13940871	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006474.4	+1	reviewed	p.I225	0.022	148	0%	139	20.1%	15	0%	-	-	-	HMMPfam_Podoplanin
PRDM2	7799	genome.wustl.edu	37	1	14109209	14109209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012231.4	+1	reviewed	p.K1640T	0.957	106	0%	98	30.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KAZ	23254	genome.wustl.edu	37	1	15392182	15392182	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201628.2	+1	validated	p.F385	1.000	79	0%	89	29.2%	4	75%	-	-	-	NULL
CELA2B	51032	genome.wustl.edu	37	1	15813931	15813931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015849.2	+1	reviewed	p.S264L	0.001	67	0%	77	31.2%	0	-	benign(0.025)	tolerated(0.12)	neutral(0.262)	superfamily_Pept_Ser_Cys
DNAJC16	23341	genome.wustl.edu	37	1	15873286	15873286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015291.2	+1	provisional	p.F262V	0.992	202	0%	269	30.5%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	superfamily_Thioredoxin-like
SPEN	23013	genome.wustl.edu	37	1	16256661	16256661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015001.2	+1	reviewed	p.F1309C	1.000	310	0%	308	23.4%	0	-	possibly_damaging(0.917)	tolerated(0.14)	deleterious(0.617)	NULL
NBPF1	55672	genome.wustl.edu	37	1	16913693	16913693	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017940.3	-1	predicted	p.T210	0.000	718	0%	574	27%	0	-	-	-	-	HMMPfam_DUF1220
RCC2	55920	genome.wustl.edu	37	1	17755626	17755626	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136204.1	-1	validated	p.R119*	1.000	76	0%	63	25.4%	10	0%	-	-	-	superfamily_RCC1/BLIP-II
ARHGEF10L	55160	genome.wustl.edu	37	1	18021692	18021692	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018125.3	+1	validated	p.Q1075L	1.000	10	0%	18	44.4%	73	46.5%	probably_damaging(0.983)	deleterious(0.05)	deleterious(0.774)	superfamily_WD40 repeat-like
PAX7	5081	genome.wustl.edu	37	1	18962743	18962743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002584.2	+1	reviewed	p.S155L	1.000	36	0%	59	25.4%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
UBR4	23352	genome.wustl.edu	37	1	19419871	19419871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020765.2	-1	validated	p.L4683I	1.000	105	0%	145	23.4%	6	33.3%	benign(0.019)	tolerated(1)	neutral(0.001)	superfamily_ARM repeat
KIAA0090	23065	genome.wustl.edu	37	1	19549244	19549244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015047.1	-1	predicted	p.A821T	0.998	70	0%	72	23.6%	36	55.5%	benign(0.062)	tolerated(0.35)	neutral(0.025)	HMMPfam_DUF1620
HTR6	3362	genome.wustl.edu	37	1	19992561	19992561	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000871.1	+1	provisional	p.F105	1.000	29	0%	55	34.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
UBXN10	127733	genome.wustl.edu	37	1	20517580	20517580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152376.3	+1	provisional	p.V176I	0.000	191	0%	189	34.4%	7	57.1%	benign(0.002)	tolerated(0.77)	neutral(0.001)	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21296047	21296047	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003760.3	-1	validated	p.E156*	1.000	163	0%	98	21.4%	1	0%	-	-	-	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21306902	21306902	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003760.3	-1	validated	p.Q84*	1.000	50	0%	45	37.8%	0	-	-	-	-	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22839448	22839448	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083621.1	+1	validated	p.F831	0.992	130	0.8%	114	37.7%	4	75%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EPHA8	2046	genome.wustl.edu	37	1	22902940	22902940	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020526.3	+1	reviewed	p.D130	1.000	20	0%	36	16.7%	0	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
EPHB2	2048	genome.wustl.edu	37	1	23232505	23232505	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004442.6	+1	reviewed	p.I598	0.298	82	0%	63	23.8%	4	100%	-	-	-	superfamily_Kinase_like
LUZP1	7798	genome.wustl.edu	37	1	23417871	23417871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142546.1	-1	reviewed	p.E962*	0.998	207	0%	204	28.4%	1	0%	-	-	-	NULL
LUZP1	7798	genome.wustl.edu	37	1	23418154	23418154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142546.1	-1	reviewed	p.K867N	0.011	289	0%	285	27.4%	2	0%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	NULL
LUZP1	7798	genome.wustl.edu	37	1	23420673	23420673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142546.1	-1	reviewed	p.D28Y	1.000	210	0%	167	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CortBP2
TCEB3	6924	genome.wustl.edu	37	1	24078295	24078295	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003198.2	+1	reviewed	p.F426	0.797	309	0%	373	13.7%	5	20%	-	-	-	NULL
PITHD1	57095	genome.wustl.edu	37	1	24112859	24112859	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020362.4	+1	validated	p.F160	1.000	51	0%	53	20.8%	4	25%	-	-	-	HMMPfam_DUF1000
HMGCL	3155	genome.wustl.edu	37	1	24140706	24140706	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000191.2	-1	reviewed	p.A157	0.000	186	0%	333	27.9%	29	34.4%	-	-	-	HMMPfam_HMGL-like,superfamily_Aldolase
FUCA1	2517	genome.wustl.edu	37	1	24191981	24191981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000147.4	-1	reviewed	p.R175M	1.000	70	0%	88	25%	25	48%	possibly_damaging(0.658)	tolerated(0.07)	deleterious(0.551)	HMMPfam_Alpha_L_fucos,superfamily_Glyco_hydro_cat
CLIC4	25932	genome.wustl.edu	37	1	25153567	25153567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013943.2	+1	reviewed	p.F125L	1.000	254	0%	294	25.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glutathione S-transferase (GST) C-terminal domain
C1orf63	57035	genome.wustl.edu	37	1	25571769	25571769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020317.3	-1	validated	p.A182T	1.000	103	0%	99	22.2%	19	21%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
PDIK1L	149420	genome.wustl.edu	37	1	26440917	26440917	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152835.3	+1	validated	p.R40*	1.000	31	0%	19	21.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CEP85	64793	genome.wustl.edu	37	1	26586194	26586194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022778.2	+1	provisional	p.K414N	1.000	230	0%	272	36.4%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691674	26691674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114759.1	-1	validated	p.K121N	0.030	10	0%	21	38.1%	9	0%	possibly_damaging(0.602)	tolerated(0.2)	neutral(0.258)	NULL
DHDDS	79947	genome.wustl.edu	37	1	26786593	26786593	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000416052	+1	known	p.R118*	1.000	125	0%	154	25.3%	9	11.1%	-	-	-	HMMPfam_Prenyltransf,superfamily_Undecaprenyl diphosphate synthase
ARID1A	8289	genome.wustl.edu	37	1	27087440	27087440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006015.4	+1	reviewed	p.E672*	1.000	299	0%	319	19.4%	6	0%	-	-	-	NULL
SLC9A1	6548	genome.wustl.edu	37	1	27436163	27436163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003047.3	-1	validated	p.L307I	1.000	16	0%	14	35.7%	17	35.2%	benign(0.026)	tolerated(0.26)	neutral(0.035)	HMMPfam_Na_H_Exchanger
WDTC1	23038	genome.wustl.edu	37	1	27630278	27630278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015023.3	+1	validated	p.F544L	1.000	103	0%	171	26.9%	47	36.1%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STX12	23673	genome.wustl.edu	37	1	28144395	28144395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177424.2	+1	validated	p.D204Y	1.000	52	0%	81	22.2%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
PHACTR4	65979	genome.wustl.edu	37	1	28733920	28733920	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001048183.1	+1	reviewed	e1-1	1.000	199	0%	177	27.7%	0	-	-	-	-	-
PHACTR4	65979	genome.wustl.edu	37	1	28800501	28800501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023923.3	+1	reviewed	p.R430Q	1.000	206	0%	262	30.2%	2	100%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
ZCCHC17	51538	genome.wustl.edu	37	1	31810034	31810034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016505.2	+1	provisional	p.R46Q	1.000	206	0%	186	33.9%	23	39.1%	benign(0.304)	tolerated(0.27)	neutral(0.128)	HMMPfam_S1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316
PEF1	553115	genome.wustl.edu	37	1	32098226	32098226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012392.3	-1	reviewed	p.K165N	1.000	58	0%	42	19%	57	8.7%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	HMMSmart_EFh,superfamily_SSF47473
ZBTB8A	653121	genome.wustl.edu	37	1	33065776	33065776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040441.1	+1	validated	p.R361H	1.000	75	0%	74	20.3%	11	72.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34174868	34174868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000373380	-1	known	p.L6I	1.000	45	0%	71	33.8%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
C1orf94	84970	genome.wustl.edu	37	1	34666480	34666480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134734.1	+1	validated	p.A373T	0.919	122	0%	166	24.7%	0	-	benign(0.026)	tolerated(0.06)	neutral(0.324)	NULL
C1orf94	84970	genome.wustl.edu	37	1	34684354	34684354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134734.1	+1	validated	p.N597H	0.124	316	0%	326	27.9%	0	-	possibly_damaging(0.81)	tolerated(0.21)	neutral(0.349)	NULL
C1orf212	113444	genome.wustl.edu	37	1	35321227	35321227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138428.5	-1	validated	p.N19H	0.679	108	0%	121	29.8%	63	50.7%	-	-	-	NULL
SFPQ	6421	genome.wustl.edu	37	1	35656461	35656461	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005066.2	-1	validated	p.E385*	1.000	96	0%	89	22.5%	97	1%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CLSPN	63967	genome.wustl.edu	37	1	36215261	36215261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022111.2	-1	reviewed	p.L727R	0.993	173	0%	157	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EIF2C1	26523	genome.wustl.edu	37	1	36358200	36358200	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012199.2	+1	reviewed	p.I84	1.000	149	0%	152	23%	0	-	-	-	-	superfamily_PAZ domain
EIF2C3	192669	genome.wustl.edu	37	1	36479288	36479288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024852.2	+1	reviewed	p.R403W	1.000	217	0%	83	31.3%	1	0%	possibly_damaging(0.473)	deleterious(0.01)	deleterious(0.561)	NULL
TEKT2	27285	genome.wustl.edu	37	1	36552838	36552838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014466.2	+1	reviewed	p.T261A	0.203	33	0%	31	41.9%	0	-	benign(0.208)	tolerated(0.39)	neutral(0.036)	HMMPfam_Tektin
OSCP1	127700	genome.wustl.edu	37	1	36888414	36888414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145047.4	-1	validated	p.S245Y	1.000	107	0%	124	27.4%	5	20%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
SNIP1	79753	genome.wustl.edu	37	1	38018286	38018286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024700.2	-1	provisional	p.R96K	1.000	556	0%	510	28.4%	2	0%	possibly_damaging(0.465)	tolerated(0.51)	neutral(0.162)	NULL
MACF1	23499	genome.wustl.edu	37	1	39760741	39760741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012090.3	+1	reviewed	p.E731D	1.000	171	0%	125	16%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39801022	39801022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033044.2	+1	reviewed	p.S1361Y	0.002	277	0%	198	29.8%	0	-	benign(0.293)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39896506	39896506	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033044.2	+1	reviewed	p.Q4195*	1.000	66	0%	72	26.4%	6	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39916753	39916753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033044.2	+1	reviewed	p.F5206C	1.000	195	0%	156	23.7%	13	15.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39924810	39924810	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360115	+1	known	p.L126P	0.985	110	0%	107	35.5%	14	7.1%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand
NT5C1A	84618	genome.wustl.edu	37	1	40124831	40124831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032526.1	-1	provisional	p.R357W	0.045	27	0%	21	28.6%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
PPIE	10450	genome.wustl.edu	37	1	40214723	40214723	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006112.2	+1	reviewed	p.F219	0.997	108	0%	144	30.6%	96	42.7%	unknown(0)	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
MFSD2A	84879	genome.wustl.edu	37	1	40431207	40431207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136493.1	+1	validated	p.S194Y	1.000	149	0%	186	29%	27	59.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
CAP1	10487	genome.wustl.edu	37	1	40533227	40533227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105530.1	+1	reviewed	p.E216*	1.000	95	0%	98	17.3%	50	0%	-	-	-	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
RLF	6018	genome.wustl.edu	37	1	40702225	40702225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012421.3	+1	validated	p.K617N	1.000	146	0%	129	31.8%	0	-	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40735679	40735679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005857.3	+1	reviewed	p.K169N	1.000	415	0%	449	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40756571	40756571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005857.3	+1	reviewed	p.R369*	1.000	108	0%	86	25.6%	2	0%	-	-	-	HMMPfam_Peptidase_M48
SMAP2	64744	genome.wustl.edu	37	1	40878691	40878691	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022733.1	+1	provisional	p.E136*	1.000	111	0%	108	27.8%	0	-	-	-	-	NULL
ZNF643	65243	genome.wustl.edu	37	1	40928144	40928144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023070.2	+1	validated	p.S61L	0.386	410	0%	416	31.7%	1	0%	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
ZNF642	339559	genome.wustl.edu	37	1	40960987	40960987	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198494.2	+1	validated	p.I279	0.116	143	0%	121	35.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DEM1	64789	genome.wustl.edu	37	1	40981084	40981084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022774.1	+1	provisional	p.L290V	0.592	177	0%	153	32%	1	100%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_Morph_protein1
ZNF684	127396	genome.wustl.edu	37	1	41012466	41012466	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152373.3	+1	validated	p.N157	0.086	144	0%	156	19.2%	1	100%	-	-	-	superfamily_SSF57667
ZNF684	127396	genome.wustl.edu	37	1	41012788	41012788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152373.3	+1	validated	p.H265N	0.997	133	0%	160	22.5%	0	-	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CTPS	1503	genome.wustl.edu	37	1	41475885	41475885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001905.2	+1	validated	p.E582K	0.961	150	0%	98	25.5%	22	13.6%	possibly_damaging(0.454)	tolerated(0.17)	neutral(0.207)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42045637	42045637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024503.3	-1	validated	p.Y1611C	1.000	180	0%	95	22.1%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42046899	42046899	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024503.3	-1	validated	p.P1190	0.798	69	1.4%	47	23.4%	0	-	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048037	42048037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024503.3	-1	validated	p.S811Y	0.927	130	0%	93	22.6%	0	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42050210	42050210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024503.3	-1	validated	p.E87K	0.246	224	0%	174	20.1%	0	-	benign(0.029)	tolerated(0.44)	neutral(0.014)	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42655024	42655024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014947.3	-1	validated	p.R468Q	1.000	131	0%	96	26%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RIMKLA	284716	genome.wustl.edu	37	1	42880269	42880269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173642.3	+1	validated	p.G267D	1.000	395	0%	298	28.2%	24	45.8%	possibly_damaging(0.827)	tolerated(0.14)	deleterious(0.564)	HMMPfam_RimK,superfamily_SSF56059
PPCS	79717	genome.wustl.edu	37	1	42922918	42922918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024664.2	+1	validated	p.G170D	1.000	214	0%	203	26.1%	79	51.8%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_DFP,superfamily_DNA/pantothenate-metab_flavo_C
CCDC30	728621	genome.wustl.edu	37	1	43032078	43032078	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080850.2	+1	validated	p.R263*	0.978	232	0%	228	33.8%	1	0%	-	-	-	NULL
CCDC30	728621	genome.wustl.edu	37	1	43047141	43047141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080850.2	+1	validated	p.N392K	0.983	190	0%	194	29.4%	0	-	probably_damaging(0.998)	tolerated(0.65)	deleterious(0.477)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43119050	43119050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080850.2	+1	validated	p.T693A	0.996	83	0%	90	26.7%	3	0%	possibly_damaging(0.478)	tolerated(0.36)	neutral(0.178)	NULL
ERMAP	114625	genome.wustl.edu	37	1	43308805	43308805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017922.1	+1	reviewed	p.L444V	0.632	257	0%	258	35.3%	2	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44085815	44085815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002840.3	+1	reviewed	p.E1721K	1.000	84	0%	95	29.5%	79	31.6%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
KDM4A	9682	genome.wustl.edu	37	1	44149410	44149410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014663.2	+1	reviewed	p.R597H	0.995	101	0%	109	19.3%	3	33.3%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
KDM4A	9682	genome.wustl.edu	37	1	44169919	44169919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014663.2	+1	reviewed	p.R1025C	1.000	188	0%	93	18.3%	10	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPH2	1802	genome.wustl.edu	37	1	44436347	44436347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001384.4	+1	reviewed	p.K76T	1.000	122	0%	189	33.3%	23	60.8%	possibly_damaging(0.918)	tolerated(0.12)	deleterious(0.629)	HMMPfam_Diphthamide_syn
RPS8	6202	genome.wustl.edu	37	1	45243294	45243294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012.1	+1	reviewed	p.R74C	0.928	53	0%	68	11.8%	7378	8.1%	possibly_damaging(0.785)	deleterious(0.03)	deleterious(0.658)	HMMPfam_Ribosomal_S8e
NASP	4678	genome.wustl.edu	37	1	46080686	46080686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172164.1	+1	reviewed	p.E558D	0.992	95	0%	67	25.4%	154	40.2%	benign(0.012)	tolerated(0.07)	neutral(0.320)	HMMPfam_SHNi-TPR,HMMSmart_TPR,superfamily_SSF48452
MAST2	23139	genome.wustl.edu	37	1	46497895	46497895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015112.2	+1	validated	p.S1078Y	1.000	166	0%	137	35%	36	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MKNK1	8569	genome.wustl.edu	37	1	47059838	47059838	+	RNA	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_024174.1	-1	validated	NULL	0.016	155	0%	177	27.1%	1	100%	unknown(0)	-	-	-
KIAA0494	9813	genome.wustl.edu	37	1	47181973	47181973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014774.2	-1	validated	p.R110*	0.928	106	0%	73	43.8%	1	0%	-	-	-	NULL
CYP4A11	1579	genome.wustl.edu	37	1	47401293	47401293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000778.3	-1	reviewed	p.Q179H	0.000	188	0%	174	28.7%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4Z1	199974	genome.wustl.edu	37	1	47564779	47564779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178134.2	+1	reviewed	p.K297R	0.544	334	0%	285	28.4%	0	-	benign(0.044)	tolerated(0.22)	neutral(0.045)	HMMPfam_p450,superfamily_Cytochrome_P450
SPATA6	54558	genome.wustl.edu	37	1	48825413	48825413	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019073.1	-1	provisional	p.F313	0.003	159	0%	149	25.5%	0	-	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49052790	49052790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032785.3	-1	validated	p.R385C	1.000	11	0%	11	36.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
AGBL4	84871	genome.wustl.edu	37	1	49056628	49056628	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000416121	-1	known	p.S173F	1.000	18	0%	37	32.4%	0	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
EPS15	2060	genome.wustl.edu	37	1	51829598	51829598	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001981.2	-1	reviewed	p.E767*	0.987	77	0%	82	20.7%	12	0%	-	-	-	NULL
EPS15	2060	genome.wustl.edu	37	1	51871770	51871770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001981.2	-1	reviewed	p.K495T	0.998	110	0%	75	25.3%	1	0%	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	NULL
NRD1	4898	genome.wustl.edu	37	1	52277686	52277686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002525.2	-1	validated	p.L655I	0.997	168	0%	161	28.6%	10	40%	benign(0.406)	tolerated(0.13)	neutral(0.383)	NULL
NRD1	4898	genome.wustl.edu	37	1	52344035	52344035	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002525.2	-1	validated	p.E85*	1.000	30	0%	45	35.6%	3	33.3%	-	-	-	NULL
TXNDC12	51060	genome.wustl.edu	37	1	52492952	52492952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015913.2	-1	provisional	p.L94I	1.000	127	0%	162	22.2%	7	42.8%	benign(0.022)	tolerated(0.23)	neutral(0.043)	superfamily_Thioredoxin-like
ZFYVE9	9372	genome.wustl.edu	37	1	52704348	52704348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004799.2	+1	reviewed	p.E420G	0.993	365	0%	249	30.5%	2	100%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52744180	52744180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004799.2	+1	reviewed	p.E921D	0.999	195	0%	188	27.7%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52911940	52911940	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009881.1	-1	validated	p.E1230*	1.000	448	0%	316	26.3%	0	-	-	-	-	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
SCP2	6342	genome.wustl.edu	37	1	53440482	53440482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002979.3	+1	reviewed	p.H189N	1.000	171	0%	123	22%	2	100%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
MAGOH	4116	genome.wustl.edu	37	1	53694615	53694615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002370.2	-1	reviewed	p.I90	0.353	48	0%	59	25.4%	96	31.2%	-	-	-	HMMPfam_Mago_nashi,superfamily_Mago nashi protein
DMRTB1	63948	genome.wustl.edu	37	1	53930513	53930513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033067.1	+1	provisional	p.E318D	0.005	62	0%	42	31%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DIO1	1733	genome.wustl.edu	37	1	54375643	54375643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039715.1	+1	reviewed	p.R193C	0.990	203	0%	189	30.7%	0	-	benign(0.175)	deleterious(0.05)	neutral(0.361)	HMMPfam_T4_deiodinase
TMEM59	9528	genome.wustl.edu	37	1	54512985	54512985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004872.3	-1	provisional	p.D84N	1.000	186	0%	159	22.6%	144	37.5%	possibly_damaging(0.848)	tolerated(0.65)	neutral(0.329)	NULL
FAM151A	338094	genome.wustl.edu	37	1	55075342	55075342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176782.2	-1	validated	p.S453P	0.000	35	0%	42	23.8%	4	25%	benign(0.011)	tolerated(0.34)	neutral(0.024)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55144524	55144524	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039464.2	+1	validated	p.I682	0.885	69	0%	50	28%	0	-	-	-	-	superfamily_ARM repeat
C8A	731	genome.wustl.edu	37	1	57320598	57320598	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000562.2	+1	reviewed	p.I8	0.102	70	0%	67	28.4%	0	-	-	-	-	NULL
OMA1	115209	genome.wustl.edu	37	1	59004716	59004716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145243.3	-1	provisional	p.S84I	0.005	536	0%	359	23.1%	1	100%	benign(0.422)	deleterious(0)	deleterious(0.582)	NULL
CYP2J2	1573	genome.wustl.edu	37	1	60370622	60370622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000775.2	-1	reviewed	p.R371I	1.000	94	0%	115	31.3%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2J2	1573	genome.wustl.edu	37	1	60375467	60375467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000775.2	-1	reviewed	p.E284*	0.997	118	0%	175	29.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
C1orf87	127795	genome.wustl.edu	37	1	60456397	60456397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152377.1	-1	predicted	p.S530L	0.000	597	0.2%	609	26.8%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62672456	62672456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019079.4	+1	validated	p.M52I	0.046	50	0%	41	36.6%	0	-	unknown(0)	deleterious(0)	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62672573	62672573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019079.4	+1	validated	p.K91N	0.002	89	0%	97	25.8%	0	-	unknown(0)	deleterious(0)	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	62941527	62941527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033407.2	-1	validated	p.L1907I	1.000	339	0%	318	27.7%	24	29.1%	possibly_damaging(0.68)	tolerated(0.89)	neutral(0.242)	HMMPfam_Ded_cyto
DOCK7	85440	genome.wustl.edu	37	1	62995108	62995108	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000454575	-1	known	p.I379V	1.000	249	0%	210	29.5%	3	0%	-	-	-	NULL
ATG4C	84938	genome.wustl.edu	37	1	63282317	63282317	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032852.2	+1	reviewed	p.E78*	1.000	208	0%	151	32.5%	0	-	-	-	-	HMMPfam_Peptidase_C54
EFCAB7	84455	genome.wustl.edu	37	1	64022790	64022790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032437.2	+1	validated	p.T407N	0.773	124	0%	123	22.8%	1	0%	possibly_damaging(0.667)	deleterious(0.01)	deleterious(0.641)	HMMSmart_SM00054,superfamily_EF-hand
JAK1	3716	genome.wustl.edu	37	1	65313267	65313267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002227.2	-1	reviewed	p.K616T	1.000	129	0%	96	31.2%	6	16.6%	benign(0.045)	deleterious(0.01)	neutral(0.408)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DNAJC6	9829	genome.wustl.edu	37	1	65831791	65831791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014787.2	+1	validated	p.R95Q	1.000	713	0.1%	572	35.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_(Phosphotyrosine protein) phosphatases II
DNAJC6	9829	genome.wustl.edu	37	1	65849987	65849987	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014787.2	+1	validated	p.G203*	0.999	137	0%	93	23.7%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
LEPR	3953	genome.wustl.edu	37	1	66091823	66091823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371058	+1	known	p.K897N	0.000	80	0%	83	19.3%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
LEPR	3953	genome.wustl.edu	37	1	66102268	66102268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002303.4	+1	reviewed	p.S1023Y	0.712	264	0%	279	31.9%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66458608	66458608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037340.1	+1	reviewed	p.S7P	1.000	128	0%	97	28.9%	0	-	benign(0.019)	tolerated(0.49)	neutral(0.011)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66458791	66458791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037340.1	+1	reviewed	p.R68W	1.000	169	0%	113	34.5%	0	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66828886	66828886	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037341.1	+1	reviewed	p.I352	1.000	123	0%	93	30.1%	0	-	-	-	-	superfamily_HD-domain/PDEase-like
SGIP1	84251	genome.wustl.edu	37	1	67161059	67161059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000435165	+1	known	p.S10P	1.000	99	0%	76	17.1%	0	-	benign(0)	tolerated(1)	-	NULL
WDR78	79819	genome.wustl.edu	37	1	67356900	67356900	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024763.4	-1	validated	p.E194*	0.992	390	0%	288	26.7%	0	-	-	-	-	NULL
C1orf141	400757	genome.wustl.edu	37	1	67561962	67561962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013674.1	-1	predicted	p.G130D	0.000	34	0%	53	11.3%	0	-	possibly_damaging(0.899)	tolerated(0.74)	neutral(0.357)	NULL
C1orf141	400757	genome.wustl.edu	37	1	67592873	67592873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013674.1	-1	predicted	p.E17D	0.000	288	0%	187	11.8%	0	-	possibly_damaging(0.484)	tolerated(0.11)	neutral(0.432)	NULL
IL23R	149233	genome.wustl.edu	37	1	67705928	67705928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144701.2	+1	reviewed	p.S371Y	0.979	158	0%	150	25.3%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67838206	67838206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001559.2	+1	reviewed	p.S516Y	0.000	369	0%	281	26%	0	-	possibly_damaging(0.76)	deleterious(0.02)	deleterious(0.664)	NULL
SERBP1	26135	genome.wustl.edu	37	1	67890630	67890630	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001018067.1	-1	validated	p.H212	0.553	244	0%	249	34.1%	97	57.7%	-	-	-	HMMPfam_HABP4_PAI-RBP1
GNG12	55970	genome.wustl.edu	37	1	68171255	68171255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018841.4	-1	validated	p.S33L	1.000	121	0%	88	12.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
WLS	79971	genome.wustl.edu	37	1	68564388	68564388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002292.2	-1	validated	p.S520L	0.001	206	0%	135	34.1%	18	33.3%	benign(0.429)	deleterious(0)	deleterious(0.584)	NULL
RPE65	6121	genome.wustl.edu	37	1	68897175	68897175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000329.2	-1	reviewed	p.L408I	1.000	110	0%	106	59.4%	0	-	benign(0.003)	tolerated(0.05)	neutral(0.345)	HMMPfam_RPE65
RPE65	6121	genome.wustl.edu	37	1	68910232	68910232	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000329.2	-1	reviewed	p.T159	0.971	319	0%	254	11%	0	-	-	-	-	HMMPfam_RPE65
LRRC7	57554	genome.wustl.edu	37	1	70257822	70257822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020794.2	+1	validated	p.E96*	1.000	407	0%	267	29.2%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70452064	70452064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020794.2	+1	validated	p.S271Y	0.999	82	0%	43	34.9%	0	-	benign(0.376)	deleterious(0)	deleterious(0.565)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like,superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70504011	70504011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020794.2	+1	validated	p.S797L	0.980	194	0%	198	26.3%	0	-	possibly_damaging(0.614)	deleterious(0)	deleterious(0.657)	NULL
LRRC7	57554	genome.wustl.edu	37	1	70504227	70504227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020794.2	+1	validated	p.S869I	1.000	258	0%	230	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70639162	70639162	+	Missense_Mutation	SNP	C	C	T	rs138941894	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017768.4	-1	validated	p.R366Q	0.998	130	0%	85	29.4%	4	25%	possibly_damaging(0.47)	tolerated(0.23)	neutral(0.197)	NULL
ANKRD13C	81573	genome.wustl.edu	37	1	70771958	70771958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030816.4	-1	validated	p.R242Q	1.000	168	0%	115	26.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ankyrin repeat
LOC100132618	100132618	genome.wustl.edu	37	1	71532727	71532727	+	RNA	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078226.1	+1	model	NULL	0.001	52	0%	71	28.2%	0	-	-	-	-	-
NEGR1	257194	genome.wustl.edu	37	1	72241878	72241878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173808.2	-1	validated	p.S171Y	1.000	49	0%	36	22.2%	0	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRRIQ3	127255	genome.wustl.edu	37	1	74492498	74492498	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105659.1	-1	provisional	p.*625L	0.006	141	0%	114	27.2%	0	-	-	-	-	NULL
LRRIQ3	127255	genome.wustl.edu	37	1	74540475	74540475	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105659.1	-1	provisional	e5-1	0.998	90	0%	73	11%	0	-	-	-	-	-
FPGT	8790	genome.wustl.edu	37	1	74671207	74671207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003838.2	+1	reviewed	p.F492L	1.000	157	0%	174	31%	2	50%	possibly_damaging(0.543)	tolerated(0.65)	neutral(0.187)	HMMPfam_Fucokinase
TNNI3K	51086	genome.wustl.edu	37	1	74901774	74901774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001112808.1	+1	validated	p.L696I	1.000	119	0%	120	25%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C1orf173	127254	genome.wustl.edu	37	1	75038568	75038568	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002912.4	-1	validated	p.V942	0.000	496	0%	404	31.7%	3	0%	-	-	-	NULL
C1orf173	127254	genome.wustl.edu	37	1	75039159	75039159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002912.4	-1	validated	p.F745L	0.000	304	0%	262	30.9%	6	16.6%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75684294	75684294	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152697.4	-1	validated	p.F470	0.995	248	0.4%	199	31.7%	0	-	-	-	-	HMMPfam_DUF580
ACADM	34	genome.wustl.edu	37	1	76215151	76215151	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127328.1	+1	reviewed	p.F256	1.000	289	0%	326	26.1%	3	0%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
ACADM	34	genome.wustl.edu	37	1	76228408	76228408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127328.1	+1	reviewed	p.L413R	1.000	50	0%	49	26.5%	2	0%	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
MSH4	4438	genome.wustl.edu	37	1	76343991	76343991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002440.2	+1	validated	p.D510Y	1.000	120	0%	70	28.6%	0	-	possibly_damaging(0.87)	deleterious(0.03)	deleterious(0.703)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH4	4438	genome.wustl.edu	37	1	76355016	76355016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002440.2	+1	validated	p.E730K	1.000	206	0%	115	20%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76355054	76355054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002440.2	+1	validated	p.E742D	1.000	248	0%	140	17.1%	0	-	possibly_damaging(0.903)	tolerated(0.2)	neutral(0.407)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76356455	76356455	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002440.2	+1	validated	p.T767	0.978	164	0%	84	28.6%	0	-	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2,superfamily_SSF52540
PIGK	10026	genome.wustl.edu	37	1	77632504	77632504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005482.2	-1	reviewed	p.E129D	1.000	139	0%	117	22.2%	7	28.5%	possibly_damaging(0.933)	deleterious(0.05)	deleterious(0.724)	HMMPfam_Peptidase_C13
USP33	23032	genome.wustl.edu	37	1	78195562	78195562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015017.3	-1	validated	p.R265W	1.000	360	0%	441	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP33	23032	genome.wustl.edu	37	1	78207369	78207369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015017.3	-1	validated	p.R36Q	0.997	71	0%	95	32.6%	0	-	possibly_damaging(0.516)	tolerated(0.05)	deleterious(0.519)	NULL
FAM73A	374986	genome.wustl.edu	37	1	78267104	78267104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198549.2	+1	predicted	p.R95I	1.000	133	0%	94	28.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF2217
FAM73A	374986	genome.wustl.edu	37	1	78326966	78326966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198549.2	+1	predicted	p.D445N	1.000	144	0%	129	31%	0	-	possibly_damaging(0.893)	tolerated(0.34)	neutral(0.375)	HMMPfam_DUF2217
GIPC2	54810	genome.wustl.edu	37	1	78560637	78560637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017655.4	+1	validated	p.R143K	1.000	164	0%	179	29.1%	0	-	possibly_damaging(0.601)	tolerated(0.15)	neutral(0.449)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PTGFR	5737	genome.wustl.edu	37	1	79002177	79002177	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000959.3	+1	reviewed	p.W295*	1.000	268	0%	236	31.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
IFI44	10561	genome.wustl.edu	37	1	79125147	79125147	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006417.4	+1	validated	p.R331*	0.216	67	0%	80	26.3%	40	15%	-	-	-	superfamily_SSF52540
ENSG00000249107	0	genome.wustl.edu	37	1	79128796	79128796	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000513923	-1	known	NULL	0.002	37	0%	26	15.4%	1	100%	-	-	-	-
LPHN2	23266	genome.wustl.edu	37	1	82416074	82416074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012302.2	+1	reviewed	p.R467I	1.000	213	0%	157	35.7%	2	0%	benign(0.148)	tolerated(0.12)	neutral(0.274)	HMMPfam_HRM,HMMSmart_SM00008
LPHN2	23266	genome.wustl.edu	37	1	82452695	82452695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370717	+1	known	p.P1218S	1.000	153	0%	130	29.2%	13	46.1%	benign(0.223)	tolerated(0.28)	neutral(0.053)	HMMPfam_Latrophilin
TTLL7	79739	genome.wustl.edu	37	1	84376927	84376927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024686.4	-1	validated	p.E569D	0.085	310	0%	312	25.6%	0	-	benign(0.032)	tolerated(0.51)	neutral(0.010)	NULL
TTLL7	79739	genome.wustl.edu	37	1	84399394	84399394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024686.4	-1	validated	p.R315Q	1.000	375	0%	257	28.8%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
TTLL7	79739	genome.wustl.edu	37	1	84414376	84414376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024686.4	-1	validated	p.R94S	1.000	262	0%	184	27.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_TTL
PRKACB	5567	genome.wustl.edu	37	1	84700971	84700971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182948.2	+1	reviewed	p.E394*	1.000	227	0%	189	22.2%	1	0%	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
DNASE2B	58511	genome.wustl.edu	37	1	84864256	84864256	+	Missense_Mutation	SNP	G	G	T	rs3738573	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021233.2	+1	reviewed	p.Q3H	0.888	209	0%	162	27.8%	0	-	benign(0.258)	tolerated(0.59)	neutral(0.032)	NULL
SSX2IP	117178	genome.wustl.edu	37	1	85135571	85135571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014021.3	-1	reviewed	p.L73F	1.000	151	0%	114	33.3%	1	0%	possibly_damaging(0.775)	deleterious(0.01)	deleterious(0.694)	NULL
WDR63	126820	genome.wustl.edu	37	1	85564246	85564246	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145172.3	+1	validated	p.E462*	0.995	253	0%	220	22.7%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR63	126820	genome.wustl.edu	37	1	85598628	85598628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145172.3	+1	validated	p.N875D	0.000	464	0%	439	29.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85648150	85648150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032184.1	-1	validated	p.F725L	1.000	98	0%	95	25.3%	0	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ODF2L	57489	genome.wustl.edu	37	1	86838114	86838114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020729.2	-1	validated	p.K307T	1.000	26	0%	20	35%	0	-	benign(0.036)	tolerated(0.21)	neutral(0.046)	NULL
ODF2L	57489	genome.wustl.edu	37	1	86848643	86848643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020729.2	-1	validated	p.E160*	1.000	148	0%	147	29.9%	0	-	-	-	-	NULL
CLCA2	9635	genome.wustl.edu	37	1	86919247	86919247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006536.5	+1	reviewed	p.S784Y	0.971	158	0%	138	22.5%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
HS2ST1	9653	genome.wustl.edu	37	1	87570349	87570349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012262.3	+1	reviewed	p.F347L	1.000	141	0%	98	36.7%	1	0%	benign(0.181)	tolerated(0.2)	neutral(0.066)	HMMPfam_HS2ST
GBP1	2633	genome.wustl.edu	37	1	89523708	89523708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002053.2	-1	validated	p.T281P	0.043	238	0%	181	18.2%	26	26.9%	possibly_damaging(0.71)	deleterious(0)	deleterious(0.701)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBP5	115362	genome.wustl.edu	37	1	89727906	89727906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134486.1	-1	validated	p.M548I	0.023	226	0%	178	28.1%	581	50.4%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP6	163351	genome.wustl.edu	37	1	89834262	89834262	+	Missense_Mutation	SNP	A	A	G	rs113354221		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198460.2	+1	validated	p.K51R	1.000	165	0%	260	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC8D	55144	genome.wustl.edu	37	1	90398988	90398988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134479.1	+1	validated	p.A121T	0.912	140	0%	79	25.3%	4	0%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400449	90400449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134479.1	+1	validated	p.D608Y	1.000	187	0%	113	34.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
ZNF644	84146	genome.wustl.edu	37	1	91406768	91406768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201269.1	-1	validated	p.F48C	1.000	214	0.5%	195	23.6%	0	-	benign(0.304)	deleterious(0)	deleterious(0.539)	NULL
HFM1	164045	genome.wustl.edu	37	1	91782010	91782010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017975.3	-1	validated	p.V946I	1.000	184	0%	203	25.1%	0	-	possibly_damaging(0.932)	tolerated(0.28)	neutral(0.410)	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91784640	91784640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017975.3	-1	validated	p.K936R	1.000	140	0%	139	44.6%	0	-	possibly_damaging(0.541)	tolerated(0.51)	neutral(0.193)	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91788537	91788537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000430465	-1	known	p.E107*	0.983	80	0%	89	33.7%	0	-	possibly_damaging(0.862)	tolerated(0.1)	deleterious(0.619)	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91788697	91788697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017975.3	-1	validated	p.K829N	1.000	299	0%	281	18.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sec63
TGFBR3	7049	genome.wustl.edu	37	1	92185461	92185461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003243.3	-1	validated	p.D468Y	1.000	262	0%	193	32.6%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_Zona_pellucida,HMMSmart_ZP
BRDT	676	genome.wustl.edu	37	1	92441951	92441951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001726.3	+1	validated	p.V192L	0.001	166	0%	176	36.4%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
BRDT	676	genome.wustl.edu	37	1	92442825	92442825	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001726.3	+1	validated	p.E282*	1.000	183	0%	163	27%	0	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BRDT	676	genome.wustl.edu	37	1	92445135	92445135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001726.3	+1	validated	p.E370K	1.000	188	0%	157	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00297,superfamily_Bromodomain
BRDT	676	genome.wustl.edu	37	1	92446229	92446229	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001726.3	+1	validated	p.V439	0.999	221	0%	142	24.6%	0	-	-	-	-	NULL
BRDT	676	genome.wustl.edu	37	1	92459751	92459751	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001726.3	+1	validated	p.E743*	0.089	227	0%	192	32.3%	0	-	-	-	-	NULL
EPHX4	253152	genome.wustl.edu	37	1	92518203	92518203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173567.4	+1	validated	p.R282Q	1.000	82	0%	69	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
EPHX4	253152	genome.wustl.edu	37	1	92528711	92528711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173567.4	+1	validated	p.K319N	1.000	180	0%	172	20.9%	0	-	benign(0.025)	tolerated(0.46)	neutral(0.013)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
GLMN	11146	genome.wustl.edu	37	1	92757001	92757001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053274.2	-1	reviewed	p.F87V	0.971	104	0%	110	29.1%	1	0%	benign(0.291)	tolerated(0.52)	neutral(0.098)	HMMPfam_FKBP12
RPAP2	79871	genome.wustl.edu	37	1	92789026	92789026	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370343	+1	known	p.Q183	0.993	259	0%	207	32.9%	2	0%	-	-	-	NULL
RPAP2	79871	genome.wustl.edu	37	1	92798995	92798995	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370343	+1	known	p.I501	1.000	147	0%	123	18.7%	8	37.5%	-	-	-	NULL
GFI1	2672	genome.wustl.edu	37	1	92941620	92941620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127215.1	-1	reviewed	p.R412Q	1.000	26	0%	24	25%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM69A	388650	genome.wustl.edu	37	1	93312771	93312771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006605.3	-1	reviewed	p.K148T	1.000	77	0%	57	29.8%	0	-	probably_damaging(0.985)	tolerated(0.07)	deleterious(0.751)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93724417	93724417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206886.2	+1	validated	p.S1338Y	1.000	203	0%	155	27.1%	0	-	possibly_damaging(0.449)	tolerated(0.05)	deleterious(0.492)	NULL
FNBP1L	54874	genome.wustl.edu	37	1	94000411	94000411	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000271234	+1	known	p.K312N	1.000	43	0%	28	32.1%	4	0%	possibly_damaging(0.787)	deleterious(0.04)	deleterious(0.643)	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94341981	94341981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014597.3	-1	provisional	p.Y504H	1.000	117	0%	94	24.5%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA4	24	genome.wustl.edu	37	1	94490534	94490534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000350.2	-1	reviewed	p.T1537M	1.000	156	0%	104	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA4	24	genome.wustl.edu	37	1	94543416	94543416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000350.2	-1	reviewed	p.D462Y	0.725	668	0%	645	27.9%	0	-	benign(0.091)	tolerated(1)	neutral(0.006)	NULL
ABCA4	24	genome.wustl.edu	37	1	94574170	94574170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000350.2	-1	reviewed	p.F135L	0.949	117	0%	98	18.4%	0	-	benign(0)	tolerated(1)	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94652061	94652061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004815.3	-1	validated	p.E592*	1.000	414	0%	382	37.4%	0	-	-	-	-	superfamily_Cysteine-rich domain
ABCD3	5825	genome.wustl.edu	37	1	94944095	94944095	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122674.1	+1	reviewed	p.L234V	0.004	39	0%	30	23.3%	1	0%	benign(0.05)	deleterious(0.02)	neutral(0.386)	NULL
F3	2152	genome.wustl.edu	37	1	95005894	95005894	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001993.4	-1	reviewed	p.L44*	0.993	106	0%	52	28.8%	2	0%	-	-	-	HMMPfam_Tissue_fac,superfamily_FN_III-like
TMEM56	148534	genome.wustl.edu	37	1	95657350	95657350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152487.2	+1	validated	p.G240C	1.000	296	0%	282	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00724
RWDD3	25950	genome.wustl.edu	37	1	95710036	95710036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015485.4	+1	validated	p.E119K	0.117	196	0%	178	31.5%	5	40%	benign(0.411)	tolerated(0.11)	neutral(0.405)	superfamily_UBC-like
DPYD	1806	genome.wustl.edu	37	1	97770921	97770921	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000110.3	-1	reviewed	p.G731	0.685	177	0%	190	30.5%	7	14.2%	-	-	-	HMMPfam_DHO_dh,superfamily_SSF51395
LPPR4	9890	genome.wustl.edu	37	1	99771368	99771368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014839.4	+1	reviewed	p.S365I	0.985	316	0%	236	30.5%	0	-	benign(0.123)	deleterious(0.01)	neutral(0.416)	NULL
PALMD	54873	genome.wustl.edu	37	1	100155306	100155306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017734.4	+1	validated	p.K497T	0.028	209	0%	232	24.1%	21	66.6%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SLC35A3	23443	genome.wustl.edu	37	1	100459210	100459210	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012243.1	+1	provisional	p.G34*	1.000	316	0%	275	26.2%	1	0%	-	-	-	NULL
VCAM1	7412	genome.wustl.edu	37	1	101200264	101200264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001078.2	+1	reviewed	p.E667*	0.136	212	0.5%	207	25.1%	3	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
S1PR1	1901	genome.wustl.edu	37	1	101705689	101705689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424264	+1	known	p.R366I	0.847	115	0%	68	23.5%	5	0%	-	-	-	NULL
OLFM3	118427	genome.wustl.edu	37	1	102270432	102270432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058170.2	-1	validated	p.R247C	1.000	190	0%	180	31.1%	0	-	possibly_damaging(0.836)	tolerated(0.07)	deleterious(0.639)	HMMPfam_OLF,HMMSmart_SM00284
COL11A1	1301	genome.wustl.edu	37	1	103470019	103470019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080629.2	-1	reviewed	p.R654I	1.000	104	0%	54	40.7%	0	-	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	HMMPfam_Collagen
COL11A1	1301	genome.wustl.edu	37	1	103484391	103484391	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080629.2	-1	reviewed	p.G457*	1.000	171	0%	110	32.7%	0	-	-	-	-	HMMPfam_Collagen
PRMT6	55170	genome.wustl.edu	37	1	107600414	107600414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018137.2	+1	validated	p.Y300*	1.000	28	0%	27	44.4%	3	100%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
HENMT1	113802	genome.wustl.edu	37	1	109193685	109193685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102592.1	-1	validated	p.K182T	0.996	291	0%	198	27.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53335
PRPF38B	55119	genome.wustl.edu	37	1	109241963	109241963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018061.2	+1	validated	p.I321T	0.691	300	0%	238	39.9%	27	33.3%	unknown(0)	tolerated(0.78)	-	NULL
FNDC7	163479	genome.wustl.edu	37	1	109270458	109270458	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370019	+1	known	p.P353L	0.000	261	0.4%	196	32.1%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
GPSM2	29899	genome.wustl.edu	37	1	109461400	109461400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013296.4	+1	validated	p.N477H	0.020	217	0.5%	154	10.4%	4	100%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
AHCYL1	10768	genome.wustl.edu	37	1	110559066	110559066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006621.4	+1	validated	p.E295*	1.000	193	0%	97	40.2%	7	14.2%	-	-	-	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
KCNA3	3738	genome.wustl.edu	37	1	111215836	111215836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002232.3	-1	reviewed	p.I532	0.990	171	0.6%	77	14.3%	0	-	-	-	-	NULL
KCNA3	3738	genome.wustl.edu	37	1	111215979	111215979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002232.3	-1	reviewed	p.Y485H	1.000	164	0%	68	10.3%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	superfamily_SSF81324
CEPT1	10390	genome.wustl.edu	37	1	111724893	111724893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007794.1	+1	reviewed	p.R267C	1.000	193	0%	108	44.4%	2	50%	benign(0.011)	tolerated(0.18)	neutral(0.057)	NULL
ST7L	54879	genome.wustl.edu	37	1	113126649	113126649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017744.4	-1	reviewed	p.I267M	1.000	187	0%	124	33.1%	0	-	probably_damaging(0.978)	tolerated(0.23)	neutral(0.462)	HMMPfam_ST7
LRIG2	9860	genome.wustl.edu	37	1	113636067	113636067	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014813.1	+1	provisional	p.I132	1.000	126	0%	85	32.9%	0	-	-	-	-	superfamily_SSF52047
LRIG2	9860	genome.wustl.edu	37	1	113653131	113653131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014813.1	+1	provisional	p.V582A	1.000	121	0%	68	19.1%	0	-	benign(0.015)	tolerated(0.09)	neutral(0.297)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
RSBN1	54665	genome.wustl.edu	37	1	114340491	114340491	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018364.3	-1	validated	p.E291*	1.000	574	0%	481	40.5%	2	0%	-	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114372580	114372580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015967.4	-1	reviewed	p.D709N	1.000	128	0%	108	39.8%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AP4B1	10717	genome.wustl.edu	37	1	114444458	114444458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006594.2	-1	validated	p.R130W	1.000	216	0%	185	36.2%	10	80%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
HIPK1	204851	genome.wustl.edu	37	1	114499868	114499868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198268.1	+1	reviewed	p.T572I	1.000	136	0%	96	33.3%	2	100%	possibly_damaging(0.858)	deleterious(0.02)	deleterious(0.714)	NULL
SYT6	148281	genome.wustl.edu	37	1	114641717	114641717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_205848.2	-1	validated	p.R370*	0.815	405	0%	301	38.2%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TRIM33	51592	genome.wustl.edu	37	1	114952919	114952919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015906.3	-1	reviewed	p.S694N	1.000	151	0%	133	33.8%	0	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
DENND2C	163259	genome.wustl.edu	37	1	115130393	115130393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198459.3	-1	validated	p.T814N	1.000	125	0%	117	31.6%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_dDENN,HMMSmart_dDENN
CSDE1	7812	genome.wustl.edu	37	1	115262355	115262355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130523.1	-1	validated	p.F702L	1.000	203	0.5%	106	33%	127	25.1%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
SYCP1	6847	genome.wustl.edu	37	1	115420824	115420824	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003176.2	+1	validated	e11+1	1.000	216	0%	138	36.2%	0	-	-	-	-	-
TTF2	8458	genome.wustl.edu	37	1	117617988	117617988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003594.3	+1	reviewed	p.L261P	0.000	456	0%	353	10.8%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
TTF2	8458	genome.wustl.edu	37	1	117619443	117619443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003594.3	+1	reviewed	p.R524Q	0.476	106	0%	47	19.1%	0	-	benign(0.198)	tolerated(0.14)	neutral(0.269)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118539056	118539056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206996.2	-1	validated	p.L1664I	0.007	261	0%	218	33%	0	-	possibly_damaging(0.555)	tolerated(0.05)	deleterious(0.535)	NULL
HSD3B2	3284	genome.wustl.edu	37	1	119964697	119964697	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000198.3	+1	reviewed	p.G191	0.998	156	0%	128	32%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
NBPF7	343505	genome.wustl.edu	37	1	120381867	120381867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001047980.1	-1	predicted	p.L260M	0.001	558	0%	338	37.6%	0	-	-	-	-	HMMPfam_DUF1220
NOTCH2	4853	genome.wustl.edu	37	1	120493434	120493434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024408.2	-1	reviewed	p.E798*	1.000	224	0%	116	9.5%	0	-	-	-	-	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
PDE4DIP	9659	genome.wustl.edu	37	1	144865845	144865845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014644.4	-1	validated	p.R1912Q	0.002	628	0%	404	19.1%	0	-	benign(0.002)	tolerated(1)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144877175	144877175	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014644.4	-1	validated	p.R1504	0.998	275	0.4%	180	13.3%	0	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144917908	144917908	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014644.4	-1	validated	p.R460*	0.976	633	0%	570	18.9%	1	100%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144946693	144946693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014644.4	-1	validated	p.E190*	0.981	124	0%	92	15.2%	0	-	-	-	-	NULL
ITGA10	8515	genome.wustl.edu	37	1	145533930	145533930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003637.3	+1	reviewed	p.L526M	0.422	139	0%	185	14.6%	2	0%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
CHD1L	9557	genome.wustl.edu	37	1	146766162	146766162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004284.3	+1	validated	p.R860W	1.000	455	0%	414	29.2%	51	49%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS45	11311	genome.wustl.edu	37	1	150040799	150040799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007259.3	+1	reviewed	p.I69S	1.000	150	0.7%	154	14.9%	5	0%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
PLEKHO1	51177	genome.wustl.edu	37	1	150128271	150128271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016274.4	+1	provisional	p.E63D	0.999	319	0%	365	30.4%	10	10%	benign(0.002)	tolerated(0.21)	neutral(0.044)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
HORMAD1	84072	genome.wustl.edu	37	1	150680763	150680763	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032132.3	-1	provisional	p.C172	1.000	135	0%	164	28.7%	0	-	-	-	-	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
SETDB1	9869	genome.wustl.edu	37	1	150936528	150936528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145415.1	+1	reviewed	p.R1243C	1.000	155	0%	144	28.5%	64	34.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PRUNE	58497	genome.wustl.edu	37	1	151006367	151006367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021222.1	+1	provisional	p.L340R	1.000	239	0%	358	10.9%	7	57.1%	benign(0.002)	tolerated(0.85)	neutral(0.001)	HMMPfam_DHHA2
PRUNE	58497	genome.wustl.edu	37	1	151006704	151006704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021222.1	+1	provisional	p.K452N	0.999	133	0%	245	29.4%	7	42.8%	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
C1orf56	54964	genome.wustl.edu	37	1	151020503	151020503	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017860.3	+1	predicted	p.T60	0.000	34	0%	36	13.9%	14	35.7%	-	-	-	NULL
TMOD4	29765	genome.wustl.edu	37	1	151144790	151144790	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013353.2	-1	validated	p.Y147*	1.000	108	0%	146	27.4%	2	50%	-	-	-	HMMPfam_Tropomodulin
ZNF687	57592	genome.wustl.edu	37	1	151259765	151259765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020832.1	+1	provisional	p.K333T	1.000	70	0%	77	27.3%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SELENBP1	8991	genome.wustl.edu	37	1	151339278	151339278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003944.2	-1	reviewed	p.R195Q	1.000	208	0.5%	279	40.1%	226	51.7%	probably_damaging(0.979)	tolerated(0.13)	deleterious(0.674)	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C
SNX27	81609	genome.wustl.edu	37	1	151641067	151641067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030918.5	+1	reviewed	p.L369I	1.000	242	0%	291	18.6%	1	100%	possibly_damaging(0.739)	tolerated(0.2)	neutral(0.320)	NULL
MRPL9	65005	genome.wustl.edu	37	1	151732590	151732590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031420.2	-1	reviewed	p.R247I	1.000	86	0%	129	22.5%	67	26.8%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
OAZ3	51686	genome.wustl.edu	37	1	151739764	151739764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016178.2	+1	reviewed	p.E98K	1.000	106	0%	94	28.7%	7	71.4%	probably_damaging(0.959)	tolerated(0.71)	neutral(0.404)	HMMPfam_ODC_AZ
TCHH	7062	genome.wustl.edu	37	1	152083793	152083793	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007113.2	-1	provisional	p.L634	0.001	74	0%	122	33.6%	0	-	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152086421	152086421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007113.2	-1	provisional	p.R46W	0.991	112	0%	93	23.7%	0	-	probably_damaging(0.98)	-	-	HMMPfam_S_100,superfamily_SSF47473
HRNR	388697	genome.wustl.edu	37	1	152193958	152193958	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009931.1	-1	validated	p.N49	1.000	60	0%	36	36.1%	0	-	-	-	-	superfamily_SSF47473
FLG2	388698	genome.wustl.edu	37	1	152323281	152323281	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014342.2	-1	provisional	p.H2327Q	0.008	490	0%	502	30.9%	0	-	possibly_damaging(0.448)	tolerated(0.13)	neutral(0.399)	NULL
FLG2	388698	genome.wustl.edu	37	1	152326903	152326903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014342.2	-1	provisional	p.S1120L	0.001	635	0%	519	32.9%	0	-	unknown(0)	tolerated(0.34)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152331354	152331354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014342.2	-1	provisional	p.D3N	0.000	163	0%	149	35.6%	0	-	unknown(0)	tolerated(0.98)	-	superfamily_SSF47473
LCE2B	26239	genome.wustl.edu	37	1	152659386	152659386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014357.4	+1	reviewed	p.K23E	0.037	382	0%	480	20.4%	0	-	unknown(0)	-	-	NULL
LCE1B	353132	genome.wustl.edu	37	1	152785005	152785005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178349.1	+1	validated	p.R28I	0.326	287	0%	375	33.1%	0	-	unknown(0)	-	-	NULL
SPRR3	6707	genome.wustl.edu	37	1	152975933	152975933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001097589.1	+1	validated	p.Y146C	0.000	145	0%	167	13.2%	0	-	benign(0.003)	tolerated(0.15)	neutral(0.241)	HMMPfam_Cornifin
LELP1	149018	genome.wustl.edu	37	1	153177324	153177324	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010857.1	+1	provisional	p.C47	0.877	210	0%	244	36.9%	0	-	-	-	-	NULL
S100A7L2	645922	genome.wustl.edu	37	1	153410692	153410692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001045479.1	-1	validated	p.E49D	0.851	138	0%	85	29.4%	0	-	benign(0.181)	tolerated(0.76)	neutral(0.018)	superfamily_EF-hand
NPR1	4881	genome.wustl.edu	37	1	153652980	153652980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000906.3	+1	validated	p.I242T	1.000	29	0%	61	26.2%	2	0%	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NPR1	4881	genome.wustl.edu	37	1	153659772	153659772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000906.3	+1	validated	p.D678N	0.999	90	1.1%	249	36.1%	0	-	possibly_damaging(0.735)	deleterious(0.01)	deleterious(0.674)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
INTS3	65123	genome.wustl.edu	37	1	153713125	153713125	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023015.3	+1	validated	e2-2	1.000	66	0%	72	36.1%	0	-	-	-	-	-
INTS3	65123	genome.wustl.edu	37	1	153719539	153719539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023015.3	+1	validated	p.R142H	1.000	92	0%	123	26%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
INTS3	65123	genome.wustl.edu	37	1	153736332	153736332	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023015.3	+1	validated	p.V597	1.000	57	0%	56	26.8%	21	47.6%	-	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153745425	153745425	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023015.3	+1	validated	p.A973	0.000	115	0%	98	32.7%	18	61.1%	-	-	-	NULL
NUP210L	91181	genome.wustl.edu	37	1	154018612	154018612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207308.2	-1	validated	p.P1210H	0.998	122	0%	112	20.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154042813	154042813	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207308.2	-1	validated	p.F830	0.210	395	0.3%	462	33.8%	0	-	-	-	-	NULL
NUP210L	91181	genome.wustl.edu	37	1	154098922	154098922	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207308.2	-1	validated	p.Y401	0.000	315	0%	341	24%	0	-	-	-	-	NULL
C1orf189	388701	genome.wustl.edu	37	1	154171980	154171980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010979.1	-1	predicted	p.L77M	1.000	386	0%	550	22.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154201193	154201193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014847.3	+1	validated	p.P91S	1.000	108	0%	146	19.2%	21	47.6%	benign(0)	tolerated(1)	-	NULL
ADAR	103	genome.wustl.edu	37	1	154575055	154575055	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001111.3	-1	reviewed	p.E21	0.938	141	0%	160	13.1%	3	33.3%	-	-	-	NULL
KCNN3	3782	genome.wustl.edu	37	1	154680718	154680718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002249.4	-1	reviewed	p.E644*	0.998	219	0%	258	11.2%	2	0%	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	154996342	154996342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144622.2	-1	validated	p.E612D	0.865	29	0%	20	35%	0	-	benign(0.009)	tolerated(0.51)	neutral(0.009)	NULL
GBA	2629	genome.wustl.edu	37	1	155210448	155210448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000157.3	-1	reviewed	p.L30I	0.325	294	0%	430	27.2%	12	41.6%	benign(0.032)	tolerated(0.13)	neutral(0.254)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155450268	155450268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018489.2	-1	reviewed	p.K798T	0.990	424	0%	464	24.4%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155451184	155451184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018489.2	-1	reviewed	p.E493*	1.000	187	0%	224	31.7%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155452190	155452190	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018489.2	-1	reviewed	p.C157	0.643	296	0%	362	24.9%	1	100%	-	-	-	NULL
GON4L	54856	genome.wustl.edu	37	1	155735474	155735474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037533.1	-1	validated	p.K1264E	1.000	119	0%	155	29.7%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GON4L	54856	genome.wustl.edu	37	1	155744831	155744831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037533.1	-1	validated	p.S771N	0.400	140	0%	178	17.4%	9	0%	possibly_damaging(0.932)	deleterious(0.04)	deleterious(0.728)	NULL
GON4L	54856	genome.wustl.edu	37	1	155823394	155823394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037533.1	-1	validated	p.E60K	0.008	304	0%	292	25.3%	4	0%	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
ARHGEF2	9181	genome.wustl.edu	37	1	155938964	155938964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004723.3	-1	validated	p.E37G	1.000	65	0%	161	25.5%	20	10%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
C1orf85	112770	genome.wustl.edu	37	1	156262964	156262964	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144580.1	-1	provisional	p.D364	0.022	55	0%	50	14%	51	7.8%	-	-	-	NULL
RHBG	57127	genome.wustl.edu	37	1	156347820	156347820	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020407.3	+1	reviewed	p.I138	1.000	46	0%	79	16.5%	0	-	-	-	-	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
RHBG	57127	genome.wustl.edu	37	1	156351728	156351728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020407.3	+1	reviewed	p.F324L	1.000	65	0%	60	40%	0	-	possibly_damaging(0.592)	deleterious(0.01)	deleterious(0.610)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
NES	10763	genome.wustl.edu	37	1	156640514	156640514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006617.1	-1	reviewed	p.E1156K	0.000	79	0%	94	33%	18	22.2%	benign(0.244)	deleterious(0.01)	neutral(0.430)	NULL
NES	10763	genome.wustl.edu	37	1	156641960	156641960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006617.1	-1	reviewed	p.N674H	0.014	62	0%	53	20.8%	1	0%	benign(0.293)	deleterious(0.02)	deleterious(0.474)	NULL
NES	10763	genome.wustl.edu	37	1	156641994	156641994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006617.1	-1	reviewed	p.E662D	0.011	64	0%	58	34.5%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
ISG20L2	81875	genome.wustl.edu	37	1	156697157	156697157	+	Silent	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030980.1	-1	provisional	p.A96	0.021	88	0%	88	29.5%	5	20%	-	-	-	NULL
ISG20L2	81875	genome.wustl.edu	37	1	156697244	156697244	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030980.1	-1	provisional	p.V67	0.000	116	0%	111	24.3%	4	25%	-	-	-	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156704174	156704174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015997.3	+1	validated	p.R337Q	0.995	16	0%	19	57.9%	33	9%	benign(0.063)	tolerated(0.24)	neutral(0.041)	NULL
INSRR	3645	genome.wustl.edu	37	1	156812278	156812278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014215.1	-1	validated	p.S1050Y	1.000	89	0%	93	22.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
INSRR	3645	genome.wustl.edu	37	1	156823731	156823731	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014215.1	-1	validated	p.L150	0.997	28	0%	21	28.6%	1	0%	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
NTRK1	4914	genome.wustl.edu	37	1	156845430	156845430	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002529.3	+1	reviewed	p.I491	0.082	43	0%	48	12.5%	0	-	-	-	-	NULL
PEAR1	375033	genome.wustl.edu	37	1	156874553	156874553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080471.1	+1	provisional	p.T39A	0.951	67	0%	87	16.1%	0	-	benign(0.156)	deleterious(0.04)	neutral(0.363)	HMMPfam_EMI
FCRL5	83416	genome.wustl.edu	37	1	157509035	157509035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031281.2	-1	validated	p.H415N	0.001	177	0%	174	30.5%	0	-	benign(0.29)	deleterious(0.01)	deleterious(0.495)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL2	79368	genome.wustl.edu	37	1	157739673	157739673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030764.3	-1	reviewed	p.S193F	0.001	195	0%	182	22%	0	-	probably_damaging(0.956)	tolerated(0.2)	neutral(0.449)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL2	79368	genome.wustl.edu	37	1	157740317	157740317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030764.3	-1	reviewed	p.F64L	0.000	256	0%	168	36.9%	0	-	benign(0.047)	tolerated(0.69)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD5L	922	genome.wustl.edu	37	1	157804401	157804401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005894.2	-1	validated	p.A172T	0.968	84	1.2%	93	11.8%	0	-	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD5L	922	genome.wustl.edu	37	1	157804522	157804522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005894.2	-1	validated	p.F131L	0.000	59	0%	63	30.2%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
CD1D	912	genome.wustl.edu	37	1	158151825	158151825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001766.3	+1	reviewed	p.P111L	0.979	409	0%	362	12.4%	1	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1D	912	genome.wustl.edu	37	1	158152792	158152792	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001766.3	+1	reviewed	p.E244	0.931	169	0%	178	18%	4	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
CD1C	911	genome.wustl.edu	37	1	158263357	158263357	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000443761	+1	known	p.F269L	0.000	303	0%	439	38.3%	1	0%	-	-	-	NULL
CD1B	910	genome.wustl.edu	37	1	158300498	158300498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000412358	-1	known	p.P139L	0.000	312	0%	373	27.6%	0	-	-	-	-	NULL
CD1E	913	genome.wustl.edu	37	1	158326628	158326628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030893.2	+1	reviewed	p.S370L	0.000	197	0%	221	24.9%	2	0%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
OR10T2	128360	genome.wustl.edu	37	1	158369164	158369164	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004475.1	-1	provisional	p.I31	0.073	88	0%	86	20.9%	0	-	-	-	-	superfamily_SSF81321
OR10K2	391107	genome.wustl.edu	37	1	158390387	158390387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004476.1	-1	provisional	p.K90N	0.017	525	0%	595	20%	0	-	possibly_damaging(0.889)	tolerated(0.1)	deleterious(0.636)	HMMPfam_7tm_1,superfamily_SSF81321
OR6Y1	391112	genome.wustl.edu	37	1	158517133	158517133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005189.1	-1	provisional	p.L255I	0.102	273	0%	248	22.6%	0	-	probably_damaging(0.979)	tolerated(1)	neutral(0.422)	HMMPfam_7tm_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158549549	158549549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004477.1	-1	provisional	p.F47L	0.001	370	0%	372	29.3%	0	-	possibly_damaging(0.746)	deleterious(0)	deleterious(0.719)	superfamily_SSF81321
OR10Z1	128368	genome.wustl.edu	37	1	158576971	158576971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004478.1	+1	provisional	p.V248G	0.966	555	0%	596	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158585091	158585091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.T2235A	1.000	428	0%	393	16.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158621162	158621162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.R1158W	0.473	156	0%	195	13.8%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158627470	158627470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.E868K	1.000	197	0%	211	22.3%	0	-	benign(0.245)	tolerated(0.06)	neutral(0.348)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158644195	158644195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.R425L	1.000	516	0%	573	34%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158651401	158651401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.E149D	1.000	221	0%	242	35.5%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158654930	158654930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003126.2	-1	reviewed	p.D78N	0.997	180	0%	256	28.5%	0	-	benign(0.388)	tolerated(0.08)	neutral(0.424)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K2	81448	genome.wustl.edu	37	1	158669887	158669887	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005279.1	-1	provisional	p.L186	0.149	386	0%	374	11.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6K3	391114	genome.wustl.edu	37	1	158687250	158687250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005327.2	-1	validated	p.R235I	0.000	303	0%	455	32.1%	0	-	possibly_damaging(0.946)	tolerated(0.38)	neutral(0.408)	HMMPfam_7tm_1,superfamily_SSF81321
OR6N1	128372	genome.wustl.edu	37	1	158735585	158735585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005185.1	-1	provisional	p.E296D	0.967	497	0%	556	31.5%	0	-	benign(0.008)	tolerated(1)	-	superfamily_SSF81321
OR6N1	128372	genome.wustl.edu	37	1	158736233	158736233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005185.1	-1	provisional	p.K80N	1.000	300	0%	334	25.4%	0	-	probably_damaging(0.999)	tolerated(0.45)	deleterious(0.502)	HMMPfam_7tm_1,superfamily_SSF81321
MNDA	4332	genome.wustl.edu	37	1	158812191	158812191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002432.1	+1	reviewed	p.R83Q	0.000	219	0%	235	32.3%	0	-	benign(0.236)	deleterious(0.02)	neutral(0.407)	HMMPfam_PAAD_DAPIN
MNDA	4332	genome.wustl.edu	37	1	158815562	158815562	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002432.1	+1	reviewed	p.F252	0.102	148	0%	126	15.1%	2	0%	-	-	-	HMMPfam_HIN
PYHIN1	149628	genome.wustl.edu	37	1	158906911	158906911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152501.3	+1	validated	p.E71*	0.000	285	0%	236	36.9%	1	0%	-	-	-	HMMPfam_PAAD_DAPIN
PYHIN1	149628	genome.wustl.edu	37	1	158913694	158913694	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152501.3	+1	validated	p.R373*	0.001	124	0%	85	25.9%	8	0%	-	-	-	HMMPfam_HIN
AIM2	9447	genome.wustl.edu	37	1	159038473	159038473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004833.1	-1	reviewed	p.S94L	0.000	139	0%	112	30.4%	3	0%	benign(0.099)	tolerated(0.08)	neutral(0.307)	NULL
CADM3	57863	genome.wustl.edu	37	1	159162412	159162412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021189.3	+1	validated	p.E126K	1.000	167	0%	203	33%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CADM3	57863	genome.wustl.edu	37	1	159162507	159162507	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021189.3	+1	validated	p.L157	0.998	211	0.5%	225	24.4%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
DARC	2532	genome.wustl.edu	37	1	159176129	159176129	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122951.1	+1	reviewed	p.T302	0.000	277	0%	315	24.1%	72	0%	-	-	-	NULL
FCER1A	2205	genome.wustl.edu	37	1	159273809	159273809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002001.2	+1	reviewed	p.F56L	0.000	188	0%	167	25.1%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
OR10J1	26476	genome.wustl.edu	37	1	159409744	159409744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012351.2	+1	validated	p.L66I	0.953	233	0%	228	12.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10J5	127385	genome.wustl.edu	37	1	159504990	159504990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004469.1	-1	provisional	p.D270Y	0.997	211	0%	239	33.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10J5	127385	genome.wustl.edu	37	1	159505559	159505559	+	Missense_Mutation	SNP	C	C	T	rs146863607		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004469.1	-1	provisional	p.R80Q	0.000	367	0%	398	21.9%	0	-	possibly_damaging(0.478)	tolerated(0.37)	neutral(0.177)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC19	25790	genome.wustl.edu	37	1	159858195	159858195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012337.2	-1	validated	p.E122*	0.995	76	0%	95	14.7%	1	0%	-	-	-	NULL
IGSF9	57549	genome.wustl.edu	37	1	159897206	159897206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135050.1	-1	validated	p.D1157Y	0.997	57	0%	34	14.7%	14	21.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
LOC100287448	100287448	genome.wustl.edu	37	1	160012104	160012104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342164.1	+1	model	p.R112C	0.573	249	0%	357	10.6%	0	-	-	-	-	NULL
ATP1A4	480	genome.wustl.edu	37	1	160124923	160124923	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144699.3	+1	reviewed	p.K99T	1.000	261	0%	305	26.2%	0	-	possibly_damaging(0.884)	deleterious(0.05)	deleterious(0.690)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160141151	160141151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144699.3	+1	reviewed	p.E534D	1.000	149	0%	132	32.6%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160164891	160164891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001231.4	+1	reviewed	p.Y179*	1.000	89	0%	151	23.2%	3	0%	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
COPA	1314	genome.wustl.edu	37	1	160261863	160261863	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098398.1	-1	reviewed	p.F1038C	1.000	386	0%	464	24.8%	115	45.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_COPI_C
SLAMF7	57823	genome.wustl.edu	37	1	160718154	160718154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021181.3	+1	provisional	p.R76C	0.000	166	0%	125	24.8%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_V-set,superfamily_Immunoglobulin
USF1	7391	genome.wustl.edu	37	1	161012364	161012364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007122.3	-1	reviewed	p.R52Q	1.000	42	0%	41	36.6%	43	44.1%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
USF1	7391	genome.wustl.edu	37	1	161012651	161012651	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007122.3	-1	reviewed	p.T10	0.347	142	0%	152	36.2%	44	27.2%	-	-	-	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161017597	161017597	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025598.1	-1	validated	p.E1072*	0.889	107	0%	137	31.4%	8	25%	-	-	-	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018468	161018468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025598.1	-1	validated	p.E781D	0.830	452	0%	469	28.8%	5	20%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018566	161018566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025598.1	-1	validated	p.E749*	0.008	500	0%	505	61.4%	3	33.3%	-	-	-	NULL
HSPA6	3310	genome.wustl.edu	37	1	161496275	161496275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002155.3	+1	validated	p.F609L	0.991	20	0%	18	27.8%	16	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
FCGR3A	2214	genome.wustl.edu	37	1	161519558	161519558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000569.6	-1	reviewed	p.S26Y	0.002	96	0%	95	10.5%	6	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
FCGR2C	9103	genome.wustl.edu	37	1	161559538	161559538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201563.4	+1	reviewed	p.D107G	0.623	143	0%	230	31.7%	11	0%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCGR2B	2213	genome.wustl.edu	37	1	161643021	161643021	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004001.3	+1	validated	e4+2	0.948	160	0%	125	20.8%	0	-	-	-	-	-
ATF6	22926	genome.wustl.edu	37	1	161762043	161762043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007348.2	+1	validated	p.I205T	1.000	527	0%	538	31.4%	12	33.3%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161953717	161953717	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015441.1	-1	provisional	p.G667	0.994	116	0%	131	29.8%	40	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
LOC100287509	100287509	genome.wustl.edu	37	1	162949561	162949561	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342119.1	-1	model	p.S8*	0.000	36	0%	38	39.5%	0	-	-	-	-	HMMPfam_COX7B
ALDH9A1	223	genome.wustl.edu	37	1	165636625	165636625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000696.3	-1	reviewed	p.L424I	0.971	171	0%	205	27.8%	44	47.7%	benign(0.066)	deleterious(0.04)	neutral(0.353)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ILDR2	387597	genome.wustl.edu	37	1	166905942	166905942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199351.1	-1	provisional	p.V197I	0.013	39	0%	49	46.9%	1	100%	benign(0.001)	tolerated(0.53)	neutral(0.007)	HMMPfam_LSR
MAEL	84944	genome.wustl.edu	37	1	166973532	166973532	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032858.1	+1	validated	p.I213	0.900	174	0%	215	14.4%	0	-	-	-	-	NULL
MAEL	84944	genome.wustl.edu	37	1	166974588	166974588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032858.1	+1	validated	p.R267*	0.998	162	0%	190	21.1%	0	-	-	-	-	NULL
MAEL	84944	genome.wustl.edu	37	1	166985475	166985475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032858.1	+1	validated	p.E288*	1.000	187	0%	236	11.4%	1	0%	-	-	-	NULL
MAEL	84944	genome.wustl.edu	37	1	166987081	166987081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032858.1	+1	validated	p.S309Y	1.000	373	0%	529	35.5%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097389	167097389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080426.1	+1	provisional	p.F1007L	0.952	266	0%	214	21%	0	-	benign(0.041)	tolerated(0.29)	neutral(0.032)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167849384	167849384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018417.4	-1	reviewed	p.I395	0.960	69	0%	78	24.4%	0	-	-	-	-	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GPR161	23432	genome.wustl.edu	37	1	168065851	168065851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153832.1	-1	provisional	p.R332C	0.997	107	0%	87	29.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
TBX19	9095	genome.wustl.edu	37	1	168260560	168260560	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000431969	+1	known	p.L55I	1.000	156	0%	181	26.5%	1	0%	-	-	-	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
NME7	29922	genome.wustl.edu	37	1	169267813	169267813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013330.3	-1	validated	p.S210Y	1.000	393	0%	421	30.4%	18	33.3%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
C1orf114	57821	genome.wustl.edu	37	1	169391457	169391457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021179.1	-1	predicted	p.S71Y	0.000	314	0%	229	27.1%	0	-	possibly_damaging(0.849)	tolerated(0.08)	deleterious(0.626)	NULL
SLC19A2	10560	genome.wustl.edu	37	1	169446766	169446766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006996.2	-1	reviewed	p.I145T	1.000	149	0%	200	28.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
F5	2153	genome.wustl.edu	37	1	169510785	169510785	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000130.4	-1	reviewed	p.V1181	0.007	598	0%	653	22.1%	2	0%	-	-	-	NULL
F5	2153	genome.wustl.edu	37	1	169511950	169511950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000130.4	-1	reviewed	p.E793A	0.006	541	0%	458	15.5%	0	-	benign(0.102)	deleterious(0.01)	neutral(0.414)	NULL
F5	2153	genome.wustl.edu	37	1	169555523	169555523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000130.4	-1	reviewed	p.F34L	1.000	64	0%	100	14%	0	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169578790	169578790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003005.3	-1	reviewed	p.R429W	0.000	189	0%	204	31.9%	1	0%	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SCYL3	57147	genome.wustl.edu	37	1	169828244	169828244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181093.2	-1	validated	p.R417Q	1.000	259	0%	173	17.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	169985670	169985670	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014970.2	-1	reviewed	p.S372	0.916	341	0%	227	11%	8	37.5%	-	-	-	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat
C1orf129	80133	genome.wustl.edu	37	1	170964610	170964610	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426136	+1	known	p.D32N	0.846	306	0%	245	34.3%	0	-	-	-	-	NULL
C1orf129	80133	genome.wustl.edu	37	1	170965723	170965723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426136	+1	known	p.E78*	0.001	466	0%	304	23.7%	0	-	benign(0.025)	tolerated(0.17)	neutral(0.060)	NULL
FMO1	2326	genome.wustl.edu	37	1	171254627	171254627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002021.1	+1	reviewed	p.L515I	0.901	154	0%	200	33.5%	0	-	benign(0.206)	deleterious(0.04)	neutral(0.369)	HMMPfam_FMO-like
FMO4	2329	genome.wustl.edu	37	1	171303720	171303720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002022.1	+1	reviewed	p.S333Y	0.971	345	0%	280	28.2%	0	-	benign(0.268)	deleterious(0)	deleterious(0.473)	HMMPfam_FMO-like
PRRC2C	23215	genome.wustl.edu	37	1	171481288	171481288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015172.3	+1	validated	p.S21G	1.000	80	0%	75	17.3%	0	-	unknown(0)	-	-	HMMPfam_BAT2_N
PRRC2C	23215	genome.wustl.edu	37	1	171510257	171510257	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015172.3	+1	validated	p.R1216*	1.000	158	0%	111	27%	8	12.5%	-	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171510392	171510392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015172.3	+1	validated	p.R1261W	1.000	264	0.4%	157	26.8%	1	0%	unknown(0)	-	-	NULL
MYOC	4653	genome.wustl.edu	37	1	171605715	171605715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000261.1	-1	reviewed	p.D289N	0.999	150	0%	151	33.1%	1	0%	possibly_damaging(0.882)	tolerated(0.07)	deleterious(0.663)	HMMPfam_OLF,HMMSmart_SM00284
DNM3	26052	genome.wustl.edu	37	1	172348233	172348233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015569.3	+1	validated	p.R657C	1.000	128	0%	125	34.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GED,HMMSmart_GED
C1orf9	51430	genome.wustl.edu	37	1	172501865	172501865	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000367723	+1	known	p.E85*	0.000	45	0%	45	33.3%	0	-	-	-	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173476024	173476024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178527.3	-1	validated	p.P1066T	1.000	138	0%	99	30.3%	0	-	probably_damaging(0.982)	tolerated(0.06)	deleterious(0.749)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173486711	173486711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178527.3	-1	validated	p.I958L	0.031	256	0%	255	19.6%	0	-	benign(0.007)	tolerated(1)	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
KLHL20	27252	genome.wustl.edu	37	1	173744870	173744870	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014458.3	+1	reviewed	p.I509	1.000	253	0%	295	22%	4	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CENPL	91687	genome.wustl.edu	37	1	173776413	173776413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127181.2	-1	validated	p.L138I	1.000	198	0%	179	37.4%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
DARS2	55157	genome.wustl.edu	37	1	173795869	173795869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018122.4	+1	reviewed	p.R58C	1.000	56	0%	59	16.9%	4	25%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Nucleic_acid_OB
GPR52	9293	genome.wustl.edu	37	1	174417725	174417725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005684.4	+1	validated	p.R159I	1.000	417	0%	397	21.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
GPR52	9293	genome.wustl.edu	37	1	174418235	174418235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005684.4	+1	validated	p.R329Q	1.000	302	0%	251	32.7%	0	-	possibly_damaging(0.623)	tolerated(0.24)	neutral(0.255)	superfamily_SSF81321
RABGAP1L	9910	genome.wustl.edu	37	1	174668743	174668743	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014857.3	+1	validated	p.F660	1.000	154	0%	154	35.7%	5	20%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TNN	63923	genome.wustl.edu	37	1	175052885	175052885	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022093.1	+1	validated	e4-1	0.998	61	0%	84	33.3%	0	-	-	-	-	-
TNN	63923	genome.wustl.edu	37	1	175086259	175086259	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022093.1	+1	validated	p.R768	1.000	130	0%	129	30.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNR	7143	genome.wustl.edu	37	1	175365849	175365849	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000422274	-1	known	p.L82I	1.000	67	0%	66	24.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RFWD2	64326	genome.wustl.edu	37	1	176145050	176145050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022457.5	-1	validated	p.F187L	1.000	160	0%	139	30.9%	5	100%	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	superfamily_RING/U-box
PAPPA2	60676	genome.wustl.edu	37	1	176664920	176664920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020318.2	+1	validated	p.R891C	1.000	349	0%	284	29.2%	0	-	probably_damaging(0.988)	tolerated(0.13)	deleterious(0.690)	HMMPfam_Peptidase_M43
FAM5B	57795	genome.wustl.edu	37	1	177250416	177250416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021165.2	+1	provisional	p.L702F	1.000	359	0%	271	19.6%	0	-	possibly_damaging(0.896)	tolerated(0.1)	deleterious(0.640)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177928126	177928126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000239472	-1	known	p.K43T	0.001	39	0%	27	14.8%	0	-	unknown(0)	deleterious(0.04)	-	NULL
SEC16B	89866	genome.wustl.edu	37	1	177934270	177934270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033127.2	-1	validated	p.E149K	0.986	38	0%	40	27.5%	0	-	possibly_damaging(0.527)	tolerated(0.06)	deleterious(0.500)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178269183	178269183	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170692.2	+1	reviewed	p.L111	0.985	98	0%	109	31.2%	4	25%	-	-	-	HMMSmart_PH,superfamily_SSF50729
RASAL2	9462	genome.wustl.edu	37	1	178425912	178425912	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000433130	+1	known	p.I166L	0.828	579	0%	517	16.8%	2	0%	-	-	-	HMMSmart_SM00323
SOAT1	6646	genome.wustl.edu	37	1	179311290	179311290	+	Silent	SNP	C	C	T	rs180839649	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003101.4	+1	provisional	p.N274	1.000	223	0%	262	28.6%	6	16.6%	-	-	-	HMMPfam_MBOAT
AXDND1	126859	genome.wustl.edu	37	1	179335713	179335713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144696.4	+1	validated	p.K23N	0.002	85	0%	94	11.7%	0	-	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179363168	179363168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144696.4	+1	validated	p.E332*	0.989	227	0%	244	27%	0	-	-	-	-	NULL
NPHS2	7827	genome.wustl.edu	37	1	179526170	179526170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014625.2	-1	reviewed	p.D244Y	1.000	89	0%	117	23.9%	0	-	possibly_damaging(0.906)	deleterious(0.04)	deleterious(0.708)	HMMPfam_Band_7,HMMSmart_SM00244,PatternScan_BAND_7
TDRD5	163589	genome.wustl.edu	37	1	179561846	179561846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173533.2	+1	provisional	p.E32D	0.999	202	0%	111	26.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179590204	179590204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173533.2	+1	provisional	p.S317Y	1.000	134	0%	202	24.3%	0	-	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179620195	179620195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173533.2	+1	provisional	p.S665Y	1.000	405	0.2%	372	16.1%	0	-	possibly_damaging(0.502)	deleterious(0.01)	deleterious(0.573)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179659877	179659877	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173533.2	+1	provisional	p.S915	0.422	169	0%	124	26.6%	0	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	179990023	179990023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014810.4	+1	reviewed	p.F1038L	0.075	124	0%	116	11.2%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
CEP350	9857	genome.wustl.edu	37	1	180063666	180063666	+	Missense_Mutation	SNP	C	C	T	rs141429392	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014810.4	+1	reviewed	p.S2809L	0.002	149	0%	119	30.3%	0	-	benign(0.005)	tolerated(0.35)	neutral(0.021)	NULL
QSOX1	5768	genome.wustl.edu	37	1	180153057	180153057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002826.4	+1	reviewed	p.M253I	0.018	356	0%	453	14.1%	63	30.1%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
LHX4	89884	genome.wustl.edu	37	1	180243594	180243594	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033343.2	+1	reviewed	p.T351	0.950	449	0.2%	399	11%	3	0%	-	-	-	NULL
ACBD6	84320	genome.wustl.edu	37	1	180257535	180257535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032360.3	-1	validated	p.S271Y	0.310	123	0%	98	31.6%	30	80%	benign(0.313)	deleterious(0.01)	deleterious(0.503)	NULL
ACBD6	84320	genome.wustl.edu	37	1	180399325	180399325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032360.3	-1	validated	p.E153*	1.000	313	0%	258	32.6%	9	0%	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181546929	181546929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000721.2	+1	reviewed	p.F180L	1.000	50	0%	56	25%	0	-	possibly_damaging(0.636)	tolerated(0.34)	neutral(0.245)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181727983	181727983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000721.2	+1	reviewed	p.K1528N	1.000	125	0%	117	18.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SHCBP1L	81626	genome.wustl.edu	37	1	182898835	182898835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030933.2	-1	validated	p.E377*	1.000	390	0%	361	28%	0	-	-	-	-	HMMSmart_CASH
LAMC1	3915	genome.wustl.edu	37	1	183083802	183083802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002293.3	+1	reviewed	p.F386L	1.000	202	0%	186	31.7%	9	22.2%	benign(0.416)	deleterious(0.05)	deleterious(0.480)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
RGL1	23179	genome.wustl.edu	37	1	183885684	183885684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015149.3	+1	validated	p.N653S	0.092	218	0%	234	34.6%	3	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
GLT25D2	23127	genome.wustl.edu	37	1	183914663	183914663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015101.2	-1	validated	p.I391S	1.000	313	0%	347	33.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Glyco_transf_25
GLT25D2	23127	genome.wustl.edu	37	1	183938602	183938602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015101.2	-1	validated	p.F211L	1.000	89	0%	111	26.1%	0	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
EDEM3	80267	genome.wustl.edu	37	1	184703759	184703759	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025191.3	-1	validated	p.E122*	1.000	47	0%	42	33.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
FAM129A	116496	genome.wustl.edu	37	1	184765198	184765198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052966.2	-1	validated	p.N567T	1.000	261	0%	243	27.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184863324	184863324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052966.2	-1	validated	p.G68V	0.597	215	0%	182	23.1%	1	0%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
SWT1	54823	genome.wustl.edu	37	1	185143832	185143832	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105518.1	+1	validated	p.E185*	0.016	168	0%	117	31.6%	0	-	-	-	-	NULL
SWT1	54823	genome.wustl.edu	37	1	185144058	185144058	+	Missense_Mutation	SNP	C	C	T	rs186283787	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105518.1	+1	validated	p.S260L	0.000	255	0%	182	22%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
SWT1	54823	genome.wustl.edu	37	1	185183764	185183764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105518.1	+1	validated	p.N700H	0.045	313	0%	257	32.7%	2	100%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185833660	185833660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.S133Y	1.000	219	0.5%	256	13.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_vWA-like
HMCN1	83872	genome.wustl.edu	37	1	185972912	185972912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.V1471I	0.657	140	0%	128	23.4%	1	100%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186026527	186026527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.L2436I	1.000	413	0.2%	359	31.8%	0	-	benign(0.39)	tolerated(0.3)	neutral(0.153)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186059997	186059997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.Q3279K	1.000	139	0%	193	25.4%	0	-	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186082064	186082064	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.E3704*	1.000	225	0%	140	33.6%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186088325	186088325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.A3951S	0.068	300	0.3%	294	23.1%	0	-	benign(0.052)	tolerated(0.71)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186158716	186158716	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031935.2	+1	reviewed	p.L5538	0.997	186	0%	196	29.1%	20	0%	-	-	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277620	186277620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005807.3	+1	reviewed	p.D923E	0.000	101	0%	111	28.8%	0	-	unknown(0)	deleterious(0)	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186278969	186278969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005807.3	+1	reviewed	p.T1156A	0.702	45	0%	62	9.7%	1	100%	possibly_damaging(0.919)	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
TPR	7175	genome.wustl.edu	37	1	186287903	186287903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003292.2	-1	reviewed	p.R2209Q	1.000	187	0%	251	36.7%	70	44.2%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
UCHL5	51377	genome.wustl.edu	37	1	192992063	192992063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015984.2	-1	validated	p.R280I	1.000	194	0%	142	24.6%	5	20%	possibly_damaging(0.609)	deleterious(0.01)	deleterious(0.617)	NULL
B3GALT2	8707	genome.wustl.edu	37	1	193149715	193149715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003783.3	-1	reviewed	p.K326N	1.000	154	0%	97	27.8%	0	-	probably_damaging(0.972)	deleterious(0.05)	deleterious(0.759)	HMMPfam_Galactosyl_T
CDC73	79577	genome.wustl.edu	37	1	193202160	193202160	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024529.4	+1	reviewed	p.Q398*	1.000	265	0%	244	14.3%	8	0%	-	-	-	HMMPfam_CDC73
KCNT2	343450	genome.wustl.edu	37	1	196577385	196577385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198503.2	-1	validated	p.D19Y	1.000	139	0%	122	13.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CFHR3	10878	genome.wustl.edu	37	1	196749041	196749041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021023.5	+1	reviewed	p.A123V	0.000	132	0%	151	11.3%	0	-	benign(0.18)	deleterious(0.01)	neutral(0.422)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR3	10878	genome.wustl.edu	37	1	196762475	196762475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021023.5	+1	reviewed	p.M275I	0.056	168	0%	113	35.4%	0	-	benign(0.029)	tolerated(0.21)	neutral(0.045)	superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196953220	196953220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030787.3	+1	reviewed	p.S128L	0.000	264	0%	231	22.9%	0	-	benign(0.341)	tolerated(0.05)	neutral(0.453)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197009831	197009831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001994.2	-1	reviewed	p.K591N	0.004	134	0%	114	33.3%	0	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197062325	197062325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.R3051W	0.371	295	0%	299	33.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197071998	197071998	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.K2128I	1.000	329	0%	402	23.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073649	197073649	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.R1578*	0.000	123	0%	173	28.9%	0	-	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073886	197073886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.R1499W	0.981	113	0%	144	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197074245	197074245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.S1379Y	0.999	161	0%	213	16.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197087046	197087046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018136.4	-1	reviewed	p.R1313I	0.006	481	0%	518	16%	1	0%	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CRB1	23418	genome.wustl.edu	37	1	197390725	197390725	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201253.1	+1	reviewed	p.E589	0.001	232	0%	299	30.8%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
DENND1B	163486	genome.wustl.edu	37	1	197509132	197509132	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142795.1	-1	validated	p.E473*	0.004	192	0%	118	22%	3	0%	-	-	-	NULL
LHX9	56956	genome.wustl.edu	37	1	197890505	197890505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020204.2	+1	reviewed	p.R150Q	1.000	71	0%	71	14.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NEK7	140609	genome.wustl.edu	37	1	198233296	198233296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133494.2	+1	validated	p.F101L	1.000	423	0%	322	26.7%	0	-	possibly_damaging(0.854)	deleterious(0.02)	deleterious(0.712)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTPRC	5788	genome.wustl.edu	37	1	198721725	198721725	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002838.3	+1	reviewed	p.R1109	1.000	269	0%	220	32.3%	8	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ZNF281	23528	genome.wustl.edu	37	1	200377298	200377298	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012482.3	-1	provisional	p.E512	0.994	84	0%	89	15.7%	0	-	-	-	-	NULL
KIF14	9928	genome.wustl.edu	37	1	200522733	200522733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014875.2	-1	validated	p.S1577Y	0.194	232	0%	170	16.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF14	9928	genome.wustl.edu	37	1	200567457	200567457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014875.2	-1	validated	p.M819I	1.000	132	0%	142	33.1%	1	100%	possibly_damaging(0.533)	tolerated(0.09)	deleterious(0.476)	superfamily_SMAD_FHA
CAMSAP2	23271	genome.wustl.edu	37	1	200729967	200729967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203459.1	+1	validated	p.E47A	1.000	312	0%	305	35.7%	1	100%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817485	200817485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203459.1	+1	validated	p.L530I	0.065	236	0%	243	24.7%	0	-	benign(0.055)	tolerated(0.55)	neutral(0.011)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200944720	200944720	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017596.2	-1	provisional	p.I1494	0.782	59	0%	74	37.8%	1	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TNNT2	7139	genome.wustl.edu	37	1	201328778	201328778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000364.2	-1	reviewed	p.R272Q	1.000	22	0%	12	50%	8	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
LMOD1	25802	genome.wustl.edu	37	1	201869441	201869441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012134.2	-1	reviewed	p.K234Q	0.000	82	0%	86	30.2%	2	0%	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_Tropomodulin
LMOD1	25802	genome.wustl.edu	37	1	201869780	201869780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012134.2	-1	reviewed	p.L121M	0.003	312	0%	345	38.3%	0	-	benign(0.421)	tolerated(0.1)	neutral(0.423)	HMMPfam_Tropomodulin
ARL8A	127829	genome.wustl.edu	37	1	202103613	202103613	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138795.2	-1	validated	p.S181	0.975	49	0%	54	24.1%	99	28.2%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
LGR6	59352	genome.wustl.edu	37	1	202166204	202166204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000420582	+1	known	p.T54P	0.000	51	0%	95	37.9%	0	-	unknown(0)	-	-	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202399936	202399936	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000466968	+1	known	p.E129*	1.000	170	0%	130	23.8%	0	-	benign(0.221)	tolerated(0.08)	neutral(0.322)	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202464536	202464536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032105.2	+1	reviewed	p.R754I	0.050	147	0%	167	10.8%	0	-	possibly_damaging(0.931)	deleterious(0.02)	deleterious(0.760)	NULL
SYT2	127833	genome.wustl.edu	37	1	202573673	202573673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136504.1	-1	validated	p.K85N	1.000	154	0%	202	15.3%	0	-	unknown(0)	tolerated(0.08)	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202705374	202705374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006618.3	-1	validated	p.F1077L	1.000	84	0%	117	29.9%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PLU-1
ENSG00000245250	0	genome.wustl.edu	37	1	202935141	202935141	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501099	+1	novel	NULL	0.000	25	0%	25	48%	0	-	-	-	-	-
CHI3L1	1116	genome.wustl.edu	37	1	203151968	203151968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001276.2	-1	reviewed	p.E160K	0.975	52	0%	47	36.2%	11	54.5%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
ATP2B4	493	genome.wustl.edu	37	1	203702353	203702353	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356729	+1	known	p.S69L	1.000	137	0%	166	25.3%	0	-	-	-	-	NULL
LAX1	54900	genome.wustl.edu	37	1	203743224	203743224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017773.3	+1	validated	p.E204D	0.005	106	0%	132	20.5%	0	-	probably_damaging(0.97)	tolerated(0.12)	deleterious(0.673)	NULL
KISS1	3814	genome.wustl.edu	37	1	204159612	204159612	+	Frame_Shift_Del	DEL	T	T	-	rs71745629		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002256.3	-1	validated	p.*139fs	0.001	-	-	-	-	-	-	-	-	-	NULL
PIK3C2B	5287	genome.wustl.edu	37	1	204403724	204403724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002646.3	-1	reviewed	p.F1177V	1.000	45	0%	53	32.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
NFASC	23114	genome.wustl.edu	37	1	204944398	204944398	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015090.3	+1	reviewed	e13-1	1.000	77	0%	114	28.1%	0	-	-	-	-	-
NFASC	23114	genome.wustl.edu	37	1	204949540	204949540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000367173	+1	known	p.E710*	0.483	20	0%	12	41.7%	1	0%	benign(0.12)	tolerated(0.15)	neutral(0.251)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSTYK	25778	genome.wustl.edu	37	1	205117438	205117438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015375.2	-1	reviewed	p.A833T	1.000	93	0%	99	33.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NUAK2	81788	genome.wustl.edu	37	1	205277832	205277832	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030952.1	-1	provisional	p.I127	0.777	31	0%	41	39%	16	37.5%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LEMD1	93273	genome.wustl.edu	37	1	205350932	205350932	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000367153	-1	known	p.E134*	0.000	306	0%	315	20.6%	33	39.3%	-	-	-	NULL
NUCKS1	64710	genome.wustl.edu	37	1	205688691	205688691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022731.3	-1	validated	p.E166*	1.000	150	0%	192	12.5%	42	9.5%	-	-	-	NULL
PM20D1	148811	genome.wustl.edu	37	1	205819127	205819127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152491.4	-1	validated	p.S25L	0.004	46	0%	61	23%	0	-	benign(0.062)	tolerated(0.31)	neutral(0.031)	NULL
AVPR1B	553	genome.wustl.edu	37	1	206225010	206225010	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000707.3	+1	reviewed	p.F190	1.000	61	0%	46	15.2%	2	50%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTSE	1510	genome.wustl.edu	37	1	206319112	206319112	+	Silent	SNP	C	C	T	rs150791070	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001910.2	+1	reviewed	p.F79	0.344	104	0%	97	40.2%	12	25%	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
IKBKE	9641	genome.wustl.edu	37	1	206650074	206650074	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014002.2	+1	validated	p.F198	0.994	33	0%	32	15.6%	4	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
RASSF5	83593	genome.wustl.edu	37	1	206758011	206758011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182663.2	+1	reviewed	p.G328E	1.000	97	0%	83	28.9%	5	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_RA,HMMSmart_SM00314
IL20	50604	genome.wustl.edu	37	1	207039325	207039325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018724.3	+1	reviewed	p.R43Q	0.001	162	0%	187	32.1%	0	-	benign(0.25)	tolerated(0.43)	neutral(0.039)	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
IL20	50604	genome.wustl.edu	37	1	207040770	207040770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018724.3	+1	reviewed	p.K140N	0.854	270	0%	304	12.8%	0	-	benign(0.026)	tolerated(0.47)	neutral(0.012)	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
PFKFB2	5208	genome.wustl.edu	37	1	207242833	207242833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006212.2	+1	reviewed	p.R351Q	1.000	115	0%	114	43%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
C4BPB	725	genome.wustl.edu	37	1	207262707	207262707	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017367.1	+1	reviewed	e0+1	0.000	22	0%	18	44.4%	0	-	-	-	-	-
C4BPA	722	genome.wustl.edu	37	1	207288841	207288841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000715.3	+1	reviewed	p.E137*	0.975	311	0%	282	36.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR2	1380	genome.wustl.edu	37	1	207640198	207640198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006658.2	+1	reviewed	p.S129Y	0.874	109	0%	156	26.3%	0	-	benign(0.42)	deleterious(0.03)	deleterious(0.500)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207643321	207643321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006658.2	+1	reviewed	p.D367Y	0.105	85	0%	150	24.7%	0	-	probably_damaging(0.961)	deleterious(0.05)	deleterious(0.750)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207700180	207700180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000651.4	+1	reviewed	p.F323L	0.669	346	0.3%	491	27.1%	0	-	benign(0.043)	tolerated(0.7)	neutral(0.005)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207739182	207739182	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000651.4	+1	reviewed	e24-1	0.068	180	0%	231	21.2%	0	-	-	-	-	-
CR1	1378	genome.wustl.edu	37	1	207780600	207780600	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000651.4	+1	reviewed	p.R1939*	0.771	190	0%	153	27.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HSD11B1	3290	genome.wustl.edu	37	1	209907747	209907747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005525.2	+1	reviewed	p.E254*	0.002	185	0%	149	23.5%	4	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
DIEXF	27042	genome.wustl.edu	37	1	210016941	210016941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014388.5	+1	validated	p.E643K	1.000	126	0%	157	25.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1253
KCNH1	3756	genome.wustl.edu	37	1	210857438	210857438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172362.2	-1	reviewed	p.E719*	1.000	80	0%	55	21.8%	0	-	-	-	-	NULL
INTS7	25896	genome.wustl.edu	37	1	212115237	212115237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015434.2	-1	provisional	p.R940C	1.000	126	0%	98	22.4%	35	8.5%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
INTS7	25896	genome.wustl.edu	37	1	212184729	212184729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015434.2	-1	provisional	p.E182*	1.000	56	0%	42	19%	4	0%	-	-	-	superfamily_ARM repeat
INTS7	25896	genome.wustl.edu	37	1	212193518	212193518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015434.2	-1	provisional	p.R106I	1.000	99	0%	75	36%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
DTL	51514	genome.wustl.edu	37	1	212276274	212276274	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016448.2	+1	validated	p.E729*	0.654	93	0%	114	30.7%	3	100%	-	-	-	NULL
PPP2R5A	5525	genome.wustl.edu	37	1	212502578	212502578	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006243.2	+1	reviewed	p.E95*	1.000	90	0%	78	15.4%	1	0%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
FAM71A	149647	genome.wustl.edu	37	1	212799096	212799096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153606.3	+1	validated	p.A293T	0.014	41	0%	34	14.7%	0	-	benign(0.024)	tolerated(1)	neutral(0.001)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213302954	213302954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012424.3	+1	validated	p.Q186P	0.921	358	0%	209	25.8%	0	-	probably_damaging(0.966)	tolerated(0.09)	deleterious(0.704)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213414388	213414388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012424.3	+1	validated	p.K523N	0.996	222	0%	227	25.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213445973	213445973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012424.3	+1	validated	p.R1066K	1.000	126	0%	171	26.3%	9	22.2%	benign(0.009)	tolerated(0.4)	neutral(0.017)	NULL
PROX1	5629	genome.wustl.edu	37	1	214170114	214170114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002763.3	+1	provisional	p.S79L	1.000	213	0%	230	31.7%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Prox1
CENPF	1063	genome.wustl.edu	37	1	214816168	214816168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016343.3	+1	reviewed	p.Y1496C	0.001	104	0%	101	12.9%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
KCTD3	51133	genome.wustl.edu	37	1	215751056	215751056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016121.3	+1	validated	p.G101R	1.000	118	0%	107	37.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
USH2A	7399	genome.wustl.edu	37	1	215844624	215844624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.R4608L	0.629	270	0%	226	11.9%	0	-	probably_damaging(0.983)	tolerated(0.12)	deleterious(0.690)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215853659	215853659	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.G4042	0.023	383	0%	413	20.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215853667	215853667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.R4040C	0.940	376	0%	397	33.8%	0	-	benign(0.339)	tolerated(0.08)	neutral(0.407)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216017732	216017732	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.S3054	0.873	246	0%	248	32.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216052295	216052295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.S2790Y	0.999	456	0%	332	26.8%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216062287	216062287	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.I2568M	1.000	252	0%	214	22.9%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216166443	216166443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.E2242K	0.993	490	0%	317	32.5%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216462633	216462633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206933.2	-1	reviewed	p.L654I	0.147	329	0%	391	32.7%	0	-	benign(0.144)	tolerated(0.4)	neutral(0.029)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
EPRS	2058	genome.wustl.edu	37	1	220156663	220156663	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004446.2	-1	reviewed	p.I1056	0.999	214	0%	135	16.3%	6	50%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
EPRS	2058	genome.wustl.edu	37	1	220170582	220170582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004446.2	-1	reviewed	p.D762Y	0.999	188	0%	125	28%	5	60%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_S15/NS1_bind
IARS2	55699	genome.wustl.edu	37	1	220269471	220269471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018060.3	+1	validated	p.S98*	1.000	72	0%	63	27%	0	-	-	-	-	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
IARS2	55699	genome.wustl.edu	37	1	220275521	220275521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018060.3	+1	validated	p.R201C	1.000	88	0%	98	36.7%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
MARK1	4139	genome.wustl.edu	37	1	220804392	220804392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018650.3	+1	validated	p.R309*	1.000	109	0%	122	22.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MIA3	375056	genome.wustl.edu	37	1	222801097	222801097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198551.2	+1	validated	p.P179S	0.002	125	0%	125	22.4%	1	0%	benign(0.109)	deleterious(0.04)	neutral(0.357)	NULL
AIDA	64853	genome.wustl.edu	37	1	222867591	222867591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022831.2	-1	validated	p.K65N	1.000	353	0.3%	356	17.4%	5	0%	benign(0.344)	deleterious(0)	deleterious(0.553)	HMMPfam_DUF1855,superfamily_Domain from hypothetical 2610208m17rik protein
TP53BP2	7159	genome.wustl.edu	37	1	223994597	223994597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031685.2	-1	reviewed	p.S142Y	1.000	193	0%	217	24.4%	2	50%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
FBXO28	23219	genome.wustl.edu	37	1	224340922	224340922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015176.2	+1	validated	p.E199*	1.000	212	0%	195	29.7%	2	0%	-	-	-	NULL
NVL	4931	genome.wustl.edu	37	1	224495747	224495747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002533.2	-1	validated	p.F187L	1.000	232	0%	236	12.7%	0	-	benign(0)	tolerated(1)	-	NULL
CNIH3	149111	genome.wustl.edu	37	1	224872541	224872541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152495.1	+1	provisional	p.R65Q	1.000	118	0%	118	17.8%	7	0%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Cornichon
MIXL1	83881	genome.wustl.edu	37	1	226413239	226413239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031944.1	+1	provisional	p.R142Q	0.990	162	0%	192	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
LIN9	286826	genome.wustl.edu	37	1	226474059	226474059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173083.2	-1	provisional	p.R183W	1.000	68	0%	107	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIRP
CDC42BPA	8476	genome.wustl.edu	37	1	227216924	227216924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003607.3	-1	reviewed	p.K1254T	1.000	95	0%	113	15.9%	2	0%	possibly_damaging(0.531)	deleterious(0)	deleterious(0.623)	HMMPfam_CNH,HMMSmart_CNH
CDC42BPA	8476	genome.wustl.edu	37	1	227223298	227223298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003607.3	-1	reviewed	p.F1035L	1.000	134	0%	91	20.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57889
CDC42BPA	8476	genome.wustl.edu	37	1	227316840	227316840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003607.3	-1	reviewed	p.E495K	1.000	92	0%	67	40.3%	0	-	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
ZNF678	339500	genome.wustl.edu	37	1	227842805	227842805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178549.3	+1	validated	p.R285I	0.992	306	0%	300	23%	0	-	benign(0.342)	tolerated(0.29)	neutral(0.137)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227842889	227842889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178549.3	+1	validated	p.R313I	0.789	314	0%	262	11.1%	0	-	benign(0.342)	tolerated(0.17)	neutral(0.167)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227843522	227843522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178549.3	+1	validated	p.S524N	0.090	142	0%	142	20.4%	1	0%	benign(0.008)	tolerated(0.51)	neutral(0.009)	NULL
PRSS38	339501	genome.wustl.edu	37	1	228004928	228004928	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183062.2	+1	validated	p.I110	0.000	55	0%	57	28.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
OBSCN	84033	genome.wustl.edu	37	1	228492186	228492186	+	Missense_Mutation	SNP	C	C	T	rs74142694	byCluster;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000366707	+1	known	p.R1419C	0.071	141	0%	159	24.5%	1	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228494709	228494709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098623.1	+1	reviewed	p.R4012C	1.000	11	0%	13	38.5%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TRIM11	81559	genome.wustl.edu	37	1	228584651	228584651	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145214.2	-1	reviewed	p.R286*	0.997	47	0%	64	26.6%	19	31.5%	-	-	-	HMMSmart_SM00589
NUP133	55746	genome.wustl.edu	37	1	229613384	229613384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018230.2	-1	reviewed	p.Y572	0.884	130	0%	82	26.8%	3	33.3%	-	-	-	HMMPfam_Nup133
GALNT2	2590	genome.wustl.edu	37	1	230410232	230410232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004481.3	+1	reviewed	p.D494E	0.990	82	0%	94	18.1%	53	43.3%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
COG2	22796	genome.wustl.edu	37	1	230810833	230810833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007357.2	+1	reviewed	p.S330L	0.833	305	0%	329	34%	2	0%	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	NULL
AGT	183	genome.wustl.edu	37	1	230841693	230841693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000029.3	-1	reviewed	p.K370N	0.530	164	0%	182	36.8%	32	34.3%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CAPN9	10753	genome.wustl.edu	37	1	230891101	230891101	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006615.2	+1	reviewed	p.E78*	0.982	87	0%	70	22.9%	0	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
TTC13	79573	genome.wustl.edu	37	1	231090102	231090102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024525.4	-1	validated	p.R164W	0.998	46	0%	58	27.6%	1	0%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMSmart_SM00028,superfamily_TPR-like
C1orf124	83932	genome.wustl.edu	37	1	231488782	231488782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032018.4	+1	validated	p.S382Y	0.079	138	0%	130	22.3%	1	0%	possibly_damaging(0.519)	deleterious(0.01)	deleterious(0.580)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488964	231488964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032018.4	+1	validated	p.N443H	0.000	143	0%	130	30%	6	66.6%	benign(0.132)	tolerated(0.15)	neutral(0.252)	NULL
DISC1	27185	genome.wustl.edu	37	1	231830106	231830106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018662.2	+1	reviewed	p.G201D	0.000	58	0%	79	35.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DISC1	27185	genome.wustl.edu	37	1	231931028	231931028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018662.2	+1	reviewed	p.E559*	1.000	19	0%	46	26.1%	0	-	-	-	-	superfamily_Prefoldin
SIPA1L2	57568	genome.wustl.edu	37	1	232650434	232650434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020808.3	-1	validated	p.E218*	1.000	411	0%	427	10.5%	0	-	-	-	-	NULL
NTPCR	84284	genome.wustl.edu	37	1	233105829	233105829	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032324.1	+1	provisional	p.E157*	1.000	110	0%	112	27.7%	56	3.5%	-	-	-	HMMSmart_SM00382,HMMPfam_DUF265,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC35F3	148641	genome.wustl.edu	37	1	234444923	234444923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173508.2	+1	provisional	p.L229I	1.000	127	0%	79	29.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF103481
TARBP1	6894	genome.wustl.edu	37	1	234563072	234563072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005646.3	-1	reviewed	p.V1105A	0.037	88	0%	58	34.5%	0	-	benign(0.001)	tolerated(0.89)	-	superfamily_ARM-type_fold
ARID4B	51742	genome.wustl.edu	37	1	235345059	235345059	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000474953	-1	known	p.S372*	0.558	173	0%	185	22.2%	2	0%	-	-	-	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345464	235345464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016374.5	-1	reviewed	p.R924*	1.000	379	0%	374	26.2%	1	0%	-	-	-	NULL
GNG4	2786	genome.wustl.edu	37	1	235715436	235715436	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098721.1	-1	validated	p.E67	1.000	367	0%	279	20.8%	0	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
LYST	1130	genome.wustl.edu	37	1	235916455	235916455	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.L2450R	1.000	284	0%	187	29.4%	0	-	probably_damaging(0.998)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235955093	235955093	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.C1483	0.000	251	0%	198	29.8%	0	-	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235955237	235955237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.K1435N	0.977	245	0%	229	35.8%	0	-	possibly_damaging(0.702)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235969320	235969320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.L1039S	0.000	342	0%	309	24.3%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
LYST	1130	genome.wustl.edu	37	1	235969378	235969378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.E1020*	0.311	329	0%	252	21.8%	0	-	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235969998	235969998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.R813Q	1.000	396	0%	289	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LYST	1130	genome.wustl.edu	37	1	235972815	235972815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.E435*	1.000	235	0%	219	20.1%	0	-	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235973331	235973331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000081.2	-1	reviewed	p.S263P	1.000	177	0%	143	23.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NID1	4811	genome.wustl.edu	37	1	236143944	236143944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002508.2	-1	reviewed	p.Y1079*	0.944	96	0%	114	13.2%	11	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NID1	4811	genome.wustl.edu	37	1	236195790	236195790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002508.2	-1	reviewed	p.S483Y	1.000	83	0%	111	35.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
HEATR1	55127	genome.wustl.edu	37	1	236736127	236736127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018072.4	-1	validated	p.I1154S	1.000	465	0%	415	22.4%	2	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236757370	236757370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018072.4	-1	validated	p.L379V	0.939	138	0%	150	32.7%	0	-	probably_damaging(0.981)	tolerated(0.07)	deleterious(0.744)	NULL
HEATR1	55127	genome.wustl.edu	37	1	236767298	236767298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018072.4	-1	validated	p.P33H	1.000	53	0%	71	12.7%	3	66.6%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
ACTN2	88	genome.wustl.edu	37	1	236918332	236918332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001103.2	+1	reviewed	p.S663I	1.000	157	0%	157	15.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
RYR2	6262	genome.wustl.edu	37	1	237754063	237754063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035.2	+1	reviewed	p.A1311T	0.991	348	0%	287	23.3%	0	-	possibly_damaging(0.836)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237778053	237778053	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035.2	+1	reviewed	p.L1875	0.004	160	0%	156	24.4%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237791126	237791126	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035.2	+1	reviewed	p.I2062	0.401	65	0%	53	41.5%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237813261	237813261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035.2	+1	reviewed	p.P2533S	0.999	196	0%	213	23%	0	-	benign(0.361)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237813372	237813372	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035.2	+1	reviewed	p.E2570*	1.000	209	0%	215	34%	0	-	-	-	-	NULL
RGS7	6000	genome.wustl.edu	37	1	240969482	240969482	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002924.4	-1	validated	p.Q409	1.000	117	0%	159	24.5%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RGS7	6000	genome.wustl.edu	37	1	240976985	240976985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002924.4	-1	validated	p.L297I	1.000	99	0%	91	12.1%	0	-	benign(0.038)	tolerated(0.53)	neutral(0.009)	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
FH	2271	genome.wustl.edu	37	1	241675287	241675287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000143.2	-1	reviewed	p.D179N	1.000	498	0%	437	10.3%	36	16.6%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
KMO	8564	genome.wustl.edu	37	1	241728344	241728344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003679.3	+1	validated	p.A225P	1.000	198	0%	125	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD(P)-binding domain
WDR64	128025	genome.wustl.edu	37	1	241953963	241953963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144625.4	+1	validated	p.D531N	0.832	462	0%	478	21.5%	0	-	probably_damaging(0.959)	tolerated(0.98)	neutral(0.403)	NULL
CEP170	9859	genome.wustl.edu	37	1	243328552	243328552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014812.2	-1	reviewed	p.L904I	1.000	294	0%	280	22.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CEP170	9859	genome.wustl.edu	37	1	243349493	243349493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000321628	-1	known	p.S415Y	1.000	128	0%	152	27%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243581364	243581364	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006642.2	+1	validated	p.I613	0.996	204	0%	185	31.9%	1	100%	-	-	-	NULL
AKT3	10000	genome.wustl.edu	37	1	243716094	243716094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005465.3	-1	reviewed	p.R367Q	1.000	231	0%	172	28.5%	0	-	possibly_damaging(0.876)	tolerated(0.57)	neutral(0.347)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C1orf100	200159	genome.wustl.edu	37	1	244541846	244541846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012970.1	+1	predicted	p.R77Q	0.002	91	0%	91	13.2%	0	-	benign(0.037)	tolerated(0.22)	neutral(0.044)	NULL
C1orf101	257044	genome.wustl.edu	37	1	244747200	244747200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130957.1	+1	validated	p.R682*	0.004	77	0%	73	31.5%	0	-	-	-	-	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245019767	245019767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031844.2	-1	reviewed	p.K635T	1.000	188	0%	211	10%	107	14.9%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HNRNPU	3192	genome.wustl.edu	37	1	245022653	245022653	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031844.2	-1	reviewed	p.R347	1.000	70	0%	72	20.8%	40	32.5%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
HNRNPU	3192	genome.wustl.edu	37	1	245023760	245023760	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031844.2	-1	reviewed	p.H298	1.000	81	0%	65	13.8%	20	15%	-	-	-	NULL
TFB2M	64216	genome.wustl.edu	37	1	246704484	246704484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022366.2	-1	validated	p.A347V	0.002	52	0%	48	31.2%	9	44.4%	possibly_damaging(0.898)	tolerated(0.12)	deleterious(0.615)	HMMPfam_RrnaAD,superfamily_SSF53335
CNST	163882	genome.wustl.edu	37	1	246810457	246810457	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152609.2	+1	validated	p.L318	0.125	249	0%	186	25.8%	3	0%	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247014690	247014690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015446.4	-1	validated	p.L1540I	0.355	98	1%	76	27.6%	0	-	probably_damaging(0.955)	tolerated(0.11)	deleterious(0.670)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247081635	247081635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015446.4	-1	validated	p.L13P	1.000	87	1.1%	88	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF695	57116	genome.wustl.edu	37	1	247151061	247151061	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020394.3	-1	validated	p.C252	0.000	184	0%	185	21.1%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF695	57116	genome.wustl.edu	37	1	247151529	247151529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020394.3	-1	validated	p.I96M	0.000	288	0%	258	34.5%	2	0%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
ZNF695	57116	genome.wustl.edu	37	1	247162740	247162740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020394.3	-1	validated	p.L57I	0.723	167	0%	192	32.3%	4	0%	benign(0.186)	tolerated(0.47)	neutral(0.029)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF124	7678	genome.wustl.edu	37	1	247320499	247320499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003431.2	-1	provisional	p.R80I	0.935	187	0%	173	18.5%	1	0%	possibly_damaging(0.752)	deleterious(0.03)	deleterious(0.641)	superfamily_C2H2 and C2HC zinc fingers
NLRP3	114548	genome.wustl.edu	37	1	247587612	247587612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079821.2	+1	reviewed	p.K289N	0.957	141	0%	129	21.7%	0	-	possibly_damaging(0.868)	tolerated(0.06)	deleterious(0.659)	HMMPfam_NACHT
OR2W5	441932	genome.wustl.edu	37	1	247655135	247655135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004698.2	+1	validated	p.E236*	0.902	174	0%	186	11.3%	0	-	-	-	-	HMMPfam_7tm_1
OR2C3	81472	genome.wustl.edu	37	1	247694974	247694974	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198074.4	-1	validated	p.T280	0.022	107	0%	135	11.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2G3	81469	genome.wustl.edu	37	1	247769295	247769295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001914.1	+1	provisional	p.M136I	0.984	491	0%	513	11.7%	0	-	benign(0.323)	tolerated(0.07)	neutral(0.420)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2G3	81469	genome.wustl.edu	37	1	247769473	247769473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001914.1	+1	provisional	p.E196*	0.399	235	0%	236	38.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1C1	26188	genome.wustl.edu	37	1	247921142	247921142	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012353.2	-1	validated	p.C189	0.950	125	0%	139	20.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L5	81466	genome.wustl.edu	37	1	248185996	248185996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000355281	+1	known	p.F249L	0.138	305	0%	302	29.8%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224045	248224045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004687.1	+1	provisional	p.R21I	0.185	966	0%	1076	19.7%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	superfamily_Family A G protein-coupled receptor-like
OR2L3	391192	genome.wustl.edu	37	1	248224664	248224664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004687.1	+1	provisional	p.M227I	0.002	351	0%	447	19.9%	0	-	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L3	391192	genome.wustl.edu	37	1	248224777	248224777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004687.1	+1	provisional	p.R265Q	0.003	267	0%	311	32.8%	0	-	benign(0.151)	deleterious(0.05)	neutral(0.359)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L3	391192	genome.wustl.edu	37	1	248224900	248224900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004687.1	+1	provisional	p.R306I	0.003	184	0%	193	29%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458370	248458370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004692.1	-1	provisional	p.E171K	0.002	89	0%	108	28.7%	0	-	possibly_damaging(0.872)	tolerated(0.28)	neutral(0.371)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512779	248512779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001918.1	+1	provisional	p.A235T	1.000	229	0%	143	23.8%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569781	248569781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030904.1	+1	provisional	p.F162L	0.000	285	0%	181	14.9%	0	-	probably_damaging(0.994)	tolerated(0.2)	deleterious(0.501)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248570338	248570338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030904.1	+1	provisional	p.T348N	0.003	356	0%	200	30.5%	0	-	benign(0.382)	tolerated(0.25)	neutral(0.159)	superfamily_SSF81321
OR2T2	401992	genome.wustl.edu	37	1	248616384	248616384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004136.1	+1	provisional	p.L96M	0.000	535	0%	444	18%	0	-	possibly_damaging(0.911)	tolerated(0.11)	deleterious(0.635)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2G6	391211	genome.wustl.edu	37	1	248685393	248685393	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013355.1	+1	validated	p.W149*	0.939	100	0%	131	10.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR14I1	401994	genome.wustl.edu	37	1	248844983	248844983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004734.1	-1	provisional	p.C208Y	0.096	161	0%	155	37.4%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMPfam_7tm_1,superfamily_SSF81321
ACP1	52	genome.wustl.edu	37	2	272202	272202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007099.3	+1	reviewed	p.D43G	1.000	35	0%	38	39.5%	22	68.1%	unknown(0)	tolerated(0.22)	-	HMMPfam_LMWPc,HMMSmart_SM00226,superfamily_Phosphotyrosine protein phosphatases I
SNTG2	54221	genome.wustl.edu	37	2	1161247	1161247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018968.3	+1	reviewed	p.R142I	1.000	231	0%	252	32.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SNTG2	54221	genome.wustl.edu	37	2	1251121	1251121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018968.3	+1	reviewed	p.N304I	0.766	110	0%	147	30.6%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
PXDN	7837	genome.wustl.edu	37	2	1680719	1680719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012293.1	-1	validated	p.E276D	1.000	16	0%	23	26.1%	4	0%	benign(0.422)	tolerated(0.08)	neutral(0.437)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RNASEH1	246243	genome.wustl.edu	37	2	3593443	3593443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002936.3	-1	validated	p.S265A	0.956	189	0%	197	30.5%	28	46.4%	benign(0.006)	tolerated(1)	-	HMMPfam_RnaseH,superfamily_Ribonuclease H-like
KIDINS220	57498	genome.wustl.edu	37	2	8931200	8931200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020738.2	-1	validated	p.K477N	1.000	481	0%	234	22.2%	0	-	benign(0.307)	tolerated(0.48)	neutral(0.106)	HMMPfam_KAP_NTPase
ASAP2	8853	genome.wustl.edu	37	2	9484907	9484907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003887.2	+1	reviewed	p.F334C	1.000	84	0%	94	28.7%	6	66.6%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
IAH1	285148	genome.wustl.edu	37	2	9624570	9624570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039613.1	+1	provisional	p.L152R	0.965	98	0%	91	19.8%	139	50.3%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
ADAM17	6868	genome.wustl.edu	37	2	9642317	9642317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003183.4	-1	reviewed	p.V545M	1.000	523	0%	544	21.5%	16	12.5%	benign(0.051)	deleterious(0.04)	neutral(0.352)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
ADAM17	6868	genome.wustl.edu	37	2	9658087	9658087	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003183.4	-1	reviewed	p.I378	1.000	277	0%	240	27.5%	1	0%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TAF1B	9014	genome.wustl.edu	37	2	10074044	10074044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005680.2	+1	reviewed	p.K566N	1.000	90	0%	114	29.8%	0	-	possibly_damaging(0.923)	tolerated(0.09)	deleterious(0.669)	NULL
RRM2	6241	genome.wustl.edu	37	2	10269068	10269068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034.3	+1	reviewed	p.R298W	0.880	101	0%	117	29.9%	11	45.4%	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin/RR_like
NOL10	79954	genome.wustl.edu	37	2	10712202	10712202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024894.2	-1	validated	p.H688N	1.000	366	0%	372	34.7%	16	75%	possibly_damaging(0.462)	deleterious(0.03)	deleterious(0.516)	NULL
PDIA6	10130	genome.wustl.edu	37	2	10928877	10928877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005742.2	-1	validated	p.S315Y	1.000	413	0%	549	26.4%	177	45.7%	possibly_damaging(0.776)	deleterious(0.02)	deleterious(0.672)	superfamily_Thioredoxin-like
ROCK2	9475	genome.wustl.edu	37	2	11341489	11341489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004850.3	-1	reviewed	p.K890N	1.000	138	0%	137	29.9%	2	0%	possibly_damaging(0.855)	deleterious(0.03)	deleterious(0.695)	NULL
ROCK2	9475	genome.wustl.edu	37	2	11427861	11427861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004850.3	-1	reviewed	p.D48G	1.000	130	0%	74	33.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GREB1	9687	genome.wustl.edu	37	2	11780484	11780484	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014668.3	+1	reviewed	p.L1918	1.000	50	0%	63	23.8%	22	45.4%	-	-	-	NULL
FAM49A	81553	genome.wustl.edu	37	2	16742478	16742478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030797.3	-1	validated	p.T194M	0.999	238	0%	205	26.8%	0	-	possibly_damaging(0.651)	deleterious(0.02)	deleterious(0.612)	HMMPfam_DUF1394
FAM49A	81553	genome.wustl.edu	37	2	16745332	16745332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030797.3	-1	validated	p.Q75K	1.000	107	0%	99	23.2%	1	0%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMPfam_DUF1394
RAD51AP2	729475	genome.wustl.edu	37	2	17696637	17696637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099218.2	-1	provisional	p.D1016Y	0.013	267	0%	146	28.8%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17696898	17696898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099218.2	-1	provisional	p.H929N	0.016	215	0%	106	40.6%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698843	17698843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099218.2	-1	provisional	p.K280N	0.897	201	0%	132	34.8%	0	-	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	NULL
WDR35	57539	genome.wustl.edu	37	2	20178610	20178610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006657.1	-1	reviewed	p.R113Q	1.000	213	0%	244	29.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
APOB	338	genome.wustl.edu	37	2	21224756	21224756	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.F4513C	0.811	195	0%	104	34.6%	0	-	possibly_damaging(0.741)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21225596	21225596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.S4233L	0.000	153	0%	113	19.5%	0	-	benign(0.014)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21228965	21228965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.S3592F	0.238	135	0%	84	25%	0	-	probably_damaging(0.991)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21229717	21229717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.F3341L	1.000	306	0%	225	33.8%	0	-	probably_damaging(0.998)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21229988	21229988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.Y3251C	1.000	141	0%	111	27.9%	0	-	probably_damaging(0.998)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21231230	21231230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.T2837M	0.001	489	0%	383	13.8%	0	-	benign(0.313)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21234034	21234034	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.P1902	0.006	373	0.5%	383	28.2%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21234577	21234577	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.V1721	0.000	552	0%	543	22.7%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21235442	21235442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000384.2	-1	reviewed	p.S1433L	0.972	252	0%	191	32.5%	0	-	probably_damaging(0.99)	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	23980358	23980358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017552.1	-1	validated	p.E1336D	0.622	586	0%	411	28.2%	1	100%	benign(0.007)	tolerated(0.38)	neutral(0.018)	NULL
C2orf44	80304	genome.wustl.edu	37	2	24253986	24253986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142319.1	-1	validated	p.R622H	0.000	89	0%	114	20.2%	0	-	unknown(0)	-	-	NULL
C2orf44	80304	genome.wustl.edu	37	2	24261749	24261749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025203.2	-1	validated	p.V206I	0.028	113	0%	130	13.8%	0	-	possibly_damaging(0.48)	tolerated(1)	neutral(0.159)	NULL
NCOA1	8648	genome.wustl.edu	37	2	24888780	24888780	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003743.4	+1	reviewed	p.E84	1.000	200	0%	166	26.5%	0	-	-	-	-	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
DTNB	1838	genome.wustl.edu	37	2	25799719	25799719	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021907.3	-1	reviewed	p.E288	1.000	25	0%	28	53.6%	13	23%	-	-	-	NULL
DTNB	1838	genome.wustl.edu	37	2	25819072	25819072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021907.3	-1	reviewed	p.M162I	1.000	114	0%	63	28.6%	7	14.2%	benign(0.23)	deleterious(0.01)	neutral(0.429)	HMMPfam_efhand_2,superfamily_EF-hand
ASXL2	55252	genome.wustl.edu	37	2	25978930	25978930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018263.4	-1	validated	p.F331L	1.000	200	0%	239	20.5%	0	-	unknown(0)	deleterious(0)	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	26068393	26068393	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018263.4	-1	validated	p.E33*	1.000	53	0%	40	32.5%	0	-	-	-	-	NULL
KIF3C	3797	genome.wustl.edu	37	2	26204243	26204243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002254.6	-1	validated	p.S182P	1.000	98	0%	102	22.5%	0	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC391359	391359	genome.wustl.edu	37	2	26363996	26363996	+	Silent	SNP	C	C	T	rs191916313	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001721740.1	-1	model	p.T46	0.025	52	0%	74	16.2%	0	-	-	-	-	HMMPfam_PMP22_Claudin
CCDC164	92749	genome.wustl.edu	37	2	26644155	26644155	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145038.2	+1	validated	e3-1	1.000	74	0%	76	25%	0	-	-	-	-	-
CCDC164	92749	genome.wustl.edu	37	2	26676368	26676368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145038.2	+1	validated	p.D624Y	0.952	40	0%	37	13.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KHK	3795	genome.wustl.edu	37	2	27322561	27322561	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000221.2	+1	reviewed	p.F280	0.965	19	0%	24	41.7%	2	50%	-	-	-	HMMPfam_PfkB,superfamily_Ribokinase-like
CAD	790	genome.wustl.edu	37	2	27447335	27447335	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004341.3	+1	reviewed	p.E411*	1.000	83	0%	113	28.3%	0	-	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
CAD	790	genome.wustl.edu	37	2	27457442	27457442	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004341.3	+1	reviewed	p.F1225	0.999	114	0%	117	38.5%	6	0%	-	-	-	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27465748	27465748	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000428460	+1	known	p.S197L	0.999	48	0%	45	26.7%	103	21.3%	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace
EIF2B4	8890	genome.wustl.edu	37	2	27587628	27587628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172195.3	-1	reviewed	p.F463L	1.000	106	0%	136	22.1%	176	46%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like
NRBP1	29959	genome.wustl.edu	37	2	27664438	27664438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013392.2	+1	validated	p.E484D	1.000	265	0%	373	11.8%	167	22.7%	benign(0.001)	tolerated(1)	-	NULL
IFT172	26160	genome.wustl.edu	37	2	27683889	27683889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015662.1	-1	validated	p.F838L	1.000	209	0%	204	19.6%	2	0%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	superfamily_TPR-like
GCKR	2646	genome.wustl.edu	37	2	27730613	27730613	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000411584	+1	known	p.S104L	0.126	53	0%	71	38%	0	-	-	-	-	superfamily_SIS domain
C2orf16	84226	genome.wustl.edu	37	2	27803661	27803661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032266.3	+1	validated	p.D1408Y	0.171	162	0%	144	17.4%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27803909	27803909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032266.3	+1	validated	p.F1490L	0.000	238	0%	220	29.1%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27804106	27804106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032266.3	+1	validated	p.R1556I	0.007	275	0%	295	28.1%	1	100%	unknown(0)	deleterious(0)	-	NULL
GPN1	11321	genome.wustl.edu	37	2	27861838	27861838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007266.3	+1	reviewed	p.Y233*	0.927	154	0%	153	34.6%	8	0%	-	-	-	HMMPfam_ATP_bind_1
SLC4A1AP	22950	genome.wustl.edu	37	2	27887982	27887982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018158.2	+1	validated	p.R281*	0.999	278	0%	208	26%	15	0%	-	-	-	superfamily_SMAD_FHA
SLC4A1AP	22950	genome.wustl.edu	37	2	27898421	27898421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018158.2	+1	validated	p.K456N	1.000	164	0%	185	29.7%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLC4A1AP	22950	genome.wustl.edu	37	2	27907903	27907903	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018158.2	+1	validated	e10-1	1.000	209	0%	209	23.4%	0	-	-	-	-	-
BRE	9577	genome.wustl.edu	37	2	28210873	28210873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004899.3	+1	validated	p.F73L	1.000	777	0%	707	30.3%	8	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_BRE
BRE	9577	genome.wustl.edu	37	2	28464260	28464260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004899.3	+1	validated	p.T284I	1.000	111	0%	85	28.2%	36	41.6%	benign(0.075)	tolerated(0.21)	neutral(0.049)	HMMPfam_BRE
PLB1	151056	genome.wustl.edu	37	2	28808689	28808689	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153021.4	+1	validated	p.E599*	0.000	101	0%	64	15.6%	1	0%	-	-	-	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
FAM179A	165186	genome.wustl.edu	37	2	29245093	29245093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199280.2	+1	validated	p.R477I	0.005	118	0%	105	28.6%	0	-	possibly_damaging(0.464)	tolerated(0.42)	neutral(0.167)	superfamily_ARM repeat
CLIP4	79745	genome.wustl.edu	37	2	29379237	29379237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024692.4	+1	validated	p.K395Q	0.999	211	0%	107	41.1%	0	-	possibly_damaging(0.816)	tolerated(0.08)	deleterious(0.609)	NULL
ALK	238	genome.wustl.edu	37	2	29473997	29473997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004304.3	-1	reviewed	p.W726C	1.000	35	0%	31	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000207187	0	genome.wustl.edu	37	2	30410405	30410405	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384458	+1	novel	NULL	1.000	28	0%	36	22.2%	0	-	-	-	-	-
LCLAT1	253558	genome.wustl.edu	37	2	30785079	30785079	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182551.3	+1	validated	p.F182	1.000	240	0%	209	23%	1	100%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
BIRC6	57448	genome.wustl.edu	37	2	32626420	32626420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.K408N	1.000	404	0%	342	30.4%	0	-	probably_damaging(0.978)	tolerated(0.26)	neutral(0.455)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32640323	32640323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.K655T	1.000	145	0%	145	20%	1	100%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32656134	32656134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.R1075Q	0.982	54	0%	74	14.9%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32658722	32658722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.D1087N	1.000	61	0%	49	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32667430	32667430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.R1382Q	1.000	66	0%	47	46.8%	0	-	benign(0.068)	tolerated(0.62)	neutral(0.009)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32735649	32735649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.I3432L	0.979	400	0%	340	23.5%	0	-	benign(0.011)	tolerated(0.22)	neutral(0.043)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32768509	32768509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016252.3	+1	reviewed	p.L4165I	1.000	384	0.3%	395	21.8%	5	20%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
CRIM1	51232	genome.wustl.edu	37	2	36726408	36726408	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016441.1	+1	provisional	p.S473	0.957	375	0%	348	25.6%	10	40%	-	-	-	HMMPfam_Antistasin
HEATR5B	54497	genome.wustl.edu	37	2	37235808	37235808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019024.1	-1	validated	p.D1490Y	1.000	137	0%	128	30.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CEBPZ	10153	genome.wustl.edu	37	2	37438169	37438169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005760.2	-1	validated	p.D953Y	0.906	134	0%	135	24.4%	11	18.1%	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	NULL
PRKD3	23683	genome.wustl.edu	37	2	37494641	37494641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005813.3	-1	reviewed	p.V606L	1.000	260	0%	261	25.3%	1	0%	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKD3	23683	genome.wustl.edu	37	2	37499573	37499573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005813.3	-1	reviewed	p.D552Y	1.000	89	0%	45	26.7%	4	0%	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	NULL
PRKD3	23683	genome.wustl.edu	37	2	37518090	37518090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005813.3	-1	reviewed	p.H160Q	1.000	155	0%	138	30.4%	2	100%	possibly_damaging(0.949)	deleterious(0.04)	deleterious(0.742)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
CDC42EP3	10602	genome.wustl.edu	37	2	37873326	37873326	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006449.3	-1	reviewed	p.F135	0.146	104	0%	81	30.9%	6	16.6%	-	-	-	NULL
CDKL4	344387	genome.wustl.edu	37	2	39440540	39440540	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009565.1	-1	provisional	e3+1	0.999	121	0%	131	28.2%	0	-	-	-	-	-
MAP4K3	8491	genome.wustl.edu	37	2	39487798	39487798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003618.2	-1	reviewed	p.R753*	1.000	67	0%	44	34.1%	4	0%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
THUMPD2	80745	genome.wustl.edu	37	2	39997096	39997096	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025264.4	-1	validated	p.I112	0.001	143	0%	86	26.7%	0	-	-	-	-	NULL
EML4	27436	genome.wustl.edu	37	2	42543130	42543130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019063.3	+1	validated	p.D666Y	1.000	97	0%	100	16%	10	60%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00320,superfamily_WD40 repeat-like
THADA	63892	genome.wustl.edu	37	2	43458127	43458127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083953.1	-1	validated	p.S1941L	0.000	52	0%	64	26.6%	50	34%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43927114	43927114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172069.3	+1	validated	p.E339D	0.994	109	0%	132	13.6%	0	-	possibly_damaging(0.945)	tolerated(0.4)	neutral(0.406)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43969927	43969927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172069.3	+1	validated	p.R1090I	1.000	119	0%	95	29.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_MyTH4,HMMSmart_SM00139
ABCG5	64240	genome.wustl.edu	37	2	44051398	44051398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022436.2	-1	reviewed	p.D360Y	1.000	179	0%	139	32.4%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LRPPRC	10128	genome.wustl.edu	37	2	44170950	44170950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133259.3	-1	reviewed	p.N794H	1.000	218	0%	147	36.1%	17	35.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_SSF48452
LRPPRC	10128	genome.wustl.edu	37	2	44201430	44201430	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133259.3	-1	reviewed	p.A338	0.973	130	0%	88	23.9%	4	0%	-	-	-	superfamily_SSF48452
LRPPRC	10128	genome.wustl.edu	37	2	44204348	44204348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133259.3	-1	reviewed	p.F179L	0.997	115	0%	73	17.8%	3	100%	benign(0.052)	deleterious(0)	neutral(0.448)	HMMPfam_PPR,superfamily_SSF48452
SLC3A1	6519	genome.wustl.edu	37	2	44513288	44513288	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000341.3	+1	reviewed	p.E295*	1.000	162	0%	155	27.1%	0	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
RHOQ	23433	genome.wustl.edu	37	2	46803328	46803328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012249.3	+1	validated	p.E102K	1.000	265	0%	196	27%	3	66.6%	benign(0.015)	tolerated(1)	neutral(0.001)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
PIGF	5281	genome.wustl.edu	37	2	46840890	46840890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002643.3	-1	reviewed	p.L88R	1.000	29	0%	29	13.8%	12	8.3%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_PIG-F
SOCS5	9655	genome.wustl.edu	37	2	46986094	46986094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014011.4	+1	reviewed	p.F142C	0.684	171	0%	136	26.5%	2	50%	benign(0.11)	tolerated(0.17)	neutral(0.068)	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014011.4	+1	reviewed	p.R429Q	1.000	204	0%	225	29.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
MSH2	4436	genome.wustl.edu	37	2	47690275	47690275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000251.1	+1	reviewed	p.S498R	0.669	144	0%	133	32.3%	2	0%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH2	4436	genome.wustl.edu	37	2	47698123	47698123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000251.1	+1	reviewed	p.E561*	1.000	118	0%	107	25.2%	0	-	-	-	-	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH6	2956	genome.wustl.edu	37	2	48027958	48027958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000179.2	+1	reviewed	p.E946*	0.988	275	0%	290	27.9%	5	0%	-	-	-	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_IV
FBXO11	80204	genome.wustl.edu	37	2	48035337	48035337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025133.3	-1	reviewed	p.A818S	1.000	440	0%	327	24.2%	22	40.9%	benign(0.136)	tolerated(0.15)	neutral(0.253)	HMMPfam_zf-UBR
FBXO11	80204	genome.wustl.edu	37	2	48036770	48036770	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025133.3	-1	reviewed	p.F721L	1.000	246	0%	194	29.4%	2	0%	possibly_damaging(0.737)	tolerated(0.62)	neutral(0.274)	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383
PPP1R21	129285	genome.wustl.edu	37	2	48725735	48725735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135629.1	+1	validated	p.R599Q	0.983	111	0%	105	32.4%	10	20%	possibly_damaging(0.837)	tolerated(0.06)	deleterious(0.642)	HMMPfam_TTKRSYEDQ
PPP1R21	129285	genome.wustl.edu	37	2	48738580	48738580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135629.1	+1	validated	p.E762D	1.000	341	0%	341	24%	8	25%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_TTKRSYEDQ
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48808302	48808302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172311.1	+1	reviewed	p.R177Q	0.027	108	0%	157	28.7%	0	-	possibly_damaging(0.563)	tolerated(0.59)	neutral(0.197)	NULL
GTF2A1L	11036	genome.wustl.edu	37	2	48848455	48848455	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000437125	+1	known	p.Y91*	0.000	112	0%	113	22.1%	0	-	-	-	-	HMMPfam_TFIIA
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48897084	48897084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172311.1	+1	reviewed	p.S1105I	1.000	198	0%	218	24.3%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_TFIIA
LHCGR	3973	genome.wustl.edu	37	2	48915211	48915211	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000233.3	-1	reviewed	p.I575	1.000	479	0.2%	360	22.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NRXN1	9378	genome.wustl.edu	37	2	50149200	50149200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135659.1	-1	reviewed	p.R1509Q	1.000	225	0%	158	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_4.1m
NRXN1	9378	genome.wustl.edu	37	2	50280600	50280600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135659.1	-1	reviewed	p.E1353K	1.000	100	0%	111	41.4%	0	-	benign(0.07)	tolerated(0.05)	neutral(0.350)	NULL
NRXN1	9378	genome.wustl.edu	37	2	50464081	50464081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135659.1	-1	reviewed	p.G1171V	1.000	216	0%	181	19.9%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	superfamily_ConA_like_lec_gl
NRXN1	9378	genome.wustl.edu	37	2	50850606	50850606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135659.1	-1	reviewed	p.S360L	1.000	271	0%	263	20.9%	0	-	benign(0.268)	deleterious(0.02)	neutral(0.412)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
GPR75	10936	genome.wustl.edu	37	2	54081673	54081673	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006794.2	-1	validated	p.K74T	1.000	83	0%	120	33.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PSME4	23198	genome.wustl.edu	37	2	54114425	54114425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014614.2	-1	validated	p.R1567Q	1.000	248	0%	260	26.5%	14	35.7%	possibly_damaging(0.904)	tolerated(0.21)	neutral(0.402)	superfamily_ARM repeat
PSME4	23198	genome.wustl.edu	37	2	54115124	54115124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014614.2	-1	validated	p.R1464Q	1.000	287	0%	249	20.5%	24	20.8%	probably_damaging(0.982)	tolerated(0.1)	deleterious(0.713)	superfamily_ARM repeat
PSME4	23198	genome.wustl.edu	37	2	54119980	54119980	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014614.2	-1	validated	p.L1386	0.211	298	0%	217	28.6%	6	66.6%	-	-	-	superfamily_ARM repeat
PSME4	23198	genome.wustl.edu	37	2	54150513	54150513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014614.2	-1	validated	p.F618C	1.000	65	0%	60	23.3%	0	-	unknown(0)	-	-	NULL
TSPYL6	388951	genome.wustl.edu	37	2	54482401	54482401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003937.2	-1	validated	p.F296L	0.984	206	0%	209	26.3%	0	-	probably_damaging(0.987)	tolerated(0.53)	neutral(0.444)	HMMPfam_NAP
SPTBN1	6711	genome.wustl.edu	37	2	54849587	54849587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003128.2	+1	reviewed	p.A343T	1.000	280	0.4%	243	22.6%	1	0%	benign(0.057)	tolerated(0.12)	neutral(0.264)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54871685	54871685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003128.2	+1	reviewed	p.D1411Y	1.000	200	0%	178	30.3%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54893178	54893178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003128.2	+1	reviewed	p.C2262	0.993	278	0%	248	21%	91	16.4%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RTN4	57142	genome.wustl.edu	37	2	55252930	55252930	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020532.4	-1	reviewed	p.E769*	0.933	203	0%	229	32.3%	0	-	-	-	-	NULL
RTN4	57142	genome.wustl.edu	37	2	55253156	55253156	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020532.4	-1	reviewed	p.P693	1.000	256	0%	296	23.6%	0	-	-	-	-	NULL
RTN4	57142	genome.wustl.edu	37	2	55254283	55254283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020532.4	-1	reviewed	p.N318H	0.000	143	0%	138	26.8%	0	-	possibly_damaging(0.677)	tolerated(0.25)	neutral(0.278)	NULL
C2orf63	130162	genome.wustl.edu	37	2	55436830	55436830	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152385.2	-1	validated	p.E213*	0.995	314	0%	314	23.2%	1	0%	-	-	-	NULL
C2orf63	130162	genome.wustl.edu	37	2	55436916	55436916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152385.2	-1	validated	p.K184T	0.017	188	0%	174	33.3%	0	-	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55518869	55518869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.S1864Y	1.000	79	0%	68	25%	6	0%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55522978	55522978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.S1768Y	1.000	161	0%	139	34.5%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55528365	55528365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.S1573Y	1.000	76	0%	60	31.7%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55544424	55544424	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.E1221*	1.000	141	0%	103	26.2%	0	-	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55555447	55555447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.R993C	1.000	45	0%	41	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55571543	55571543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.E383D	1.000	141	0%	83	37.3%	0	-	possibly_damaging(0.515)	deleterious(0.04)	deleterious(0.522)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55573406	55573406	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135597.1	-1	validated	p.R316*	0.999	297	0%	202	28.7%	0	-	-	-	-	NULL
PNPT1	87178	genome.wustl.edu	37	2	55863478	55863478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033109.3	-1	validated	p.R749Q	1.000	40	0%	45	11.1%	29	51.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nucleic_acid_OB,HMMSmart_S1
PNPT1	87178	genome.wustl.edu	37	2	55871819	55871819	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033109.3	-1	validated	p.F620C	1.000	136	0%	158	19.6%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
BCL11A	53335	genome.wustl.edu	37	2	60689482	60689482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022893.3	-1	reviewed	p.A189T	1.000	34	0%	74	20.3%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PAPOLG	64895	genome.wustl.edu	37	2	61009111	61009111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022894.2	+1	reviewed	p.R333Q	1.000	259	0%	308	33.8%	4	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_PAP_central,superfamily_PAP/OAS1 substrate-binding domain
PAPOLG	64895	genome.wustl.edu	37	2	61021867	61021867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022894.2	+1	reviewed	p.F671S	0.996	255	0%	269	26.8%	1	100%	benign(0.002)	tolerated(0.42)	neutral(0.014)	NULL
REL	5966	genome.wustl.edu	37	2	61147190	61147190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002908.2	+1	validated	p.K290E	1.000	305	0%	325	31.1%	0	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	superfamily_Ig_E-set
PUS10	150962	genome.wustl.edu	37	2	61235925	61235925	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144709.2	-1	validated	p.E118*	0.963	88	0%	114	36.8%	0	-	-	-	-	NULL
PEX13	5194	genome.wustl.edu	37	2	61258957	61258957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002618.3	+1	reviewed	p.N166H	1.000	259	0%	263	30.4%	3	66.6%	possibly_damaging(0.945)	deleterious(0.05)	deleterious(0.735)	HMMPfam_Peroxin-13_N
USP34	9736	genome.wustl.edu	37	2	61441705	61441705	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000411912	-1	known	p.T484A	0.521	166	0%	153	20.3%	9	11.1%	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61468760	61468760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014709.3	-1	validated	p.R2238C	1.000	89	0%	95	13.7%	3	33.3%	probably_damaging(1)	-	-	superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61575116	61575116	+	Missense_Mutation	SNP	C	C	T	rs142392366	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014709.3	-1	validated	p.R725Q	0.925	276	0%	297	29.6%	0	-	benign(0.048)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61575591	61575591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014709.3	-1	validated	p.E567K	1.000	201	0%	247	27.5%	0	-	possibly_damaging(0.945)	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003400.3	-1	reviewed	p.E571K	1.000	89	0%	109	23.9%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
FAM161A	84140	genome.wustl.edu	37	2	62053727	62053727	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032180.2	-1	validated	p.E616*	1.000	35	0%	36	19.4%	0	-	-	-	-	NULL
LOC100129162	100129162	genome.wustl.edu	37	2	62780138	62780138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001725437.1	-1	model	p.R178*	0.405	31	0%	18	22.2%	0	-	-	-	-	NULL
EHBP1	23301	genome.wustl.edu	37	2	63085621	63085621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015252.3	+1	reviewed	p.A239T	1.000	150	0%	100	31%	0	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63169980	63169980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015252.3	+1	reviewed	p.R473I	1.000	225	0%	140	22.9%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
OTX1	5013	genome.wustl.edu	37	2	63283372	63283372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014562.2	+1	reviewed	p.S329F	0.991	61	0%	61	29.5%	3	0%	unknown(0)	deleterious(0.01)	-	NULL
PELI1	57162	genome.wustl.edu	37	2	64335420	64335420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020651.3	-1	validated	p.H9N	1.000	362	0%	294	29.6%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Pellino
AFTPH	54812	genome.wustl.edu	37	2	64779768	64779768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203437.2	+1	validated	p.S387I	0.006	262	0%	203	27.6%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
AFTPH	54812	genome.wustl.edu	37	2	64780403	64780403	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203437.2	+1	validated	p.R599*	1.000	163	0%	147	30.6%	3	0%	-	-	-	NULL
AFTPH	54812	genome.wustl.edu	37	2	64794823	64794823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203437.2	+1	validated	p.T688M	0.954	463	0%	381	20.2%	10	10%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
CEP68	23177	genome.wustl.edu	37	2	65299676	65299676	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015147.2	+1	validated	p.Y482*	0.886	116	0%	97	20.6%	11	18.1%	-	-	-	NULL
SPRED2	200734	genome.wustl.edu	37	2	65559132	65559132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181784.2	-1	validated	p.D143Y	1.000	106	0%	88	18.2%	11	9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CNRIP1	25927	genome.wustl.edu	37	2	68521063	68521063	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015463.2	-1	reviewed	p.V142	1.000	71	0%	96	33.3%	0	-	-	-	-	NULL
PROKR1	10887	genome.wustl.edu	37	2	68882679	68882679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138964.2	+1	validated	p.E385K	0.998	86	0%	70	18.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ARHGAP25	9938	genome.wustl.edu	37	2	69040444	69040444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007231.2	+1	validated	p.S233A	1.000	310	0%	251	30.3%	3	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
AAK1	22848	genome.wustl.edu	37	2	69706131	69706131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014911.3	-1	reviewed	p.L878I	1.000	150	0%	133	22.6%	0	-	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	NULL
GMCL1	64395	genome.wustl.edu	37	2	70106106	70106106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178439.3	+1	provisional	p.F506L	1.000	499	0%	428	22.7%	2	50%	possibly_damaging(0.564)	tolerated(0.11)	neutral(0.464)	NULL
CD207	50489	genome.wustl.edu	37	2	71060880	71060880	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015717.2	-1	validated	p.I154	0.033	108	0%	87	23%	0	-	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71791310	71791310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130987.1	+1	reviewed	p.K844N	1.000	89	0%	78	20.5%	1	0%	possibly_damaging(0.512)	deleterious(0.01)	deleterious(0.578)	HMMPfam_FerB
SMYD5	10322	genome.wustl.edu	37	2	73452927	73452927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006062.2	+1	validated	p.E370D	1.000	295	0%	351	31.6%	9	0%	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	superfamily_SSF82199
ALMS1	7840	genome.wustl.edu	37	2	73717218	73717218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015120.4	+1	reviewed	p.F2710C	0.996	754	0%	568	23.1%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73717535	73717535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015120.4	+1	reviewed	p.F2816V	1.000	377	0%	295	48.1%	0	-	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73800287	73800287	+	Silent	SNP	C	C	T	rs183916999	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015120.4	+1	reviewed	p.V3760	0.002	392	0.3%	289	28.4%	12	8.3%	-	-	-	NULL
C2orf78	388960	genome.wustl.edu	37	2	74042602	74042602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080474.1	+1	predicted	p.L418I	0.000	121	0%	77	19.5%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
MOB1A	55233	genome.wustl.edu	37	2	74392328	74392328	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000409969	-1	known	p.S142	0.003	21	0%	24	45.8%	0	-	-	-	-	HMMPfam_Mob1_phocein
MTHFD2	10797	genome.wustl.edu	37	2	74438944	74438944	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006636.3	+1	reviewed	p.H280	0.018	121	0%	112	29.5%	55	34.5%	-	-	-	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd
PCGF1	84759	genome.wustl.edu	37	2	74732873	74732873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032673.2	-1	validated	p.S185R	0.241	178	0%	196	28.1%	18	27.7%	benign(0.031)	tolerated(0.52)	neutral(0.010)	NULL
C2orf65	130951	genome.wustl.edu	37	2	74802695	74802695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138804.3	-1	predicted	p.S315Y	1.000	267	0%	309	24.9%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
C2orf65	130951	genome.wustl.edu	37	2	74808867	74808867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138804.3	-1	predicted	p.E235*	1.000	439	0%	393	29.5%	1	0%	-	-	-	NULL
LRRTM4	80059	genome.wustl.edu	37	2	77745886	77745886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134745.1	-1	validated	p.R370I	0.782	75	0%	76	42.1%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
LRRTM4	80059	genome.wustl.edu	37	2	77746271	77746271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134745.1	-1	validated	p.R242C	1.000	71	0%	77	29.9%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00369,superfamily_L domain-like
REG3G	130120	genome.wustl.edu	37	2	79253927	79253927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008387.1	+1	validated	p.F55L	0.114	100	0%	111	25.2%	0	-	benign(0.339)	tolerated(0.15)	neutral(0.348)	HMMSmart_SM00034,superfamily_C-type lectin-like
CTNNA2	1496	genome.wustl.edu	37	2	80874951	80874951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004389.3	+1	validated	p.S891L	0.998	668	0%	519	29.9%	3	100%	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
SUCLG1	8802	genome.wustl.edu	37	2	84658736	84658736	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003849.3	-1	reviewed	p.E241*	1.000	276	0%	191	30.9%	29	0%	-	-	-	HMMPfam_Ligase_CoA,superfamily_CoA_ligase
GGCX	2677	genome.wustl.edu	37	2	85780435	85780435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000821.4	-1	reviewed	p.R359C	1.000	131	0%	158	16.5%	7	14.2%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_VKG_Carbox
USP39	10713	genome.wustl.edu	37	2	85857881	85857881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006590.2	+1	validated	p.L254P	1.000	160	0%	176	28.4%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
GNLY	10578	genome.wustl.edu	37	2	85924630	85924630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006433.3	+1	reviewed	p.R86I	0.000	38	0%	37	21.6%	59	0%	possibly_damaging(0.85)	tolerated(0.09)	deleterious(0.623)	HMMSmart_SM00741,superfamily_Saposin
PTCD3	55037	genome.wustl.edu	37	2	86357814	86357814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017952.5	+1	validated	p.M397I	0.902	231	0%	192	20.8%	1	0%	possibly_damaging(0.637)	tolerated(0.12)	deleterious(0.484)	NULL
IMMT	10989	genome.wustl.edu	37	2	86400836	86400836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006839.2	-1	validated	p.E120*	1.000	55	0%	45	35.6%	5	0%	-	-	-	HMMPfam_Mitofilin
IMMT	10989	genome.wustl.edu	37	2	86406562	86406562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006839.2	-1	validated	p.K101N	1.000	126	0%	129	20.9%	1	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Mitofilin
KDM3A	55818	genome.wustl.edu	37	2	86678249	86678249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018433.5	+1	reviewed	p.K122N	1.000	77	0%	99	20.2%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM3A	55818	genome.wustl.edu	37	2	86682259	86682259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018433.5	+1	reviewed	p.E169*	1.000	78	0%	78	37.2%	0	-	-	-	-	NULL
KDM3A	55818	genome.wustl.edu	37	2	86691288	86691288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018433.5	+1	reviewed	p.T319I	0.991	233	0%	216	24.5%	0	-	possibly_damaging(0.822)	deleterious(0.03)	deleterious(0.675)	NULL
RMND5A	64795	genome.wustl.edu	37	2	86979111	86979111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022780.3	+1	validated	p.F126L	1.000	120	0%	156	34%	8	50%	benign(0.001)	tolerated(1)	-	HMMSmart_SM00667
CD8B	926	genome.wustl.edu	37	2	87085427	87085427	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172213.3	-1	reviewed	p.I52	0.989	46	0%	66	25.8%	28	0%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
FABP1	2168	genome.wustl.edu	37	2	88425865	88425865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001443.1	-1	reviewed	p.L24M	0.790	431	0%	436	26.6%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_Lipocalin,superfamily_Lipocalins
EIF2AK3	9451	genome.wustl.edu	37	2	88874524	88874524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004836.5	-1	reviewed	p.R826Q	0.000	406	0%	394	33%	2	50%	benign(0.015)	tolerated(0.53)	neutral(0.008)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK3	9451	genome.wustl.edu	37	2	88892875	88892875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004836.5	-1	reviewed	p.E228K	0.998	232	0%	188	27.7%	0	-	possibly_damaging(0.546)	tolerated(0.11)	neutral(0.457)	superfamily_Quinoprotein alcohol dehydrogenase-like
IGKV5-2	28907	genome.wustl.edu	37	2	89197092	89197092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390244	+1	known	p.S46N	0.073	209	0%	333	31.5%	1	0%	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
ENSG00000232747	0	genome.wustl.edu	37	2	89923780	89923780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000442736	+1	known	p.S36Y	0.009	460	0%	463	11.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_V-set,superfamily_SSF48726
IGKV2D-29	28882	genome.wustl.edu	37	2	89987058	89987058	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000491977	+1	known	p.C113	0.080	188	0%	115	31.3%	3	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV2D-24	28885	genome.wustl.edu	37	2	90044425	90044425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000462693	+1	known	p.A116S	0.001	352	0%	329	23.4%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_SSF48726
IGKV1D-42	28892	genome.wustl.edu	37	2	90229425	90229425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390278	+1	known	p.S82L	0.517	248	0%	235	31.1%	0	-	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
TEKT4	150483	genome.wustl.edu	37	2	95539334	95539334	+	Silent	SNP	C	C	A	rs79674061		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144705.2	+1	provisional	p.R190	1.000	22	0%	21	38.1%	0	-	-	-	-	HMMPfam_Tektin
TEKT4	150483	genome.wustl.edu	37	2	95541418	95541418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144705.2	+1	provisional	p.A341D	0.993	31	0%	29	13.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tektin
ZNF514	84874	genome.wustl.edu	37	2	95815139	95815139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032788.1	-1	provisional	p.R364I	0.995	226	0%	187	24.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF2	7549	genome.wustl.edu	37	2	95847828	95847828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000453539	+1	known	p.R432C	0.974	110	0%	128	27.3%	2	50%	probably_damaging(0.989)	tolerated(0.15)	deleterious(0.680)	HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers
LOC344065	344065	genome.wustl.edu	37	2	95880420	95880420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_292895.7	+1	model	p.R229I	0.821	42	0%	38	23.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
TRIM43	129868	genome.wustl.edu	37	2	96265135	96265135	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138800.1	+1	provisional	p.L385	0.003	408	0%	491	12.6%	0	-	-	-	-	HMMPfam_SPRY
ENSG00000174501	0	genome.wustl.edu	37	2	96563081	96563081	+	Missense_Mutation	SNP	C	C	A	rs187095462	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000420871	-1	known	p.D252Y	0.000	84	0%	48	27.1%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ENSG00000174501	0	genome.wustl.edu	37	2	96578022	96578022	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000456556	-1	known	p.E875*	0.002	40	0%	38	50%	0	-	-	-	-	NULL
SNRNP200	23020	genome.wustl.edu	37	2	96944080	96944080	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014014.3	-1	reviewed	p.S1835	1.000	101	0%	106	31.1%	230	50.8%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96956081	96956081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014014.3	-1	reviewed	p.N909H	0.998	214	0%	143	25.9%	19	52.6%	benign(0.394)	deleterious(0)	deleterious(0.571)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRNP200	23020	genome.wustl.edu	37	2	96958734	96958734	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014014.3	-1	reviewed	p.I712	1.000	142	0%	92	22.8%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPRIPL1	150771	genome.wustl.edu	37	2	96993197	96993197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178495.5	+1	validated	p.E284D	0.910	39	0%	53	13.2%	2	0%	possibly_damaging(0.791)	tolerated(0.62)	neutral(0.300)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97864210	97864210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000461153	+1	known	p.E786D	0.004	47	0%	39	33.3%	0	-	benign(0.018)	tolerated(0.06)	neutral(0.323)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97881191	97881191	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000461153	+1	known	p.S1040	0.000	323	0%	187	14.4%	0	-	-	-	-	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98167807	98167807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025190.3	-1	provisional	p.K208N	0.039	69	0%	73	28.8%	0	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253329	98253329	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001714896.2	-1	model	p.E308*	0.996	55	0%	58	22.4%	0	-	-	-	-	superfamily_HMG-box
UBTFL6	643615	genome.wustl.edu	37	2	98253649	98253649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001714896.2	-1	model	p.K201T	0.997	66	0%	86	30.2%	0	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98254182	98254182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001714896.2	-1	model	p.L23F	0.931	148	0%	140	31.4%	0	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98254185	98254185	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001714896.2	-1	model	p.I22	0.409	149	0%	140	30.7%	0	-	-	-	-	NULL
ZAP70	7535	genome.wustl.edu	37	2	98354491	98354491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079.3	+1	reviewed	p.E553K	0.998	20	0%	40	15%	59	0%	benign(0.013)	tolerated(0.06)	neutral(0.323)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZAP70	7535	genome.wustl.edu	37	2	98355881	98355881	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079.3	+1	reviewed	p.R594*	0.574	19	0%	19	36.8%	42	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TMEM131	23505	genome.wustl.edu	37	2	98409885	98409885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015348.1	-1	validated	p.R1173I	1.000	156	0%	71	15.5%	14	14.2%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99013274	99013274	+	Silent	SNP	C	C	T	rs104893617	byCluster;byFrequency	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001298.2	+1	reviewed	p.F547	1.000	96	0%	91	35.2%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding
TSGA10	80705	genome.wustl.edu	37	2	99651704	99651704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025244.2	-1	validated	p.E535*	1.000	208	0%	149	29.5%	0	-	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99681554	99681554	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025244.2	-1	validated	p.R418*	1.000	709	0%	476	34.9%	0	-	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99722141	99722141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025244.2	-1	validated	p.R77Q	1.000	810	0%	550	23.8%	1	100%	benign(0.224)	tolerated(0.39)	neutral(0.038)	NULL
LIPT1	51601	genome.wustl.edu	37	2	99778521	99778521	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015929.3	+1	reviewed	p.L34*	1.000	329	0%	342	37.4%	0	-	-	-	-	NULL
TXNDC9	10190	genome.wustl.edu	37	2	99936193	99936193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005783.3	-1	reviewed	p.K211N	1.000	140	0%	125	28.8%	0	-	benign(0.252)	tolerated(0.17)	neutral(0.085)	NULL
EIF5B	9669	genome.wustl.edu	37	2	99978179	99978179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015904.3	+1	reviewed	p.S272Y	0.009	360	0%	293	21.8%	7	57.1%	possibly_damaging(0.819)	deleterious(0.03)	deleterious(0.674)	NULL
EIF5B	9669	genome.wustl.edu	37	2	99980118	99980118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015904.3	+1	reviewed	p.E310D	1.000	206	0%	157	26.8%	4	75%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
TBC1D8	11138	genome.wustl.edu	37	2	101627984	101627984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102426.1	-1	validated	p.R934Q	0.305	122	0%	156	30.8%	22	36.3%	benign(0.01)	tolerated(0.61)	neutral(0.005)	NULL
CREG2	200407	genome.wustl.edu	37	2	101967507	101967507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153836.3	-1	validated	p.R251C	0.798	81	0%	58	48.3%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_FMN_binding
IL1R2	7850	genome.wustl.edu	37	2	102636266	102636266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004633.3	+1	reviewed	p.R227H	0.003	80	0%	48	29.2%	1	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_IG,superfamily_SSF48726
IL18RAP	8807	genome.wustl.edu	37	2	103040794	103040794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003853.2	+1	reviewed	p.L167I	0.104	268	0%	241	34.4%	1	0%	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00409
SLC9A4	389015	genome.wustl.edu	37	2	103142801	103142801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001011552.3	+1	validated	p.F678L	0.002	118	0%	95	21.1%	5	0%	benign(0.071)	tolerated(0.61)	neutral(0.009)	NULL
SLC9A2	6549	genome.wustl.edu	37	2	103318923	103318923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003048.3	+1	validated	p.E603*	1.000	319	0%	229	24.9%	0	-	-	-	-	NULL
POU3F3	5455	genome.wustl.edu	37	2	105473057	105473057	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006236.1	+1	provisional	p.F363	1.000	30	0%	34	35.3%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA
C2orf40	84417	genome.wustl.edu	37	2	106690392	106690392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032411.2	+1	validated	p.E60*	0.710	157	0%	135	28.1%	0	-	-	-	-	NULL
PLGLA	285189	genome.wustl.edu	37	2	107009280	107009280	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000482249	+1	known	NULL	0.188	178	0%	176	31.8%	0	-	-	-	-	-
RGPD4	285190	genome.wustl.edu	37	2	108475841	108475841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182588.2	+1	validated	p.L489I	1.000	392	0%	377	20.2%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108487762	108487762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182588.2	+1	validated	p.R1101Q	1.000	861	0.1%	756	23.1%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RGPD4	285190	genome.wustl.edu	37	2	108488799	108488799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182588.2	+1	validated	p.R1447C	0.985	1386	0%	1180	16.4%	3	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
SLC5A7	60482	genome.wustl.edu	37	2	108609484	108609484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021815.2	+1	provisional	p.P117S	1.000	249	0%	177	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
SLC5A7	60482	genome.wustl.edu	37	2	108618400	108618400	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021815.2	+1	provisional	p.I215	0.970	127	0%	157	19.1%	0	-	-	-	-	HMMPfam_SSF
SLC5A7	60482	genome.wustl.edu	37	2	108626692	108626692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021815.2	+1	provisional	p.S373L	1.000	120	0%	105	42.9%	0	-	benign(0.345)	deleterious(0.02)	deleterious(0.492)	HMMPfam_SSF
GCC2	9648	genome.wustl.edu	37	2	109102173	109102173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181453.3	+1	reviewed	p.L1232R	1.000	211	0%	168	23.2%	1	0%	probably_damaging(1)	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109111752	109111752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181453.3	+1	reviewed	p.V1485F	1.000	131	0%	121	25.6%	4	0%	benign(0.317)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109384004	109384004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006267.4	+1	reviewed	p.A2337T	1.000	864	0.1%	670	27%	2	50%	probably_damaging(1)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109384259	109384259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006267.4	+1	reviewed	p.R2422C	0.977	1262	0.1%	1171	19.2%	2	0%	probably_damaging(0.997)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109392288	109392288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006267.4	+1	reviewed	p.S2798Y	0.035	263	0.4%	260	31.5%	5	40%	probably_damaging(0.964)	-	-	NULL
MALL	7851	genome.wustl.edu	37	2	110849251	110849251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005434.4	-1	validated	p.L68I	0.937	202	0%	220	14.5%	8	75%	unknown(0)	-	-	HMMPfam_MARVEL
ANAPC1	64682	genome.wustl.edu	37	2	112582744	112582744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022662.2	-1	validated	p.A902V	0.406	420	0.5%	336	31%	2	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
MERTK	10461	genome.wustl.edu	37	2	112686714	112686714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006343.2	+1	reviewed	p.E27K	0.053	109	0%	82	30.5%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
TMEM87B	84910	genome.wustl.edu	37	2	112854851	112854851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032824.2	+1	validated	p.I419L	0.976	333	0%	334	29.9%	7	42.8%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_Lung_7-TM_R
TMEM87B	84910	genome.wustl.edu	37	2	112863605	112863605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032824.2	+1	validated	p.K493Q	1.000	542	0%	575	31%	0	-	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	NULL
FBLN7	129804	genome.wustl.edu	37	2	112945086	112945086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000409903	+1	known	p.G357D	0.004	146	0%	122	24.6%	3	0%	unknown(0)	-	-	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147720	113147720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000302558	-1	known	p.K934N	0.824	787	0%	541	22.9%	0	-	probably_damaging(0.962)	tolerated(0.17)	neutral(0.464)	NULL
POLR1B	84172	genome.wustl.edu	37	2	113326342	113326342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019014.4	+1	validated	p.I646S	0.996	212	0%	196	27.6%	6	16.6%	benign(0.248)	deleterious(0)	deleterious(0.470)	HMMPfam_RNA_pol_Rpb2_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
SLC20A1	6574	genome.wustl.edu	37	2	113418134	113418134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005415.3	+1	provisional	p.P593L	1.000	99	0%	89	24.7%	35	28.5%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	HMMPfam_PHO4
IL37	27178	genome.wustl.edu	37	2	113675300	113675300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014439.3	+1	reviewed	p.F118L	0.008	272	0.4%	254	33.5%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00125,superfamily_Cytokine
DPP10	57628	genome.wustl.edu	37	2	116593774	116593774	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020868.3	+1	validated	p.D664	1.000	91	0%	60	35%	0	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
DDX18	8886	genome.wustl.edu	37	2	118575261	118575261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006773.3	+1	reviewed	p.K109N	0.987	351	0%	283	22.3%	1	100%	possibly_damaging(0.753)	tolerated(0.15)	deleterious(0.518)	superfamily_SSF52540
INSIG2	51141	genome.wustl.edu	37	2	118865878	118865878	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016133.2	+1	reviewed	p.E220*	1.000	126	0%	56	25%	12	33.3%	-	-	-	NULL
STEAP3	55240	genome.wustl.edu	37	2	120003518	120003518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182915.2	+1	validated	p.I159S	1.000	49	0%	65	16.9%	24	45.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
PTPN4	5775	genome.wustl.edu	37	2	120692378	120692378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002830.2	+1	reviewed	p.R400Q	1.000	138	0%	78	29.5%	4	25%	benign(0.033)	tolerated(0.08)	neutral(0.301)	NULL
PTPN4	5775	genome.wustl.edu	37	2	120702778	120702778	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002830.2	+1	reviewed	p.E493*	1.000	181	0%	137	28.5%	0	-	-	-	-	superfamily_PDZ
TFCP2L1	29842	genome.wustl.edu	37	2	121999993	121999993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014553.2	-1	validated	p.R237I	1.000	120	0%	124	29.8%	0	-	possibly_damaging(0.537)	deleterious(0)	deleterious(0.626)	HMMPfam_CP2
CNTNAP5	129684	genome.wustl.edu	37	2	124999967	124999967	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130773.2	+1	reviewed	p.I126	1.000	70	0%	50	22%	0	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
CNTNAP5	129684	genome.wustl.edu	37	2	125530564	125530564	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130773.2	+1	reviewed	p.R907*	0.679	265	0%	191	27.2%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CYP27C1	339761	genome.wustl.edu	37	2	127944866	127944866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001665.3	-1	reviewed	p.R367Q	0.141	94	0%	69	17.4%	0	-	benign(0.026)	tolerated(1)	neutral(0.001)	HMMPfam_p450,superfamily_Cytochrome P450
ERCC3	2071	genome.wustl.edu	37	2	128044438	128044438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000122.1	-1	reviewed	p.D395N	0.999	117	0%	126	30.2%	34	38.2%	benign(0.317)	deleterious(0)	deleterious(0.543)	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP3K2	10746	genome.wustl.edu	37	2	128065305	128065305	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006609.3	-1	reviewed	p.I570	1.000	27	0%	25	20%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYO7B	4648	genome.wustl.edu	37	2	128324367	128324367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080527.1	+1	provisional	p.M145I	1.000	35	0%	38	26.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
POTEF	728378	genome.wustl.edu	37	2	130869577	130869577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099771.2	-1	validated	p.R303I	0.002	100	0%	96	32.3%	0	-	probably_damaging(0.976)	tolerated(0.06)	deleterious(0.740)	HMMPfam_Ank,superfamily_ANK
PTPN18	26469	genome.wustl.edu	37	2	131116856	131116856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014369.3	+1	reviewed	p.D85N	0.979	73	0%	83	21.7%	13	30.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
TMEM163	81615	genome.wustl.edu	37	2	135223757	135223757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030923.4	-1	validated	p.L199I	1.000	39	0%	27	25.9%	0	-	benign(0.009)	tolerated(0.75)	neutral(0.002)	NULL
TMEM163	81615	genome.wustl.edu	37	2	135308200	135308200	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030923.4	-1	validated	p.A133	0.841	94	0%	55	29.1%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135744261	135744261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025052.3	-1	validated	p.K727N	0.271	228	0%	183	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YSK4	80122	genome.wustl.edu	37	2	135745101	135745101	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025052.3	-1	validated	p.V447	0.000	211	0%	194	24.7%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135745186	135745186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025052.3	-1	validated	p.R419I	0.000	197	0%	216	27.3%	0	-	benign(0.288)	deleterious(0)	deleterious(0.533)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135893155	135893155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012233.2	+1	reviewed	p.R526G	1.000	92	0%	107	30.8%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136399296	136399296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015361.2	+1	provisional	p.F470L	1.000	148	0%	160	11.9%	1	0%	probably_damaging(0.977)	tolerated(0.23)	neutral(0.460)	NULL
LCT	3938	genome.wustl.edu	37	2	136566815	136566815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002299.2	-1	reviewed	p.E1034D	0.861	106	0%	80	10%	0	-	probably_damaging(0.953)	tolerated(0.6)	neutral(0.401)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136567238	136567238	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002299.2	-1	reviewed	p.F893	1.000	145	0%	124	25.8%	0	-	-	-	-	NULL
MCM6	4175	genome.wustl.edu	37	2	136614338	136614338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005915.4	-1	reviewed	p.R529Q	1.000	255	0%	234	25.6%	21	52.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
THSD7B	80731	genome.wustl.edu	37	2	137928430	137928430	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080427.1	+1	provisional	p.E518*	0.999	128	0%	104	32.7%	0	-	-	-	-	NULL
THSD7B	80731	genome.wustl.edu	37	2	138169355	138169355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080427.1	+1	provisional	p.E927*	1.000	305	0%	205	22.4%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7B	80731	genome.wustl.edu	37	2	138169380	138169380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080427.1	+1	provisional	p.R935Q	0.609	230	0%	171	53.8%	0	-	benign(0.176)	tolerated(0.65)	neutral(0.019)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7B	80731	genome.wustl.edu	37	2	138414483	138414483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080427.1	+1	provisional	p.S1379Y	1.000	320	0%	331	26.6%	0	-	possibly_damaging(0.86)	deleterious(0.03)	deleterious(0.697)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
LOC440917	440917	genome.wustl.edu	37	2	139045625	139045625	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_041289.2	-1	model	NULL	0.999	223	0%	263	21.3%	0	-	-	-	-	-
NXPH2	11249	genome.wustl.edu	37	2	139428578	139428578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007226.2	-1	validated	p.F237V	1.000	188	0%	142	28.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Neurexophilin
LRP1B	53353	genome.wustl.edu	37	2	141055423	141055423	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000437977	-1	known	p.L539R	0.014	690	0%	655	20.8%	0	-	-	-	-	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
LRP1B	53353	genome.wustl.edu	37	2	141116507	141116507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018557.2	-1	validated	p.L3714I	1.000	265	0%	295	25.4%	0	-	benign(0.052)	tolerated(0.49)	neutral(0.014)	HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141474298	141474298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018557.2	-1	validated	p.T1949I	1.000	407	0%	465	26.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141607889	141607889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018557.2	-1	validated	p.K1574T	1.000	124	0%	102	32.4%	0	-	probably_damaging(0.958)	tolerated(0.11)	deleterious(0.673)	superfamily_SSF57196,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141609264	141609264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018557.2	-1	validated	p.C1556*	0.996	297	0%	252	25.4%	0	-	-	-	-	HMMSmart_EGF,superfamily_SSF57196
LRP1B	53353	genome.wustl.edu	37	2	141816552	141816552	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018557.2	-1	validated	p.I436	0.922	195	0%	176	25%	0	-	-	-	-	HMMSmart_LY,superfamily_SSF63825
ARHGAP15	55843	genome.wustl.edu	37	2	143913106	143913106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018460.3	+1	validated	p.S16Y	0.998	131	0%	160	22.5%	1	0%	possibly_damaging(0.806)	deleterious(0.02)	deleterious(0.686)	NULL
ARHGAP15	55843	genome.wustl.edu	37	2	143986208	143986208	+	Nonsense_Mutation	SNP	G	G	T	rs138543005		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018460.3	+1	validated	p.E119*	1.000	169	0%	153	25.5%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ARHGAP15	55843	genome.wustl.edu	37	2	144193251	144193251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018460.3	+1	validated	p.N186D	1.000	109	0%	55	32.7%	4	0%	possibly_damaging(0.679)	tolerated(0.4)	neutral(0.258)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GTDC1	79712	genome.wustl.edu	37	2	144714898	144714898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006636.3	-1	validated	p.S332P	1.000	80	0%	73	16.4%	2	50%	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ZEB2	9839	genome.wustl.edu	37	2	145147134	145147134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014795.3	-1	reviewed	p.E1177K	1.000	271	0%	281	26.3%	11	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145156336	145156336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014795.3	-1	reviewed	p.F806L	1.000	267	0%	200	22%	0	-	benign(0.081)	tolerated(0.83)	neutral(0.007)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145161673	145161673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014795.3	-1	reviewed	p.A206V	1.000	91	0%	78	30.8%	0	-	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
ORC4	5000	genome.wustl.edu	37	2	148705723	148705723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002552.2	-1	reviewed	p.S220*	1.000	231	0%	162	19.8%	1	0%	-	-	-	superfamily_SSF52540
MBD5	55777	genome.wustl.edu	37	2	149220164	149220164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018328.4	+1	reviewed	p.L43V	1.000	238	0%	140	22.1%	0	-	unknown(0)	tolerated(0.71)	-	HMMPfam_MBD,HMMSmart_SM00391
MBD5	55777	genome.wustl.edu	37	2	149227785	149227785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018328.4	+1	reviewed	p.A758V	1.000	139	0%	90	11.1%	4	0%	unknown(0)	tolerated(0.17)	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149227806	149227806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018328.4	+1	reviewed	p.N765S	1.000	156	0%	97	22.7%	3	100%	unknown(0)	deleterious(0.03)	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149241045	149241045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000404807	+1	known	p.N962S	1.000	84	0%	112	12.5%	0	-	unknown(0)	deleterious(0.01)	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149243474	149243474	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000416015	+1	known	p.A976V	1.000	134	0%	189	22.2%	0	-	-	-	-	NULL
KIF5C	3800	genome.wustl.edu	37	2	149868143	149868143	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000435030	+1	known	p.R943*	1.000	60	0%	81	30.9%	0	-	-	-	-	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152214205	152214205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007115.2	+1	reviewed	p.L9F	0.981	156	0%	136	22.1%	0	-	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
RIF1	55183	genome.wustl.edu	37	2	152319988	152319988	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018151.4	+1	reviewed	p.V1318	0.002	159	0%	130	39.2%	0	-	-	-	-	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152320692	152320692	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018151.4	+1	reviewed	p.E1553A	1.000	190	0%	146	19.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152321756	152321756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018151.4	+1	reviewed	p.E1908*	0.000	275	0%	224	28.1%	1	0%	-	-	-	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152364531	152364531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.K6112N	1.000	31	0%	15	40%	0	-	probably_damaging(1)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152388397	152388397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.K5443T	1.000	24	0%	19	26.3%	0	-	possibly_damaging(0.661)	tolerated(0.19)	neutral(0.283)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152421656	152421656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.Y4424H	1.000	19	0%	34	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152468835	152468835	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.V3647	0.001	158	0%	133	33.8%	0	-	-	-	-	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152507377	152507377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.R2313Q	1.000	436	0%	304	29.6%	0	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152521954	152521954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.L1711I	0.999	51	0%	45	24.4%	0	-	possibly_damaging(0.515)	tolerated(0.52)	neutral(0.182)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152527651	152527651	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004543.4	-1	reviewed	p.G1464	0.056	89	0%	85	30.6%	0	-	-	-	-	HMMSmart_SM00227
CACNB4	785	genome.wustl.edu	37	2	152695633	152695633	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000726.3	-1	reviewed	p.*521C	1.000	70	0%	58	10.3%	0	-	-	-	-	NULL
FMNL2	114793	genome.wustl.edu	37	2	153482066	153482066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052905.3	+1	reviewed	p.R651Q	1.000	59	0%	31	22.6%	1	0%	benign(0.128)	tolerated(0.19)	neutral(0.060)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
ARL6IP6	151188	genome.wustl.edu	37	2	153577101	153577101	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152522.4	+1	validated	e2+1	1.000	64	0%	36	30.6%	0	-	-	-	-	-
GALNT13	114805	genome.wustl.edu	37	2	155295128	155295128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052917.2	+1	validated	p.E474*	1.000	213	0%	114	20.2%	0	-	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
KCNJ3	3760	genome.wustl.edu	37	2	155555916	155555916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002239.2	+1	reviewed	p.T210M	1.000	49	0%	46	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_Ig_E-set
KCNJ3	3760	genome.wustl.edu	37	2	155711473	155711473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002239.2	+1	reviewed	p.S385Y	1.000	532	0%	267	30.3%	0	-	possibly_damaging(0.644)	tolerated(0.14)	deleterious(0.475)	HMMPfam_IRK
KCNJ3	3760	genome.wustl.edu	37	2	155711640	155711640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002239.2	+1	reviewed	p.S441R	1.000	391	0%	182	13.2%	0	-	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
GALNT5	11227	genome.wustl.edu	37	2	158115029	158115029	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014568.1	+1	provisional	p.D145	0.000	162	0%	136	14.7%	0	-	-	-	-	NULL
ERMN	57471	genome.wustl.edu	37	2	158178085	158178085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009959.1	-1	validated	p.E198*	0.997	505	0%	403	24.6%	0	-	-	-	-	NULL
CYTIP	9595	genome.wustl.edu	37	2	158283908	158283908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004288.4	-1	reviewed	p.M167I	0.998	63	0%	62	30.6%	10	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	superfamily_PDZ
ACVR1C	130399	genome.wustl.edu	37	2	158395119	158395119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145259.2	-1	validated	p.R441Q	1.000	322	0%	226	22.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC148	130940	genome.wustl.edu	37	2	159107387	159107387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138803.3	-1	validated	p.R383I	1.000	137	0%	131	23.7%	2	0%	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159195325	159195325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138803.3	-1	validated	p.S226Y	1.000	155	0%	170	24.1%	1	100%	possibly_damaging(0.83)	tolerated(0.06)	deleterious(0.638)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160182245	160182245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013450.2	-1	validated	p.S2043Y	0.912	271	0%	172	30.2%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	superfamily_Bromodomain
BAZ2B	29994	genome.wustl.edu	37	2	160193466	160193466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013450.2	-1	validated	p.S1928*	1.000	410	0%	304	23.7%	1	0%	-	-	-	superfamily_FYVE/PHD zinc finger
BAZ2B	29994	genome.wustl.edu	37	2	160204062	160204062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013450.2	-1	validated	p.L1797V	0.494	355	0%	252	25.8%	5	20%	benign(0.008)	tolerated(0.12)	neutral(0.261)	NULL
CD302	9936	genome.wustl.edu	37	2	160636685	160636685	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014880.4	-1	validated	p.A100	0.004	117	0%	78	26.9%	6	33.3%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
SLC4A10	57282	genome.wustl.edu	37	2	162738870	162738870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022058.3	+1	reviewed	p.F340L	1.000	61	0%	31	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A10	57282	genome.wustl.edu	37	2	162761414	162761414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022058.3	+1	reviewed	p.F552L	1.000	74	0%	64	21.9%	0	-	probably_damaging(0.976)	tolerated(0.06)	deleterious(0.740)	HMMPfam_HCO3_cotransp
SLC4A10	57282	genome.wustl.edu	37	2	162815049	162815049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022058.3	+1	reviewed	p.S919Y	1.000	42	0%	45	26.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1
DPP4	1803	genome.wustl.edu	37	2	162851883	162851883	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001935.3	-1	reviewed	e24-1	1.000	216	0%	130	30%	0	-	-	-	-	-
FAP	2191	genome.wustl.edu	37	2	163059653	163059653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004460.2	-1	reviewed	p.F350L	1.000	51	0%	41	22%	1	0%	possibly_damaging(0.734)	deleterious(0.01)	deleterious(0.674)	HMMPfam_DPPIV_N,superfamily_SSF82171
FAP	2191	genome.wustl.edu	37	2	163075634	163075634	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004460.2	-1	reviewed	p.Q182H	1.000	220	0%	153	17.6%	0	-	possibly_damaging(0.818)	deleterious(0.03)	deleterious(0.673)	HMMPfam_DPPIV_N,superfamily_SSF82171
COBLL1	22837	genome.wustl.edu	37	2	165551957	165551957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014900.3	-1	validated	p.D687Y	0.004	280	0.7%	291	30.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165946901	165946901	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006922.3	-1	reviewed	p.K1921T	1.000	147	0%	127	24.4%	0	-	possibly_damaging(0.494)	deleterious(0.04)	deleterious(0.513)	HMMPfam_IQ,HMMSmart_IQ
SCN3A	6328	genome.wustl.edu	37	2	165969412	165969412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006922.3	-1	reviewed	p.D1276Y	1.000	954	0%	739	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	166020359	166020359	+	Missense_Mutation	SNP	C	C	T	rs77258062		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081677.1	-1	reviewed	p.R216Q	1.000	95	0%	76	23.7%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166152438	166152438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040142.1	+1	reviewed	p.K35N	1.000	162	0%	120	20%	0	-	benign(0.424)	deleterious(0.01)	deleterious(0.543)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166165199	166165199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040142.1	+1	reviewed	p.T167N	1.000	261	0%	202	31.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166165685	166165685	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040143.1	+1	reviewed	p.E206*	1.000	195	0%	130	23.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166198865	166198865	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040142.1	+1	reviewed	p.Y816*	0.999	254	0%	259	24.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166231294	166231294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040142.1	+1	reviewed	p.L1358F	1.000	181	0%	145	13.8%	0	-	benign(0.041)	tolerated(0.1)	neutral(0.289)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSRNP3	80034	genome.wustl.edu	37	2	166535229	166535229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024969.3	+1	validated	p.P242S	1.000	208	0%	182	26.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CSRNP3	80034	genome.wustl.edu	37	2	166535709	166535709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024969.3	+1	validated	p.E402K	0.997	328	0%	310	34.2%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
TTC21B	79809	genome.wustl.edu	37	2	166744910	166744910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024753.3	-1	validated	p.P1113L	1.000	185	0%	156	21.8%	2	0%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	superfamily_TPR-like
TTC21B	79809	genome.wustl.edu	37	2	166785810	166785810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024753.3	-1	validated	p.K407N	1.000	172	0%	124	21%	0	-	benign(0.253)	deleterious(0.03)	neutral(0.391)	superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166848779	166848779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006920.4	-1	reviewed	p.A1658V	1.000	429	0%	511	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166854638	166854638	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006920.4	-1	reviewed	p.Y1451*	1.000	192	0%	213	30%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166859105	166859105	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006920.4	-1	reviewed	p.I1376	0.163	274	0.4%	273	18.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166900510	166900510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006920.4	-1	reviewed	p.R571K	1.000	130	0%	112	28.6%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167055248	167055248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002977.3	-1	reviewed	p.E1956D	0.995	65	0%	53	22.6%	0	-	possibly_damaging(0.942)	tolerated(0.34)	neutral(0.410)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167142954	167142954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002977.3	-1	reviewed	p.E498D	0.999	554	0%	426	32.6%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167145022	167145022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002977.3	-1	reviewed	p.I413M	0.005	265	0%	267	27.7%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167159671	167159671	+	Missense_Mutation	SNP	C	C	T	rs146758972		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002977.3	-1	reviewed	p.R277Q	0.000	102	0%	75	17.3%	0	-	benign(0.427)	tolerated(0.19)	neutral(0.189)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167160829	167160829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002977.3	-1	reviewed	p.E203*	1.000	112	0%	86	37.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167262585	167262585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002976.2	-1	validated	p.F1518L	0.998	203	0%	214	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167298010	167298010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002976.2	-1	validated	p.L685I	0.999	285	0%	320	30.9%	0	-	benign(0.136)	deleterious(0)	neutral(0.456)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167322448	167322448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002976.2	-1	validated	p.I238M	0.015	166	0%	137	31.4%	0	-	benign(0.048)	tolerated(0.29)	neutral(0.032)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167330813	167330813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002976.2	-1	validated	p.F92L	1.000	8	0.000	9	0.444	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168100571	168100571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152381.4	+1	validated	p.S890N	0.131	286	0%	257	24.9%	0	-	possibly_damaging(0.772)	tolerated(0.36)	neutral(0.307)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168102174	168102174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152381.4	+1	validated	p.F1424L	0.044	274	0%	243	25.5%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168103940	168103940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152381.4	+1	validated	p.R2013I	0.270	280	0%	299	32.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168115634	168115634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079810.2	+1	validated	p.D860Y	0.676	145	0%	226	26.1%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168115847	168115847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079810.2	+1	validated	p.N931H	1.000	152	0%	230	23.5%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168726190	168726190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020981.2	+1	reviewed	p.R214Q	1.000	153	0%	111	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
STK39	27347	genome.wustl.edu	37	2	168931506	168931506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013233.2	-1	reviewed	p.E410K	1.000	229	0.4%	253	25.3%	12	16.6%	benign(0.05)	tolerated(0.2)	neutral(0.052)	NULL
STK39	27347	genome.wustl.edu	37	2	168986101	168986101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013233.2	-1	reviewed	p.I347L	1.000	383	0%	468	20.7%	4	25%	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_Protein kinase-like (PK-like)
STK39	27347	genome.wustl.edu	37	2	169020354	169020354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013233.2	-1	reviewed	p.R156Q	1.000	203	0%	176	27.8%	4	0%	possibly_damaging(0.928)	tolerated(0.34)	neutral(0.399)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CERS6	253782	genome.wustl.edu	37	2	169626103	169626103	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203463.1	+1	validated	p.A362	0.206	103	0%	126	31%	9	33.3%	-	-	-	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169690745	169690745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039724.3	+1	validated	p.K138N	1.000	122	0%	134	38.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPC25	57405	genome.wustl.edu	37	2	169746011	169746011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020675.3	-1	reviewed	p.A7T	0.550	60	0%	88	31.8%	8	75%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
LRP2	4036	genome.wustl.edu	37	2	170028535	170028535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.E3751D	1.000	154	0%	101	26.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170031810	170031810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.R3554Q	0.000	57	0%	49	42.9%	0	-	benign(0.141)	tolerated(0.14)	neutral(0.262)	HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170063577	170063577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.S2218Y	1.000	427	0%	323	28.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170097669	170097669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.R1292W	1.000	199	0%	208	29.8%	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170099570	170099570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.T1188I	0.996	237	0%	169	20.1%	0	-	probably_damaging(0.993)	tolerated(0.09)	deleterious(0.746)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170103944	170103944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.R951Q	1.000	242	0%	220	33.6%	0	-	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170136938	170136938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.Q421H	0.998	162	0.6%	95	31.6%	0	-	benign(0.013)	tolerated(0.11)	neutral(0.272)	HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170136996	170136996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.R402Q	1.000	127	0%	80	22.5%	0	-	probably_damaging(0.988)	tolerated(0.42)	neutral(0.452)	superfamily_Grow_fac_recept,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170147508	170147508	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	e8-1	1.000	176	0%	174	33.3%	0	-	-	-	-	-
LRP2	4036	genome.wustl.edu	37	2	170148794	170148794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004525.2	-1	reviewed	p.D246E	1.000	231	0%	203	22.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
FASTKD1	79675	genome.wustl.edu	37	2	170402775	170402775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024622.3	-1	validated	p.L552V	0.863	122	0%	105	22.9%	2	100%	benign(0.318)	tolerated(0.29)	neutral(0.129)	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170411647	170411647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024622.3	-1	validated	p.E401*	1.000	92	0%	86	31.4%	4	25%	-	-	-	NULL
PPIG	9360	genome.wustl.edu	37	2	170487393	170487393	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004792.2	+1	validated	p.S219	0.991	309	0%	263	29.3%	9	55.5%	-	-	-	NULL
PPIG	9360	genome.wustl.edu	37	2	170492930	170492930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004792.2	+1	validated	p.L388V	1.000	156	0%	160	18.1%	7	28.5%	benign(0.041)	deleterious(0.02)	neutral(0.386)	NULL
PPIG	9360	genome.wustl.edu	37	2	170493734	170493734	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004792.2	+1	validated	p.E656*	1.000	132	0%	146	25.3%	5	20%	-	-	-	NULL
PHOSPHO2	493911	genome.wustl.edu	37	2	170558103	170558103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008489.2	+1	provisional	p.L208I	0.972	166	0%	160	23.7%	0	-	benign(0.165)	tolerated(0.43)	neutral(0.028)	HMMPfam_Put_Phosphatase
METTL5	29081	genome.wustl.edu	37	2	170676131	170676131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014168.2	-1	provisional	p.K143N	1.000	96	0%	99	38.4%	26	46.1%	benign(0.103)	tolerated(0.07)	neutral(0.327)	superfamily_SSF53335
MYO3B	140469	genome.wustl.edu	37	2	171256757	171256757	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138995.3	+1	validated	p.F617	1.000	593	0%	484	24.8%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DCAF17	80067	genome.wustl.edu	37	2	172336550	172336550	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000339506	+1	known	p.L174R	1.000	195	0%	133	27.1%	0	-	-	-	-	NULL
DCAF17	80067	genome.wustl.edu	37	2	172337624	172337624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000339506	+1	known	p.272T	0.878	252	0%	176	34.7%	0	-	-	-	-	NULL
CYBRD1	79901	genome.wustl.edu	37	2	172410002	172410002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024843.3	+1	validated	p.I183M	0.880	115	0%	114	27.2%	0	-	unknown(0)	-	-	HMMPfam_Cytochrom_B561
ITGA6	3655	genome.wustl.edu	37	2	173354279	173354279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079818.1	+1	reviewed	p.E858*	1.000	243	0%	177	31.6%	1	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ZAK	51776	genome.wustl.edu	37	2	174052346	174052346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016653.2	+1	reviewed	p.R137I	1.000	349	0%	275	28.4%	4	25%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like)
SP3	6670	genome.wustl.edu	37	2	174777836	174777836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003111.4	-1	reviewed	p.R664Q	1.000	172	0%	78	21.8%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GPR155	151556	genome.wustl.edu	37	2	175304647	175304647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033045.2	-1	validated	p.R764Q	0.834	107	0%	86	34.9%	0	-	benign(0.01)	tolerated(0.45)	neutral(0.013)	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
GPR155	151556	genome.wustl.edu	37	2	175330588	175330588	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033045.2	-1	validated	p.E437*	1.000	79	0%	62	9.7%	0	-	-	-	-	NULL
LOC100133109	100133109	genome.wustl.edu	37	2	175584746	175584746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001716442.2	-1	model	p.L78I	1.000	59	0%	47	23.4%	328	0%	-	-	-	NULL
ATP5G3	518	genome.wustl.edu	37	2	176043908	176043908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002258.4	-1	reviewed	p.A64V	1.000	134	0%	131	9.9%	397	16.6%	benign(0.009)	tolerated(0.7)	neutral(0.003)	NULL
KIAA1715	80856	genome.wustl.edu	37	2	176802237	176802237	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030650.1	-1	validated	p.R297*	1.000	124	0%	81	40.7%	2	0%	-	-	-	HMMPfam_DUF2296
HOXD12	3238	genome.wustl.edu	37	2	176965305	176965305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000404162	+1	known	p.E220K	0.281	5	0.000	12	0.417	0	-	unknown(0)	deleterious(0)	-	NULL
HOXD9	3235	genome.wustl.edu	37	2	176988684	176988684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014213.3	+1	reviewed	p.I280	1.000	90	0%	140	22.1%	5	0%	-	-	-	superfamily_Homeodomain-like
OSBPL6	114880	genome.wustl.edu	37	2	179247784	179247784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145739.1	+1	reviewed	p.R556Q	1.000	140	0%	119	37.8%	0	-	possibly_damaging(0.867)	tolerated(0.59)	neutral(0.341)	HMMPfam_Oxysterol_BP
OSBPL6	114880	genome.wustl.edu	37	2	179259041	179259041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145739.1	+1	reviewed	p.F863L	1.000	340	0%	312	22.1%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_Oxysterol_BP
TTN	7273	genome.wustl.edu	37	2	179395047	179395047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.S32862Y	0.655	302	0%	258	18.6%	0	-	benign(0.281)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179399936	179399936	+	Silent	SNP	G	G	T	rs55802460	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133378.4	-1	reviewed	p.S31234Y	0.988	268	0%	190	26.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179401078	179401078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.R30896C	1.000	106	0%	84	36.9%	0	-	probably_damaging(1)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179407087	179407087	+	Missense_Mutation	SNP	C	C	T	rs55915651		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E29896K	1.000	67	0%	70	15.7%	0	-	possibly_damaging(0.863)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179410325	179410325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E29268*	1.000	526	0%	429	28.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179417101	179417101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E27606*	1.000	124	0%	104	25%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179428334	179428334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.R24939*	1.000	210	0%	212	30.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179448598	179448598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.K19201E	1.000	43	0%	52	30.8%	0	-	possibly_damaging(0.662)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179458949	179458949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.D16821N	0.999	68	0%	78	20.5%	0	-	benign(0.29)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179459338	179459338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E16725*	1.000	113	0%	89	31.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179463539	179463539	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133378.4	-1	reviewed	p.S16398*	1.000	356	0%	398	25.4%	1	100%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179466063	179466063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.R15986Q	1.000	169	0%	175	28%	0	-	possibly_damaging(0.763)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179472651	179472651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E15053D	1.000	243	0%	309	28.2%	0	-	benign(0.049)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179475744	179475744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.A14470T	0.992	261	0%	276	29%	0	-	benign(0.29)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179482589	179482589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.S13262I	1.000	171	0%	232	28.4%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179485595	179485595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.F12680L	1.000	224	0%	265	28.7%	0	-	benign(0.099)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179486292	179486292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.L12519M	1.000	118	0%	111	24.3%	1	0%	possibly_damaging(0.741)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig
TTN	7273	genome.wustl.edu	37	2	179490033	179490033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.D12271Y	1.000	353	0%	348	38.8%	0	-	possibly_damaging(0.741)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179499150	179499150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.G11552W	1.000	108	0%	99	27.3%	0	-	possibly_damaging(0.503)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179526523	179526523	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000392423	-1	known	p.S636	0.001	522	0%	591	13.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179536814	179536814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.K10403T	0.939	274	0%	203	26.1%	1	100%	unknown(0)	deleterious(0.03)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179569676	179569676	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E8630	1.000	341	0%	322	25.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179575835	179575835	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.T8132	0.997	236	0%	172	29.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179575973	179575973	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.I8086	0.996	246	0%	224	26.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179577956	179577956	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.G7725*	1.000	54	0%	57	29.8%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179583921	179583921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.D6822N	0.941	172	0%	213	27.7%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594438	179594438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.R4937Q	0.999	301	0%	349	28.9%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594443	179594443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.E4935D	1.000	300	0%	337	27.6%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594996	179594996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356127	-1	known	p.K4800T	1.000	73	0%	50	30%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179604290	179604290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000342175	-1	known	p.A4386D	0.000	289	0%	242	24%	0	-	possibly_damaging(0.539)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179604979	179604979	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000342175	-1	known	p.S4156	0.171	234	0%	207	22.2%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179606598	179606598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000342175	-1	known	p.E3617K	0.284	59	0%	39	28.2%	0	-	possibly_damaging(0.539)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179611774	179611774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.S5118Y	0.007	237	0%	244	27.9%	0	-	benign(0.195)	deleterious(0.01)	neutral(0.424)	NULL
TTN	7273	genome.wustl.edu	37	2	179612894	179612894	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.E4745*	0.087	196	0%	166	24.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179614364	179614364	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.E4255*	0.000	233	0%	205	18.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179615320	179615320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.R3936Q	0.199	133	0%	104	31.7%	0	-	benign(0.002)	tolerated(0.44)	neutral(0.013)	superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179616041	179616041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.K3696E	0.752	287	0%	234	22.6%	0	-	benign(0)	tolerated(1)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179623811	179623811	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.L3401	1.000	169	0%	131	16%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179641543	179641543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.R1683Q	1.000	148	0%	121	22.3%	0	-	benign(0.287)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179641740	179641740	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.I1617	0.847	143	0%	147	27.9%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647289	179647289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.E1047D	1.000	66	0%	49	34.7%	0	-	benign(0.049)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179650417	179650417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133379.3	-1	reviewed	p.R808H	1.000	103	0%	59	20.3%	0	-	possibly_damaging(0.737)	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179720080	179720080	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173648.2	-1	provisional	p.I443	0.999	181	0%	147	25.9%	0	-	-	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179720222	179720222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173648.2	-1	provisional	p.S396Y	0.015	179	0%	136	17.6%	0	-	possibly_damaging(0.644)	deleterious(0.01)	deleterious(0.631)	NULL
CCDC141	285025	genome.wustl.edu	37	2	179736219	179736219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173648.2	-1	provisional	p.G139R	1.000	427	0%	406	31.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
CWC22	57703	genome.wustl.edu	37	2	180817208	180817208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020943.2	-1	validated	p.L603V	1.000	37	0%	41	22%	3	0%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	NULL
UBE2E3	10477	genome.wustl.edu	37	2	181922436	181922436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006357.2	+1	reviewed	p.D88Y	1.000	484	0%	754	19.9%	23	30.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
CERKL	375298	genome.wustl.edu	37	2	182413468	182413468	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001030311.2	-1	reviewed	p.R364*	1.000	284	0%	189	25.4%	0	-	-	-	-	NULL
CERKL	375298	genome.wustl.edu	37	2	182438595	182438595	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001030311.2	-1	reviewed	p.P166	0.319	209	0.5%	164	31.1%	0	-	-	-	-	NULL
SSFA2	6744	genome.wustl.edu	37	2	182780637	182780637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130445.1	+1	validated	p.R757Q	0.089	304	0%	404	30.2%	2	0%	benign(0.006)	tolerated(0.27)	neutral(0.034)	NULL
PDE1A	5136	genome.wustl.edu	37	2	183066263	183066263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005019.3	-1	validated	p.S359Y	1.000	225	0%	186	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
ZNF804A	91752	genome.wustl.edu	37	2	185800564	185800564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194250.1	+1	provisional	p.N147K	0.125	312	0%	191	19.9%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186669902	186669902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424728	+1	known	p.S5290Y	0.463	337	0%	361	21.1%	0	-	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671735	186671735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424728	+1	known	p.S5901Y	0.000	219	0%	255	32.5%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186680179	186680179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424728	+1	known	p.D6803Y	0.979	105	0%	91	29.7%	0	-	possibly_damaging(0.698)	deleterious(0)	deleterious(0.696)	NULL
FAM171B	165215	genome.wustl.edu	37	2	187608296	187608296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177454.3	+1	validated	p.L187V	0.998	104	0%	71	29.6%	0	-	benign(0.059)	tolerated(0.2)	neutral(0.053)	HMMPfam_UPF0560
ZSWIM2	151112	genome.wustl.edu	37	2	187702238	187702238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182521.2	-1	validated	p.L180V	0.990	131	0%	151	20.5%	0	-	possibly_damaging(0.923)	tolerated(0.05)	deleterious(0.718)	HMMSmart_RING,superfamily_SSF57850
TFPI	7035	genome.wustl.edu	37	2	188331724	188331724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006287.4	-1	reviewed	p.R285I	0.999	145	0%	86	19.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
COL3A1	1281	genome.wustl.edu	37	2	189855065	189855065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000090.3	+1	reviewed	p.F259L	1.000	77	0%	59	25.4%	51	0%	unknown(0)	tolerated(0.82)	-	HMMPfam_Collagen
COL3A1	1281	genome.wustl.edu	37	2	189856934	189856934	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000090.3	+1	reviewed	p.R326*	1.000	202	0%	149	24.2%	43	0%	-	-	-	HMMPfam_Collagen
COL3A1	1281	genome.wustl.edu	37	2	189871095	189871095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000090.3	+1	reviewed	p.P1040T	1.000	48	0%	51	23.5%	233	0%	probably_damaging(1)	tolerated(0.53)	deleterious(0.507)	HMMPfam_Collagen
COL3A1	1281	genome.wustl.edu	37	2	189873885	189873885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000090.3	+1	reviewed	p.S1254Y	0.995	140	0%	100	23%	80	0%	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_SM00038
COL5A2	1290	genome.wustl.edu	37	2	189917699	189917699	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000393.3	-1	reviewed	p.G867*	1.000	121	0%	103	32%	15	0%	-	-	-	HMMPfam_Collagen
ASNSD1	54529	genome.wustl.edu	37	2	190531980	190531980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019048.2	+1	validated	p.Q374H	0.000	175	0%	149	34.9%	5	60%	benign(0.006)	tolerated(0.08)	neutral(0.300)	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
ANKAR	150709	genome.wustl.edu	37	2	190557094	190557094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144708.3	+1	validated	p.E314*	1.000	107	0%	84	41.7%	0	-	-	-	-	superfamily_Ankyrin repeat
ANKAR	150709	genome.wustl.edu	37	2	190611118	190611118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144708.3	+1	validated	p.R1286Q	0.940	367	0%	366	23.8%	0	-	benign(0.011)	tolerated(0.22)	neutral(0.043)	NULL
PMS1	5378	genome.wustl.edu	37	2	190660510	190660510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000534.4	+1	reviewed	p.D50Y	1.000	185	0%	194	26.3%	2	100%	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
PMS1	5378	genome.wustl.edu	37	2	190738293	190738293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000534.4	+1	reviewed	p.D849Y	0.998	66	0%	64	12.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MSTN	2660	genome.wustl.edu	37	2	190922043	190922043	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005259.2	-1	reviewed	p.E357*	1.000	132	0.8%	119	24.4%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
MFSD6	54842	genome.wustl.edu	37	2	191301769	191301769	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017694.3	+1	validated	p.A338	0.943	112	0%	165	27.9%	3	0%	-	-	-	superfamily_MFS_gen_substrate_transporter
STAT4	6775	genome.wustl.edu	37	2	191927539	191927539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003151.2	-1	reviewed	p.R297I	0.972	132	0%	91	15.4%	1	0%	possibly_damaging(0.453)	deleterious(0.01)	deleterious(0.554)	HMMPfam_STAT_alpha,superfamily_STAT
TMEFF2	23671	genome.wustl.edu	37	2	192818483	192818483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016192.2	-1	provisional	p.F317C	1.000	153	0%	117	29.9%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196673459	196673459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.R3344C	1.000	347	0%	243	29.6%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196709789	196709789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.R2961Q	0.995	72	0%	84	19%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196726537	196726537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.S2547Y	0.764	196	0%	178	20.2%	0	-	benign(0.055)	deleterious(0.02)	neutral(0.387)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196729107	196729107	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.L2424	1.000	200	0%	145	24.8%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196729739	196729739	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.R2214*	0.045	281	0%	210	19%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196741367	196741367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.F2006L	1.000	255	0%	200	34%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196746696	196746696	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.P1928	0.287	165	0%	116	29.3%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196749416	196749416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.R1886*	0.995	222	0%	141	23.4%	0	-	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196756464	196756464	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018897.2	-1	validated	p.Q1654P	1.000	132	0%	119	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
HECW2	57520	genome.wustl.edu	37	2	197184344	197184344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020760.1	-1	provisional	p.E424K	0.998	77	0%	66	10.6%	0	-	benign(0.077)	deleterious(0)	neutral(0.450)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197656147	197656147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012086.2	-1	provisional	p.R150K	1.000	114	0%	198	27.8%	4	75%	probably_damaging(0.99)	tolerated(0.25)	deleterious(0.478)	HMMSmart_SM00028
ANKRD44	91526	genome.wustl.edu	37	2	197870568	197870568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153697.1	-1	provisional	p.D708Y	1.000	243	0.4%	162	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197872646	197872646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153697.1	-1	provisional	p.T647A	1.000	184	0%	142	30.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197964557	197964557	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153697.1	-1	provisional	p.S336	0.734	55	0%	65	21.5%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SF3B1	23451	genome.wustl.edu	37	2	198265089	198265089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012433.2	-1	reviewed	p.P930S	1.000	242	0%	277	26.4%	54	9.2%	probably_damaging(0.973)	tolerated(0.11)	deleterious(0.686)	HMMPfam_HEAT,superfamily_ARM repeat
SF3B1	23451	genome.wustl.edu	37	2	198273203	198273203	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012433.2	-1	reviewed	p.S336*	1.000	87	0%	105	37.1%	7	0%	-	-	-	HMMPfam_SF3b1
SF3B1	23451	genome.wustl.edu	37	2	198288678	198288678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012433.2	-1	reviewed	p.E17*	1.000	187	0%	228	21.1%	9	0%	-	-	-	NULL
RFTN2	130132	genome.wustl.edu	37	2	198508962	198508962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144629.2	-1	validated	p.R120C	0.989	68	0%	91	30.8%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
PLCL1	5334	genome.wustl.edu	37	2	198948514	198948514	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000428675	+1	known	p.K91	1.000	174	0%	106	32.1%	1	0%	-	-	-	NULL
PLCL1	5334	genome.wustl.edu	37	2	198968610	198968610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006226.3	+1	validated	p.K921Q	1.000	346	0%	358	28.5%	0	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
PLCL1	5334	genome.wustl.edu	37	2	199011546	199011546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006226.3	+1	validated	p.E952*	0.999	132	0%	153	20.3%	0	-	-	-	-	NULL
SATB2	23314	genome.wustl.edu	37	2	200233425	200233425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015265.3	-1	reviewed	p.M201I	1.000	72	0%	64	31.2%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201399874	201399874	+	Missense_Mutation	SNP	C	C	T	rs190369262	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152524.5	+1	validated	p.R97C	1.000	860	0%	649	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Shugoshin_N
SGOL2	151246	genome.wustl.edu	37	2	201435809	201435809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152524.5	+1	validated	p.S247Y	0.105	218	0%	207	35.3%	0	-	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436040	201436040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152524.5	+1	validated	p.R324I	0.004	157	0.6%	121	28.9%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436857	201436857	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152524.5	+1	validated	p.V596	0.862	292	0%	202	14.4%	0	-	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201438535	201438535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152524.5	+1	validated	p.R1156C	0.000	278	0.4%	255	17.6%	3	0%	possibly_damaging(0.722)	tolerated(0.1)	deleterious(0.548)	NULL
CLK1	1195	genome.wustl.edu	37	2	201721531	201721531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004071.3	-1	reviewed	p.R311C	1.000	363	0%	273	18.7%	24	41.6%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NIF3L1	60491	genome.wustl.edu	37	2	201756968	201756968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136039.2	+1	validated	p.K101T	1.000	156	0%	234	18.8%	24	25%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_NIF3,superfamily_NIF3 (NGG1p interacting factor 3)-like
ORC2	4999	genome.wustl.edu	37	2	201796161	201796161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006190.3	-1	reviewed	p.R273H	0.749	157	0%	144	28.5%	0	-	benign(0.007)	tolerated(0.55)	neutral(0.007)	HMMPfam_ORC2
CFLAR	8837	genome.wustl.edu	37	2	202014536	202014536	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127183.1	+1	validated	p.I257	0.901	69	0%	75	26.7%	4	25%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP8	841	genome.wustl.edu	37	2	202131412	202131412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080125.1	+1	reviewed	p.R127Q	0.037	105	0%	107	35.5%	1	100%	probably_damaging(0.994)	tolerated(0.33)	deleterious(0.476)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
CASP8	841	genome.wustl.edu	37	2	202136317	202136317	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080125.1	+1	reviewed	p.I187	0.002	124	0%	156	30.1%	1	0%	-	-	-	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
CASP8	841	genome.wustl.edu	37	2	202149794	202149794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080125.1	+1	reviewed	p.K412T	1.000	346	0%	306	31%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_CYS,superfamily_Caspase-like
ALS2CR12	130540	genome.wustl.edu	37	2	202173902	202173902	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000415745	-1	known	p.S24L	0.005	848	0%	578	21.6%	0	-	-	-	-	NULL
TRAK2	66008	genome.wustl.edu	37	2	202263032	202263032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015049.2	-1	validated	p.R176*	1.000	151	0%	122	21.3%	1	0%	-	-	-	HMMPfam_HAP1_N
ALS2	57679	genome.wustl.edu	37	2	202598038	202598038	+	Silent	SNP	G	G	A	rs181782027	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000439495	-1	known	p.R168C	1.000	96	0%	103	30.1%	0	-	-	-	-	superfamily_DBL homology domain (DH-domain)
ALS2	57679	genome.wustl.edu	37	2	202609092	202609092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020919.3	-1	reviewed	p.N687H	1.000	193	0%	152	32.9%	1	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_DBL homology domain (DH-domain)
ALS2CR8	79800	genome.wustl.edu	37	2	203826163	203826163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000444724	+1	known	p.K282N	0.001	49	0%	65	24.6%	0	-	unknown(0)	deleterious(0.04)	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204000926	204000926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114132.1	+1	validated	p.T1418I	0.217	105	0%	119	34.5%	0	-	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204009584	204009584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114132.1	+1	validated	p.E1675K	1.000	151	0%	128	30.5%	0	-	possibly_damaging(0.875)	tolerated(0.5)	neutral(0.350)	NULL
NRP2	8828	genome.wustl.edu	37	2	206617599	206617599	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201266.1	+1	reviewed	p.F648	0.990	53	0%	42	40.5%	2	100%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
INO80D	54891	genome.wustl.edu	37	2	206870180	206870180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017759.4	-1	validated	p.E666K	1.000	123	0%	138	32.6%	0	-	possibly_damaging(0.821)	tolerated(0.14)	deleterious(0.560)	NULL
NDUFS1	4719	genome.wustl.edu	37	2	206997721	206997721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005006.5	-1	reviewed	p.R501W	0.989	42	0%	47	21.3%	10	40%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Molybdopterin,superfamily_SSF53706
ZDBF2	57683	genome.wustl.edu	37	2	207161969	207161969	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020923.1	+1	validated	e2-1	1.000	99	0%	106	31.1%	0	-	-	-	-	-
ZDBF2	57683	genome.wustl.edu	37	2	207169517	207169517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020923.1	+1	validated	p.E89*	0.134	94	0%	88	22.7%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207170111	207170111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020923.1	+1	validated	p.K287Q	0.000	89	0%	89	32.6%	0	-	probably_damaging(0.978)	tolerated(0.09)	deleterious(0.717)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207174280	207174280	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020923.1	+1	validated	p.T1676	0.007	188	0%	177	23.2%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175683	207175683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020923.1	+1	validated	p.R2144I	0.001	213	0%	163	25.2%	0	-	benign(0.099)	-	-	NULL
KLF7	8609	genome.wustl.edu	37	2	207988586	207988586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003709.2	-1	provisional	p.K215N	1.000	122	0%	129	26.4%	2	0%	possibly_damaging(0.899)	deleterious(0.01)	deleterious(0.762)	superfamily_C2H2 and C2HC zinc fingers
KLF7	8609	genome.wustl.edu	37	2	207989075	207989075	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003709.2	-1	provisional	p.E52	1.000	86	0%	70	10%	1	0%	-	-	-	NULL
CREB1	1385	genome.wustl.edu	37	2	208461648	208461648	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_134442.3	+1	reviewed	p.R298*	0.996	139	0%	126	11.9%	4	25%	-	-	-	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
C2orf80	389073	genome.wustl.edu	37	2	209030493	209030493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000451342	-1	known	p.F130L	0.000	62	0%	56	32.1%	0	-	benign(0.001)	-	-	NULL
IDH1	3417	genome.wustl.edu	37	2	209106815	209106815	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005896.2	-1	reviewed	p.I251	0.377	168	0%	177	30.5%	88	42%	-	-	-	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
PIKFYVE	200576	genome.wustl.edu	37	2	209185002	209185002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015040.3	+1	reviewed	p.K703N	1.000	324	0%	214	27.1%	0	-	probably_damaging(0.969)	tolerated(0.15)	deleterious(0.652)	HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209189648	209189648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015040.3	+1	reviewed	p.R782Q	0.998	194	0%	130	27.7%	4	0%	possibly_damaging(0.928)	tolerated(0.08)	deleterious(0.675)	HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209194593	209194593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015040.3	+1	reviewed	p.K1249N	1.000	100	1%	82	18.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209315486	209315486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005048.2	+1	reviewed	p.A289V	0.034	191	0%	173	26%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_2,superfamily_SSF81321
MAP2	4133	genome.wustl.edu	37	2	210558192	210558192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002374.3	+1	reviewed	p.P433L	0.233	200	0%	148	35.1%	0	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210560565	210560565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002374.3	+1	reviewed	p.T1224M	0.020	160	0%	150	22%	0	-	benign(0.068)	deleterious(0)	neutral(0.449)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210595056	210595056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002374.3	+1	reviewed	p.E1807K	1.000	104	0%	104	21.2%	8	37.5%	benign(0.119)	deleterious(0.01)	neutral(0.415)	NULL
KANSL1L	151050	genome.wustl.edu	37	2	210894549	210894549	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152519.2	-1	validated	p.S750*	0.999	261	0%	216	32.4%	0	-	-	-	-	NULL
KANSL1L	151050	genome.wustl.edu	37	2	210905228	210905228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152519.2	-1	validated	p.E649*	1.000	132	0%	112	30.4%	4	50%	-	-	-	NULL
KANSL1L	151050	genome.wustl.edu	37	2	211018799	211018799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152519.2	-1	validated	p.N170H	0.998	243	0%	166	36.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212587245	212587245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000260943	-1	known	p.S252*	1.000	133	0%	82	19.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
BARD1	580	genome.wustl.edu	37	2	215646173	215646173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000465.2	-1	reviewed	p.S142*	0.997	304	0%	231	25.5%	0	-	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215818586	215818586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173076.2	-1	reviewed	p.K2213N	0.989	132	0%	73	26%	1	100%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215845213	215845213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173076.2	-1	reviewed	p.K1578N	1.000	163	0%	148	23.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215884364	215884364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173076.2	-1	reviewed	p.E482K	0.027	206	0%	136	25.7%	0	-	benign(0.021)	deleterious(0.03)	neutral(0.365)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215914350	215914350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173076.2	-1	reviewed	p.Q231H	1.000	154	0%	131	17.6%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
FN1	2335	genome.wustl.edu	37	2	216263993	216263993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_212482.1	-1	reviewed	p.R1112I	1.000	106	0%	115	20%	27	3.7%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216271016	216271016	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_212482.1	-1	reviewed	p.V977	1.000	146	0%	119	32.8%	18	11.1%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216273098	216273098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_212482.1	-1	reviewed	p.R784Q	1.000	268	0%	203	29.1%	16	6.2%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216289985	216289985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_212482.1	-1	reviewed	p.R290C	0.610	155	0%	140	31.4%	19	21%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
TNS1	7145	genome.wustl.edu	37	2	218700918	218700918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022648.4	-1	reviewed	p.E883D	1.000	73	0%	74	29.7%	0	-	benign(0.038)	tolerated(0.3)	neutral(0.030)	NULL
NHEJ1	79840	genome.wustl.edu	37	2	220023025	220023025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024782.2	-1	reviewed	p.E20D	0.990	187	0%	260	28.5%	10	0%	benign(0.058)	tolerated(1)	neutral(0.004)	HMMPfam_XLF
FAM134A	79137	genome.wustl.edu	37	2	220046101	220046101	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024293.4	+1	validated	p.G265	1.000	45	0%	75	22.7%	42	45.2%	-	-	-	NULL
ABCB6	10058	genome.wustl.edu	37	2	220075763	220075763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005689.1	-1	reviewed	p.T679I	1.000	37	0%	47	27.7%	93	52.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB6	10058	genome.wustl.edu	37	2	220078881	220078881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005689.1	-1	reviewed	p.E472K	1.000	50	0%	59	30.5%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
STK16	8576	genome.wustl.edu	37	2	220111318	220111318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000409260	+1	known	p.S54Y	0.000	25	0%	22	18.2%	1	0%	unknown(0)	tolerated(0.07)	-	superfamily_Kinase_like
TUBA4A	7277	genome.wustl.edu	37	2	220116295	220116295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006000.1	-1	reviewed	p.R123C	1.000	239	0%	199	29.6%	220	46.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
SPEG	10290	genome.wustl.edu	37	2	220333683	220333683	+	Missense_Mutation	SNP	C	C	A	rs55670811		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005876.4	+1	validated	p.A1135E	0.000	18	0%	17	29.4%	0	-	benign(0)	tolerated(0.8)	neutral(0.001)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220356958	220356958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005876.4	+1	validated	p.R3196Q	1.000	24	0%	20	30%	0	-	possibly_damaging(0.951)	tolerated(0.1)	deleterious(0.680)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OBSL1	23363	genome.wustl.edu	37	2	220420946	220420946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015311.2	-1	reviewed	p.E1469K	0.973	23	0%	32	34.4%	33	48.4%	benign(0.317)	tolerated(0.56)	neutral(0.106)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
SLC4A3	6508	genome.wustl.edu	37	2	220496705	220496705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201574.2	+1	validated	p.D303G	1.000	21	0%	31	25.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220496723	220496723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201574.2	+1	validated	p.R309Q	1.000	24	0%	29	37.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
EPHA4	2043	genome.wustl.edu	37	2	222298902	222298902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004438.3	-1	reviewed	p.S819L	1.000	280	0%	199	25.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EPHA4	2043	genome.wustl.edu	37	2	222436881	222436881	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004438.3	-1	reviewed	p.E30*	1.000	34	0%	47	23.4%	0	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
FARSB	10056	genome.wustl.edu	37	2	223488401	223488401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005687.3	-1	reviewed	p.A407T	0.998	351	0%	318	25.8%	79	54.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Class II aaRS and biotin synthetases
FARSB	10056	genome.wustl.edu	37	2	223507670	223507670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005687.3	-1	reviewed	p.A57T	1.000	133	0%	162	34%	4	25%	benign(0.308)	tolerated(0.45)	neutral(0.108)	superfamily_Putative DNA-binding domain
CUL3	8452	genome.wustl.edu	37	2	225368527	225368527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003590.3	-1	validated	p.E407*	1.000	47	0%	44	18.2%	8	0%	-	-	-	HMMPfam_Cullin,superfamily_Cullin homology domain
DOCK10	55619	genome.wustl.edu	37	2	225669780	225669780	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000409802	-1	known	p.L97I	0.998	71	0%	74	29.7%	0	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225672642	225672642	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014689.2	-1	validated	p.R1191*	1.000	68	0%	55	27.3%	0	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225695295	225695295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014689.2	-1	validated	p.S1000L	1.000	56	0%	58	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225721595	225721595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014689.2	-1	validated	p.L597R	1.000	92	0%	50	30%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226447014	226447014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020864.1	+1	validated	p.S294L	1.000	108	0%	129	29.5%	0	-	probably_damaging(0.98)	tolerated(0.29)	neutral(0.453)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228141115	228141115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000091.3	+1	reviewed	p.L648I	0.000	47	0%	41	17.1%	0	-	unknown(0)	tolerated(0.27)	-	HMMPfam_Collagen
MFF	56947	genome.wustl.edu	37	2	228205011	228205011	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020194.4	+1	provisional	p.R145*	1.000	86	0%	91	15.4%	5	0%	-	-	-	HMMPfam_DUF800
SLC19A3	80704	genome.wustl.edu	37	2	228563510	228563510	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025243.3	-1	reviewed	p.A307	0.991	157	0%	86	30.2%	0	-	-	-	-	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
WDR69	164781	genome.wustl.edu	37	2	228762980	228762980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178821.1	+1	provisional	p.G175S	1.000	149	0%	116	35.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR69	164781	genome.wustl.edu	37	2	228786166	228786166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178821.1	+1	provisional	p.T368P	1.000	238	0%	179	19%	0	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
SPHKAP	80309	genome.wustl.edu	37	2	228846573	228846573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142644.1	-1	validated	p.L1655I	1.000	84	0%	79	26.6%	0	-	probably_damaging(0.959)	tolerated(0.29)	neutral(0.432)	HMMPfam_AKAP_110
SPHKAP	80309	genome.wustl.edu	37	2	228855836	228855836	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142644.1	-1	validated	p.F1613L	1.000	136	0%	78	30.8%	0	-	possibly_damaging(0.787)	tolerated(0.35)	neutral(0.315)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228858262	228858262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142644.1	-1	validated	p.S1570F	1.000	41	0%	22	27.3%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
DNER	92737	genome.wustl.edu	37	2	230231694	230231694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139072.3	-1	validated	p.R666H	1.000	53	0%	58	24.1%	15	13.3%	benign(0.093)	deleterious(0)	neutral(0.452)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230652300	230652300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004238.1	-1	provisional	p.R1564I	1.000	226	0%	212	15.6%	6	16.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SP100	6672	genome.wustl.edu	37	2	231313823	231313823	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080391.1	+1	validated	p.R182*	0.000	194	0%	285	23.5%	10	10%	-	-	-	NULL
SP100	6672	genome.wustl.edu	37	2	231331017	231331017	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000427101	+1	known	p.A82T	0.000	257	0%	222	23%	10	0%	-	-	-	NULL
SP100	6672	genome.wustl.edu	37	2	231367814	231367814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080391.1	+1	validated	p.R585I	0.004	264	0%	235	26%	0	-	probably_damaging(0.965)	tolerated(0.13)	deleterious(0.659)	NULL
ITM2C	81618	genome.wustl.edu	37	2	231741620	231741620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030926.4	+1	validated	p.E167K	0.999	76	0%	42	16.7%	82	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_BRICHOS
PSMD1	5707	genome.wustl.edu	37	2	231925993	231925993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002807.2	+1	reviewed	p.S10Y	1.000	67	0%	68	58.8%	2	50%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
PSMD1	5707	genome.wustl.edu	37	2	231934867	231934867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002807.2	+1	reviewed	p.F213L	1.000	66	0%	63	33.3%	1	0%	benign(0.194)	deleterious(0.03)	neutral(0.383)	NULL
PSMD1	5707	genome.wustl.edu	37	2	231943457	231943457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002807.2	+1	reviewed	p.L386I	1.000	65	0%	64	34.4%	4	50%	probably_damaging(0.966)	deleterious(0.04)	deleterious(0.757)	NULL
DIS3L2	129563	genome.wustl.edu	37	2	233028259	233028259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152383.4	+1	validated	p.F347L	0.970	113	0%	70	28.6%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ECEL1	9427	genome.wustl.edu	37	2	233348762	233348762	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004826.2	-1	validated	p.A452	0.016	30	0%	30	30%	1	0%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
GIGYF2	26058	genome.wustl.edu	37	2	233709228	233709228	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001103147.1	+1	reviewed	p.V1104	0.995	178	0%	187	24.6%	1	0%	-	-	-	NULL
INPP5D	3635	genome.wustl.edu	37	2	234091072	234091072	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000359570	+1	known	p.I696	1.000	97	0%	103	27.2%	15	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
UGT1A8	54576	genome.wustl.edu	37	2	234526562	234526562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019076.4	+1	reviewed	p.L70R	0.000	470	0%	431	32.3%	0	-	benign(0.004)	tolerated(0.43)	neutral(0.013)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A9	54600	genome.wustl.edu	37	2	234581063	234581063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021027.2	+1	reviewed	p.F161L	0.000	499	0%	531	29.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A7	54577	genome.wustl.edu	37	2	234590991	234590991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019077.2	+1	reviewed	p.Y136*	0.000	488	0%	445	33.7%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A7	54577	genome.wustl.edu	37	2	234591286	234591286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019077.2	+1	reviewed	p.L235I	0.271	1014	0%	871	24.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
DNAJB3	414061	genome.wustl.edu	37	2	234652302	234652302	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001394.3	-1	validated	p.F87	0.993	69	0%	55	23.6%	1	0%	-	-	-	superfamily_DnaJ_N
TRPM8	79054	genome.wustl.edu	37	2	234851314	234851314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024080.4	+1	validated	p.E207D	1.000	140	0%	138	23.9%	0	-	benign(0.051)	tolerated(0.45)	neutral(0.015)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235950322	235950322	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014521.2	+1	reviewed	p.L303	0.378	100	0%	55	23.6%	7	57.1%	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236817478	236817478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037131.1	+1	validated	p.A418T	0.995	82	0%	103	29.1%	10	40%	benign(0.002)	tolerated(0.31)	neutral(0.027)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GBX2	2637	genome.wustl.edu	37	2	237074797	237074797	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001485.2	-1	validated	p.K269	1.000	49	0%	44	15.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
GBX2	2637	genome.wustl.edu	37	2	237074815	237074815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001485.2	-1	validated	p.E263D	1.000	39	0%	42	11.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
IQCA1	79781	genome.wustl.edu	37	2	237233331	237233331	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024726.3	-1	provisional	p.*823Y	0.011	23	0%	27	25.9%	0	-	-	-	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237240011	237240011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024726.3	-1	provisional	p.E788D	0.761	155	0%	187	28.9%	0	-	benign(0.229)	tolerated(0.07)	neutral(0.342)	NULL
LRRFIP1	9208	genome.wustl.edu	37	2	238671280	238671280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001137552.1	+1	validated	p.I308	0.815	62	0%	34	52.9%	17	35.2%	-	-	-	HMMPfam_DUF2051
LRRFIP1	9208	genome.wustl.edu	37	2	238681557	238681557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001137550.1	+1	validated	p.S559Y	1.000	126	0%	111	26.1%	3	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_DUF2051
RBM44	375316	genome.wustl.edu	37	2	238726362	238726362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080504.2	+1	validated	p.S268Y	0.879	98	0%	101	25.7%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
RBM44	375316	genome.wustl.edu	37	2	238738021	238738021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080504.2	+1	validated	p.S922L	0.000	293	0%	337	27.6%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
PER2	8864	genome.wustl.edu	37	2	239184432	239184432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022817.2	-1	reviewed	p.T134A	1.000	54	0%	76	31.6%	2	0%	benign(0.343)	deleterious(0.01)	deleterious(0.514)	NULL
ASB1	51665	genome.wustl.edu	37	2	239353170	239353170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040445.1	+1	reviewed	p.T228A	0.341	62	0%	51	21.6%	16	37.5%	possibly_damaging(0.452)	tolerated(0.65)	neutral(0.151)	superfamily_ANK
HDAC4	9759	genome.wustl.edu	37	2	240056275	240056275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006037.3	-1	reviewed	p.S348L	0.997	22	0%	26	19.2%	7	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241492374	241492374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016552.2	-1	validated	p.R57Q	0.013	44	0%	53	30.2%	11	0%	probably_damaging(0.999)	tolerated(0.48)	deleterious(0.501)	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
CAPN10	11132	genome.wustl.edu	37	2	241555883	241555883	+	Missense_Mutation	SNP	A	A	T	rs185770929	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023089.1	+1	reviewed	p.I118F	0.010	102	0%	213	22.5%	7	42.8%	possibly_damaging(0.873)	-	-	NULL
C2orf54	79919	genome.wustl.edu	37	2	241831100	241831100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085437.1	-1	validated	p.F199V	0.375	16	0%	24	37.5%	11	45.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PASK	23178	genome.wustl.edu	37	2	242078136	242078136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015148.2	-1	validated	p.R225H	0.002	65	0%	69	26.1%	4	75%	benign(0.372)	deleterious(0.03)	deleterious(0.483)	HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
D2HGDH	728294	genome.wustl.edu	37	2	242695381	242695381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152783.3	+1	reviewed	p.A420T	0.000	6	0.000	13	0.538	56	46.4%	benign(0.003)	tolerated(0.06)	neutral(0.323)	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
CHL1	10752	genome.wustl.edu	37	3	369855	369855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006614.2	+1	reviewed	p.S68L	0.000	257	0%	260	28.5%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	370022	370022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006614.2	+1	reviewed	p.E124*	1.000	227	0.4%	241	27.4%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	424186	424186	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006614.2	+1	reviewed	p.E670*	0.746	398	0%	289	16.3%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN6	27255	genome.wustl.edu	37	3	1262436	1262436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014461.2	+1	reviewed	p.L41V	0.002	299	0%	395	18.5%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1414624	1414624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014461.2	+1	reviewed	p.D591N	1.000	156	0%	167	19.8%	0	-	possibly_damaging(0.628)	deleterious(0.02)	deleterious(0.602)	superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726
CNTN4	152330	genome.wustl.edu	37	3	2777972	2777972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175607.1	+1	reviewed	p.E43D	1.000	347	0%	244	22.5%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN4	152330	genome.wustl.edu	37	3	3078896	3078896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175607.1	+1	reviewed	p.A659V	1.000	329	0%	361	30.7%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN4	152330	genome.wustl.edu	37	3	3095642	3095642	+	Missense_Mutation	SNP	G	G	A	rs186491711	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175607.1	+1	reviewed	p.R988Q	1.000	154	0%	125	20%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	superfamily_Fibronectin type III
IL5RA	3568	genome.wustl.edu	37	3	3139722	3139722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000564.3	-1	reviewed	p.E181*	1.000	149	0%	124	25%	0	-	-	-	-	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III
CRBN	51185	genome.wustl.edu	37	3	3209330	3209330	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424814	-1	known	p.R221K	1.000	227	0%	160	26.3%	2	0%	-	-	-	HMMPfam_LON,HMMSmart_SM00464
SETMAR	6419	genome.wustl.edu	37	3	4358024	4358024	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006515.3	+1	validated	p.E383	0.842	12	0%	12	50%	22	45.4%	-	-	-	NULL
BHLHE40	8553	genome.wustl.edu	37	3	5023150	5023150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003670.2	+1	reviewed	p.I111T	1.000	493	0%	372	24.7%	117	51.2%	benign(0.001)	tolerated(0.87)	neutral(0.001)	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
GRM7	2917	genome.wustl.edu	37	3	7456755	7456755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181874.2	+1	reviewed	p.R360I	1.000	117	0%	127	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM7	2917	genome.wustl.edu	37	3	7728080	7728080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181874.2	+1	reviewed	p.S912Y	1.000	78	0%	70	27.1%	0	-	benign(0.303)	tolerated(0.16)	neutral(0.153)	NULL
C3orf32	51066	genome.wustl.edu	37	3	8675472	8675472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000413305	-1	known	p.R156Q	0.360	18	0%	10	40%	0	-	unknown(0)	-	-	NULL
SRGAP3	9901	genome.wustl.edu	37	3	9146367	9146367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014850.2	-1	validated	p.K140N	1.000	52	0%	62	27.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAMK1	8536	genome.wustl.edu	37	3	9801418	9801418	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000421120	-1	known	p.A101T	0.986	207	0%	147	28.6%	22	13.6%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SYN2	6854	genome.wustl.edu	37	3	12232023	12232023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000341648	+1	known	p.F480L	1.000	379	0%	409	28.1%	0	-	unknown(0)	tolerated(0.67)	-	NULL
RAF1	5894	genome.wustl.edu	37	3	12632412	12632412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002880.3	-1	reviewed	p.I419V	0.999	120	0%	125	12.8%	70	22.8%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CHCHD4	131474	genome.wustl.edu	37	3	14154407	14154407	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144636.2	-1	validated	p.E150*	1.000	37	0%	41	24.4%	19	52.6%	-	-	-	NULL
XPC	7508	genome.wustl.edu	37	3	14206335	14206335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004628.4	-1	reviewed	p.R293Q	0.101	76	0%	173	25.4%	1	0%	probably_damaging(0.982)	tolerated(0.1)	deleterious(0.713)	NULL
GRIP2	80852	genome.wustl.edu	37	3	14558697	14558697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080423.1	-1	provisional	p.S492L	1.000	29	0%	14	28.6%	1	0%	-	-	-	NULL
C3orf19	51244	genome.wustl.edu	37	3	14700409	14700409	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016474.4	+1	validated	p.E94*	1.000	50	0%	48	10.4%	2	0%	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14861959	14861959	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152536.3	+1	validated	p.E461*	0.981	19	0%	30	23.3%	0	-	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14862325	14862325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152536.3	+1	validated	p.L583I	0.996	61	0%	92	28.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
NR2C2	7182	genome.wustl.edu	37	3	15073922	15073922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003298.3	+1	validated	p.V402M	1.000	198	0%	215	31.2%	2	50%	probably_damaging(0.954)	tolerated(0.11)	deleterious(0.669)	superfamily_Nuclear receptor ligand-binding domain
HACL1	26061	genome.wustl.edu	37	3	15605035	15605035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012260.2	-1	validated	p.L512V	1.000	116	0%	99	11.1%	16	31.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TPP_enzyme_C,superfamily_SSF52518
HACL1	26061	genome.wustl.edu	37	3	15628080	15628080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012260.2	-1	validated	p.F137L	1.000	132	0%	109	23.9%	1	0%	benign(0.199)	tolerated(0.48)	neutral(0.029)	HMMPfam_TPP_enzyme_N,superfamily_SSF52518
BTD	686	genome.wustl.edu	37	3	15683557	15683557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000060.2	+1	reviewed	p.D151G	1.000	39	0%	37	32.4%	26	30.7%	probably_damaging(0.976)	tolerated(0.29)	neutral(0.447)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
ANKRD28	23243	genome.wustl.edu	37	3	15836786	15836786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015199.2	-1	provisional	p.G19R	1.000	278	0%	165	26.7%	3	0%	benign(0.085)	tolerated(1)	neutral(0.006)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16252734	16252734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054110.4	+1	validated	p.E395K	1.000	56	0%	55	21.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53448
GALNTL2	117248	genome.wustl.edu	37	3	16254226	16254226	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054110.4	+1	validated	p.E450*	0.999	87	0%	71	21.1%	0	-	-	-	-	superfamily_SSF53448
OXNAD1	92106	genome.wustl.edu	37	3	16343361	16343361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138381.2	+1	validated	p.E221K	1.000	125	0%	86	12.8%	4	0%	possibly_damaging(0.722)	tolerated(0.05)	deleterious(0.607)	HMMPfam_NAD_binding_1,superfamily_SSF52343
RFTN1	23180	genome.wustl.edu	37	3	16364886	16364886	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015150.1	-1	validated	p.S443	0.020	96	0%	85	29.4%	12	8.3%	-	-	-	NULL
RFTN1	23180	genome.wustl.edu	37	3	16475459	16475459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015150.1	-1	validated	p.F77L	0.802	120	0%	128	21.1%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PLCL2	23228	genome.wustl.edu	37	3	17051778	17051778	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015184.5	+1	validated	p.E188*	1.000	196	0%	111	31.5%	1	0%	-	-	-	superfamily_SSF47473
PLCL2	23228	genome.wustl.edu	37	3	17052011	17052011	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000419842	+1	known	p.P9Q	1.000	214	0%	124	23.4%	0	-	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
TBC1D5	9779	genome.wustl.edu	37	3	17418096	17418096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134381.1	-1	validated	p.E208K	1.000	136	0%	123	14.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D5	9779	genome.wustl.edu	37	3	17444704	17444704	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134381.1	-1	validated	p.R160*	1.000	57	0%	36	25%	0	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
SATB1	6304	genome.wustl.edu	37	3	18435961	18435961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001131010.1	-1	validated	p.R400I	1.000	243	0%	193	22.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CUT
KCNH8	131096	genome.wustl.edu	37	3	19492658	19492659	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144633.2	+1	reviewed	p.P530fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_cNMP_binding
KCNH8	131096	genome.wustl.edu	37	3	19556906	19556906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144633.2	+1	reviewed	p.S843Y	1.000	103	0%	106	30.2%	0	-	possibly_damaging(0.455)	tolerated(0.2)	neutral(0.198)	NULL
ZNF385D	79750	genome.wustl.edu	37	3	21706453	21706453	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024697.2	-1	validated	p.S30	1.000	91	1.1%	91	29.7%	2	0%	-	-	-	NULL
NEK10	152110	genome.wustl.edu	37	3	27343200	27343200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199347.2	-1	validated	p.F385L	1.000	26	0%	18	22.2%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	superfamily_ARM repeat
SLC4A7	9497	genome.wustl.edu	37	3	27450956	27450956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003615.3	-1	validated	p.D602G	1.000	388	0%	350	23.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HCO3_cotransp
SLC4A7	9497	genome.wustl.edu	37	3	27453232	27453232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003615.3	-1	validated	p.R547I	1.000	77	0%	57	31.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Phoshotransferase/anion transport protein
SLC4A7	9497	genome.wustl.edu	37	3	27473127	27473127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003615.3	-1	validated	p.R262Q	1.000	215	0%	177	27.1%	0	-	benign(0.374)	tolerated(0.17)	neutral(0.178)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
GADL1	339896	genome.wustl.edu	37	3	30885899	30885899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207359.2	-1	validated	p.C237*	1.000	760	0%	581	29.8%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ZNF860	344787	genome.wustl.edu	37	3	32032128	32032128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001137674.1	+1	provisional	p.F519L	0.590	288	0%	294	28.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CNOT10	25904	genome.wustl.edu	37	3	32761719	32761719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015442.1	+1	provisional	p.K286N	1.000	213	0%	267	31.5%	8	75%	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_TPR-like
CCR4	1233	genome.wustl.edu	37	3	32995828	32995828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005508.4	+1	reviewed	p.F305C	0.958	78	0%	92	21.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
SUSD5	26032	genome.wustl.edu	37	3	33195119	33195119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015551.1	-1	validated	p.E335D	0.001	138	0%	133	28.6%	0	-	possibly_damaging(0.636)	tolerated(0.49)	neutral(0.233)	NULL
FBXL2	25827	genome.wustl.edu	37	3	33425643	33425643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012157.3	+1	reviewed	p.E372K	1.000	64	0%	45	37.8%	0	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	superfamily_SSF52047
CLASP2	23122	genome.wustl.edu	37	3	33576784	33576784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015097.1	-1	validated	p.F1243C	1.000	141	0%	111	31.5%	0	-	unknown(0)	deleterious(0.01)	-	superfamily_ARM repeat
CLASP2	23122	genome.wustl.edu	37	3	33633914	33633914	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015097.1	-1	validated	p.R681*	1.000	116	0%	85	15.3%	0	-	-	-	-	NULL
PDCD6IP	10015	genome.wustl.edu	37	3	33883532	33883532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013374.4	+1	validated	p.E442G	1.000	264	0%	184	24.5%	2	0%	benign(0.239)	tolerated(0.13)	neutral(0.277)	NULL
STAC	6769	genome.wustl.edu	37	3	36484881	36484881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003149.1	+1	provisional	p.S46Y	1.000	116	0%	128	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAC	6769	genome.wustl.edu	37	3	36526507	36526507	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003149.1	+1	provisional	p.L176	1.000	111	0%	89	22.5%	0	-	-	-	-	NULL
DCLK3	85443	genome.wustl.edu	37	3	36757005	36757005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033403.1	-1	validated	p.K587N	1.000	226	0%	180	21.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TRANK1	9881	genome.wustl.edu	37	3	36874155	36874155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014831.2	-1	provisional	p.L1713V	0.080	251	0%	153	33.3%	3	66.6%	possibly_damaging(0.933)	deleterious(0.01)	deleterious(0.784)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36897168	36897168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014831.2	-1	provisional	p.E755*	1.000	485	0%	427	29%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TRANK1	9881	genome.wustl.edu	37	3	36898545	36898545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014831.2	-1	provisional	p.E296K	1.000	158	0%	127	26%	0	-	possibly_damaging(0.722)	tolerated(0.09)	deleterious(0.558)	NULL
LRRFIP2	9209	genome.wustl.edu	37	3	37107798	37107798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006309.2	-1	validated	p.E495*	1.000	250	0.4%	240	27.5%	0	-	-	-	-	HMMPfam_DUF2051
GOLGA4	2803	genome.wustl.edu	37	3	37360677	37360677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002078.4	+1	reviewed	p.V513I	0.006	279	0%	206	29.6%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37365881	37365881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002078.4	+1	reviewed	p.R835I	0.074	298	0%	270	25.2%	1	0%	possibly_damaging(0.852)	tolerated(0.17)	neutral(0.387)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37366149	37366149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002078.4	+1	reviewed	p.I924M	0.775	259	0%	220	27.3%	2	0%	possibly_damaging(0.81)	tolerated(0.06)	deleterious(0.627)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37366220	37366220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002078.4	+1	reviewed	p.K948T	1.000	294	0%	280	28.9%	2	100%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
ITGA9	3680	genome.wustl.edu	37	3	37560751	37560751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002207.2	+1	reviewed	p.D381A	1.000	38	0%	46	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
ITGA9	3680	genome.wustl.edu	37	3	37826475	37826475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002207.2	+1	reviewed	p.S932L	1.000	72	0%	42	28.6%	0	-	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	superfamily_SSF69179
DLEC1	9940	genome.wustl.edu	37	3	38151764	38151764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007337.2	+1	reviewed	p.K1145N	0.000	87	0%	94	25.5%	0	-	benign(0.249)	tolerated(0.24)	neutral(0.063)	NULL
OXSR1	9943	genome.wustl.edu	37	3	38293863	38293863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005109.2	+1	reviewed	p.R497*	1.000	246	0%	204	29.9%	6	66.6%	-	-	-	NULL
EXOG	9941	genome.wustl.edu	37	3	38565654	38565654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005107.3	+1	reviewed	p.D303A	0.491	290	0%	224	32.6%	0	-	benign(0.183)	tolerated(0.07)	neutral(0.336)	NULL
SCN5A	6331	genome.wustl.edu	37	3	38640473	38640473	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099404.1	-1	reviewed	p.F653	0.942	52	0%	48	10.4%	0	-	-	-	-	NULL
SCN5A	6331	genome.wustl.edu	37	3	38651281	38651281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099404.1	-1	reviewed	p.S293F	0.997	39	0%	27	22.2%	0	-	benign(0.223)	tolerated(0.1)	neutral(0.308)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN10A	6336	genome.wustl.edu	37	3	38752383	38752383	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006514.2	-1	validated	p.T1365	0.854	29	0%	41	12.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38798213	38798213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006514.2	-1	validated	p.K414N	1.000	208	0%	218	25.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38927619	38927619	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014139.2	-1	validated	p.R982	0.533	194	0%	154	29.9%	0	-	-	-	-	HMMPfam_Na_trans_assoc
SCN11A	11280	genome.wustl.edu	37	3	38938404	38938404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014139.2	-1	validated	p.E779K	0.000	223	0%	122	26.2%	0	-	benign(0.033)	deleterious(0.01)	neutral(0.407)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38950678	38950678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014139.2	-1	validated	p.R370H	0.030	300	0%	237	24.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38967001	38967001	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014139.2	-1	validated	e5-1	0.567	120	0%	116	16.4%	0	-	-	-	-	-
WDR48	57599	genome.wustl.edu	37	3	39104556	39104556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020839.2	+1	provisional	p.R22*	1.000	141	0%	208	27.4%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR48	57599	genome.wustl.edu	37	3	39116415	39116415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020839.2	+1	provisional	p.C291G	1.000	71	0%	82	28%	1	100%	benign(0.378)	tolerated(0.54)	neutral(0.128)	superfamily_WD40 repeat-like
GORASP1	64689	genome.wustl.edu	37	3	39140339	39140339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031899.2	-1	reviewed	p.A321V	0.025	96	0%	61	24.6%	25	28%	unknown(0)	tolerated(0.89)	-	HMMPfam_GRASP55_65
TTC21A	199223	genome.wustl.edu	37	3	39152437	39152437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105513.2	+1	validated	p.L122F	1.000	50	0%	28	21.4%	0	-	benign(0.008)	tolerated(0.57)	neutral(0.006)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC21A	199223	genome.wustl.edu	37	3	39178516	39178516	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105513.2	+1	validated	p.G1082	0.678	105	0%	88	10.2%	6	33.3%	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39226930	39226930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194293.2	-1	provisional	p.S1336N	0.011	48	0%	48	12.5%	0	-	benign(0.202)	deleterious(0.02)	neutral(0.403)	NULL
ULK4	54986	genome.wustl.edu	37	3	41439606	41439606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017886.2	-1	validated	p.K1214N	0.964	217	0%	244	26.6%	1	0%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	superfamily_ARM-type_fold
ULK4	54986	genome.wustl.edu	37	3	41756761	41756761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017886.2	-1	validated	p.E868K	0.947	431	0%	321	23.4%	1	100%	benign(0.059)	tolerated(0.21)	neutral(0.048)	NULL
ULK4	54986	genome.wustl.edu	37	3	41841695	41841695	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017886.2	-1	validated	p.E647*	1.000	557	0%	555	24.3%	0	-	-	-	-	superfamily_ARM-type_fold
TRAK1	22906	genome.wustl.edu	37	3	42230609	42230609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042646.1	+1	validated	p.R228Q	1.000	76	0%	77	22.1%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_HAP1_N
NKTR	4820	genome.wustl.edu	37	3	42675174	42675174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005385.3	+1	reviewed	p.E292D	1.000	218	0%	278	32.4%	1	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
NKTR	4820	genome.wustl.edu	37	3	42678833	42678833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005385.3	+1	reviewed	p.R546Q	0.139	217	0%	267	18.4%	1	0%	unknown(0)	deleterious(0.04)	-	NULL
CCDC13	152206	genome.wustl.edu	37	3	42751220	42751220	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144719.3	-1	validated	p.L648	0.960	91	0%	83	14.5%	0	-	-	-	-	NULL
ZNF662	389114	genome.wustl.edu	37	3	42949563	42949563	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134656.1	+1	validated	p.W47*	0.993	62	0%	94	31.9%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF662	389114	genome.wustl.edu	37	3	42956031	42956031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134656.1	+1	validated	p.E182*	0.001	125	0%	108	21.3%	2	0%	-	-	-	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956704	42956704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134656.1	+1	validated	p.R406I	1.000	158	0%	127	29.1%	1	0%	benign(0.022)	deleterious(0)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ABHD5	51099	genome.wustl.edu	37	3	43743739	43743739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016006.4	+1	reviewed	p.R56C	0.002	230	0%	225	29.8%	1	0%	benign(0.003)	tolerated(0.12)	neutral(0.261)	superfamily_SSF53474
C3orf23	285343	genome.wustl.edu	37	3	44434423	44434423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173826.3	+1	validated	p.R217C	1.000	291	0%	207	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3orf23	285343	genome.wustl.edu	37	3	44441956	44441956	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173826.3	+1	validated	p.L332*	0.163	201	0%	173	30.6%	1	0%	-	-	-	NULL
ZNF167	55888	genome.wustl.edu	37	3	44611996	44611996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018651.2	+1	validated	p.K465T	0.997	207	0%	232	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF660	285349	genome.wustl.edu	37	3	44636461	44636461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173658.1	+1	provisional	p.R259Q	0.609	125	0%	176	24.4%	0	-	possibly_damaging(0.71)	deleterious(0)	deleterious(0.701)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF197	10168	genome.wustl.edu	37	3	44673645	44673645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006991.3	+1	reviewed	p.R200I	1.000	461	0%	488	20.5%	2	50%	possibly_damaging(0.896)	deleterious(0.02)	deleterious(0.736)	NULL
ZNF197	10168	genome.wustl.edu	37	3	44684547	44684547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006991.3	+1	reviewed	p.R642K	1.000	126	0%	137	35.8%	1	0%	benign(0.044)	tolerated(0.18)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF35	7584	genome.wustl.edu	37	3	44700850	44700850	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003420.3	+1	validated	p.K332T	1.000	185	0%	179	28.5%	2	50%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_C2H2 and C2HC zinc fingers
ZNF502	91392	genome.wustl.edu	37	3	44762721	44762721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134440.1	+1	validated	p.D138Y	0.002	235	0%	226	29.6%	0	-	probably_damaging(0.965)	tolerated(1)	neutral(0.407)	superfamily_SSF57667
ZNF502	91392	genome.wustl.edu	37	3	44763112	44763112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134440.1	+1	validated	p.K268T	0.000	377	0%	433	21%	0	-	unknown(0)	tolerated(0.14)	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF502	91392	genome.wustl.edu	37	3	44763333	44763333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134440.1	+1	validated	p.Q342K	0.996	245	0%	249	14.9%	0	-	probably_damaging(0.985)	tolerated(0.13)	deleterious(0.684)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF501	115560	genome.wustl.edu	37	3	44776374	44776374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145044.2	+1	validated	p.R154I	1.000	214	0%	172	30.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF501	115560	genome.wustl.edu	37	3	44776558	44776558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145044.2	+1	validated	p.E215D	1.000	164	0%	143	20.3%	0	-	probably_damaging(0.961)	deleterious(0.03)	deleterious(0.768)	superfamily_C2H2 and C2HC zinc fingers
KIF15	56992	genome.wustl.edu	37	3	44843015	44843015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020242.2	+1	validated	p.K432N	1.000	119	0%	100	37%	0	-	probably_damaging(0.981)	tolerated(0.44)	neutral(0.438)	NULL
KIF15	56992	genome.wustl.edu	37	3	44856497	44856497	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000453693	+1	known	p.R12Q	0.844	181	0%	204	29.4%	1	100%	-	-	-	NULL
ALS2CL	259173	genome.wustl.edu	37	3	46718395	46718395	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147129.2	-1	validated	p.F625	0.996	47	2.1%	33	21.2%	1	0%	-	-	-	NULL
TMIE	259236	genome.wustl.edu	37	3	46750672	46750672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147196.2	+1	reviewed	p.E90K	1.000	28	0%	34	23.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SETD2	29072	genome.wustl.edu	37	3	47125793	47125793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014159.6	-1	reviewed	p.R1826H	0.999	233	0%	185	29.2%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD2	29072	genome.wustl.edu	37	3	47161946	47161946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014159.6	-1	reviewed	p.E1394*	1.000	213	0%	167	24.6%	0	-	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47164577	47164577	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014159.6	-1	reviewed	p.E517*	1.000	210	0%	158	36.7%	0	-	-	-	-	NULL
KIF9	64147	genome.wustl.edu	37	3	47318816	47318816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134878.1	-1	validated	p.D17N	0.991	76	0%	65	23.1%	22	31.8%	possibly_damaging(0.757)	tolerated(0.35)	neutral(0.300)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSPG5	10675	genome.wustl.edu	37	3	47604228	47604228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006574.3	-1	validated	p.K494N	1.000	65	0%	115	36.5%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Neural_ProG_Cyt
SMARCC1	6599	genome.wustl.edu	37	3	47719787	47719787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003074.3	-1	validated	p.R491Q	1.000	152	0%	147	21.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SWIRM
FBXW12	285231	genome.wustl.edu	37	3	48423358	48423358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207102.2	+1	validated	p.N385T	0.000	216	0%	212	29.7%	0	-	probably_damaging(0.972)	tolerated(0.06)	deleterious(0.736)	superfamily_WD40_like
PFKFB4	5210	genome.wustl.edu	37	3	48576037	48576037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004567.2	-1	provisional	p.S176R	1.000	84	0%	49	38.8%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_6PF2K,superfamily_SSF52540
QARS	5859	genome.wustl.edu	37	3	49135854	49135854	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005051.1	-1	reviewed	p.E672	1.000	78	0%	117	30.8%	289	29.7%	-	-	-	superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C
QARS	5859	genome.wustl.edu	37	3	49136966	49136966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005051.1	-1	reviewed	p.Q501H	1.000	109	0%	121	25.6%	202	40.5%	possibly_damaging(0.654)	deleterious(0.02)	deleterious(0.613)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
CCDC36	339834	genome.wustl.edu	37	3	49292916	49292916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135197.1	+1	validated	p.R209I	0.000	124	0%	125	20%	0	-	possibly_damaging(0.861)	tolerated(0.13)	deleterious(0.586)	NULL
USP4	7375	genome.wustl.edu	37	3	49339923	49339923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003363.3	-1	validated	p.S394Y	1.000	123	0%	141	24.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
BSN	8927	genome.wustl.edu	37	3	49695089	49695089	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003458.3	+1	reviewed	p.I2700	0.133	27	0%	22	27.3%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49699166	49699166	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003458.3	+1	reviewed	p.Y3296	0.998	47	0%	35	28.6%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49701234	49701234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003458.3	+1	reviewed	p.Q3841H	0.352	33	0%	35	14.3%	0	-	possibly_damaging(0.83)	-	-	NULL
CDHR4	389118	genome.wustl.edu	37	3	49836785	49836785	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007540.2	-1	provisional	p.S45	0.003	21	0%	24	16.7%	0	-	-	-	-	NULL
MST1R	4486	genome.wustl.edu	37	3	49940837	49940837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002447.2	-1	validated	p.A69D	0.864	19	0%	21	28.6%	1	100%	probably_damaging(0.99)	tolerated(0.26)	deleterious(0.476)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
RBM6	10180	genome.wustl.edu	37	3	50112625	50112625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000421682	+1	known	p.F32L	1.000	64	0%	54	22.2%	2	50%	benign(0.094)	-	-	NULL
ZMYND10	51364	genome.wustl.edu	37	3	50379042	50379042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015896.2	-1	validated	p.R404C	1.000	16	0%	35	25.7%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1
CACNA2D2	9254	genome.wustl.edu	37	3	50421734	50421734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005505.1	-1	reviewed	p.S182Y	0.783	79	0%	88	26.1%	0	-	benign(0.418)	deleterious(0.03)	deleterious(0.500)	HMMPfam_VWA_N
MAPKAPK3	7867	genome.wustl.edu	37	3	50677893	50677893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004635.3	+1	reviewed	p.N106D	1.000	185	0%	202	27.2%	23	47.8%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK3	1795	genome.wustl.edu	37	3	51102026	51102026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004947.3	+1	validated	p.E155*	1.000	180	0%	135	34.8%	2	0%	-	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51264764	51264764	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004947.3	+1	validated	p.S476	0.983	357	0%	309	29.1%	0	-	-	-	-	NULL
VPRBP	9730	genome.wustl.edu	37	3	51500836	51500836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014703.2	-1	validated	p.D82Y	1.000	231	0%	312	20.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
IQCF2	389123	genome.wustl.edu	37	3	51895692	51895692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203424.1	+1	validated	p.R4*	0.000	81	0%	83	41%	0	-	-	-	-	NULL
PARP3	10039	genome.wustl.edu	37	3	51978481	51978481	+	Missense_Mutation	SNP	C	C	T	rs146036726	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003931.2	+1	reviewed	p.R137W	0.954	64	0%	61	16.4%	5	60%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_WGR,HMMSmart_WGR
GLYCTK	132158	genome.wustl.edu	37	3	52325015	52325015	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145262.3	+1	reviewed	p.F139	0.600	18	0%	27	44.4%	6	33.3%	-	-	-	superfamily_GckA/TtuD-like
DNAH1	25981	genome.wustl.edu	37	3	52404144	52404144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015512.4	+1	validated	p.R2053W	0.993	36	0%	37	40.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PHF7	51533	genome.wustl.edu	37	3	52455724	52455724	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016483.4	+1	reviewed	p.E212*	1.000	75	0%	78	30.8%	1	0%	-	-	-	NULL
NISCH	11188	genome.wustl.edu	37	3	52492695	52492695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007184.3	+1	validated	p.K65N	1.000	46	0%	58	29.3%	0	-	probably_damaging(0.997)	tolerated(0.35)	deleterious(0.487)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PBRM1	55193	genome.wustl.edu	37	3	52637703	52637703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018165.4	-1	validated	p.F839L	1.000	128	0%	111	27.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_BROMO,superfamily_Bromodomain
GLT8D1	55830	genome.wustl.edu	37	3	52730674	52730674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010983.1	-1	reviewed	p.S111P	1.000	97	0%	114	26.3%	44	40.9%	benign(0.286)	tolerated(0.24)	neutral(0.126)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
NEK4	6787	genome.wustl.edu	37	3	52799941	52799941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003157.3	-1	validated	p.D210Y	1.000	339	0%	314	23.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NEK4	6787	genome.wustl.edu	37	3	52802354	52802354	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003157.3	-1	validated	p.Q120	1.000	399	0.3%	354	32.5%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITIH1	3697	genome.wustl.edu	37	3	52812467	52812467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002215.2	+1	reviewed	p.E84K	1.000	139	0%	141	27.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00609,HMMPfam_VIT
ITIH1	3697	genome.wustl.edu	37	3	52818456	52818456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002215.2	+1	reviewed	p.R457I	1.000	32	0%	42	52.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
SFMBT1	51460	genome.wustl.edu	37	3	52962235	52962235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005158.1	-1	reviewed	p.K340N	1.000	196	0%	146	26%	4	100%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
DCP1A	55802	genome.wustl.edu	37	3	53376192	53376192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018403.5	-1	reviewed	p.L95I	1.000	61	0%	35	34.3%	0	-	-	-	-	HMMPfam_DCP1,superfamily_PH domain-like
CACNA1D	776	genome.wustl.edu	37	3	53760986	53760986	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000720.2	+1	validated	p.I747	0.900	160	0%	162	25.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53820921	53820921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000720.2	+1	validated	p.R1642Q	1.000	124	0%	112	26.8%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Ca_chan_IQ
CACNA1D	776	genome.wustl.edu	37	3	53820926	53820926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000720.2	+1	validated	p.E1644*	1.000	125	0%	120	10%	0	-	-	-	-	HMMPfam_Ca_chan_IQ
CACNA2D3	55799	genome.wustl.edu	37	3	54354505	54354505	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018398.2	+1	reviewed	p.E81*	1.000	22	0%	20	30%	0	-	-	-	-	NULL
IL17RD	54756	genome.wustl.edu	37	3	57132059	57132059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017563.3	-1	validated	p.D558N	1.000	32	0%	33	24.2%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
HESX1	8820	genome.wustl.edu	37	3	57233869	57233869	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003865.2	-1	reviewed	p.I26	0.941	102	0%	114	24.6%	0	-	-	-	-	NULL
FAM116A	201627	genome.wustl.edu	37	3	57616187	57616187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152678.2	-1	validated	p.Q527H	1.000	88	0%	137	20.4%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_DUF1630
SLMAP	7871	genome.wustl.edu	37	3	57847784	57847784	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007159.2	+1	validated	p.E313*	1.000	251	0%	256	25.4%	0	-	-	-	-	NULL
SLMAP	7871	genome.wustl.edu	37	3	57893682	57893682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007159.2	+1	validated	p.E491K	1.000	123	0%	106	37.7%	7	14.2%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
FLNB	2317	genome.wustl.edu	37	3	58140614	58140614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001457.3	+1	reviewed	p.K2244T	1.000	40	0%	50	36%	27	59.2%	benign(0.389)	deleterious(0.02)	deleterious(0.508)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
PXK	54899	genome.wustl.edu	37	3	58351613	58351613	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017771.3	+1	provisional	p.R39*	1.000	124	0%	131	32.8%	0	-	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
FEZF2	55079	genome.wustl.edu	37	3	62355839	62355839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018008.3	-1	validated	p.K433N	1.000	90	0%	65	26.2%	0	-	possibly_damaging(0.45)	tolerated(0.16)	neutral(0.207)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CADPS	8618	genome.wustl.edu	37	3	62739116	62739116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003716.3	-1	reviewed	p.Q296H	1.000	103	0%	107	26.2%	0	-	possibly_damaging(0.802)	deleterious(0)	deleterious(0.746)	NULL
ADAMTS9	56999	genome.wustl.edu	37	3	64589974	64589974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182920.1	-1	reviewed	p.A1170T	0.697	79	0%	81	32.1%	1	0%	benign(0.032)	tolerated(0.56)	neutral(0.008)	NULL
MAGI1	9223	genome.wustl.edu	37	3	65376975	65376975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033057.1	-1	reviewed	p.R753Q	0.997	76	0%	72	27.8%	4	0%	possibly_damaging(0.524)	tolerated(0.37)	neutral(0.195)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66432005	66432005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015541.2	-1	validated	p.V890I	0.000	189	0%	125	22.4%	20	45%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66436591	66436591	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015541.2	-1	validated	p.E535*	1.000	180	0%	100	30%	8	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KBTBD8	84541	genome.wustl.edu	37	3	67054645	67054645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032505.2	+1	validated	p.E392D	1.000	275	0%	265	20.8%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FAM19A1	407738	genome.wustl.edu	37	3	68466566	68466566	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213609.2	+1	reviewed	p.V85	0.008	248	0%	196	28.1%	0	-	-	-	-	NULL
FAM19A4	151647	genome.wustl.edu	37	3	68802149	68802149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005527.1	-1	reviewed	p.G51W	1.000	86	0%	74	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMF1	7110	genome.wustl.edu	37	3	69082718	69082718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007114.2	-1	validated	p.K794N	1.000	126	0%	120	23.3%	5	40%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TMF1	7110	genome.wustl.edu	37	3	69097037	69097037	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007114.2	-1	validated	p.A273	0.833	104	0%	97	40.2%	1	100%	-	-	-	NULL
TMF1	7110	genome.wustl.edu	37	3	69101175	69101175	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007114.2	-1	validated	p.Q21	1.000	75	0%	104	43.3%	4	50%	-	-	-	NULL
UBA3	9039	genome.wustl.edu	37	3	69106448	69106448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003968.3	-1	reviewed	p.R308I	1.000	399	0.3%	404	36.6%	11	36.3%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_UBACT,superfamily_Activating enzymes of the ubiquitin-like proteins
ARL6IP5	10550	genome.wustl.edu	37	3	69153667	69153667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000412089	+1	known	p.E136*	1.000	114	0%	96	30.2%	87	36.7%	-	-	-	NULL
MITF	4286	genome.wustl.edu	37	3	70014163	70014163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198159.2	+1	reviewed	p.D443N	1.000	195	0%	173	25.4%	3	33.3%	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	NULL
FOXP1	27086	genome.wustl.edu	37	3	71021728	71021728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032682.4	-1	reviewed	p.R544*	1.000	208	0%	209	27.3%	6	0%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
RYBP	23429	genome.wustl.edu	37	3	72428561	72428561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012234.4	-1	validated	p.S49F	1.000	243	0%	154	24%	2	100%	unknown(0)	deleterious(0)	-	NULL
SHQ1	55164	genome.wustl.edu	37	3	72890312	72890312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018130.2	-1	validated	p.E124*	1.000	279	0%	239	26.4%	2	0%	-	-	-	NULL
CNTN3	5067	genome.wustl.edu	37	3	74350823	74350823	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020872.1	-1	validated	p.S640	0.045	152	0%	112	30.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ROBO2	6092	genome.wustl.edu	37	3	77656968	77656968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128929.1	+1	reviewed	p.E1033*	1.000	100	0%	148	24.3%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78649334	78649334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002941.3	-1	reviewed	p.R1624*	1.000	340	0%	255	65.1%	7	57.1%	-	-	-	NULL
VGLL3	389136	genome.wustl.edu	37	3	87027768	87027768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016206.2	-1	validated	p.E104G	1.000	167	0.6%	147	29.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00711,HMMPfam_Vg_Tdu
POU1F1	5449	genome.wustl.edu	37	3	87309172	87309172	+	Nonsense_Mutation	SNP	C	C	A	rs104893760	byCluster	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122757.1	-1	reviewed	p.E276*	1.000	101	0%	112	9.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
HTR1F	3355	genome.wustl.edu	37	3	88040624	88040624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000866.3	+1	validated	p.S242F	0.900	173	0%	152	26.3%	0	-	possibly_damaging(0.673)	deleterious(0.03)	deleterious(0.603)	HMMPfam_7tm_1,superfamily_SSF81321
EPHA3	2042	genome.wustl.edu	37	3	89468468	89468468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005233.5	+1	reviewed	p.L668M	1.000	137	0%	179	17.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PROS1	5627	genome.wustl.edu	37	3	93646100	93646100	+	Silent	SNP	C	C	T	rs6121	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000313.3	-1	reviewed	p.P76	0.052	191	0%	110	21.8%	0	-	-	-	-	HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA
LOC391556	391556	genome.wustl.edu	37	3	96285498	96285498	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342412.1	+1	model	p.E100*	1.000	93	0%	68	30.9%	0	-	-	-	-	NULL
EPHA6	285220	genome.wustl.edu	37	3	96706234	96706234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080448.2	+1	provisional	p.N171H	1.000	433	0%	267	25.8%	2	0%	benign(0.29)	tolerated(0.1)	neutral(0.376)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
OR5H14	403273	genome.wustl.edu	37	3	97869149	97869149	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000394193	+1	known	e1+2	0.007	89	0%	85	29.4%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	-
OR5H6	79295	genome.wustl.edu	37	3	97983860	97983860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005479.1	+1	provisional	p.K244N	0.027	188	0.5%	157	21%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_7tm_1,superfamily_SSF81321
DCBLD2	131566	genome.wustl.edu	37	3	98544180	98544180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080927.3	-1	validated	p.N201S	0.927	50	0%	59	23.7%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
COL8A1	1295	genome.wustl.edu	37	3	99513629	99513629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001850.3	+1	reviewed	p.P295H	1.000	35	0%	35	14.3%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Collagen
FILIP1L	11259	genome.wustl.edu	37	3	99568899	99568899	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182909.2	-1	validated	p.E541*	1.000	277	0%	261	23.4%	0	-	-	-	-	HMMPfam_CortBP2
FILIP1L	11259	genome.wustl.edu	37	3	99569252	99569252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182909.2	-1	validated	p.R423I	1.000	466	0%	395	31.4%	0	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	superfamily_Prefoldin,HMMPfam_CortBP2
FILIP1L	11259	genome.wustl.edu	37	3	99569454	99569454	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182909.2	-1	validated	p.E356*	1.000	680	0.1%	585	28.4%	1	0%	-	-	-	superfamily_Prefoldin,HMMPfam_CortBP2
C3orf26	84319	genome.wustl.edu	37	3	99886630	99886630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032359.3	+1	validated	p.S155L	0.996	195	0%	159	24.5%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
LNP1	348801	genome.wustl.edu	37	3	100170629	100170629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085451.1	+1	validated	p.E75*	0.359	235	0%	240	29.2%	3	0%	-	-	-	NULL
GPR128	84873	genome.wustl.edu	37	3	100413629	100413629	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032787.2	+1	validated	p.V726	0.997	134	0%	115	26.1%	0	-	-	-	-	HMMPfam_7tm_2
RG9MTD1	54931	genome.wustl.edu	37	3	101283685	101283685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017819.2	+1	provisional	p.F20L	0.001	281	0%	294	34.7%	3	33.3%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101284644	101284644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017819.2	+1	provisional	p.K340T	0.997	116	0%	128	39.1%	9	66.6%	possibly_damaging(0.667)	deleterious(0.03)	deleterious(0.601)	HMMPfam_tRNA_m1G_MT
ZBTB11	27107	genome.wustl.edu	37	3	101370125	101370125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014415.3	-1	validated	p.I1016S	1.000	199	0%	253	25.7%	9	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CCDC54	84692	genome.wustl.edu	37	3	107096631	107096631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032600.2	+1	provisional	p.L66R	0.024	269	0%	299	30.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CCDC54	84692	genome.wustl.edu	37	3	107097154	107097154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032600.2	+1	provisional	p.Y240*	0.576	391	0.5%	390	34.4%	0	-	-	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107491558	107491558	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142568.1	+1	validated	p.E330D	0.026	389	0%	285	26%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
BBX	56987	genome.wustl.edu	37	3	107491739	107491739	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142568.1	+1	validated	p.E391*	1.000	456	0%	357	30.3%	0	-	-	-	-	NULL
CD47	961	genome.wustl.edu	37	3	107778358	107778358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001777.3	-1	reviewed	p.G211D	1.000	135	0%	146	19.9%	69	43.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CD47
KIAA1524	57650	genome.wustl.edu	37	3	108279658	108279658	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020890.2	-1	validated	p.A555	0.928	337	0%	299	20.1%	3	33.3%	-	-	-	NULL
DZIP3	9666	genome.wustl.edu	37	3	108353789	108353789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014648.3	+1	validated	p.K296N	1.000	210	0%	167	18%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
MORC1	27136	genome.wustl.edu	37	3	108688533	108688533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014429.3	-1	reviewed	p.K863E	1.000	202	0%	141	15.6%	0	-	benign(0.307)	deleterious(0)	deleterious(0.540)	NULL
MORC1	27136	genome.wustl.edu	37	3	108788521	108788521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014429.3	-1	reviewed	p.R258I	1.000	283	0%	270	27%	0	-	probably_damaging(0.981)	tolerated(0.11)	deleterious(0.697)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
PVRL3	25945	genome.wustl.edu	37	3	110852559	110852559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015480.1	+1	provisional	p.E383*	1.000	123	0%	119	21.8%	0	-	-	-	-	NULL
PVRL3	25945	genome.wustl.edu	37	3	110852766	110852766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015480.1	+1	provisional	p.E452*	1.000	152	0%	118	39.8%	2	0%	-	-	-	NULL
CD96	10225	genome.wustl.edu	37	3	111366486	111366486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198196.2	+1	reviewed	p.R541I	1.000	269	0%	266	31.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111632536	111632536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134438.1	+1	validated	p.S569I	1.000	727	0%	688	30.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111667830	111667830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134438.1	+1	validated	p.L847I	1.000	130	0%	146	26.7%	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
C3orf52	79669	genome.wustl.edu	37	3	111821807	111821807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024616.2	+1	validated	p.E131K	0.011	59	0%	33	33.3%	1	100%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111921244	111921244	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183061.1	-1	validated	p.L725	0.004	251	0%	225	20.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SLC9A10	285335	genome.wustl.edu	37	3	111988784	111988784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183061.1	-1	validated	p.L252M	0.000	187	0%	172	30.2%	0	-	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	HMMPfam_Na_H_Exchanger
CD200R1	131450	genome.wustl.edu	37	3	112644021	112644021	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138806.3	-1	reviewed	p.S263	0.001	239	0%	153	28.8%	0	-	-	-	-	NULL
BOC	91653	genome.wustl.edu	37	3	113003262	113003262	+	Missense_Mutation	SNP	C	C	A	rs3814404	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033254.2	+1	validated	p.P912T	0.979	79	0%	91	14.3%	1	0%	benign(0.068)	deleterious(0.02)	neutral(0.388)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113176071	113176071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144718.3	-1	validated	p.K523N	0.002	115	0%	172	58.1%	1	100%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113187238	113187238	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144718.3	-1	validated	p.P301	0.346	99	0%	122	36.1%	5	0%	-	-	-	NULL
SIDT1	54847	genome.wustl.edu	37	3	113295785	113295785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017699.2	+1	validated	p.H178N	1.000	482	0%	324	29%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
SIDT1	54847	genome.wustl.edu	37	3	113302263	113302263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017699.2	+1	validated	p.D252A	1.000	85	0%	58	25.9%	0	-	benign(0.002)	tolerated(0.81)	neutral(0.001)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113374106	113374106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009899.2	-1	validated	p.E2141D	1.000	233	0%	193	12.4%	0	-	possibly_damaging(0.68)	tolerated(0.56)	neutral(0.249)	NULL
ATP6V1A	523	genome.wustl.edu	37	3	113499959	113499959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001690.2	+1	reviewed	p.E49K	1.000	91	0%	86	17.4%	3	66.6%	benign(0.001)	tolerated(0.9)	-	HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase
ATP6V1A	523	genome.wustl.edu	37	3	113517124	113517124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001690.2	+1	reviewed	p.R442H	1.000	248	0%	241	22.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRAMD1C	54762	genome.wustl.edu	37	3	113649560	113649560	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017577.4	+1	validated	e11-1	1.000	229	0%	149	38.3%	0	-	-	-	-	-
KIAA1407	57577	genome.wustl.edu	37	3	113753869	113753869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020817.1	-1	predicted	p.E241K	0.996	385	0%	403	20.3%	0	-	benign(0.001)	tolerated(0.83)	neutral(0.001)	NULL
QTRTD1	79691	genome.wustl.edu	37	3	113804698	113804698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024638.2	+1	provisional	p.K399Q	0.473	289	0%	204	13.7%	0	-	possibly_damaging(0.837)	tolerated(0.09)	deleterious(0.616)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
DRD3	1814	genome.wustl.edu	37	3	113858394	113858394	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000796.3	-1	reviewed	p.R226*	1.000	273	0.4%	205	20%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF80	7634	genome.wustl.edu	37	3	113955601	113955601	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007136.3	-1	validated	p.C107	0.009	81	0%	64	25%	0	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARHGAP31	57514	genome.wustl.edu	37	3	119134282	119134282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020754.2	+1	reviewed	p.A1169V	0.642	309	0%	184	33.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119135075	119135075	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020754.2	+1	reviewed	p.V1433	1.000	427	0%	259	27.4%	1	0%	-	-	-	NULL
ADPRH	141	genome.wustl.edu	37	3	119305458	119305458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001125.2	+1	reviewed	p.S209A	0.028	114	0%	130	17.7%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
GSK3B	2932	genome.wustl.edu	37	3	119631582	119631582	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002093.3	-1	reviewed	p.I228	1.000	162	0%	110	27.3%	7	28.5%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GSK3B	2932	genome.wustl.edu	37	3	119721018	119721018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002093.3	-1	reviewed	p.E53K	1.000	798	0%	590	21.9%	3	33.3%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120973919	120973919	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014980.2	+1	validated	p.I540N	1.000	91	0%	58	25.9%	0	-	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	HMMSmart_SM00320,superfamily_WD40 repeat-like
STXBP5L	9515	genome.wustl.edu	37	3	120976080	120976080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014980.2	+1	validated	p.P578T	1.000	284	0%	201	35.8%	0	-	benign(0.275)	tolerated(0.06)	neutral(0.352)	NULL
POLQ	10721	genome.wustl.edu	37	3	121207035	121207035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199420.3	-1	validated	p.K1581N	0.002	444	0.2%	416	29.3%	0	-	benign(0.004)	tolerated(1)	-	NULL
POLQ	10721	genome.wustl.edu	37	3	121255979	121255979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199420.3	-1	validated	p.K236N	0.986	176	0%	219	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXO40	51725	genome.wustl.edu	37	3	121341804	121341804	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016298.3	+1	validated	p.R510*	1.000	122	0%	120	23.3%	0	-	-	-	-	NULL
FBXO40	51725	genome.wustl.edu	37	3	121341855	121341855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016298.3	+1	validated	p.P527S	1.000	129	0%	151	34.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO40	51725	genome.wustl.edu	37	3	121341991	121341991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016298.3	+1	validated	p.S572F	0.436	241	0%	215	26%	0	-	possibly_damaging(0.502)	tolerated(0.19)	neutral(0.217)	HMMPfam_F-box,superfamily_F-box domain
HCLS1	3059	genome.wustl.edu	37	3	121354633	121354633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005335.4	-1	validated	p.E214*	1.000	82	0%	125	29.6%	12	0%	-	-	-	HMMPfam_HS1_rep
GOLGB1	2804	genome.wustl.edu	37	3	121395762	121395762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004487.3	-1	validated	p.R3047I	1.000	125	0%	125	30.4%	12	83.3%	benign(0.17)	deleterious(0)	neutral(0.460)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121415190	121415190	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004487.3	-1	validated	p.E1389*	0.332	371	0%	301	34.2%	0	-	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121416426	121416426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004487.3	-1	validated	p.L977F	0.997	331	0%	262	26.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Spectrin repeat
GOLGB1	2804	genome.wustl.edu	37	3	121435888	121435888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004487.3	-1	validated	p.K323N	1.000	248	0%	198	30.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC15A2	6565	genome.wustl.edu	37	3	121615309	121615309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021082.3	+1	validated	p.F54L	1.000	373	0.3%	215	20.5%	0	-	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	superfamily_MFS_gen_substrate_transporter
KPNA1	3836	genome.wustl.edu	37	3	122180093	122180093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002264.3	-1	reviewed	p.R137Q	1.000	289	0%	199	32.7%	2	100%	possibly_damaging(0.921)	deleterious(0.01)	deleterious(0.776)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PARP9	83666	genome.wustl.edu	37	3	122259379	122259379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031458.2	-1	validated	p.L604V	0.999	191	0%	186	37.1%	49	44.8%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PARP15	165631	genome.wustl.edu	37	3	122334567	122334567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152615.1	+1	validated	p.R4I	0.015	113	0%	117	29.1%	0	-	benign(0.014)	-	-	NULL
PARP15	165631	genome.wustl.edu	37	3	122351038	122351038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113523.1	+1	validated	p.R515Q	0.060	126	0%	129	31%	1	0%	benign(0.037)	tolerated(0.73)	neutral(0.004)	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP14	54625	genome.wustl.edu	37	3	122423529	122423529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017554.2	+1	validated	p.K1158N	0.000	62	0%	52	28.8%	2	100%	possibly_damaging(0.802)	deleterious(0.02)	deleterious(0.685)	superfamily_Macro domain-like
ADCY5	111	genome.wustl.edu	37	3	123010203	123010203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183357.1	-1	validated	p.E1028D	1.000	44	0%	23	21.7%	1	0%	possibly_damaging(0.919)	tolerated(0.24)	neutral(0.407)	NULL
MYLK	4638	genome.wustl.edu	37	3	123426708	123426708	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053025.3	-1	reviewed	p.L761	0.947	53	0%	38	15.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYLK	4638	genome.wustl.edu	37	3	123428699	123428699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053025.3	-1	reviewed	p.A616T	0.000	208	0%	135	25.9%	0	-	benign(0.382)	tolerated(0.65)	neutral(0.125)	superfamily_Immunoglobulin
CCDC14	64770	genome.wustl.edu	37	3	123652563	123652563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022757.4	-1	validated	p.Q468H	0.948	27	0%	23	26.1%	2	0%	benign(0.095)	deleterious(0.02)	neutral(0.390)	NULL
KALRN	8997	genome.wustl.edu	37	3	123946840	123946840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024660.3	+1	reviewed	p.S24Y	1.000	256	0%	243	23.5%	0	-	benign(0.313)	tolerated(0.25)	neutral(0.135)	NULL
KALRN	8997	genome.wustl.edu	37	3	124174168	124174168	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024660.3	+1	reviewed	p.R1231*	1.000	188	0%	196	29.1%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124431974	124431974	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000354186	+1	known	p.S2725Y	0.999	149	0%	146	22.6%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC12A8	84561	genome.wustl.edu	37	3	124802800	124802800	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024628.5	-1	validated	p.F693	0.936	42	0%	31	29%	32	43.7%	-	-	-	NULL
SLC12A8	84561	genome.wustl.edu	37	3	124826370	124826370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024628.5	-1	validated	p.Q554K	0.008	256	0%	360	31.1%	5	60%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
ZNF148	7707	genome.wustl.edu	37	3	125032430	125032430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021964.2	-1	validated	p.E19K	1.000	455	0%	340	31.5%	0	-	benign(0.002)	-	-	NULL
SNX4	8723	genome.wustl.edu	37	3	125170202	125170202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003794.2	-1	reviewed	p.L418V	0.980	277	0%	273	27.8%	8	0%	possibly_damaging(0.876)	tolerated(0.14)	deleterious(0.591)	NULL
CCDC37	348807	genome.wustl.edu	37	3	126114876	126114876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182628.2	+1	validated	p.K11N	0.008	52	0%	47	25.5%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
C3orf22	152065	genome.wustl.edu	37	3	126270934	126270934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152533.1	-1	predicted	p.P41S	0.000	19	0%	26	53.8%	0	-	probably_damaging(0.974)	tolerated(0.82)	neutral(0.416)	NULL
KBTBD12	166348	genome.wustl.edu	37	3	127642779	127642779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207335.2	+1	validated	p.R292M	0.990	245	0%	285	30.5%	0	-	possibly_damaging(0.843)	tolerated(0.06)	deleterious(0.645)	NULL
KIAA1257	57501	genome.wustl.edu	37	3	128712142	128712142	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020741.2	-1	predicted	p.S2	0.002	10	0%	28	25%	0	-	-	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130174422	130174422	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000512836	+1	known	p.P486S	0.008	143	0%	167	22.2%	0	-	-	-	-	NULL
COL6A6	131873	genome.wustl.edu	37	3	130293339	130293339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102608.1	+1	provisional	p.R1173C	0.006	148	0%	125	17.6%	0	-	probably_damaging(1)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130394125	130394125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102608.1	+1	provisional	p.L2226I	0.012	50	0%	31	29%	0	-	benign(0.052)	-	-	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130463485	130463485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014602.2	-1	validated	p.R193I	1.000	287	0%	246	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ATP2C1	27032	genome.wustl.edu	37	3	130714897	130714897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001486.1	+1	reviewed	p.E690K	1.000	306	0%	232	31.5%	23	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calcium ATPase transmembrane domain M
NEK11	79858	genome.wustl.edu	37	3	130887712	130887712	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024800.4	+1	reviewed	p.E405	0.000	76	0%	45	11.1%	9	0%	-	-	-	NULL
CPNE4	131034	genome.wustl.edu	37	3	131624173	131624173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130808.1	-1	reviewed	p.D39Y	1.000	226	0%	286	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ACPP	55	genome.wustl.edu	37	3	132050547	132050547	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134194.1	+1	reviewed	p.K91N	0.000	91	0%	70	14.3%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMPfam_Acid_phosphat_A,superfamily_SSF53254
DNAJC13	23317	genome.wustl.edu	37	3	132242498	132242498	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015268.3	+1	validated	p.E2001*	1.000	305	0%	273	25.3%	1	0%	-	-	-	superfamily_ARM repeat
CCRL1	51554	genome.wustl.edu	37	3	132319451	132319451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016557.2	+1	reviewed	p.K70N	1.000	542	0%	391	14.6%	0	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_7tm_1,superfamily_SSF81321
NPHP3	27031	genome.wustl.edu	37	3	132415580	132415580	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153240.3	-1	reviewed	p.I722	0.000	181	0%	200	22%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
NPHP3	27031	genome.wustl.edu	37	3	132434005	132434005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153240.3	-1	reviewed	p.S294Y	1.000	166	0%	138	29%	0	-	possibly_damaging(0.948)	deleterious(0.03)	deleterious(0.756)	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133356909	133356909	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007027.3	-1	reviewed	p.V777	0.069	304	0%	383	25.8%	3	0%	-	-	-	NULL
CEP63	80254	genome.wustl.edu	37	3	134277079	134277079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025180.3	+1	reviewed	p.M521I	1.000	285	0%	249	28.9%	0	-	benign(0.06)	tolerated(0.27)	neutral(0.038)	NULL
KY	339855	genome.wustl.edu	37	3	134338004	134338004	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178554.4	-1	validated	p.F232	1.000	176	0%	206	38.8%	0	-	-	-	-	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
EPHB1	2047	genome.wustl.edu	37	3	134911655	134911655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004441.4	+1	reviewed	p.S707Y	1.000	77	0%	67	10.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PPP2R3A	5523	genome.wustl.edu	37	3	135720842	135720842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002718.3	+1	reviewed	p.D168N	1.000	306	0%	244	31.1%	0	-	possibly_damaging(0.535)	tolerated(0.28)	neutral(0.212)	NULL
PPP2R3A	5523	genome.wustl.edu	37	3	135722213	135722213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002718.3	+1	reviewed	p.L625I	1.000	339	0%	263	34.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MSL2	55167	genome.wustl.edu	37	3	135869997	135869997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018133.3	-1	validated	p.D576N	1.000	174	0%	153	20.9%	2	0%	benign(0.316)	deleterious(0)	deleterious(0.543)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870446	135870446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018133.3	-1	validated	p.G426V	0.994	150	0%	90	23.3%	2	0%	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870847	135870847	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018133.3	-1	validated	p.P292	0.736	169	0%	147	36.1%	6	0%	-	-	-	NULL
STAG1	10274	genome.wustl.edu	37	3	136096576	136096576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005862.2	-1	reviewed	p.R766G	1.000	84	0%	81	27.2%	1	100%	benign(0.096)	deleterious(0.03)	neutral(0.371)	superfamily_ARM-type_fold
STAG1	10274	genome.wustl.edu	37	3	136342016	136342016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005862.2	-1	reviewed	p.R35I	1.000	675	0%	660	28.5%	0	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	NULL
CLDN18	51208	genome.wustl.edu	37	3	137749826	137749826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002026.2	+1	validated	p.S210Y	1.000	225	0%	214	29.9%	0	-	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137805849	137805849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173543.2	-1	validated	p.R339I	1.000	166	0%	148	35.1%	1	0%	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	NULL
ARMC8	25852	genome.wustl.edu	37	3	137986045	137986045	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015396.3	+1	validated	p.L436	0.998	32	0%	27	22.2%	1	0%	-	-	-	superfamily_ARM-type_fold
PIK3CB	5291	genome.wustl.edu	37	3	138433507	138433507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006219.1	-1	provisional	p.V369I	0.965	406	0.2%	403	24.3%	0	-	benign(0.08)	tolerated(0.12)	neutral(0.266)	HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
PIK3CB	5291	genome.wustl.edu	37	3	138453486	138453486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006219.1	-1	provisional	p.R321Q	0.998	225	0%	201	32.8%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	HMMSmart_PI3K_C2
PIK3CB	5291	genome.wustl.edu	37	3	138453578	138453578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006219.1	-1	provisional	p.K290N	1.000	259	0%	224	27.7%	0	-	benign(0.268)	tolerated(0.49)	neutral(0.039)	superfamily_SSF54236
RBP2	5948	genome.wustl.edu	37	3	139181123	139181123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004164.2	-1	reviewed	p.F28S	1.000	305	0%	270	23%	0	-	possibly_damaging(0.656)	deleterious(0.01)	deleterious(0.637)	HMMPfam_Lipocalin,superfamily_Lipocalins
CLSTN2	64084	genome.wustl.edu	37	3	140265496	140265496	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022131.2	+1	validated	p.S549	1.000	44	0%	61	11.5%	0	-	-	-	-	NULL
RASA2	5922	genome.wustl.edu	37	3	141289819	141289819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006506.2	+1	reviewed	p.R310Q	1.000	104	0%	83	25.3%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMSmart_RasGAP
GRK7	131890	genome.wustl.edu	37	3	141497669	141497669	+	Silent	SNP	C	C	T	rs141991963	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139209.2	+1	reviewed	p.F181	0.936	52	0%	56	30.4%	0	-	-	-	-	superfamily_Kinase_like,superfamily_Regulat_G_prot_signal_superfam
ATP1B3	483	genome.wustl.edu	37	3	141626044	141626044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001679.2	+1	reviewed	p.E92K	1.000	144	0%	178	23%	21	47.6%	probably_damaging(0.968)	tolerated(0.06)	deleterious(0.732)	HMMPfam_Na_K-ATPase
XRN1	54464	genome.wustl.edu	37	3	142048297	142048297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019001.3	-1	validated	p.F1460L	1.000	93	0%	114	20.2%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_dsRNA-binding domain-like
XRN1	54464	genome.wustl.edu	37	3	142140349	142140349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019001.3	-1	validated	p.R335Q	0.995	53	0%	44	18.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATR	545	genome.wustl.edu	37	3	142188939	142188939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001184.3	-1	reviewed	p.E2103A	1.000	81	0%	98	29.6%	2	100%	benign(0.015)	tolerated(0.3)	neutral(0.029)	superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142259786	142259786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001184.3	-1	reviewed	p.G1181S	1.000	111	0%	151	27.8%	1	0%	benign(0.018)	tolerated(0.49)	neutral(0.011)	HMMPfam_UME,HMMSmart_SM00802,superfamily_ARM repeat
PLS1	5357	genome.wustl.edu	37	3	142423412	142423412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145319.1	+1	reviewed	p.S538Y	0.942	134	0%	128	10.2%	1	0%	benign(0.046)	deleterious(0.01)	neutral(0.408)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
TRPC1	7220	genome.wustl.edu	37	3	142511767	142511767	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003304.4	+1	validated	p.L479	1.000	301	0%	261	24.1%	0	-	-	-	-	HMMPfam_Ion_trans
TRPC1	7220	genome.wustl.edu	37	3	142522879	142522879	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003304.4	+1	validated	p.I572	1.000	195	0%	162	16.7%	0	-	-	-	-	HMMPfam_Ion_trans
U2SURP	23350	genome.wustl.edu	37	3	142773963	142773963	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080415.1	+1	provisional	e27+2	1.000	31	0%	53	22.6%	0	-	-	-	-	-
SLC9A9	285195	genome.wustl.edu	37	3	143271229	143271229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173653.3	-1	reviewed	p.S355L	0.000	98	0%	88	21.6%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Na_H_Exchanger
PLOD2	5352	genome.wustl.edu	37	3	145839027	145839027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000480704	-1	known	p.S91P	1.000	348	0%	400	25.3%	6	16.6%	unknown(0)	-	-	NULL
PLSCR4	57088	genome.wustl.edu	37	3	145912223	145912223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020353.2	-1	validated	p.R322I	0.939	124	0%	121	26.4%	2	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Scramblase
PLSCR2	57047	genome.wustl.edu	37	3	146159544	146159544	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020359.1	-1	provisional	e6+1	0.000	100	0%	115	17.4%	0	-	-	-	-	-
PLSCR2	57047	genome.wustl.edu	37	3	146173244	146173244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020359.1	-1	provisional	p.L35I	0.000	136	0%	97	37.1%	0	-	benign(0.074)	tolerated(0.3)	neutral(0.034)	HMMPfam_Scramblase
CPA3	1359	genome.wustl.edu	37	3	148586781	148586781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001870.2	+1	reviewed	p.S75F	0.148	115	0%	116	23.3%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
HLTF	6596	genome.wustl.edu	37	3	148763993	148763993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003071.3	-1	reviewed	p.K649T	1.000	96	0%	87	21.8%	1	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_SNF2_N
TMEM183B	653659	genome.wustl.edu	37	3	149700726	149700726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079809.1	-1	validated	p.E124*	0.867	125	0%	185	28.1%	6	0%	-	-	-	NULL
FAM194A	131831	genome.wustl.edu	37	3	150403619	150403619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152394.3	-1	validated	p.F231	0.064	217	0%	185	28.1%	0	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	150873978	150873978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053002.4	+1	reviewed	p.R196Q	1.000	100	0%	131	14.5%	0	-	possibly_damaging(0.596)	tolerated(0.24)	neutral(0.243)	NULL
MED12L	116931	genome.wustl.edu	37	3	150906255	150906255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053002.4	+1	reviewed	p.A581T	1.000	382	0%	273	19.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR171	29909	genome.wustl.edu	37	3	150917066	150917066	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013308.3	-1	validated	p.T36	0.595	259	0.4%	163	16.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR87	53836	genome.wustl.edu	37	3	151011993	151011993	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023915.3	-1	validated	p.S347	0.001	633	0%	485	25.6%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
MED12L	116931	genome.wustl.edu	37	3	151075109	151075109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053002.4	+1	reviewed	p.R889C	1.000	223	0%	147	10.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MED12L	116931	genome.wustl.edu	37	3	151112620	151112620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053002.4	+1	reviewed	p.L1894I	1.000	217	0%	208	32.7%	0	-	benign(0.095)	tolerated(0.2)	neutral(0.056)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151171203	151171203	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178822.4	-1	validated	p.K228	0.003	501	0%	297	31.6%	0	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
P2RY1	5028	genome.wustl.edu	37	3	152554313	152554313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002563.2	+1	reviewed	p.D248Y	0.999	75	0%	81	33.3%	0	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	HMMPfam_7tm_1,superfamily_SSF81321
ARHGEF26	26084	genome.wustl.edu	37	3	153958181	153958181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015595.3	+1	validated	p.D705Y	1.000	86	0%	66	25.8%	1	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
DHX36	170506	genome.wustl.edu	37	3	154033949	154033949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020865.2	-1	validated	p.A83T	1.000	121	0%	106	22.6%	4	0%	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155199551	155199551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130960.1	-1	validated	p.Q1430K	0.019	189	0%	125	31.2%	2	50%	benign(0.014)	tolerated(0.67)	neutral(0.003)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155199734	155199734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130960.1	-1	validated	p.L1369I	0.938	186	0%	99	24.2%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155314139	155314139	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130960.1	-1	validated	p.S24	0.968	264	0.4%	232	23.7%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
C3orf33	285315	genome.wustl.edu	37	3	155493538	155493538	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173657.1	-1	predicted	p.E49*	1.000	188	0%	196	31.1%	1	0%	-	-	-	superfamily_Staphylococal_nuclease_OB-fold
KCNAB1	7881	genome.wustl.edu	37	3	155861043	155861043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003471.3	+1	reviewed	p.L26I	0.177	147	0%	121	25.6%	0	-	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
CCNL1	57018	genome.wustl.edu	37	3	156870888	156870888	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020307.2	-1	validated	p.I182	1.000	181	0%	183	25.1%	8	37.5%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
MFSD1	64747	genome.wustl.edu	37	3	158537471	158537471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022736.2	+1	validated	p.A229V	1.000	62	0%	75	29.3%	12	41.6%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PPM1L	151742	genome.wustl.edu	37	3	160679599	160679599	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139245.2	+1	provisional	p.E159*	1.000	193	0.5%	215	28.4%	1	0%	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SI	6476	genome.wustl.edu	37	3	164727117	164727117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001041.3	-1	reviewed	p.E1377*	0.985	193	0%	137	29.2%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164739105	164739105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001041.3	-1	reviewed	p.S1056R	0.962	486	0%	437	16%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
SI	6476	genome.wustl.edu	37	3	164750411	164750411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001041.3	-1	reviewed	p.K879Q	0.902	192	0%	148	31.1%	0	-	benign(0.429)	tolerated(0.16)	neutral(0.199)	NULL
SI	6476	genome.wustl.edu	37	3	164786524	164786524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001041.3	-1	reviewed	p.R157S	1.000	212	0%	145	26.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906887	164906887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014926.2	-1	validated	p.E578K	1.000	138	0%	115	10.4%	0	-	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	HMMSmart_LRRCT,superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165548547	165548547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000055.2	-1	reviewed	p.S92Y	1.000	155	0%	129	27.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_COesterase,superfamily_SSF53474
WDR49	151790	genome.wustl.edu	37	3	167245803	167245803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178824.3	-1	provisional	p.E451D	0.942	199	0%	160	23.7%	0	-	benign(0.006)	tolerated(0.77)	neutral(0.001)	superfamily_WD40 repeat-like
GOLIM4	27333	genome.wustl.edu	37	3	167742799	167742799	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014498.3	-1	reviewed	p.E570*	1.000	419	0%	363	30.3%	5	0%	-	-	-	NULL
GOLIM4	27333	genome.wustl.edu	37	3	167750470	167750470	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014498.3	-1	reviewed	p.E338	0.999	238	0%	212	35.8%	18	83.3%	-	-	-	NULL
LRRC34	151827	genome.wustl.edu	37	3	169524707	169524707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153353.4	-1	validated	p.L140F	0.002	161	0%	163	28.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00368,superfamily_RNI-like
SLC7A14	57709	genome.wustl.edu	37	3	170216490	170216490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020949.2	-1	validated	p.A242V	0.995	92	0%	110	31.8%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_AA_permease
SLC7A14	57709	genome.wustl.edu	37	3	170244714	170244714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020949.2	-1	validated	p.F4L	0.994	43	0%	40	40%	0	-	benign(0)	tolerated(1)	-	NULL
TNIK	23043	genome.wustl.edu	37	3	170928937	170928937	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015028.2	-1	validated	p.K92Q	1.000	157	0%	195	34.9%	0	-	benign(0.064)	deleterious(0.04)	neutral(0.353)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLD1	5337	genome.wustl.edu	37	3	171379852	171379852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002662.3	-1	validated	p.E780K	1.000	173	0%	107	19.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Phospholipase D/nuclease
SPATA16	83893	genome.wustl.edu	37	3	172674574	172674574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031955.5	-1	reviewed	p.S325L	0.985	293	0%	243	23.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_TPR-like
TBL1XR1	79718	genome.wustl.edu	37	3	176769436	176769436	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024665.4	-1	reviewed	p.R95	0.970	85	0%	83	25.3%	2	0%	-	-	-	NULL
TBL1XR1	79718	genome.wustl.edu	37	3	176771591	176771591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024665.4	-1	reviewed	p.Q58H	1.000	101	0%	96	29.2%	4	25%	benign(0.004)	tolerated(0.56)	neutral(0.006)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178937046	178937046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006218.2	+1	reviewed	p.S576Y	1.000	74	0%	70	18.6%	0	-	possibly_damaging(0.87)	tolerated(0.08)	deleterious(0.638)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PIK3CA	5290	genome.wustl.edu	37	3	178952018	178952018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006218.2	+1	reviewed	p.T1025A	1.000	175	0%	224	20.5%	5	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_PI3Kc,superfamily_Kinase_like
KCNMB3	27094	genome.wustl.edu	37	3	178962463	178962463	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014407.3	-1	reviewed	p.S93	0.044	217	0.9%	126	28.6%	0	-	-	-	-	HMMPfam_CaKB
MFN1	55669	genome.wustl.edu	37	3	179093043	179093043	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033540.2	+1	reviewed	p.F337	1.000	57	0%	39	33.3%	6	16.6%	-	-	-	NULL
ACTL6A	86	genome.wustl.edu	37	3	179294649	179294649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004301.3	+1	reviewed	p.R239I	1.000	247	0%	223	22.9%	25	52%	benign(0.067)	tolerated(0.13)	neutral(0.257)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MRPL47	57129	genome.wustl.edu	37	3	179320488	179320488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020409.2	-1	reviewed	p.E66*	1.000	170	0%	138	21%	9	11.1%	-	-	-	HMMPfam_MRP-L47
USP13	8975	genome.wustl.edu	37	3	179426675	179426675	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003940.2	+1	validated	p.A245	0.001	70	0%	77	18.2%	5	0%	-	-	-	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
TTC14	151613	genome.wustl.edu	37	3	180326509	180326509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133462.3	+1	validated	p.E437D	1.000	32	0%	22	18.2%	0	-	unknown(0)	tolerated(0.12)	-	NULL
FXR1	8087	genome.wustl.edu	37	3	180666525	180666525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005087.2	+1	reviewed	p.A146T	1.000	157	0%	128	31.2%	5	20%	benign(0.252)	tolerated(0.29)	neutral(0.055)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182577031	182577031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014616.1	+1	validated	p.E362K	1.000	127	0%	101	27.7%	0	-	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182616414	182616414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014616.1	+1	validated	p.N1058D	1.000	209	0%	148	29.7%	1	0%	benign(0)	tolerated(0.94)	-	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182897926	182897926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015078.2	-1	validated	p.S1013N	0.000	166	0%	137	31.4%	0	-	benign(0.17)	tolerated(0.22)	neutral(0.058)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182947467	182947467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015078.2	-1	validated	p.E678K	0.998	236	0%	258	12%	0	-	possibly_damaging(0.598)	tolerated(0.63)	neutral(0.210)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
HTR3C	170572	genome.wustl.edu	37	3	183772516	183772516	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130770.2	+1	reviewed	p.G25	0.000	106	0.9%	101	36.6%	0	-	-	-	-	NULL
HTR3C	170572	genome.wustl.edu	37	3	183774718	183774718	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130770.2	+1	reviewed	p.R149*	0.000	221	0%	306	34%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HTR3E	285242	genome.wustl.edu	37	3	183822115	183822115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000440596	+1	known	p.S142F	0.025	33	0%	40	25%	0	-	benign(0.29)	deleterious(0.05)	neutral(0.435)	superfamily_Nicotinic receptor ligand binding domain-like
EIF2B5	8893	genome.wustl.edu	37	3	183855715	183855715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003907.2	+1	reviewed	p.S179Y	1.000	69	0%	74	24.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_SSF53448
ALG3	10195	genome.wustl.edu	37	3	183963388	183963388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000411922	-1	known	p.S71L	0.965	25	0%	52	19.2%	161	44.7%	benign(0.113)	tolerated(0.66)	neutral(0.011)	NULL
ECE2	9718	genome.wustl.edu	37	3	183996047	183996047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014693.3	+1	validated	p.F350L	1.000	33	0%	54	13%	0	-	benign(0.166)	tolerated(1)	neutral(0.015)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
EIF4G1	1981	genome.wustl.edu	37	3	184038427	184038427	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182917.3	+1	reviewed	p.R183*	1.000	55	0%	74	28.4%	7	14.2%	-	-	-	NULL
CHRD	8646	genome.wustl.edu	37	3	184106720	184106720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003741.2	+1	reviewed	p.P917S	0.019	28	0%	51	31.4%	13	0%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_VWC,HMMSmart_SM00214
VPS8	23355	genome.wustl.edu	37	3	184570321	184570321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009921.2	+1	validated	p.D263N	1.000	166	0%	127	26.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40_like
C3orf70	285382	genome.wustl.edu	37	3	184800966	184800966	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025266.1	-1	predicted	p.A194	0.000	198	0%	130	32.3%	0	-	-	-	-	NULL
SENP2	59343	genome.wustl.edu	37	3	185316754	185316754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000439684	+1	known	p.E56K	0.928	112	0%	129	17.1%	0	-	unknown(0)	-	-	NULL
FETUB	26998	genome.wustl.edu	37	3	186364079	186364079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014375.2	+1	reviewed	p.E213*	0.945	328	0%	267	32.6%	0	-	-	-	-	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
HRG	3273	genome.wustl.edu	37	3	186386734	186386734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000412.2	+1	reviewed	p.T65N	0.022	213	0%	242	20.7%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
HRG	3273	genome.wustl.edu	37	3	186389461	186389461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000412.2	+1	reviewed	p.F147L	0.937	176	0%	274	29.6%	0	-	probably_damaging(0.965)	tolerated(0.65)	neutral(0.410)	HMMSmart_SM00043
KNG1	3827	genome.wustl.edu	37	3	186449380	186449380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102416.2	+1	reviewed	p.R240Q	0.000	43	0%	67	43.3%	0	-	benign(0.013)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00043,superfamily_Cystatin/monellin
RFC4	5984	genome.wustl.edu	37	3	186510634	186510634	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002916.3	-1	reviewed	p.S171	0.975	140	0.7%	179	31.3%	21	23.8%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
RTP4	64108	genome.wustl.edu	37	3	187088702	187088702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022147.2	+1	validated	p.Q94H	0.994	73	0%	84	32.1%	40	47.5%	probably_damaging(0.957)	tolerated(0.13)	deleterious(0.653)	NULL
FGF12	2257	genome.wustl.edu	37	3	191861894	191861894	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021032.3	-1	reviewed	p.S212	0.996	452	0%	339	18.3%	0	-	-	-	-	NULL
OPA1	4976	genome.wustl.edu	37	3	193332670	193332670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130837.2	+1	reviewed	p.S64Y	1.000	154	0%	129	11.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OPA1	4976	genome.wustl.edu	37	3	193332780	193332780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130837.2	+1	reviewed	p.R101C	1.000	124	0%	106	11.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OPA1	4976	genome.wustl.edu	37	3	193354988	193354988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130837.2	+1	reviewed	p.S318F	1.000	82	0%	57	12.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GP5	2814	genome.wustl.edu	37	3	194118511	194118511	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004488.2	-1	validated	p.T167	0.000	158	0%	147	25.9%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
ACAP2	23527	genome.wustl.edu	37	3	195027951	195027951	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012287.5	-1	validated	e12+1	1.000	210	0%	199	36.2%	0	-	-	-	-	-
ACAP2	23527	genome.wustl.edu	37	3	195047681	195047681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012287.5	-1	validated	p.R226Q	1.000	173	0%	164	28%	0	-	benign(0.001)	tolerated(1)	-	NULL
APOD	347	genome.wustl.edu	37	3	195300747	195300747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001647.3	-1	reviewed	p.K73N	0.720	77	0%	106	26.4%	13	7.6%	benign(0)	tolerated(0.56)	neutral(0.006)	superfamily_Lipocalins,HMMPfam_Lipocalin_2
MUC4	4585	genome.wustl.edu	37	3	195498543	195498543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018406.5	-1	reviewed	p.R4280W	0.000	35	0%	69	36.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_SM00539
TFRC	7037	genome.wustl.edu	37	3	195792337	195792337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128148.1	-1	validated	p.V392A	1.000	38	0%	56	33.9%	4	100%	possibly_damaging(0.781)	tolerated(0.14)	deleterious(0.542)	superfamily_Zn-dependent exopeptidases
TCTEX1D2	255758	genome.wustl.edu	37	3	196022891	196022891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152773.3	-1	validated	p.D123Y	1.000	67	0%	81	21%	4	50%	benign(0.205)	deleterious(0.01)	neutral(0.426)	HMMPfam_Tctex-1
RNF168	165918	genome.wustl.edu	37	3	196202171	196202171	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152617.2	-1	provisional	p.P231	0.944	63	0%	71	28.2%	3	33.3%	-	-	-	NULL
LRRC33	375387	genome.wustl.edu	37	3	196381499	196381499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198565.1	+1	provisional	p.S30F	0.006	51	0%	39	30.8%	2	0%	benign(0.139)	tolerated(0.06)	neutral(0.335)	NULL
LRRC33	375387	genome.wustl.edu	37	3	196387102	196387102	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198565.1	+1	provisional	p.I196	0.152	18	0%	31	45.2%	3	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
SENP5	205564	genome.wustl.edu	37	3	196612424	196612424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152699.4	+1	validated	p.K124N	0.997	122	0%	142	29.6%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	NULL
ENSG00000186777	0	genome.wustl.edu	37	4	265417	265417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000341087	-1	known	p.E87*	0.601	119	0%	126	27%	0	-	benign(0.062)	tolerated(0.27)	neutral(0.038)	superfamily_C2H2 and C2HC zinc fingers
ZNF732	654254	genome.wustl.edu	37	4	266264	266264	+	Nonsense_Mutation	SNP	C	C	A	rs148975969	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001137608.1	-1	provisional	p.E128*	0.028	88	0%	98	27.6%	0	-	-	-	-	NULL
ZNF721	170960	genome.wustl.edu	37	4	435686	435686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133474.2	-1	validated	p.R857I	0.917	213	0%	215	26.5%	4	50%	benign(0.025)	tolerated(0.18)	neutral(0.057)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	435770	435770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133474.2	-1	validated	p.R829I	0.999	220	0.5%	228	27.6%	1	0%	benign(0.058)	tolerated(0.35)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437198	437198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133474.2	-1	validated	p.R353I	0.219	228	0%	244	26.6%	9	77.7%	benign(0.16)	tolerated(0.2)	neutral(0.064)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437282	437282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133474.2	-1	validated	p.R325I	0.342	249	0%	287	29.3%	5	40%	benign(0.032)	tolerated(0.14)	neutral(0.251)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PDE6B	5158	genome.wustl.edu	37	4	650045	650045	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000283.3	+1	reviewed	p.I357	0.979	26	0%	24	29.2%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
RNF212	285498	genome.wustl.edu	37	4	1067393	1067393	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001131034.1	-1	validated	p.R190*	1.000	50	0%	102	27.5%	20	0%	-	-	-	NULL
KIAA1530	57654	genome.wustl.edu	37	4	1341896	1341896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020894.2	+1	validated	p.S6L	0.046	46	0%	58	24.1%	0	-	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
LETM1	3954	genome.wustl.edu	37	4	1838249	1838249	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012318.2	-1	reviewed	p.F215	0.980	45	0%	86	37.2%	16	43.7%	-	-	-	HMMPfam_LETM1
WHSC1	7468	genome.wustl.edu	37	4	1902586	1902586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042424.2	+1	reviewed	p.D69N	0.878	88	0%	112	33.9%	7	42.8%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1936942	1936942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042424.2	+1	reviewed	p.D543N	0.998	147	0%	155	24.5%	6	50%	benign(0.031)	tolerated(0.31)	neutral(0.029)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1957836	1957836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000514329	+1	known	p.A258T	0.781	77	0%	72	13.9%	2	50%	-	-	-	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
HAUS3	79441	genome.wustl.edu	37	4	2241823	2241823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024511.5	-1	provisional	p.S284L	0.047	56	0%	69	20.3%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2692550	2692550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003704.3	+1	validated	p.L595V	1.000	176	0%	109	28.4%	0	-	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	NULL
HTT	3064	genome.wustl.edu	37	4	3174089	3174089	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002111.6	+1	reviewed	p.R1303*	0.989	139	0%	145	23.4%	2	0%	-	-	-	superfamily_ARM repeat
HTT	3064	genome.wustl.edu	37	4	3235013	3235013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002111.6	+1	reviewed	p.D2797N	1.000	56	0%	43	34.9%	38	2.6%	benign(0.095)	tolerated(0.05)	neutral(0.352)	NULL
RGS12	6002	genome.wustl.edu	37	4	3318204	3318204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198229.2	+1	reviewed	p.E103K	0.966	78	0%	91	31.9%	0	-	benign(0.282)	tolerated(0.28)	neutral(0.118)	superfamily_PDZ domain-like
ENSG00000221301	0	genome.wustl.edu	37	4	4086175	4086175	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000408374	+1	novel	NULL	0.026	138	0%	172	33.7%	0	-	-	-	-	-
OTOP1	133060	genome.wustl.edu	37	4	4207831	4207831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177998.1	-1	provisional	p.K189N	1.000	59	0%	83	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF270
TMEM128	85013	genome.wustl.edu	37	4	4239657	4239657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032927.2	-1	provisional	p.N111S	1.000	172	0%	138	11.6%	31	12.9%	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	NULL
ZBTB49	166793	genome.wustl.edu	37	4	4317658	4317658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145291.3	+1	validated	p.R528W	0.949	118	0%	84	26.2%	1	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
D4S234E	27065	genome.wustl.edu	37	4	4418991	4418991	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040101.1	+1	validated	p.E129	1.000	118	0%	82	39%	27	55.5%	-	-	-	HMMPfam_Calcyon
EVC	2121	genome.wustl.edu	37	4	5750014	5750014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153717.2	+1	reviewed	p.S360Y	0.339	65	0%	100	33%	0	-	unknown(0)	deleterious(0.02)	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6863430	6863430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100590.1	+1	validated	p.L441V	0.242	161	0.6%	138	27.5%	0	-	possibly_damaging(0.556)	tolerated(0.14)	neutral(0.439)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6865325	6865325	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100590.1	+1	validated	p.P1072	0.806	245	0%	307	24.4%	0	-	-	-	-	NULL
ABLIM2	84448	genome.wustl.edu	37	4	8037948	8037948	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130083.1	-1	validated	p.I325	0.997	18	0%	33	36.4%	3	0%	-	-	-	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8220028	8220028	+	Missense_Mutation	SNP	C	C	T	rs144885198	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000502669	+1	known	p.S195L	0.000	20	0%	24	25%	3	0%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
ENSG00000219492	0	genome.wustl.edu	37	4	9385958	9385958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508324	-1	known	p.K229T	0.073	331	0%	389	17.2%	0	-	possibly_damaging(0.797)	deleterious(0.01)	deleterious(0.705)	superfamily_C2H2 and C2HC zinc fingers
DRD5	1816	genome.wustl.edu	37	4	9784694	9784694	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000798.4	+1	reviewed	p.F347	0.992	84	0%	104	24%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
WDR1	9948	genome.wustl.edu	37	4	10099374	10099374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017491.3	-1	reviewed	p.F173L	1.000	37	0%	33	24.2%	95	22.1%	benign(0.011)	tolerated(0.55)	neutral(0.007)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZNF518B	85460	genome.wustl.edu	37	4	10446096	10446096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053042.2	-1	validated	p.K619N	0.001	240	0%	257	22.6%	0	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10446695	10446695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053042.2	-1	validated	p.S420R	0.000	185	0%	204	26%	0	-	benign(0)	tolerated(0.98)	-	NULL
CLNK	116449	genome.wustl.edu	37	4	10599639	10599639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052964.2	-1	validated	p.D16N	0.259	33	0%	30	23.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC643446	643446	genome.wustl.edu	37	4	11373983	11373983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001130637.2	+1	model	p.R129C	0.888	99	0%	92	34.8%	45	0%	-	-	-	NULL
BOD1L	259282	genome.wustl.edu	37	4	13603527	13603527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148894.2	-1	validated	p.S1666Y	0.034	576	0.2%	489	19.8%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13603610	13603610	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148894.2	-1	validated	p.I1638	0.000	376	0%	322	31.1%	3	0%	-	-	-	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15513020	15513020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080522.2	+1	reviewed	p.P231S	0.000	70	0%	94	34%	2	100%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15529085	15529085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080522.2	+1	reviewed	p.H389N	0.002	70	0%	45	20%	0	-	benign(0.071)	tolerated(0.5)	neutral(0.015)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15554924	15554924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080522.2	+1	reviewed	p.R828W	0.004	158	0%	159	22.6%	0	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
FBXL5	26234	genome.wustl.edu	37	4	15626978	15626978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012161.2	-1	reviewed	p.D583Y	1.000	90	0%	105	19%	11	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RNI-like
FBXL5	26234	genome.wustl.edu	37	4	15627285	15627285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012161.2	-1	reviewed	p.W480*	1.000	234	0%	197	29.9%	14	0%	-	-	-	superfamily_RNI-like
TAPT1	202018	genome.wustl.edu	37	4	16168369	16168369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153365.2	-1	reviewed	p.S454L	0.981	105	0%	81	32.1%	9	33.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_DUF747
TAPT1	202018	genome.wustl.edu	37	4	16168396	16168396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153365.2	-1	reviewed	p.L445R	0.996	90	0%	77	36.4%	11	63.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF747
LDB2	9079	genome.wustl.edu	37	4	16760787	16760787	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001290.3	-1	validated	p.R77*	1.000	197	0%	147	29.9%	3	0%	-	-	-	HMMPfam_LIM_bind
CLRN2	645104	genome.wustl.edu	37	4	17528592	17528592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079827.2	+1	reviewed	p.A196T	0.981	84	0%	104	26.9%	0	-	possibly_damaging(0.796)	tolerated(0.31)	neutral(0.326)	NULL
DCAF16	54876	genome.wustl.edu	37	4	17805494	17805494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017741.3	-1	provisional	p.R91*	0.991	164	0%	226	31.4%	3	33.3%	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17824682	17824682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022346.3	+1	validated	p.E399*	1.000	105	0%	98	28.6%	0	-	-	-	-	superfamily_ARM-type_fold
SLIT2	9353	genome.wustl.edu	37	4	20570620	20570620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004787.1	+1	provisional	p.E1027D	1.000	186	0%	123	25.2%	0	-	benign(0.066)	tolerated(0.23)	neutral(0.046)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
KCNIP4	80333	genome.wustl.edu	37	4	20751288	20751288	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035004.1	-1	reviewed	p.S79L	1.000	98	0%	82	25.6%	0	-	-	-	-	NULL
GPR125	166647	genome.wustl.edu	37	4	22394238	22394238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145290.2	-1	validated	p.Q853K	1.000	160	0.6%	102	23.5%	5	40%	possibly_damaging(0.9)	tolerated(0.38)	neutral(0.374)	HMMPfam_7tm_2
GPR125	166647	genome.wustl.edu	37	4	22394252	22394252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145290.2	-1	validated	p.R848Q	1.000	153	0%	102	26.5%	7	71.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_2
PPARGC1A	10891	genome.wustl.edu	37	4	23814698	23814698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013261.3	-1	reviewed	p.N615T	0.998	241	0%	219	29.2%	0	-	unknown(0)	tolerated(0.32)	-	NULL
PPARGC1A	10891	genome.wustl.edu	37	4	23814749	23814749	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013261.3	-1	reviewed	e9-1	1.000	153	0%	137	25.5%	0	-	-	-	-	-
SEL1L3	23231	genome.wustl.edu	37	4	25769163	25769163	+	Silent	SNP	G	G	A	rs182680181	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015187.3	-1	validated	p.I943	1.000	36	0%	33	39.4%	20	35%	-	-	-	superfamily_HCP-like
RBPJ	3516	genome.wustl.edu	37	4	26432339	26432339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005349.2	+1	validated	p.V405I	1.000	261	0%	271	23.6%	58	24.1%	possibly_damaging(0.46)	tolerated(0.14)	neutral(0.400)	HMMPfam_TIG,superfamily_E set domains
TBC1D19	55296	genome.wustl.edu	37	4	26585870	26585870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018317.2	+1	validated	p.L19F	1.000	20	0%	38	26.3%	0	-	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	NULL
STIM2	57620	genome.wustl.edu	37	4	26959246	26959246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020860.3	+1	reviewed	p.D186Y	1.000	311	0%	259	15.1%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36160368	36160368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015230.2	-1	reviewed	p.E912D	1.000	86	0%	71	36.6%	0	-	benign(0.07)	tolerated(0.33)	neutral(0.029)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36161024	36161024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015230.2	-1	reviewed	p.T849I	1.000	178	0%	208	31.2%	0	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36189105	36189105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015230.2	-1	reviewed	p.Q549P	1.000	201	0%	120	10.8%	0	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36214942	36214942	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015230.2	-1	reviewed	e3-1	1.000	154	0%	128	32.8%	0	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36230736	36230736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015230.2	-1	reviewed	p.K125Q	0.000	216	0%	175	11.4%	0	-	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
PGM2	55276	genome.wustl.edu	37	4	37841756	37841756	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018290.3	+1	validated	p.E198D	0.501	246	0%	261	25.3%	2	100%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_PGM_PMM_I,superfamily_A-D-PHexomutase_a/b/a-I/II/III
TBC1D1	23216	genome.wustl.edu	37	4	38023274	38023274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015173.2	+1	validated	p.A382V	0.003	14	0%	15	33.3%	3	33.3%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00462
RFC1	5981	genome.wustl.edu	37	4	39310597	39310597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002913.3	-1	reviewed	p.R515I	1.000	389	0%	337	34.4%	1	100%	benign(0.132)	deleterious(0.05)	neutral(0.356)	NULL
KLB	152831	genome.wustl.edu	37	4	39409009	39409009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175737.3	+1	validated	p.S147Y	0.994	258	0%	282	26.6%	0	-	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
UBE2K	3093	genome.wustl.edu	37	4	39747420	39747420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005339.4	+1	reviewed	p.N69T	1.000	116	0%	205	18%	17	17.6%	benign(0.194)	tolerated(0.48)	neutral(0.028)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
NSUN7	79730	genome.wustl.edu	37	4	40792738	40792738	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024677.4	+1	validated	p.E386*	1.000	195	0%	156	27.6%	1	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
APBB2	323	genome.wustl.edu	37	4	40818114	40818114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173075.4	-1	reviewed	p.P736S	1.000	377	0%	352	27%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LIMCH1	22998	genome.wustl.edu	37	4	41648264	41648264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014988.2	+1	validated	p.S408I	1.000	286	0%	233	25.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LIMCH1	22998	genome.wustl.edu	37	4	41668605	41668605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014988.2	+1	validated	p.E722K	0.996	186	0%	159	30.8%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
LIMCH1	22998	genome.wustl.edu	37	4	41694357	41694357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014988.2	+1	validated	p.R1061Q	1.000	114	0%	99	19.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,HMMSmart_SM00132
PHOX2B	8929	genome.wustl.edu	37	4	41749465	41749465	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000510424	-1	known	p.S50*	1.000	22	0%	17	35.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PHOX2B	8929	genome.wustl.edu	37	4	41750502	41750502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003924.3	-1	reviewed	p.F42L	1.000	31	0%	26	19.2%	0	-	possibly_damaging(0.891)	tolerated(0.09)	deleterious(0.647)	NULL
TMEM33	55161	genome.wustl.edu	37	4	41945832	41945832	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018126.2	+1	validated	e4+1	1.000	120	0%	122	27%	0	-	-	-	-	-
ATP8A1	10396	genome.wustl.edu	37	4	42445623	42445623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006095.2	-1	reviewed	p.L1028M	0.997	150	0%	125	28.8%	0	-	possibly_damaging(0.609)	deleterious(0.01)	deleterious(0.617)	NULL
GABRA2	2555	genome.wustl.edu	37	4	46305504	46305504	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000807.2	-1	reviewed	p.E277*	1.000	216	0%	137	25.5%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA2	2555	genome.wustl.edu	37	4	46314682	46314682	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000807.2	-1	reviewed	p.K103Q	1.000	175	0%	130	34.6%	0	-	possibly_damaging(0.8)	tolerated(0.08)	deleterious(0.601)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA4	2557	genome.wustl.edu	37	4	46930732	46930732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000809.2	-1	reviewed	p.A392V	0.214	149	0%	136	16.9%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA4	2557	genome.wustl.edu	37	4	46967017	46967017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000809.2	-1	reviewed	p.Q368H	0.476	300	0%	347	32.3%	0	-	possibly_damaging(0.516)	tolerated(0.12)	neutral(0.434)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA4	2557	genome.wustl.edu	37	4	46973167	46973167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000809.2	-1	reviewed	p.M269I	1.000	146	0%	154	28.6%	0	-	possibly_damaging(0.756)	deleterious(0.01)	deleterious(0.685)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB1	2560	genome.wustl.edu	37	4	47034490	47034490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000812.3	+1	reviewed	p.E77K	1.000	45	0%	30	16.7%	0	-	benign(0.245)	deleterious(0)	deleterious(0.470)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRB1	2560	genome.wustl.edu	37	4	47405605	47405605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000812.3	+1	reviewed	p.R238C	0.998	169	0%	192	23.4%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ATP10D	57205	genome.wustl.edu	37	4	47578822	47578822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020453.3	+1	validated	p.F1133L	1.000	789	0%	734	22.2%	0	-	possibly_damaging(0.854)	tolerated(0.69)	neutral(0.331)	NULL
ATP10D	57205	genome.wustl.edu	37	4	47593265	47593265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020453.3	+1	validated	p.F1383C	0.005	381	0%	283	34.6%	0	-	benign(0.075)	deleterious(0.04)	neutral(0.354)	NULL
CORIN	10699	genome.wustl.edu	37	4	47765475	47765475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006587.2	-1	reviewed	p.R180C	1.000	81	0%	74	43.2%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
NFXL1	152518	genome.wustl.edu	37	4	47907339	47907339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152995.4	-1	validated	p.R144Q	1.000	169	0%	121	26.4%	2	100%	benign(0.328)	tolerated(0.08)	neutral(0.403)	NULL
CNGA1	1259	genome.wustl.edu	37	4	47938564	47938564	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142564.1	-1	reviewed	p.E718	0.965	417	0%	377	29.2%	0	-	-	-	-	NULL
CNGA1	1259	genome.wustl.edu	37	4	47942804	47942804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142564.1	-1	reviewed	p.D283N	1.000	143	0%	137	28.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TXK	7294	genome.wustl.edu	37	4	48114498	48114498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003328.2	-1	validated	p.R69Q	0.923	300	0%	196	20.4%	0	-	possibly_damaging(0.95)	tolerated(0.35)	neutral(0.414)	superfamily_SH3
FRYL	285527	genome.wustl.edu	37	4	48512934	48512934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.R2738H	1.000	196	0%	125	33.6%	3	0%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48542543	48542543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.R2041Q	1.000	214	0%	200	21.5%	1	0%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48566004	48566004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.A1186V	1.000	119	0%	137	28.5%	1	100%	benign(0.062)	tolerated(0.09)	neutral(0.300)	NULL
FRYL	285527	genome.wustl.edu	37	4	48566987	48566987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.K1135T	1.000	300	0%	210	28.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FRYL	285527	genome.wustl.edu	37	4	48584583	48584583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.K639N	1.000	144	0%	118	28%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48621365	48621365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015030.1	-1	validated	p.D113Y	1.000	189	0%	142	23.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OCIAD2	132299	genome.wustl.edu	37	4	48901864	48901864	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014446.1	-1	validated	p.E49*	1.000	251	0%	179	18.4%	114	4.3%	-	-	-	HMMPfam_OCIA
SGCB	6443	genome.wustl.edu	37	4	52895024	52895024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000232.4	-1	reviewed	p.D165Y	1.000	201	0%	153	32%	10	30%	probably_damaging(0.984)	tolerated(0.07)	deleterious(0.750)	HMMPfam_Sarcoglycan_1
KIT	3815	genome.wustl.edu	37	4	55599241	55599241	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000222.2	+1	reviewed	p.I789	1.000	196	0%	176	34.1%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
KIT	3815	genome.wustl.edu	37	4	55604658	55604658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000222.2	+1	reviewed	p.R956W	0.999	242	0%	216	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDR	3791	genome.wustl.edu	37	4	55953916	55953916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002253.2	-1	reviewed	p.D1174Y	1.000	181	0%	149	20.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDR	3791	genome.wustl.edu	37	4	55976857	55976857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002253.2	-1	reviewed	p.A352V	1.000	202	0%	272	31.6%	0	-	benign(0)	tolerated(1)	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NMU	10874	genome.wustl.edu	37	4	56473498	56473498	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006681.2	-1	validated	p.S109	0.736	58	0%	54	29.6%	0	-	-	-	-	NULL
EXOC1	55763	genome.wustl.edu	37	4	56730491	56730491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024924.1	+1	reviewed	p.L118F	1.000	75	0%	53	37.7%	2	0%	probably_damaging(0.982)	tolerated(0.13)	deleterious(0.679)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56759755	56759755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024924.1	+1	reviewed	p.R588C	1.000	169	0%	101	24.8%	3	33.3%	possibly_damaging(0.847)	tolerated(0.06)	deleterious(0.647)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56819387	56819387	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025009.3	+1	validated	p.E84*	1.000	117	0%	77	28.6%	1	100%	-	-	-	NULL
CEP135	9662	genome.wustl.edu	37	4	56820394	56820394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025009.3	+1	validated	p.S106*	0.000	106	0%	76	34.2%	1	0%	-	-	-	NULL
PPAT	5471	genome.wustl.edu	37	4	57267648	57267648	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002703.3	-1	reviewed	e7-1	1.000	60	0%	54	20.4%	0	-	-	-	-	-
PPAT	5471	genome.wustl.edu	37	4	57269285	57269285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002703.3	-1	reviewed	p.I194M	1.000	111	0%	103	31.1%	1	100%	possibly_damaging(0.844)	deleterious(0.05)	deleterious(0.669)	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
REST	5978	genome.wustl.edu	37	4	57796544	57796544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005612.3	+1	reviewed	p.G507E	0.158	153	0%	108	25.9%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
POLR2B	5431	genome.wustl.edu	37	4	57887151	57887151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000938.1	+1	reviewed	p.G804S	1.000	202	0%	151	27.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR2B	5431	genome.wustl.edu	37	4	57888376	57888376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000938.1	+1	reviewed	p.E827*	1.000	205	0%	135	28.1%	12	8.3%	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR2B	5431	genome.wustl.edu	37	4	57891056	57891056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000938.1	+1	reviewed	p.S990L	0.997	385	0.5%	300	23%	49	61.2%	benign(0.269)	deleterious(0)	deleterious(0.473)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
EPHA5	2044	genome.wustl.edu	37	4	66356200	66356200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004439.5	-1	reviewed	p.A433T	1.000	111	0%	107	26.2%	0	-	possibly_damaging(0.866)	tolerated(0.08)	deleterious(0.635)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CENPC1	1060	genome.wustl.edu	37	4	68374763	68374763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001812.2	-1	reviewed	p.R558Q	0.001	172	0%	172	26.2%	1	0%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
STAP1	26228	genome.wustl.edu	37	4	68441174	68441174	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012108.2	+1	reviewed	p.A88	1.000	160	0%	135	22.2%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TMPRSS11D	9407	genome.wustl.edu	37	4	68703964	68703964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000514868	-1	known	p.E5*	0.887	131	0%	124	35.5%	0	-	probably_damaging(0.99)	tolerated(0.23)	deleterious(0.483)	NULL
TMPRSS11A	339967	genome.wustl.edu	37	4	68784873	68784873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182606.3	-1	validated	p.R260I	0.958	187	0%	154	34.4%	0	-	possibly_damaging(0.888)	tolerated(0.08)	deleterious(0.647)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMPRSS11A	339967	genome.wustl.edu	37	4	68810239	68810239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182606.3	-1	validated	p.L84V	0.390	222	0%	259	25.5%	0	-	benign(0.208)	tolerated(0.23)	neutral(0.061)	HMMPfam_SEA,superfamily_SEA domain
TMPRSS11B	132724	genome.wustl.edu	37	4	69093698	69093698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182502.3	-1	validated	p.K394N	0.028	265	0%	180	33.3%	0	-	possibly_damaging(0.846)	tolerated(0.1)	deleterious(0.611)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
YTHDC1	91746	genome.wustl.edu	37	4	69185904	69185904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031732.2	-1	validated	p.D541Y	1.000	220	0%	120	27.5%	19	0%	unknown(0)	deleterious(0)	-	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69203402	69203402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031732.2	-1	validated	p.R116H	1.000	96	0%	90	35.6%	5	60%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
UGT2B15	7366	genome.wustl.edu	37	4	69512837	69512837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001076.2	-1	validated	p.K526N	0.585	584	0%	554	31.4%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_UDPGT
UGT2B10	7365	genome.wustl.edu	37	4	69693266	69693266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001075.4	+1	validated	p.S436L	0.930	360	0%	343	24.2%	0	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A3	79799	genome.wustl.edu	37	4	69795785	69795785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024743.3	-1	validated	p.S444P	0.981	216	0%	242	30.6%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B7	7364	genome.wustl.edu	37	4	69962930	69962930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001074.2	+1	validated	p.K231T	0.001	223	0%	197	31%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A2	574537	genome.wustl.edu	37	4	70505195	70505195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105677.1	-1	inferred	p.R47I	1.000	490	0%	379	31.1%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1B1	27284	genome.wustl.edu	37	4	70620490	70620490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014465.3	-1	reviewed	p.D59Y	0.708	248	0%	257	35%	0	-	benign(0.11)	deleterious(0.05)	neutral(0.354)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
SULT1E1	6783	genome.wustl.edu	37	4	70721060	70721060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005420.2	-1	reviewed	p.R77Q	0.116	83	0%	57	21.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
C4orf40	401137	genome.wustl.edu	37	4	71024129	71024129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_214711.3	+1	validated	p.R54C	0.001	371	0%	310	33.5%	0	-	possibly_damaging(0.522)	deleterious(0)	deleterious(0.621)	NULL
SMR3A	26952	genome.wustl.edu	37	4	71232443	71232443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012390.3	+1	validated	p.G46E	0.000	348	0%	552	35.3%	0	-	unknown(0)	tolerated(0.46)	-	NULL
AMBN	258	genome.wustl.edu	37	4	71462718	71462718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016519.4	+1	reviewed	p.F29L	0.454	125	0%	78	34.6%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_Amelin,HMMSmart_SM00817
AMBN	258	genome.wustl.edu	37	4	71465346	71465346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016519.4	+1	reviewed	p.E93*	0.990	139	0%	117	30.8%	0	-	-	-	-	HMMPfam_Amelin,HMMSmart_SM00817
RUFY3	22902	genome.wustl.edu	37	4	71628369	71628369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037442.2	+1	validated	p.F104L	1.000	311	0%	355	25.1%	1	0%	possibly_damaging(0.95)	tolerated(0.24)	neutral(0.431)	HMMPfam_RUN
RUFY3	22902	genome.wustl.edu	37	4	71634261	71634261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037442.2	+1	validated	p.F193L	1.000	236	0%	235	31.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RUN,HMMSmart_SM00593
RUFY3	22902	genome.wustl.edu	37	4	71655242	71655242	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037442.2	+1	validated	p.E424*	1.000	273	0%	270	21.5%	6	0%	-	-	-	NULL
GC	2638	genome.wustl.edu	37	4	72635099	72635099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000583.2	-1	reviewed	p.N26T	0.993	73	0%	46	32.6%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ADAMTS3	9508	genome.wustl.edu	37	4	73148951	73148951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014243.1	-1	reviewed	p.D1174Y	0.001	235	0%	167	25.1%	0	-	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	73959869	73959869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032217.3	-1	reviewed	p.R1752W	1.000	278	0.4%	264	31.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ANKRD17	26057	genome.wustl.edu	37	4	73963913	73963913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032217.3	-1	reviewed	p.R1633H	0.785	437	0%	491	20.4%	12	25%	benign(0.01)	tolerated(0.06)	neutral(0.323)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74005272	74005272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032217.3	-1	reviewed	p.D1021Y	1.000	120	0%	80	22.5%	6	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74005649	74005649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032217.3	-1	reviewed	p.R895I	1.000	331	0%	244	26.6%	2	0%	possibly_damaging(0.925)	tolerated(0.07)	deleterious(0.693)	superfamily_Ankyrin repeat
AFP	174	genome.wustl.edu	37	4	74309145	74309145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134.1	+1	reviewed	p.R233*	0.003	194	0%	137	20.4%	0	-	-	-	-	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFM	173	genome.wustl.edu	37	4	74353475	74353475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001133.2	+1	reviewed	p.S217Y	0.995	84	0%	94	19.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Serum albumin-like,HMMSmart_SM00103
AFM	173	genome.wustl.edu	37	4	74357800	74357800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001133.2	+1	reviewed	p.A352V	0.650	197	0%	140	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
MTHFD2L	441024	genome.wustl.edu	37	4	75040295	75040295	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144978.1	+1	provisional	p.E72	0.151	126	0%	123	30.1%	1	0%	-	-	-	HMMPfam_THF_DHG_CYH,superfamily_Aminoacid dehydrogenase-like N-terminal domain
EPGN	255324	genome.wustl.edu	37	4	75178800	75178800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013442.1	+1	provisional	p.S98Y	1.000	185	0%	111	32.4%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
PARM1	25849	genome.wustl.edu	37	4	75937994	75937994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015393.2	+1	validated	p.A135T	0.000	631	0%	703	30.7%	9	22.2%	benign(0.039)	tolerated(0.21)	neutral(0.046)	NULL
CDKL2	8999	genome.wustl.edu	37	4	76529044	76529044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003948.3	-1	reviewed	p.R251I	1.000	199	0%	156	25%	0	-	possibly_damaging(0.662)	deleterious(0.02)	deleterious(0.617)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
G3BP2	9908	genome.wustl.edu	37	4	76571617	76571617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012297.4	-1	validated	p.R361C	1.000	599	0%	507	26.6%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PPEF2	5470	genome.wustl.edu	37	4	76809437	76809437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006239.2	-1	reviewed	p.K154N	1.000	138	0%	152	24.3%	0	-	benign(0.052)	tolerated(0.11)	neutral(0.275)	HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
SCARB2	950	genome.wustl.edu	37	4	77116937	77116937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005506.2	-1	reviewed	p.F66L	1.000	190	0%	233	34.8%	6	33.3%	benign(0.115)	tolerated(0.08)	neutral(0.309)	HMMPfam_CD36
CCDC158	339965	genome.wustl.edu	37	4	77303842	77303842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042784.1	-1	validated	p.E279K	0.967	192	0%	217	22.1%	0	-	probably_damaging(0.981)	tolerated(0.24)	neutral(0.463)	NULL
CXCL13	10563	genome.wustl.edu	37	4	78527033	78527033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006419.2	+1	validated	p.S5L	0.000	161	0%	124	13.7%	78	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
MRPL1	65008	genome.wustl.edu	37	4	78806464	78806464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020236.3	+1	reviewed	p.E153K	0.986	183	0%	187	20.9%	19	26.3%	benign(0.188)	deleterious(0.04)	neutral(0.366)	HMMPfam_Ribosomal_L1,superfamily_Ribosomal protein L1
BMP2K	55589	genome.wustl.edu	37	4	79780792	79780792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198892.1	+1	reviewed	p.Y313F	1.000	120	0%	103	38.8%	2	0%	benign(0.003)	tolerated(0.63)	neutral(0.004)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BMP2K	55589	genome.wustl.edu	37	4	79831831	79831831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000502613	+1	known	p.E403*	0.174	194	0%	163	26.4%	0	-	unknown(0)	deleterious(0)	-	NULL
GK2	2712	genome.wustl.edu	37	4	80328736	80328736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033214.2	-1	validated	p.L207I	1.000	377	0%	322	30.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_FGGY_N,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80929758	80929758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145794.1	-1	reviewed	p.A320T	0.826	160	0%	168	29.8%	5	20%	possibly_damaging(0.659)	tolerated(0.17)	neutral(0.291)	NULL
FGF5	2250	genome.wustl.edu	37	4	81196071	81196071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004464.3	+1	reviewed	p.E122*	1.000	61	0%	66	31.8%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
PRKG2	5593	genome.wustl.edu	37	4	82056347	82056347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006259.1	-1	provisional	p.E580*	1.000	317	0%	209	31.1%	0	-	-	-	-	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
PRKG2	5593	genome.wustl.edu	37	4	82096015	82096015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006259.1	-1	provisional	p.R187I	0.998	343	0%	292	31.2%	0	-	benign(0.055)	tolerated(0.44)	neutral(0.016)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
PRKG2	5593	genome.wustl.edu	37	4	82126100	82126100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006259.1	-1	provisional	p.E34D	0.993	84	0%	85	17.6%	0	-	benign(0.183)	deleterious(0.01)	neutral(0.423)	NULL
HNRNPD	3184	genome.wustl.edu	37	4	83278493	83278493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000514671	-1	known	p.E146*	1.000	108	0%	95	25.3%	209	30.1%	benign(0.01)	tolerated(0.45)	neutral(0.013)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
THAP9	79725	genome.wustl.edu	37	4	83838147	83838147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024672.4	+1	validated	p.S261Y	0.998	317	0%	302	26.8%	2	50%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
THAP9	79725	genome.wustl.edu	37	4	83838633	83838633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024672.4	+1	validated	p.R423I	0.992	221	0%	218	25.7%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
THAP9	79725	genome.wustl.edu	37	4	83839768	83839768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024672.4	+1	validated	p.Q801H	1.000	168	0%	123	29.3%	0	-	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	NULL
LIN54	132660	genome.wustl.edu	37	4	83857202	83857202	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194282.2	-1	validated	p.R593*	1.000	223	0%	174	25.9%	1	0%	-	-	-	NULL
HELQ	113510	genome.wustl.edu	37	4	84342766	84342766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133636.2	-1	validated	p.L967I	0.993	70	0%	57	29.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HELQ	113510	genome.wustl.edu	37	4	84348753	84348753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133636.2	-1	validated	p.S880*	0.387	176	0%	155	27.7%	1	0%	-	-	-	NULL
AGPAT9	84803	genome.wustl.edu	37	4	84465702	84465702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032717.3	+1	validated	p.R52Q	0.995	318	0%	325	22.8%	0	-	benign(0.131)	tolerated(0.19)	neutral(0.060)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85663004	85663004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014991.4	-1	reviewed	p.F2048L	1.000	142	0%	85	30.6%	0	-	benign(0.007)	tolerated(1)	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85715751	85715751	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014991.4	-1	reviewed	p.Y1136	0.838	422	0%	319	25.1%	0	-	-	-	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85731460	85731460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014991.4	-1	reviewed	p.R642I	1.000	89	0%	90	26.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ARHGAP24	83478	genome.wustl.edu	37	4	86643069	86643069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025616.2	+1	validated	p.S71Y	0.015	254	0%	167	10.8%	0	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGAP24	83478	genome.wustl.edu	37	4	86898726	86898726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025616.2	+1	validated	p.F270L	1.000	112	0%	118	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP24	83478	genome.wustl.edu	37	4	86915860	86915860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025616.2	+1	validated	p.K351N	1.000	511	0%	342	23.4%	1	0%	possibly_damaging(0.942)	tolerated(0.08)	deleterious(0.687)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87671636	87671636	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080685.2	+1	reviewed	p.F888	1.000	276	0%	284	28.2%	0	-	-	-	-	superfamily_SSF50729
PTPN13	5783	genome.wustl.edu	37	4	87684044	87684044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080685.2	+1	reviewed	p.R1240W	0.985	131	0%	134	26.9%	0	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87706488	87706488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080685.2	+1	reviewed	p.E2080K	0.160	52	0%	40	37.5%	1	0%	benign(0.03)	tolerated(0.89)	neutral(0.002)	NULL
C4orf36	132989	genome.wustl.edu	37	4	87812654	87812654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144645.3	-1	validated	p.R7I	0.921	225	0%	200	20.5%	4	0%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
KLHL8	57563	genome.wustl.edu	37	4	88097911	88097911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020803.3	-1	validated	p.K402N	1.000	327	0%	260	18.1%	4	0%	probably_damaging(0.982)	tolerated(0.4)	neutral(0.443)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
HSD17B13	345275	genome.wustl.edu	37	4	88236730	88236730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178135.3	-1	validated	p.S158P	0.008	70	0%	58	36.2%	1	0%	possibly_damaging(0.757)	tolerated(0.07)	deleterious(0.599)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
SPARCL1	8404	genome.wustl.edu	37	4	88415107	88415107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128310.1	-1	validated	p.S282L	0.056	767	0%	638	20.7%	51	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
DSPP	1834	genome.wustl.edu	37	4	88534411	88534411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014208.3	+1	reviewed	p.R358I	0.001	194	0%	166	22.9%	0	-	benign(0.04)	-	-	NULL
DMP1	1758	genome.wustl.edu	37	4	88583555	88583555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004407.3	+1	reviewed	p.E209K	0.557	122	0%	97	19.6%	0	-	possibly_damaging(0.478)	deleterious(0.01)	deleterious(0.564)	HMMPfam_DMP1
IBSP	3381	genome.wustl.edu	37	4	88732782	88732782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004967.3	+1	reviewed	p.S225L	0.000	162	0%	181	32%	6	0%	benign(0.318)	tolerated(0.15)	neutral(0.341)	HMMPfam_BSP_II
MEPE	56955	genome.wustl.edu	37	4	88759787	88759787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020203.3	+1	validated	p.F20V	0.998	231	0%	212	28.3%	0	-	benign(0.053)	tolerated(0.07)	neutral(0.323)	NULL
PKD2	5311	genome.wustl.edu	37	4	88986978	88986978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000297.2	+1	reviewed	p.E769*	1.000	203	0%	188	30.9%	5	40%	-	-	-	superfamily_SSF47473
ABCG2	9429	genome.wustl.edu	37	4	89028400	89028400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004827.2	-1	reviewed	p.L405M	0.609	91	0%	87	24.1%	0	-	benign(0.057)	tolerated(0.63)	neutral(0.007)	HMMPfam_ABC2_membrane
ABCG2	9429	genome.wustl.edu	37	4	89052326	89052326	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004827.2	-1	reviewed	p.L140V	0.269	364	0%	382	18.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
HERC6	55008	genome.wustl.edu	37	4	89352321	89352321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017912.3	+1	validated	p.F705C	1.000	205	0%	181	29.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC6	55008	genome.wustl.edu	37	4	89361066	89361066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017912.3	+1	validated	p.V866I	0.981	66	0%	73	34.2%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC3	8916	genome.wustl.edu	37	4	89588600	89588600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014606.1	+1	provisional	p.E468D	1.000	104	0%	87	23%	1	0%	benign(0.001)	tolerated(1)	-	NULL
HERC3	8916	genome.wustl.edu	37	4	89601364	89601364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014606.1	+1	provisional	p.N773H	0.999	91	0%	90	33.3%	1	100%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC3	8916	genome.wustl.edu	37	4	89625758	89625758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014606.1	+1	provisional	p.L981I	1.000	50	0%	98	26.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
FAM13A	10144	genome.wustl.edu	37	4	89709043	89709043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014883.2	-1	validated	p.L378I	1.000	278	0.4%	243	23.5%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89950689	89950689	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014883.2	-1	validated	p.E47*	1.000	297	0%	227	25.6%	2	0%	-	-	-	superfamily_Rho_GAP
GPRIN3	285513	genome.wustl.edu	37	4	90169213	90169213	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198281.2	-1	validated	p.D683	0.992	74	0%	66	33.3%	3	0%	-	-	-	NULL
MMRN1	22915	genome.wustl.edu	37	4	90855963	90855963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007351.2	+1	reviewed	p.L378I	1.000	171	0%	149	30.9%	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90857582	90857582	+	Missense_Mutation	SNP	C	C	A	rs185952075	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007351.2	+1	reviewed	p.F917L	0.974	96	0%	83	30.1%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
TMSB4XP8	7117	genome.wustl.edu	37	4	91760159	91760159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183049.2	-1	validated	p.I10	0.993	206	0%	156	25%	14	0%	-	-	-	HMMPfam_Thymosin,HMMSmart_THY
PDLIM5	10611	genome.wustl.edu	37	4	95575654	95575654	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006457.3	+1	reviewed	p.E443*	1.000	297	0%	251	26.3%	3	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
C4orf37	285555	genome.wustl.edu	37	4	98761986	98761986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174952.2	-1	validated	p.R381I	0.651	210	0%	185	11.9%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
C4orf37	285555	genome.wustl.edu	37	4	98865070	98865070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174952.2	-1	validated	p.R341I	0.008	241	0%	214	29.4%	0	-	benign(0.031)	deleterious(0.01)	neutral(0.407)	NULL
C4orf37	285555	genome.wustl.edu	37	4	98902414	98902414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174952.2	-1	validated	p.R223Q	0.849	531	0%	410	32.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ADH6	130	genome.wustl.edu	37	4	100126168	100126168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102470.1	-1	reviewed	p.E339D	0.960	367	0%	428	27.1%	0	-	benign(0.046)	deleterious(0.02)	neutral(0.386)	superfamily_GroES_like
ADH1B	125	genome.wustl.edu	37	4	100235228	100235228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000668.4	-1	reviewed	p.G193D	1.000	453	0%	461	32.8%	0	-	benign(0.387)	deleterious(0.02)	deleterious(0.507)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
ADH7	131	genome.wustl.edu	37	4	100334325	100334325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000673.4	-1	reviewed	p.R381*	0.078	399	0%	278	30.2%	0	-	-	-	-	superfamily_GroES_like
RG9MTD2	93587	genome.wustl.edu	37	4	100475027	100475027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134665.1	-1	validated	p.T187M	1.000	144	0%	144	13.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA_m1G_MT
MTTP	4547	genome.wustl.edu	37	4	100534268	100534268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000253.2	+1	reviewed	p.G730*	1.000	105	0%	93	28%	0	-	-	-	-	NULL
DAPP1	27071	genome.wustl.edu	37	4	100774455	100774455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014395.2	+1	validated	p.A147T	0.999	85	0%	82	30.5%	3	100%	benign(0.02)	tolerated(0.49)	neutral(0.011)	superfamily_SH2 domain
DNAJB14	79982	genome.wustl.edu	37	4	100826754	100826754	+	Missense_Mutation	SNP	G	G	A	rs149618769	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031723.2	-1	validated	p.S281F	1.000	170	0%	149	32.9%	1	0%	possibly_damaging(0.712)	tolerated(0.06)	deleterious(0.580)	HMMPfam_DUF1977
EMCN	51705	genome.wustl.edu	37	4	101338287	101338287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016242.3	-1	validated	p.N226H	0.995	313	0%	187	31.6%	2	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Endomucin
PPP3CA	5530	genome.wustl.edu	37	4	102117235	102117235	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000944.4	-1	validated	p.E33*	1.000	189	0%	138	31.2%	2	100%	-	-	-	superfamily_Metallo-dependent phosphatases
MIR1255A	100302193	genome.wustl.edu	37	4	102251532	102251532	+	RNA	SNP	C	C	A	rs192307370	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000408338	-1	known	NULL	0.001	31	0%	31	29%	0	-	-	-	-	-
CISD2	493856	genome.wustl.edu	37	4	103806586	103806586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008388.3	+1	reviewed	p.T106M	1.000	62	0%	53	39.6%	32	37.5%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMSmart_SM00704,HMMPfam_zf-CDGSH
SLC9B2	133308	genome.wustl.edu	37	4	103979035	103979035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178833.4	-1	validated	p.F122C	0.995	239	0%	262	29.8%	1	0%	probably_damaging(0.973)	tolerated(0.2)	neutral(0.464)	HMMPfam_Na_H_Exchanger
CENPE	1062	genome.wustl.edu	37	4	104080192	104080192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001813.2	-1	validated	p.S859L	0.000	237	0%	186	22.6%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
TACR3	6870	genome.wustl.edu	37	4	104511013	104511013	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001059.1	-1	reviewed	p.S408	0.978	429	0%	314	27.4%	0	-	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106155340	106155340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127208.1	+1	validated	p.E81*	0.896	307	0%	373	24.4%	0	-	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106156748	106156748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127208.1	+1	validated	p.R550Q	0.000	312	0%	253	34.8%	1	0%	benign(0.276)	tolerated(0.96)	neutral(0.029)	NULL
ARHGEF38	54848	genome.wustl.edu	37	4	106473935	106473935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017700.1	+1	validated	p.E5*	0.995	124	0%	109	19.3%	1	100%	-	-	-	NULL
INTS12	57117	genome.wustl.edu	37	4	106607862	106607862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142471.1	-1	validated	p.R264I	1.000	145	0%	106	31.1%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GSTCD	79807	genome.wustl.edu	37	4	106640330	106640330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031720.2	+1	validated	p.E180D	0.778	351	0%	324	17%	1	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_Glutathione S-transferase (GST) C-terminal domain
GSTCD	79807	genome.wustl.edu	37	4	106647940	106647940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031720.2	+1	validated	p.D367N	0.050	292	0%	227	30%	2	50%	benign(0.028)	deleterious(0.01)	neutral(0.407)	NULL
NPNT	255743	genome.wustl.edu	37	4	106861330	106861330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033047.2	+1	validated	p.D202N	1.000	263	0%	258	32.9%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Growth factor receptor domain
NPNT	255743	genome.wustl.edu	37	4	106890054	106890054	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033047.2	+1	validated	p.V535	1.000	78	0%	86	37.2%	3	66.6%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
TBCK	93627	genome.wustl.edu	37	4	107163689	107163689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033115.3	-1	validated	p.R307*	1.000	105	0%	135	20.7%	3	0%	-	-	-	NULL
DKK2	27123	genome.wustl.edu	37	4	107845738	107845738	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014421.2	-1	reviewed	p.L165	0.979	461	0%	356	33.1%	1	0%	-	-	-	NULL
SGMS2	166929	genome.wustl.edu	37	4	108824391	108824391	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136257.1	+1	reviewed	p.L192	0.986	295	0%	271	27.3%	0	-	-	-	-	NULL
OSTC	58505	genome.wustl.edu	37	4	109571817	109571817	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021227.2	+1	validated	p.E2	1.000	23	0%	28	32.1%	151	41%	-	-	-	HMMPfam_DUF2055
COL25A1	84570	genome.wustl.edu	37	4	109861724	109861724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198721.1	-1	validated	p.D215Y	1.000	121	0%	125	28.8%	0	-	probably_damaging(0.997)	-	-	HMMPfam_Collagen
LOC389217	389217	genome.wustl.edu	37	4	110474711	110474711	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001717714.1	-1	model	p.T193	0.966	76	0%	65	26.2%	0	-	-	-	-	HMMPfam_NAP
CCDC109B	55013	genome.wustl.edu	37	4	110605624	110605624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017918.4	+1	validated	p.S213L	0.030	119	0%	89	33.7%	38	21%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMPfam_DUF607
CFI	3426	genome.wustl.edu	37	4	110663746	110663746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000204.3	-1	reviewed	p.E479K	0.004	71	0%	102	26.5%	173	56%	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GAR1	54433	genome.wustl.edu	37	4	110740182	110740182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018983.3	+1	reviewed	p.N132S	1.000	222	0%	148	20.3%	1	0%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_Gar1
RRH	10692	genome.wustl.edu	37	4	110763706	110763706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006583.2	+1	reviewed	p.P268T	1.000	443	0.2%	302	32.8%	0	-	possibly_damaging(0.951)	tolerated(0.06)	deleterious(0.717)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EGF	1950	genome.wustl.edu	37	4	110885592	110885592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001963.4	+1	reviewed	p.D492Y	1.000	390	0%	324	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF63825
EGF	1950	genome.wustl.edu	37	4	110929323	110929323	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001963.4	+1	reviewed	p.E1103*	0.995	63	0%	52	17.3%	1	0%	-	-	-	NULL
ENPEP	2028	genome.wustl.edu	37	4	111469462	111469462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001977.3	+1	validated	p.E711K	0.022	90	0%	71	26.8%	0	-	benign(0.03)	tolerated(0.22)	neutral(0.044)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113468548	113468548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000505019	-1	known	p.L1831M	1.000	101	0%	77	37.7%	1	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LARP7	51574	genome.wustl.edu	37	4	113568088	113568088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015454.1	+1	validated	p.E177K	1.000	220	0.5%	221	37.1%	4	25%	possibly_damaging(0.729)	tolerated(0.11)	deleterious(0.537)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ANK2	287	genome.wustl.edu	37	4	114120171	114120171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001148.4	+1	reviewed	p.G97E	1.000	109	0%	51	29.4%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114275745	114275745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001148.4	+1	reviewed	p.R1991W	0.897	481	0%	454	52.2%	0	-	probably_damaging(1)	-	-	NULL
CAMK2D	817	genome.wustl.edu	37	4	114376915	114376915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001221.3	-1	reviewed	p.I499T	1.000	198	0%	141	22%	1	0%	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
UGT8	7368	genome.wustl.edu	37	4	115544424	115544424	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128174.1	+1	validated	p.E130*	0.999	169	0%	180	35.6%	4	0%	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TRAM1L1	133022	genome.wustl.edu	37	4	118006227	118006227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152402.2	-1	validated	p.R108I	0.616	150	3.3%	118	25.4%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_TRAM1
SEC24D	9871	genome.wustl.edu	37	4	119718950	119718950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014822.2	-1	reviewed	p.R310Q	1.000	87	0%	54	29.6%	20	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_beta-sandwich domain of Sec23/24
PRDM5	11107	genome.wustl.edu	37	4	121719480	121719480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018699.2	-1	reviewed	p.K377T	1.000	155	0%	124	24.2%	0	-	benign(0.074)	tolerated(0.15)	neutral(0.246)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNIP3	79931	genome.wustl.edu	37	4	122075732	122075732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128843.1	-1	validated	p.E156K	0.973	169	0%	136	27.2%	0	-	possibly_damaging(0.858)	tolerated(0.2)	neutral(0.380)	NULL
QRFPR	84109	genome.wustl.edu	37	4	122250549	122250549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198179.2	-1	validated	p.E406K	0.002	435	0%	280	30.4%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
QRFPR	84109	genome.wustl.edu	37	4	122253995	122253995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198179.2	-1	validated	p.E260*	1.000	225	0.4%	132	25.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
EXOSC9	5393	genome.wustl.edu	37	4	122734501	122734501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034194.1	+1	validated	p.E314*	1.000	324	0%	257	25.7%	7	0%	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123192604	123192604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015312.3	+1	reviewed	p.R2642Q	1.000	146	0%	123	22%	1	0%	possibly_damaging(0.91)	tolerated(0.3)	neutral(0.391)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123283345	123283345	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000306802	+1	known	p.S1363L	0.178	344	0%	239	20.1%	9	44.4%	-	-	-	HMMPfam_FSA_C
ADAD1	132612	genome.wustl.edu	37	4	123302231	123302231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139243.3	+1	validated	p.F86C	1.000	241	0%	134	26.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SPATA5	166378	genome.wustl.edu	37	4	123855555	123855555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145207.2	+1	validated	p.D270G	0.000	167	0%	173	22%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
SPATA5	166378	genome.wustl.edu	37	4	123868422	123868422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145207.2	+1	validated	p.A498V	1.000	98	0%	102	32.4%	1	0%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125591538	125591538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020337.2	-1	validated	p.F965C	1.000	189	0%	237	24.5%	3	66.6%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD50	57182	genome.wustl.edu	37	4	125592223	125592223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020337.2	-1	validated	p.R737*	0.979	159	0%	194	34%	3	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD50	57182	genome.wustl.edu	37	4	125593603	125593603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020337.2	-1	validated	p.E277*	1.000	54	0%	49	22.4%	0	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126240948	126240948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.D1128Y	1.000	345	0%	210	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126329733	126329733	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.R1902*	0.993	216	0%	157	33.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126336699	126336699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.V2194A	0.037	310	0%	216	24.1%	0	-	benign(0.058)	tolerated(0.39)	neutral(0.019)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126355566	126355566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.K2395N	0.017	229	0%	152	38.8%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126371065	126371065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.S2965N	1.000	188	0%	108	20.4%	0	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126412296	126412296	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024582.4	+1	validated	p.P4773	0.000	129	0%	101	32.7%	1	0%	-	-	-	NULL
INTU	27152	genome.wustl.edu	37	4	128577840	128577840	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015693.3	+1	validated	p.I244	1.000	138	0%	154	27.9%	3	0%	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
INTU	27152	genome.wustl.edu	37	4	128629737	128629737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000510766	+1	known	p.E60*	1.000	73	0%	55	27.3%	0	-	probably_damaging(0.983)	tolerated(0.16)	deleterious(0.488)	NULL
HSPA4L	22824	genome.wustl.edu	37	4	128729189	128729189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014278.2	+1	provisional	p.F428C	1.000	143	0%	148	19.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HSP70,superfamily_SSF100920
HSPA4L	22824	genome.wustl.edu	37	4	128753852	128753852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014278.2	+1	provisional	p.F781L	0.996	573	0%	407	23.3%	1	0%	benign(0)	tolerated(0.74)	neutral(0.002)	superfamily_SSF100934
SCLT1	132320	genome.wustl.edu	37	4	129913344	129913344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144643.2	-1	validated	p.E222K	0.975	146	0%	161	16.8%	0	-	probably_damaging(0.967)	tolerated(0.12)	deleterious(0.669)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134072994	134072994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032961.1	+1	reviewed	p.Q567K	1.000	34	0%	41	22%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134084242	134084242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032961.1	+1	reviewed	p.R970C	1.000	147	0.7%	139	32.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138452946	138452946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019035.3	-1	reviewed	p.Q99H	1.000	392	0%	292	26.4%	0	-	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
NAA15	80155	genome.wustl.edu	37	4	140264094	140264094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_057175.3	+1	validated	p.E173*	1.000	121	0%	101	34.7%	0	-	-	-	-	superfamily_TPR-like
SETD7	80854	genome.wustl.edu	37	4	140444506	140444506	+	Splice_Site	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030648.2	-1	validated	e5+2	1.000	141	0%	125	22.4%	0	-	-	-	-	-
CLGN	1047	genome.wustl.edu	37	4	141321545	141321545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130675.1	-1	reviewed	p.F220L	1.000	139	0%	129	30.2%	2	0%	benign(0.406)	tolerated(0.56)	neutral(0.137)	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases
ELMOD2	255520	genome.wustl.edu	37	4	141458692	141458692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153702.2	+1	validated	p.M132I	0.028	165	0%	182	26.9%	11	63.6%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_ELMO_CED12
ELMOD2	255520	genome.wustl.edu	37	4	141461379	141461379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153702.2	+1	validated	p.A153T	1.000	190	0%	166	25.3%	13	61.5%	benign(0.344)	tolerated(0.16)	neutral(0.168)	HMMPfam_ELMO_CED12
INPP4B	8821	genome.wustl.edu	37	4	143130147	143130147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101669.1	-1	reviewed	p.S290Y	1.000	168	0%	129	32.6%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143159140	143159140	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101669.1	-1	reviewed	p.L238*	1.000	110	0%	97	24.7%	1	0%	-	-	-	NULL
USP38	84640	genome.wustl.edu	37	4	144118978	144118978	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032557.5	+1	validated	p.V317	0.996	130	0%	154	27.9%	0	-	-	-	-	NULL
USP38	84640	genome.wustl.edu	37	4	144127259	144127259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032557.5	+1	validated	p.S428Y	1.000	147	0%	170	26.5%	1	0%	possibly_damaging(0.539)	tolerated(0.32)	neutral(0.206)	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144465084	144465084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003601.2	+1	reviewed	p.V711I	1.000	406	0%	355	31.3%	9	44.4%	benign(0.003)	tolerated(0.35)	neutral(0.021)	superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144465091	144465091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003601.2	+1	reviewed	p.N713T	1.000	403	0%	344	20.9%	9	11.1%	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_SSF52540
GYPB	2994	genome.wustl.edu	37	4	144922437	144922437	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002100.3	-1	reviewed	e2-1	0.086	278	0%	193	17.1%	0	-	-	-	-	-
HHIP	64399	genome.wustl.edu	37	4	145635493	145635493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022475.1	+1	reviewed	p.R514C	0.997	111	0%	90	24.4%	0	-	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	superfamily_Soluble quinoprotein glucose dehydrogenase
HHIP	64399	genome.wustl.edu	37	4	145655947	145655947	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022475.1	+1	reviewed	p.T605	0.061	183	0%	128	20.3%	1	0%	-	-	-	superfamily_EGF/Laminin
ABCE1	6059	genome.wustl.edu	37	4	146048713	146048713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040876.1	+1	reviewed	p.F596L	1.000	116	0%	84	26.2%	8	50%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
OTUD4	54726	genome.wustl.edu	37	4	146064547	146064547	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102653.1	-1	reviewed	p.K486	1.000	84	0%	56	12.5%	0	-	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146071750	146071750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102653.1	-1	reviewed	p.F327L	0.000	155	0%	122	36.1%	1	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147204409	147204409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029998.3	-1	validated	p.S261L	1.000	38	0%	53	22.6%	2	100%	benign(0)	tolerated(1)	-	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147431199	147431199	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029998.3	-1	validated	p.E62	1.000	86	0%	73	26%	1	0%	-	-	-	HMMPfam_SBF
ARHGAP10	79658	genome.wustl.edu	37	4	148778715	148778715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024605.3	+1	validated	p.K132N	1.000	52	0%	49	40.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARHGAP10	79658	genome.wustl.edu	37	4	148787875	148787875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024605.3	+1	validated	p.F204V	1.000	131	0%	105	19%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ARHGAP10	79658	genome.wustl.edu	37	4	148803082	148803082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024605.3	+1	validated	p.R345W	0.925	367	0.3%	315	21.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
DCLK2	166614	genome.wustl.edu	37	4	151023773	151023773	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040260.2	+1	validated	p.E189*	1.000	216	0%	209	25.4%	0	-	-	-	-	superfamily_Doublecortin (DC)
DCLK2	166614	genome.wustl.edu	37	4	151023851	151023851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040260.2	+1	validated	p.L215I	1.000	198	0%	191	28.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
LRBA	987	genome.wustl.edu	37	4	151789427	151789427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006726.2	-1	validated	p.R827Q	1.000	294	0%	230	28.3%	0	-	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151827521	151827521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006726.2	-1	validated	p.K510N	1.000	363	0%	323	28.5%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_ARM repeat
RPS3A	6189	genome.wustl.edu	37	4	152022212	152022212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006.3	+1	reviewed	p.F84L	1.000	72	0%	98	22.4%	391	27.6%	benign(0.037)	deleterious(0.05)	neutral(0.347)	HMMPfam_Ribosomal_S3Ae
PRSS48	345062	genome.wustl.edu	37	4	152201052	152201052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183375.2	+1	provisional	p.C53G	1.000	183	0%	213	23%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
FBXW7	55294	genome.wustl.edu	37	4	153332553	153332553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033632.2	-1	reviewed	p.D135Y	1.000	328	0%	307	26.4%	5	20%	unknown(0)	deleterious(0.02)	-	superfamily_WD40 repeat-like
TIGD4	201798	genome.wustl.edu	37	4	153691001	153691001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145720.2	-1	reviewed	p.E386*	0.781	300	0%	225	17.3%	0	-	-	-	-	NULL
ARFIP1	27236	genome.wustl.edu	37	4	153809305	153809305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025595.1	+1	validated	p.R271H	1.000	124	0%	140	27.9%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arfaptin
TRIM2	23321	genome.wustl.edu	37	4	154215584	154215584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015271.3	+1	validated	p.R245C	1.000	113	0%	90	27.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
MND1	84057	genome.wustl.edu	37	4	154318479	154318479	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032117.2	+1	validated	p.E154*	1.000	65	0%	73	31.5%	13	53.8%	-	-	-	HMMPfam_Mnd1
KIAA0922	23240	genome.wustl.edu	37	4	154479457	154479457	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015196.3	+1	validated	p.K199	0.115	274	0%	254	25.6%	0	-	-	-	-	NULL
TLR2	7097	genome.wustl.edu	37	4	154624714	154624714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003264.3	+1	reviewed	p.D219Y	0.779	180	0%	161	24.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
FGB	2244	genome.wustl.edu	37	4	155488886	155488886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005141.4	+1	reviewed	p.K211R	0.994	289	0%	234	35.5%	0	-	benign(0.184)	tolerated(0.27)	neutral(0.051)	HMMPfam_Fib_beta
FGB	2244	genome.wustl.edu	37	4	155491638	155491638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005141.4	+1	reviewed	p.H438N	1.000	202	0%	202	25.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like
FGG	2266	genome.wustl.edu	37	4	155533728	155533728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021870.2	-1	reviewed	p.L12I	0.006	194	0%	217	26.7%	0	-	benign(0.086)	deleterious(0)	neutral(0.451)	NULL
RBM46	166863	genome.wustl.edu	37	4	155720180	155720180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144979.3	+1	validated	p.S289F	1.000	152	0%	178	27%	0	-	possibly_damaging(0.821)	deleterious(0.02)	deleterious(0.694)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RBM46	166863	genome.wustl.edu	37	4	155720414	155720414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144979.3	+1	validated	p.R367I	1.000	269	0%	271	34.7%	0	-	benign(0.128)	tolerated(0.12)	neutral(0.271)	NULL
MAP9	79884	genome.wustl.edu	37	4	156296099	156296099	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039580.1	-1	validated	p.S50	1.000	227	0%	152	22.4%	0	-	-	-	-	NULL
GLRB	2743	genome.wustl.edu	37	4	158091671	158091671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000824.4	+1	reviewed	p.D429Y	1.000	282	0%	176	18.8%	2	50%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GRIA2	2891	genome.wustl.edu	37	4	158254085	158254085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000826.3	+1	reviewed	p.N333H	1.000	150	0%	116	27.6%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158257015	158257015	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000826.3	+1	reviewed	p.E487*	1.000	108	0%	65	27.7%	0	-	-	-	-	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850
TMEM144	55314	genome.wustl.edu	37	4	159133892	159133892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018342.4	+1	validated	p.N25H	0.965	261	0%	213	30%	3	33.3%	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	HMMPfam_DUF1632
RXFP1	59350	genome.wustl.edu	37	4	159533502	159533502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021634.2	+1	provisional	p.S223Y	1.000	118	0%	115	17.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_L domain-like
ETFDH	2110	genome.wustl.edu	37	4	159629631	159629631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004453.2	+1	reviewed	p.N602K	1.000	121	0%	98	15.3%	7	28.5%	probably_damaging(0.997)	tolerated(0.69)	neutral(0.468)	NULL
C4orf45	152940	genome.wustl.edu	37	4	159836477	159836477	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152543.2	-1	validated	p.K131Q	0.000	67	0%	59	40.7%	0	-	benign(0.312)	tolerated(0.56)	neutral(0.104)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160252656	160252656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014247.2	+1	validated	p.F353C	1.000	199	0%	168	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160271321	160271321	+	Missense_Mutation	SNP	C	C	A	rs186800143	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014247.2	+1	validated	p.L1088I	1.000	116	0%	68	17.6%	0	-	possibly_damaging(0.766)	deleterious(0.02)	deleterious(0.667)	NULL
NPY1R	4886	genome.wustl.edu	37	4	164246472	164246472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000909.4	-1	validated	p.D380Y	0.995	246	0%	176	25.6%	0	-	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
NPY1R	4886	genome.wustl.edu	37	4	164247027	164247027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000909.4	-1	validated	p.I227T	1.000	152	0%	155	31.6%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPY5R	4889	genome.wustl.edu	37	4	164272489	164272489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006174.2	+1	provisional	p.S355Y	0.973	181	0%	158	33.5%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM75	391714	genome.wustl.edu	37	4	165981171	165981171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000322402	+1	known	p.K291T	0.009	124	0%	172	28.5%	0	-	-	-	-	NULL
CPE	1363	genome.wustl.edu	37	4	166408640	166408640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001873.2	+1	reviewed	p.E342K	1.000	173	0%	160	30.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
TLL1	7092	genome.wustl.edu	37	4	166964437	166964437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012464.3	+1	reviewed	p.G464C	1.000	685	0%	528	11.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SPOCK3	50859	genome.wustl.edu	37	4	167675729	167675729	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016950.2	-1	validated	p.N290	0.993	142	0%	146	26.7%	0	-	-	-	-	HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand
SPOCK3	50859	genome.wustl.edu	37	4	167983643	167983643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016950.2	-1	validated	p.A82T	1.000	216	0%	179	27.9%	0	-	possibly_damaging(0.907)	deleterious(0.03)	deleterious(0.725)	NULL
ANXA10	11199	genome.wustl.edu	37	4	169102890	169102890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007193.3	+1	reviewed	p.H261N	1.000	142	0%	69	37.7%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	superfamily_Annexin,HMMPfam_Annexin
DDX60	55601	genome.wustl.edu	37	4	169208246	169208246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017631.5	-1	validated	p.R431I	0.725	285	0.4%	253	28.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NEK1	4750	genome.wustl.edu	37	4	170321696	170321696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012224.1	-1	validated	p.F1202L	1.000	57	0%	45	13.3%	0	-	benign(0.054)	tolerated(0.15)	neutral(0.244)	NULL
NEK1	4750	genome.wustl.edu	37	4	170327820	170327820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012224.1	-1	validated	p.R1073C	0.011	99	0%	90	38.9%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170610332	170610332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173872.2	+1	validated	p.K186T	1.000	174	0%	123	31.7%	6	33.3%	benign(0.002)	tolerated(0.08)	neutral(0.300)	superfamily_Cl-channel_core
C4orf27	54969	genome.wustl.edu	37	4	170652934	170652934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017867.2	-1	validated	p.F277C	0.900	268	0%	203	20.7%	57	38.5%	probably_damaging(0.969)	tolerated(0.08)	deleterious(0.712)	HMMPfam_DUF2228
GALNT7	51809	genome.wustl.edu	37	4	174213410	174213410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017423.2	+1	reviewed	p.D247N	1.000	85	0%	58	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT7	51809	genome.wustl.edu	37	4	174235223	174235223	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017423.2	+1	reviewed	p.R502*	1.000	261	0%	268	23.9%	1	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
HMGB2	3148	genome.wustl.edu	37	4	174254125	174254125	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130688.1	-1	reviewed	p.C106*	1.000	269	0%	172	11.6%	136	0.7%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
FBXO8	26269	genome.wustl.edu	37	4	175162308	175162308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012180.2	-1	reviewed	p.F173C	1.000	72	0%	85	28.2%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
CEP44	80817	genome.wustl.edu	37	4	175224997	175224997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145314.1	+1	validated	p.Q127H	0.001	68	0%	60	35%	0	-	possibly_damaging(0.447)	tolerated(0.1)	neutral(0.432)	NULL
CEP44	80817	genome.wustl.edu	37	4	175231080	175231080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145314.1	+1	validated	p.S253L	0.000	77	1.3%	74	29.7%	0	-	benign(0)	tolerated(1)	-	NULL
ADAM29	11086	genome.wustl.edu	37	4	175897197	175897197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130703.1	+1	reviewed	p.R174Q	0.000	196	0%	197	26.4%	0	-	benign(0.158)	tolerated(1)	neutral(0.014)	NULL
ADAM29	11086	genome.wustl.edu	37	4	175897437	175897437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130703.1	+1	reviewed	p.K254T	0.000	263	0%	225	35.6%	0	-	possibly_damaging(0.446)	tolerated(0.36)	neutral(0.166)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
GPM6A	2823	genome.wustl.edu	37	4	176573136	176573136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005277.3	-1	validated	p.F130L	0.998	90	0%	65	30.8%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	HMMPfam_Myelin_PLP
WDR17	116966	genome.wustl.edu	37	4	177049892	177049892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170710.4	+1	reviewed	p.S289Y	1.000	78	0%	60	33.3%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMSmart_WD40,superfamily_Amine_DH_B_like
WDR17	116966	genome.wustl.edu	37	4	177056310	177056310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170710.4	+1	reviewed	p.L408I	1.000	246	0%	172	33.7%	0	-	benign(0.095)	tolerated(0.49)	neutral(0.018)	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,HMMPfam_WD40
WDR17	116966	genome.wustl.edu	37	4	177089834	177089834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170710.4	+1	reviewed	p.A1040V	0.926	103	0%	94	22.3%	0	-	benign(0)	tolerated(1)	-	NULL
SPATA4	132851	genome.wustl.edu	37	4	177106011	177106011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144644.2	-1	provisional	p.E280*	0.007	128	0%	101	28.7%	0	-	-	-	-	NULL
SPATA4	132851	genome.wustl.edu	37	4	177114120	177114120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144644.2	-1	provisional	p.L152F	0.768	93	0%	86	16.3%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_DUF1042
NEIL3	55247	genome.wustl.edu	37	4	178274615	178274615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018248.2	+1	validated	p.K398T	0.975	221	0%	164	33.5%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
AGA	175	genome.wustl.edu	37	4	178355562	178355562	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000027.3	-1	reviewed	p.G260	0.001	227	0%	254	39%	54	38.8%	-	-	-	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ODZ3	55714	genome.wustl.edu	37	4	183675945	183675945	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080477.1	+1	provisional	p.S1475	0.998	119	0%	85	30.6%	0	-	-	-	-	HMMPfam_NHL,superfamily_ConA_like_lec_gl,superfamily_SSF101898,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183714437	183714437	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080477.1	+1	provisional	p.I2204	1.000	165	0%	155	25.8%	0	-	-	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183714572	183714572	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080477.1	+1	provisional	p.F2249L	0.991	127	0%	105	32.4%	0	-	possibly_damaging(0.747)	deleterious(0.03)	deleterious(0.639)	NULL
CDKN2AIP	55602	genome.wustl.edu	37	4	184367801	184367801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017632.2	+1	provisional	p.K322E	1.000	63	0%	66	28.8%	5	60%	unknown(0)	deleterious(0)	-	NULL
STOX2	56977	genome.wustl.edu	37	4	184930780	184930780	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020225.1	+1	provisional	p.S263	0.996	100	0%	65	32.3%	0	-	-	-	-	NULL
ENPP6	133121	genome.wustl.edu	37	4	185033894	185033894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153343.3	-1	validated	p.F308L	1.000	225	0%	146	17.8%	0	-	probably_damaging(0.987)	tolerated(0.19)	deleterious(0.486)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP6	133121	genome.wustl.edu	37	4	185074800	185074800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153343.3	-1	validated	p.D110Y	1.000	79	0%	91	30.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
IRF2	3660	genome.wustl.edu	37	4	185339800	185339800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002199.3	-1	reviewed	p.A84P	1.000	103	0%	99	19.2%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
IRF2	3660	genome.wustl.edu	37	4	185340702	185340702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000509274	-1	known	p.P78S	0.995	123	0%	132	19.7%	8	50%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
CCDC111	201973	genome.wustl.edu	37	4	185593329	185593329	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152683.2	+1	validated	p.N187H	1.000	115	0%	121	30.6%	0	-	-	-	-	HMMPfam_DNA_primase_S
MLF1IP	79682	genome.wustl.edu	37	4	185621975	185621975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024629.3	-1	validated	p.R329W	1.000	102	0%	86	23.3%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MLF1IP	79682	genome.wustl.edu	37	4	185622020	185622020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024629.3	-1	validated	p.E314K	0.163	75	0%	70	28.6%	4	50%	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
ACSL1	2180	genome.wustl.edu	37	4	185681557	185681557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001995.2	-1	reviewed	p.R579Q	0.998	654	0%	597	26%	9	44.4%	possibly_damaging(0.539)	deleterious(0.01)	deleterious(0.588)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSL1	2180	genome.wustl.edu	37	4	185689574	185689574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001995.2	-1	reviewed	p.G342R	1.000	145	0%	129	31%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSL1	2180	genome.wustl.edu	37	4	185724638	185724638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001995.2	-1	reviewed	p.R11*	1.000	60	0%	64	29.7%	10	0%	-	-	-	NULL
SNX25	83891	genome.wustl.edu	37	4	186244868	186244868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031953.2	+1	validated	p.F391L	1.000	148	0%	125	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
UFSP2	55325	genome.wustl.edu	37	4	186336376	186336376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018359.3	-1	validated	p.K206T	0.000	119	0%	142	27.5%	2	50%	benign(0.014)	tolerated(0.76)	neutral(0.002)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379440	186379440	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152775.3	-1	validated	p.L767	0.999	107	0%	98	29.6%	0	-	-	-	-	NULL
CCDC110	256309	genome.wustl.edu	37	4	186382295	186382295	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152775.3	-1	validated	p.E86*	1.000	124	0%	112	18.8%	0	-	-	-	-	NULL
CCDC110	256309	genome.wustl.edu	37	4	186392141	186392141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152775.3	-1	validated	p.N25H	0.843	88	0%	72	20.8%	0	-	possibly_damaging(0.844)	deleterious(0)	deleterious(0.768)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186570727	186570727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021069.4	-1	reviewed	p.D155N	1.000	86	0%	81	12.3%	76	21%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TLR3	7098	genome.wustl.edu	37	4	187005882	187005882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003265.2	+1	reviewed	p.D857A	1.000	73	0%	83	27.7%	8	75%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
CYP4V2	285440	genome.wustl.edu	37	4	187131629	187131629	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207352.3	+1	reviewed	p.K471T	0.998	220	0%	218	24.3%	11	18.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome P450
KLKB1	3818	genome.wustl.edu	37	4	187178433	187178433	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000892.3	+1	reviewed	p.E547*	1.000	287	0%	182	30.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
F11	2160	genome.wustl.edu	37	4	187201532	187201532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000128.3	+1	reviewed	p.E341K	0.000	203	0%	240	20%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1
F11	2160	genome.wustl.edu	37	4	187206880	187206880	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000128.3	+1	reviewed	p.E465*	0.999	199	0%	159	23.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MTNR1A	4543	genome.wustl.edu	37	4	187455704	187455704	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005958.3	-1	reviewed	p.I64	0.967	58	0%	55	25.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAT1	2195	genome.wustl.edu	37	4	187509797	187509797	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000512772	-1	known	p.R352*	0.220	54	0%	61	14.8%	115	6.9%	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187517875	187517875	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000512772	-1	known	p.R41*	0.617	90	0%	92	23.9%	24	66.6%	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187532854	187532854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005245.3	-1	reviewed	p.I3180S	0.999	89	0%	52	34.6%	1	0%	benign(0.358)	deleterious(0)	deleterious(0.558)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187539951	187539951	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005245.3	-1	reviewed	p.R2597*	0.986	106	0%	54	38.9%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187557284	187557284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005245.3	-1	reviewed	p.E1360*	1.000	113	0%	139	28.1%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628521	187628521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005245.3	-1	reviewed	p.E821K	0.989	218	0%	211	27%	4	50%	possibly_damaging(0.866)	tolerated(0.72)	neutral(0.337)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
LRRC14B	389257	genome.wustl.edu	37	5	195133	195133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080478.1	+1	provisional	p.A404T	0.997	7	0.000	7	0.571	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RNI-like
AHRR	57491	genome.wustl.edu	37	5	353972	353972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020731.3	+1	reviewed	p.L68F	1.000	21	0%	43	27.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HLH,HMMSmart_SM00353
SLC6A3	6531	genome.wustl.edu	37	5	1432663	1432663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001044.4	-1	reviewed	p.S190L	0.987	33	0%	68	17.6%	0	-	benign(0.253)	tolerated(0.58)	neutral(0.031)	HMMPfam_SNF
SLC6A3	6531	genome.wustl.edu	37	5	1443034	1443034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001044.4	-1	reviewed	p.N93K	0.588	42	0%	60	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1
ADAMTS16	170690	genome.wustl.edu	37	5	5239993	5239993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139056.2	+1	reviewed	p.E826D	1.000	260	0%	189	28%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_ADAM_spacer1
KIAA0947	23379	genome.wustl.edu	37	5	5461834	5461834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015325.1	+1	validated	p.L796S	0.000	81	0%	97	20.6%	0	-	possibly_damaging(0.664)	deleterious(0.01)	deleterious(0.641)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462263	5462263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015325.1	+1	validated	p.S939Y	0.000	158	0%	148	19.6%	0	-	benign(0.34)	tolerated(0.22)	neutral(0.149)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464048	5464048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015325.1	+1	validated	p.I1534N	0.000	115	0%	108	10.2%	0	-	benign(0.087)	tolerated(0.17)	neutral(0.066)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464080	5464080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015325.1	+1	validated	p.K1545Q	0.438	111	0%	103	23.3%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	NULL
NSUN2	54888	genome.wustl.edu	37	5	6620391	6620391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017755.4	-1	validated	p.D215N	1.000	89	0%	153	18.3%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
LOC442132	442132	genome.wustl.edu	37	5	7305213	7305213	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_040018.2	-1	model	NULL	0.112	42	0%	39	25.6%	0	-	-	-	-	-
ADCY2	108	genome.wustl.edu	37	5	7706894	7706894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020546.2	+1	reviewed	p.R383C	1.000	137	0.7%	168	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY2	108	genome.wustl.edu	37	5	7766820	7766820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020546.2	+1	reviewed	p.E705D	0.064	266	0%	243	23.5%	1	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
MTRR	4552	genome.wustl.edu	37	5	7895863	7895863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024010.2	+1	reviewed	p.R552Q	0.947	390	0%	251	24.3%	11	36.3%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9337844	9337844	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003966.2	-1	reviewed	p.E69*	1.000	196	0%	138	21%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MARCH6	10299	genome.wustl.edu	37	5	10430095	10430095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005885.2	+1	provisional	p.Q866R	1.000	128	0%	117	24.8%	19	36.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ROPN1L	83853	genome.wustl.edu	37	5	10450114	10450114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031916.3	+1	reviewed	p.K102N	0.022	139	0%	129	10.9%	4	0%	possibly_damaging(0.637)	tolerated(0.08)	deleterious(0.523)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13719138	13719138	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.E4118*	1.000	142	0%	134	35.8%	1	100%	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13753429	13753429	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.T3595	0.967	307	0%	297	33.7%	0	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13754320	13754320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.R3516I	1.000	308	0%	298	23.8%	1	100%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13762932	13762932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.E3394K	1.000	142	0%	129	25.6%	0	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13769652	13769652	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.A3226	0.280	183	0%	146	28.8%	0	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13809249	13809249	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.P2552	0.000	180	0%	189	21.7%	0	-	-	-	-	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13871022	13871022	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.E1230*	1.000	213	0%	202	26.7%	0	-	-	-	-	superfamily_Spectrin
DNAH5	1767	genome.wustl.edu	37	5	13882851	13882851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.E1083G	0.334	193	0%	170	17.1%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13900515	13900515	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001369.2	-1	reviewed	p.E687*	0.790	112	0%	101	25.7%	0	-	-	-	-	HMMPfam_DHC_N1
TRIO	7204	genome.wustl.edu	37	5	14290915	14290915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007118.2	+1	validated	p.E211K	1.000	109	0%	70	12.9%	0	-	unknown(0)	tolerated(0.16)	-	superfamily_CRAL/TRIO domain
TRIO	7204	genome.wustl.edu	37	5	14387901	14387901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007118.2	+1	validated	p.R1276*	0.991	100	0%	102	28.4%	1	0%	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14471511	14471511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007118.2	+1	validated	p.L1950I	1.000	32	0%	57	31.6%	1	100%	unknown(0)	tolerated(0.41)	-	superfamily_DBL homology domain (DH-domain)
TRIO	7204	genome.wustl.edu	37	5	14479436	14479436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007118.2	+1	validated	p.E2074K	1.000	76	0%	50	22%	2	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FAM105A	54491	genome.wustl.edu	37	5	14602334	14602334	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019018.2	+1	validated	p.R131*	0.440	87	0%	112	29.5%	1	0%	-	-	-	NULL
FAM105A	54491	genome.wustl.edu	37	5	14610388	14610388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019018.2	+1	validated	p.E346K	0.999	40	0%	43	25.6%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000249556	0	genome.wustl.edu	37	5	14652560	14652560	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000515374	+1	novel	NULL	1.000	144	0%	186	18.3%	1	0%	-	-	-	-
ENSG00000249556	0	genome.wustl.edu	37	5	14652762	14652762	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000515374	+1	novel	NULL	1.000	88	0%	144	32.6%	574	0%	-	-	-	-
FAM105B	90268	genome.wustl.edu	37	5	14690287	14690287	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138348.4	+1	validated	p.N245T	0.774	157	0%	138	28.3%	3	100%	benign(0.05)	tolerated(0.55)	neutral(0.010)	NULL
ANKH	56172	genome.wustl.edu	37	5	14713672	14713672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054027.4	-1	reviewed	p.V416M	0.920	31	0%	21	33.3%	25	4%	benign(0.06)	deleterious(0.02)	neutral(0.387)	NULL
MARCH11	441061	genome.wustl.edu	37	5	16091049	16091049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102562.1	-1	provisional	p.L279I	1.000	53	0%	61	29.5%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
FAM134B	54463	genome.wustl.edu	37	5	16475220	16475220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000510362	-1	known	p.E95*	0.533	213	0%	250	28.4%	4	25%	benign(0.024)	tolerated(0.07)	neutral(0.320)	NULL
MYO10	4651	genome.wustl.edu	37	5	16701923	16701923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012334.2	-1	validated	p.E861*	0.637	65	0%	85	24.7%	4	0%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16755002	16755002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012334.2	-1	validated	p.L622V	1.000	46	0%	40	22.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
CDH18	1016	genome.wustl.edu	37	5	19473477	19473477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004934.3	-1	reviewed	p.R744I	1.000	269	0.4%	209	27.3%	0	-	possibly_damaging(0.675)	deleterious(0)	deleterious(0.684)	HMMPfam_Cadherin_C
CDH18	1016	genome.wustl.edu	37	5	19571921	19571921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004934.3	-1	reviewed	p.K340N	1.000	219	0%	126	25.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	21755706	21755706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004061.3	-1	reviewed	p.L627F	1.000	228	0%	180	30%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDH12	1010	genome.wustl.edu	37	5	21765152	21765152	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004061.3	-1	reviewed	p.E484*	1.000	305	0%	175	24.6%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
PRDM9	56979	genome.wustl.edu	37	5	23509680	23509680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020227.2	+1	provisional	p.N57K	0.996	259	0%	235	29.8%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PRDM9	56979	genome.wustl.edu	37	5	23526419	23526419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020227.2	+1	provisional	p.E408K	0.000	323	0%	242	40.9%	0	-	possibly_damaging(0.662)	tolerated(1)	neutral(0.234)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CDH10	1008	genome.wustl.edu	37	5	24487890	24487890	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006727.2	-1	reviewed	p.S750*	1.000	377	0%	315	28.3%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH10	1008	genome.wustl.edu	37	5	24487948	24487948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006727.2	-1	reviewed	p.D731N	1.000	326	0%	270	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26881672	26881672	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016279.3	-1	reviewed	p.S648*	1.000	247	0%	219	32%	0	-	-	-	-	HMMPfam_Cadherin_C
DROSHA	29102	genome.wustl.edu	37	5	31515295	31515295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013235.4	-1	validated	p.R364C	1.000	329	0%	318	30.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32108122	32108122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178140.2	+1	reviewed	p.L2801F	0.994	394	0%	355	19.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MTMR12	54545	genome.wustl.edu	37	5	32242202	32242202	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040446.1	-1	reviewed	p.E378*	0.934	99	0%	93	26.9%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
ZFR	51663	genome.wustl.edu	37	5	32355883	32355883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016107.3	-1	validated	p.D1070Y	1.000	258	0%	186	24.2%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33624433	33624433	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030955.2	-1	reviewed	p.I682	0.029	55	0%	53	32.1%	0	-	-	-	-	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33662041	33662041	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030955.2	-1	reviewed	p.D340	1.000	224	0%	161	34.8%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TTC23L	153657	genome.wustl.edu	37	5	34867007	34867007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144725.3	+1	validated	p.A225T	0.980	51	0%	32	25%	1	100%	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	superfamily_TPR-like
AGXT2	64902	genome.wustl.edu	37	5	34998865	34998865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031900.3	-1	reviewed	p.R502C	0.953	239	0%	210	33.3%	0	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	superfamily_PyrdxlP-dep_Trfase_major
UGT3A1	133688	genome.wustl.edu	37	5	35955770	35955770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152404.3	-1	validated	p.M424I	0.996	292	0%	264	33.7%	0	-	benign(0.028)	tolerated(0.06)	neutral(0.324)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT3A2	167127	genome.wustl.edu	37	5	36035913	36035913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174914.3	-1	validated	p.D487N	0.993	41	0%	60	40%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT
UGT3A2	167127	genome.wustl.edu	37	5	36049228	36049228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174914.3	-1	validated	p.K202N	0.993	455	0%	429	24.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_UDPGT,superfamily_SSF53756
LMBRD2	92255	genome.wustl.edu	37	5	36136567	36136567	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007527.1	-1	validated	p.L197	0.999	230	0%	210	26.7%	0	-	-	-	-	HMMPfam_LMBR1
NIPBL	25836	genome.wustl.edu	37	5	36962228	36962228	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133433.3	+1	reviewed	p.R154	1.000	564	0%	599	31.2%	1	0%	-	-	-	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	36995732	36995732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133433.3	+1	reviewed	p.D1044Y	1.000	173	0%	154	25.3%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37020891	37020891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133433.3	+1	reviewed	p.T1747I	1.000	354	0%	248	28.2%	4	100%	possibly_damaging(0.456)	tolerated(0.1)	neutral(0.436)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37121877	37121877	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023073.3	-1	predicted	p.L1853	0.486	244	0%	209	12.9%	2	0%	-	-	-	NULL
C5orf42	65250	genome.wustl.edu	37	5	37165735	37165735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023073.3	-1	predicted	p.R1360I	0.000	166	0%	143	32.2%	0	-	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37167256	37167256	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023073.3	-1	predicted	p.Q1311	0.225	94	0%	78	32.1%	0	-	-	-	-	NULL
C5orf42	65250	genome.wustl.edu	37	5	37169569	37169569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023073.3	-1	predicted	p.S1066L	0.000	164	0%	139	25.2%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38407068	38407068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152403.2	+1	validated	p.P323S	0.362	135	0%	133	31.6%	0	-	benign(0.008)	tolerated(0.1)	neutral(0.286)	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38407152	38407152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152403.2	+1	validated	p.L351F	0.007	104	0%	89	24.7%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMSmart_EGF
LIFR	3977	genome.wustl.edu	37	5	38506684	38506684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127671.1	-1	reviewed	p.E348*	0.998	132	0%	157	29.3%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38510602	38510602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127671.1	-1	reviewed	p.E319K	0.001	202	0%	173	23.7%	0	-	possibly_damaging(0.597)	tolerated(0.57)	neutral(0.212)	NULL
LIFR	3977	genome.wustl.edu	37	5	38527269	38527269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127671.1	-1	reviewed	p.E129*	1.000	156	0%	115	35.7%	0	-	-	-	-	superfamily_Fibronectin type III
OSMR	9180	genome.wustl.edu	37	5	38933131	38933131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003999.2	+1	reviewed	p.P842Q	0.003	452	0%	382	27%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FYB	2533	genome.wustl.edu	37	5	39202893	39202893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001465.3	-1	validated	p.F57C	0.998	147	0%	124	26.6%	1	0%	possibly_damaging(0.936)	tolerated(0.06)	deleterious(0.704)	NULL
TTC33	23548	genome.wustl.edu	37	5	40716540	40716540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012382.2	-1	validated	p.E166K	1.000	240	0%	171	26.3%	3	0%	probably_damaging(0.953)	tolerated(0.08)	deleterious(0.697)	NULL
PRKAA1	5562	genome.wustl.edu	37	5	40762891	40762891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206907.3	-1	reviewed	p.L572I	1.000	174	0%	166	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKAA1	5562	genome.wustl.edu	37	5	40762927	40762927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206907.3	-1	reviewed	p.E560*	1.000	217	0%	203	24.1%	0	-	-	-	-	NULL
CARD6	84674	genome.wustl.edu	37	5	40853621	40853621	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032587.3	+1	reviewed	p.E729	0.000	576	0%	659	27%	1	100%	-	-	-	NULL
CARD6	84674	genome.wustl.edu	37	5	40854448	40854448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032587.3	+1	reviewed	p.S1005Y	0.027	822	0%	917	29.4%	24	62.5%	benign(0.195)	deleterious(0.02)	neutral(0.402)	NULL
C7	730	genome.wustl.edu	37	5	40950023	40950023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000587.2	+1	reviewed	p.E334*	0.000	32	0%	16	37.5%	0	-	-	-	-	HMMPfam_MACPF,HMMSmart_MACPF
C7	730	genome.wustl.edu	37	5	40962230	40962230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000587.2	+1	reviewed	p.E569*	0.847	59	0%	50	22%	0	-	-	-	-	superfamily_Complement_control_module
HEATR7B2	133558	genome.wustl.edu	37	5	40998246	40998246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173489.4	-1	validated	p.R1556C	0.992	194	0%	174	25.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41039566	41039566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173489.4	-1	validated	p.F682S	0.998	49	0%	46	28.3%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41160374	41160374	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000065.2	-1	reviewed	p.F518	1.000	223	0%	190	29.5%	0	-	-	-	-	NULL
PLCXD3	345557	genome.wustl.edu	37	5	41381944	41381944	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005473.2	-1	validated	p.E266*	1.000	216	0%	195	30.3%	0	-	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCXD3	345557	genome.wustl.edu	37	5	41382006	41382006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005473.2	-1	validated	p.S245Y	1.000	229	0%	208	33.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PLC-like_Pdiesterase_TIM-brl
OXCT1	5019	genome.wustl.edu	37	5	41794836	41794836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000436.3	-1	reviewed	p.T372N	1.000	170	0%	118	29.7%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CoA_trans,superfamily_SSF100950
C5orf34	375444	genome.wustl.edu	37	5	43487109	43487109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000306862	-1	known	p.E609*	0.906	100	0%	57	35.1%	1	0%	-	-	-	NULL
MRPS30	10884	genome.wustl.edu	37	5	44812047	44812047	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016640.3	+1	reviewed	p.E260*	0.991	89	0%	61	21.3%	1	0%	-	-	-	HMMPfam_PDCD9
HCN1	348980	genome.wustl.edu	37	5	45267197	45267197	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021072.2	-1	validated	p.R593*	1.000	330	0%	267	24.3%	0	-	-	-	-	superfamily_cNMP_binding
ITGA1	3672	genome.wustl.edu	37	5	52248245	52248245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181501.1	+1	reviewed	p.F1168L	1.000	21	0%	14	50%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_INTEGRIN_ALPHA
ITGA2	3673	genome.wustl.edu	37	5	52386365	52386365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002203.3	+1	reviewed	p.R1161I	1.000	110	0%	71	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_alpha,PatternScan_INTEGRIN_ALPHA
FST	10468	genome.wustl.edu	37	5	52780941	52780941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013409.1	+1	reviewed	p.S279L	1.000	190	0%	171	27.5%	0	-	benign(0.024)	tolerated(0.33)	neutral(0.025)	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
ARL15	54622	genome.wustl.edu	37	5	53409128	53409128	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019087.2	-1	validated	p.E122	1.000	137	0%	68	22.1%	3	0%	-	-	-	HMMPfam_Arf,superfamily_SSF52540
ARL15	54622	genome.wustl.edu	37	5	53409222	53409222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019087.2	-1	validated	p.K91R	1.000	113	0%	80	21.2%	3	0%	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_Arf,superfamily_SSF52540
SNX18	112574	genome.wustl.edu	37	5	53839108	53839108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102575.1	+1	reviewed	p.S574Y	1.000	167	0%	117	28.2%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_BAR_3_WASP_bdg
GZMA	3001	genome.wustl.edu	37	5	54401341	54401341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006144.3	+1	reviewed	p.P37H	1.000	160	0%	144	20.1%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SKIV2L2	23517	genome.wustl.edu	37	5	54674269	54674269	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015360.4	+1	validated	p.K646	1.000	201	0%	132	23.5%	5	40%	-	-	-	NULL
SLC38A9	153129	genome.wustl.edu	37	5	54952599	54952599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173514.2	-1	validated	p.F234C	1.000	58	1.7%	71	36.6%	0	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	NULL
SLC38A9	153129	genome.wustl.edu	37	5	54960545	54960545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173514.2	-1	validated	p.F225V	1.000	109	0%	110	23.6%	0	-	benign(0.411)	deleterious(0.01)	deleterious(0.538)	NULL
DDX4	54514	genome.wustl.edu	37	5	55094391	55094391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024415.2	+1	validated	p.R536Q	0.799	372	0%	295	21.4%	0	-	possibly_damaging(0.435)	tolerated(0.95)	neutral(0.142)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IL6ST	3572	genome.wustl.edu	37	5	55247856	55247856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002184.2	-1	reviewed	p.E534K	1.000	124	0%	115	27.8%	0	-	benign(0.404)	tolerated(0.13)	neutral(0.383)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MAP3K1	4214	genome.wustl.edu	37	5	56160592	56160592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005921.1	+1	validated	p.R289I	1.000	187	0%	153	11.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56180520	56180520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005921.1	+1	validated	p.E1283D	1.000	100	0%	56	30.4%	0	-	benign(0.066)	deleterious(0.04)	neutral(0.353)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SETD9	133383	genome.wustl.edu	37	5	56207251	56207251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153706.3	+1	validated	p.K118N	0.732	194	0%	144	16%	1	0%	benign(0.004)	tolerated(0.31)	neutral(0.027)	NULL
MIER3	166968	genome.wustl.edu	37	5	56233420	56233420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152622.3	-1	validated	p.P141S	1.000	93	0%	88	37.5%	0	-	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	NULL
ACTBL2	345651	genome.wustl.edu	37	5	56778291	56778291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017992.2	-1	validated	p.D82N	1.000	66	0%	87	37.9%	0	-	benign(0.332)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PLK2	10769	genome.wustl.edu	37	5	57751900	57751900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006622.2	-1	validated	p.R446Q	1.000	80	0%	63	34.9%	76	40.7%	possibly_damaging(0.861)	tolerated(0.23)	neutral(0.374)	NULL
PDE4D	5144	genome.wustl.edu	37	5	58272188	58272188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001104631.1	-1	validated	p.D607N	1.000	96	0%	53	18.9%	1	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
PDE4D	5144	genome.wustl.edu	37	5	58481063	58481063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001104631.1	-1	validated	p.R237Q	1.000	78	0%	76	18.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIF2A	3796	genome.wustl.edu	37	5	61668358	61668358	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098511.1	+1	validated	p.D580	1.000	70	0%	59	18.6%	0	-	-	-	-	NULL
HTR1A	3350	genome.wustl.edu	37	5	63256583	63256583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000524.2	-1	validated	p.E322K	1.000	76	1.3%	73	35.6%	0	-	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPWD1	23398	genome.wustl.edu	37	5	64881996	64881996	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015342.2	+1	validated	p.T595	0.973	233	0%	166	16.3%	13	7.6%	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
C5orf44	80006	genome.wustl.edu	37	5	64956680	64956680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001093755.1	+1	validated	p.L285I	1.000	102	0%	101	25.7%	5	0%	possibly_damaging(0.531)	tolerated(0.13)	neutral(0.431)	HMMPfam_DUF974
NLN	57486	genome.wustl.edu	37	5	65088600	65088600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000506539	+1	known	p.F549V	0.001	48	0%	38	42.1%	0	-	-	-	-	HMMPfam_Peptidase_M3
ERBB2IP	55914	genome.wustl.edu	37	5	65288560	65288560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018695.2	+1	reviewed	p.R5Q	1.000	275	0%	251	21.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65338985	65338985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018695.2	+1	reviewed	p.E463*	1.000	240	0%	138	26.8%	0	-	-	-	-	NULL
SREK1	140890	genome.wustl.edu	37	5	65470845	65470845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077199.1	+1	validated	p.S519Y	1.000	122	0%	101	24.8%	6	33.3%	probably_damaging(0.976)	deleterious(0.05)	deleterious(0.763)	NULL
SREK1	140890	genome.wustl.edu	37	5	65473395	65473395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077199.1	+1	validated	p.R545I	1.000	437	0%	265	23%	3	0%	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67576546	67576546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181523.1	+1	reviewed	p.F275L	1.000	134	0%	170	29.4%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PIK3R1	5295	genome.wustl.edu	37	5	67586619	67586619	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181504.2	+1	reviewed	p.N21	1.000	104	0%	90	22.2%	4	75%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589618	67589618	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181523.1	+1	reviewed	p.R461*	0.484	125	0%	95	37.9%	2	50%	-	-	-	NULL
CCDC125	202243	genome.wustl.edu	37	5	68602702	68602702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176816.3	-1	validated	p.E187*	0.973	106	0%	102	31.4%	0	-	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70785437	70785437	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018429.2	+1	reviewed	p.E474*	0.002	238	0%	210	15.7%	0	-	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70806781	70806781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018429.2	+1	reviewed	p.E1288K	0.001	364	0%	395	27.3%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
BDP1	55814	genome.wustl.edu	37	5	70858142	70858142	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018429.2	+1	reviewed	p.S2513*	0.999	207	0%	183	25.1%	0	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71490164	71490164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005909.3	+1	validated	p.I328F	0.964	294	0%	271	27.7%	0	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71492025	71492025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005909.3	+1	validated	p.T948I	1.000	225	0%	227	21.1%	0	-	unknown(0)	tolerated(0.1)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493884	71493884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005909.3	+1	validated	p.D1568N	1.000	321	0%	340	14.7%	0	-	unknown(0)	deleterious(0.05)	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72189471	72189471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002270.3	+1	reviewed	p.S695Y	1.000	235	0%	198	26.3%	11	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_HEAT,superfamily_ARM repeat
ENC1	8507	genome.wustl.edu	37	5	73931356	73931356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003633.2	-1	validated	p.E319*	1.000	101	0%	130	23.8%	5	20%	-	-	-	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ENC1	8507	genome.wustl.edu	37	5	73932196	73932196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003633.2	-1	validated	p.L39V	0.391	37	0%	62	27.4%	8	12.5%	possibly_damaging(0.787)	deleterious(0.02)	deleterious(0.677)	superfamily_POZ domain,HMMPfam_BTB
FAM169A	26049	genome.wustl.edu	37	5	74096797	74096797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015566.1	-1	validated	p.K337N	1.000	295	0%	204	22.5%	0	-	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	NULL
GCNT4	51301	genome.wustl.edu	37	5	74324606	74324606	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016591.2	-1	validated	p.I419	0.871	219	0%	208	38%	0	-	-	-	-	NULL
HMGCR	3156	genome.wustl.edu	37	5	74638555	74638555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000859.2	+1	reviewed	p.K42T	1.000	99	0%	101	29.7%	6	66.6%	benign(0.025)	tolerated(0.46)	neutral(0.013)	NULL
HMGCR	3156	genome.wustl.edu	37	5	74646188	74646188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000859.2	+1	reviewed	p.K257E	1.000	144	0%	155	33.5%	1	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
HMGCR	3156	genome.wustl.edu	37	5	74646732	74646732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000859.2	+1	reviewed	p.R300I	1.000	197	0%	179	30.7%	2	100%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	NULL
POLK	51426	genome.wustl.edu	37	5	74892498	74892498	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016218.2	+1	validated	p.S660	0.000	222	0%	240	32.1%	3	33.3%	-	-	-	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75960885	75960885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006633.2	+1	validated	p.K855T	1.000	194	0%	186	25.8%	0	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75993818	75993818	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006633.2	+1	validated	p.R1405	1.000	88	0%	91	25.3%	2	100%	-	-	-	HMMPfam_RasGAP_C
F2RL1	2150	genome.wustl.edu	37	5	76129182	76129182	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005242.4	+1	validated	p.V250	1.000	106	0%	213	23.5%	18	50%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
S100Z	170591	genome.wustl.edu	37	5	76171225	76171225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130772.3	+1	validated	p.R14I	0.620	30	0%	51	11.8%	0	-	benign(0.119)	tolerated(0.18)	neutral(0.066)	HMMPfam_S_100,superfamily_EF-hand
S100Z	170591	genome.wustl.edu	37	5	76173582	76173582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130772.3	+1	validated	p.F75L	0.476	75	0%	68	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_S100_CABP,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
AGGF1	55109	genome.wustl.edu	37	5	76335460	76335460	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018046.3	+1	validated	p.P262	0.966	44	0%	52	11.5%	1	0%	-	-	-	NULL
PDE8B	8622	genome.wustl.edu	37	5	76721592	76721592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003719.2	+1	validated	p.T807P	1.000	299	0%	222	34.7%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
AP3B1	8546	genome.wustl.edu	37	5	77334942	77334942	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003664.3	-1	reviewed	p.R912*	0.421	216	0%	183	31.7%	2	0%	-	-	-	NULL
HOMER1	9456	genome.wustl.edu	37	5	78693421	78693421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004272.3	-1	validated	p.V242L	1.000	343	0%	335	27.2%	1	0%	possibly_damaging(0.61)	tolerated(0.52)	neutral(0.220)	NULL
HOMER1	9456	genome.wustl.edu	37	5	78742962	78742962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004272.3	-1	validated	p.E101*	1.000	117	0%	84	25%	0	-	-	-	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
PAPD4	167153	genome.wustl.edu	37	5	78977843	78977843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114393.1	+1	validated	p.E447K	1.000	78	0%	82	39%	4	0%	benign(0.156)	deleterious(0.01)	neutral(0.420)	superfamily_PAP/OAS1 substrate-binding domain
CMYA5	202333	genome.wustl.edu	37	5	79025892	79025892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153610.3	+1	validated	p.S435Y	0.075	566	0%	546	32.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033561	79033561	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153610.3	+1	validated	p.L2991	0.000	400	0%	300	28%	0	-	-	-	-	NULL
THBS4	7060	genome.wustl.edu	37	5	79361257	79361257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003248.4	+1	reviewed	p.R384Q	0.009	207	0%	193	25.4%	1	0%	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
SPZ1	84654	genome.wustl.edu	37	5	79616257	79616257	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032567.3	+1	validated	p.E75*	0.358	287	0%	335	29.6%	0	-	-	-	-	NULL
SPZ1	84654	genome.wustl.edu	37	5	79616454	79616454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032567.3	+1	validated	p.K140N	0.001	328	0%	332	22.6%	0	-	unknown(0)	tolerated(0.32)	-	NULL
SPZ1	84654	genome.wustl.edu	37	5	79616534	79616534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032567.3	+1	validated	p.I167T	0.001	291	0%	298	27.2%	0	-	unknown(0)	tolerated(0.67)	-	NULL
SPZ1	84654	genome.wustl.edu	37	5	79616698	79616698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032567.3	+1	validated	p.E222K	0.000	196	0%	182	29.1%	0	-	probably_damaging(0.959)	tolerated(0.15)	deleterious(0.643)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79747438	79747438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105251.1	+1	validated	p.L1173I	1.000	258	0%	149	23.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80382720	80382720	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006909.1	+1	validated	p.I446	0.956	160	0%	156	27.6%	0	-	-	-	-	superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like
ACOT12	134526	genome.wustl.edu	37	5	80655779	80655779	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130767.2	-1	validated	p.R147*	0.994	130	0%	91	20.9%	0	-	-	-	-	NULL
ATP6AP1L	92270	genome.wustl.edu	37	5	81614013	81614013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017971.1	+1	provisional	p.S190L	0.027	117	0%	100	41%	7	57.1%	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
VCAN	1462	genome.wustl.edu	37	5	82815724	82815724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004385.4	+1	reviewed	p.K533N	0.006	309	0%	243	31.7%	0	-	benign(0.273)	deleterious(0.03)	neutral(0.394)	NULL
VCAN	1462	genome.wustl.edu	37	5	82816288	82816288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004385.4	+1	reviewed	p.F721L	1.000	185	0%	165	24.8%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
VCAN	1462	genome.wustl.edu	37	5	82841395	82841395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004385.4	+1	reviewed	p.G3102D	1.000	347	0%	215	27.4%	22	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
VCAN	1462	genome.wustl.edu	37	5	82876014	82876014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000421036	+1	known	p.C3366R	0.963	185	0%	162	29.6%	10	0%	-	-	-	NULL
HAPLN1	1404	genome.wustl.edu	37	5	82937400	82937400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001884.3	-1	validated	p.P327H	0.998	158	0%	97	24.7%	12	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
RASA1	5921	genome.wustl.edu	37	5	86649005	86649005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002890.1	+1	reviewed	p.E429*	1.000	115	0%	96	25%	0	-	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
MEF2C	4208	genome.wustl.edu	37	5	88018519	88018519	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002397.3	-1	validated	p.E442*	1.000	133	0%	147	30.6%	4	0%	-	-	-	NULL
POLR3G	10622	genome.wustl.edu	37	5	89807934	89807934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006467.2	+1	validated	p.N217T	1.000	146	0%	137	17.5%	0	-	unknown(0)	deleterious(0)	-	NULL
GPR98	84059	genome.wustl.edu	37	5	89923146	89923146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.R264I	1.000	187	0%	190	21.6%	0	-	possibly_damaging(0.872)	tolerated(0.09)	deleterious(0.635)	NULL
GPR98	84059	genome.wustl.edu	37	5	89940541	89940541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.R918I	1.000	384	0%	307	28.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89986685	89986685	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.R2260*	1.000	57	0%	64	29.7%	0	-	-	-	-	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90072290	90072290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.R4142W	0.052	55	0%	51	33.3%	0	-	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
GPR98	84059	genome.wustl.edu	37	5	90074406	90074406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.R4277*	0.229	102	0%	115	20.9%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90079798	90079798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.S4526Y	0.962	70	0%	80	22.5%	0	-	possibly_damaging(0.654)	tolerated(0.88)	neutral(0.230)	NULL
GPR98	84059	genome.wustl.edu	37	5	90107058	90107058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032119.3	+1	reviewed	p.F5327L	0.993	65	0%	52	34.6%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_Calx-beta
NR2F1	7025	genome.wustl.edu	37	5	92921161	92921161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005654.4	+1	provisional	p.K144N	1.000	21	0%	28	28.6%	19	42.1%	benign(0.061)	deleterious(0.02)	neutral(0.387)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_Str_ncl_receptor,superfamily_SSF57716
MCTP1	79772	genome.wustl.edu	37	5	94207064	94207064	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024717.4	-1	validated	p.R699*	1.000	77	0%	79	17.7%	3	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TTC37	9652	genome.wustl.edu	37	5	94805499	94805499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014639.2	-1	provisional	p.R1494H	0.988	317	0%	200	21%	20	30%	probably_damaging(0.965)	tolerated(0.16)	neutral(0.466)	NULL
GLRX	2745	genome.wustl.edu	37	5	95152323	95152323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001118890.1	-1	validated	p.R72Q	0.992	122	0%	141	22.7%	29	13.7%	possibly_damaging(0.455)	tolerated(0.08)	neutral(0.449)	HMMPfam_Glutaredoxin,superfamily_Thioredoxin-like
ELL2	22936	genome.wustl.edu	37	5	95226945	95226945	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508757	-1	known	p.A59V	1.000	277	0%	167	23.4%	0	-	-	-	-	HMMPfam_Occludin_ELL
PCSK1	5122	genome.wustl.edu	37	5	95764936	95764936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000439.4	-1	reviewed	p.R89I	1.000	174	0%	179	33%	0	-	benign(0.361)	deleterious(0.01)	deleterious(0.520)	superfamily_Prot_inh_propept
CAST	831	genome.wustl.edu	37	5	96076486	96076486	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000512620	+1	known	p.R240*	0.001	397	0%	237	17.7%	19	36.8%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_Calpain_inhib
ERAP2	64167	genome.wustl.edu	37	5	96222375	96222375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130140.1	+1	validated	p.L244R	0.245	151	0%	138	17.4%	0	-	benign(0.008)	tolerated(0.22)	neutral(0.042)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
LIX1	167410	genome.wustl.edu	37	5	96443064	96443064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153234.4	-1	validated	p.S129	0.121	274	0%	238	29.8%	0	-	-	-	-	NULL
CHD1	1105	genome.wustl.edu	37	5	98193950	98193950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001270.2	-1	reviewed	p.R1574I	1.000	371	0%	267	25.5%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
CHD1	1105	genome.wustl.edu	37	5	98199284	98199284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001270.2	-1	reviewed	p.E1419*	1.000	87	0%	67	11.9%	1	100%	-	-	-	NULL
SLCO4C1	353189	genome.wustl.edu	37	5	101575050	101575050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_180991.4	-1	validated	p.S640I	1.000	186	0%	117	33.3%	0	-	possibly_damaging(0.598)	tolerated(0.19)	neutral(0.257)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO6A1	133482	genome.wustl.edu	37	5	101834189	101834189	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173488.3	-1	validated	e1+2	0.996	64	0%	54	31.5%	0	-	-	-	-	-
SLCO6A1	133482	genome.wustl.edu	37	5	101834311	101834311	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173488.3	-1	validated	p.E80*	0.000	151	0%	154	19.5%	0	-	-	-	-	NULL
SLCO6A1	133482	genome.wustl.edu	37	5	101834394	101834394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173488.3	-1	validated	p.R52I	0.000	196	0%	183	37.7%	0	-	possibly_damaging(0.8)	deleterious(0.04)	deleterious(0.650)	NULL
PAM	5066	genome.wustl.edu	37	5	102309841	102309841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000919.3	+1	reviewed	p.S395F	1.000	146	0%	139	28.1%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC134505	134505	genome.wustl.edu	37	5	102368683	102368683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342545.1	+1	model	p.V167A	1.000	37	0%	30	23.3%	0	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
NUDT12	83594	genome.wustl.edu	37	5	102894639	102894639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031438.2	-1	validated	p.N246T	1.000	112	0%	104	26.9%	1	0%	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_NUDIX-like
FER	2241	genome.wustl.edu	37	5	108219116	108219116	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005246.2	+1	reviewed	p.E315*	1.000	362	0%	285	23.9%	0	-	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109183456	109183456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002372.2	+1	reviewed	p.R981*	1.000	104	0%	116	31%	3	0%	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
LOC100286926	100286926	genome.wustl.edu	37	5	110427980	110427980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342562.1	-1	model	p.F85L	0.137	71	0%	65	30.8%	0	-	-	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110446632	110446632	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139281.2	+1	reviewed	p.I585	0.029	183	0%	129	34.1%	2	50%	-	-	-	superfamily_WD40_like
APC	324	genome.wustl.edu	37	5	112103071	112103071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000038.4	+1	reviewed	p.E136*	1.000	242	0%	189	22.8%	0	-	-	-	-	superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112173572	112173572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000038.4	+1	reviewed	p.E761*	0.998	133	0%	145	31.7%	0	-	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112175921	112175921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000038.4	+1	reviewed	p.E1544*	1.000	333	0%	371	30.2%	1	0%	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112177799	112177799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000038.4	+1	reviewed	p.P2170T	1.000	251	0.4%	300	24%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112227934	112227934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000391338	+1	known	p.T200A	0.815	256	0%	270	23.7%	0	-	benign(0.123)	tolerated(0.75)	neutral(0.011)	NULL
DCP2	167227	genome.wustl.edu	37	5	112337142	112337142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152624.4	+1	validated	p.F225C	1.000	212	0%	186	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nudix
CCDC112	153733	genome.wustl.edu	37	5	114607180	114607180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040440.2	-1	validated	p.Q354H	0.999	314	0%	258	30.6%	4	50%	possibly_damaging(0.822)	tolerated(0.12)	deleterious(0.572)	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115782595	115782595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000515129	-1	known	p.E451*	1.000	104	0%	93	31.2%	0	-	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118470057	118470057	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005509.4	+1	validated	p.L783	0.787	331	0%	248	29.8%	0	-	-	-	-	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118485124	118485124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005509.4	+1	validated	p.R1201Q	1.000	394	0%	336	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118485540	118485540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005509.4	+1	validated	p.R1340W	1.000	200	0%	149	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNFAIP8	25816	genome.wustl.edu	37	5	118728739	118728739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014350.2	+1	validated	p.R87M	1.000	102	0%	116	31%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF758
HSD17B4	3295	genome.wustl.edu	37	5	118832237	118832237	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000414.2	+1	reviewed	e12-1	0.999	240	0%	169	32.5%	0	-	-	-	-	-
SNCAIP	9627	genome.wustl.edu	37	5	121786808	121786808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005460.2	+1	reviewed	p.E756K	0.994	112	0%	91	30.8%	19	26.3%	benign(0.408)	deleterious(0)	deleterious(0.577)	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121799256	121799256	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000261367	+1	known	p.E1013*	1.000	82	0%	118	11%	1	0%	-	-	-	NULL
MEGF10	84466	genome.wustl.edu	37	5	126791225	126791225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032446.2	+1	validated	p.S1053L	1.000	169	0%	189	23.3%	0	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
FBN2	2201	genome.wustl.edu	37	5	127637081	127637081	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001999.3	-1	reviewed	p.N2013	1.000	160	0%	114	21.1%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127681271	127681271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001999.3	-1	reviewed	p.R999C	1.000	179	0%	190	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127685655	127685655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001999.3	-1	reviewed	p.T952M	0.020	121	0%	73	30.1%	0	-	possibly_damaging(0.643)	tolerated(0.14)	deleterious(0.475)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127713525	127713525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001999.3	-1	reviewed	p.R590Q	1.000	261	0%	269	11.2%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127800598	127800598	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001999.3	-1	reviewed	p.P215	0.097	93	0%	98	30.6%	2	50%	-	-	-	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
CHSY3	337876	genome.wustl.edu	37	5	129244019	129244019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175856.4	+1	validated	p.R351H	0.993	55	0%	53	32.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CHGN
RAPGEF6	51735	genome.wustl.edu	37	5	130788825	130788825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016340.5	-1	validated	p.R1041I	1.000	118	0%	127	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
FNIP1	96459	genome.wustl.edu	37	5	131006311	131006311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133372.2	-1	validated	p.E985K	1.000	427	0%	387	20.7%	5	60%	possibly_damaging(0.759)	tolerated(0.2)	neutral(0.330)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131014836	131014836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133372.2	-1	validated	p.R412Q	1.000	153	0%	117	28.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ACSL6	23305	genome.wustl.edu	37	5	131298255	131298255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009185.1	-1	validated	p.Q610H	0.990	162	0%	183	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
ACSL6	23305	genome.wustl.edu	37	5	131298297	131298297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009185.1	-1	validated	p.E596D	1.000	160	0%	178	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
P4HA2	8974	genome.wustl.edu	37	5	131543487	131543487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142599.1	-1	reviewed	p.E332K	1.000	49	0%	33	42.4%	162	51.2%	probably_damaging(0.973)	tolerated(0.57)	neutral(0.421)	NULL
SLC22A5	6584	genome.wustl.edu	37	5	131719863	131719863	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003060.3	+1	reviewed	p.F174	0.997	165	0%	217	35.9%	3	66.6%	-	-	-	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter
IL5	3567	genome.wustl.edu	37	5	131879049	131879049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000879.2	-1	reviewed	p.R41Q	0.000	171	0.6%	163	28.8%	0	-	benign(0.031)	tolerated(0.09)	neutral(0.298)	HMMPfam_IL5,superfamily_4_helix_cytokine
RAD50	10111	genome.wustl.edu	37	5	131927602	131927602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005732.3	+1	reviewed	p.S557P	1.000	231	0%	218	26.6%	0	-	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD50	10111	genome.wustl.edu	37	5	131927603	131927603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005732.3	+1	reviewed	p.S557Y	1.000	234	0%	224	25.4%	0	-	benign(0.009)	deleterious(0.03)	neutral(0.365)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD50	10111	genome.wustl.edu	37	5	131953874	131953874	+	Nonsense_Mutation	SNP	C	C	T	rs121912628		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005732.3	+1	reviewed	p.R1093*	0.990	533	0%	434	34.1%	2	0%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD50	10111	genome.wustl.edu	37	5	131977997	131977997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005732.3	+1	reviewed	p.D1294N	0.995	118	0%	132	25%	5	0%	benign(0.183)	tolerated(0.5)	neutral(0.027)	HMMPfam_SMC_N
IL4	3565	genome.wustl.edu	37	5	132010163	132010163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000589.2	+1	reviewed	p.E50K	0.015	86	0%	90	23.3%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00190,HMMPfam_IL4,superfamily_4-helical cytokines,PatternScan_INTERLEUKIN_4_13
AFF4	27125	genome.wustl.edu	37	5	132222064	132222064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014423.3	-1	validated	p.L1013	0.981	53	0%	61	11.5%	1	0%	-	-	-	HMMPfam_AF-4
PPP2CA	5515	genome.wustl.edu	37	5	133537682	133537682	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002715.2	-1	reviewed	p.R115*	1.000	111	0%	113	26.5%	40	7.5%	-	-	-	HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,superfamily_Metallo-dependent phosphatases
CDKL3	51265	genome.wustl.edu	37	5	133644107	133644107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113575.1	-1	reviewed	p.K362N	0.998	107	0%	88	26.1%	0	-	possibly_damaging(0.697)	tolerated(0.1)	deleterious(0.536)	NULL
UBE2B	7320	genome.wustl.edu	37	5	133716430	133716430	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003337.2	+1	reviewed	p.E58*	1.000	44	0%	28	25%	4	0%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
CAMLG	819	genome.wustl.edu	37	5	134077130	134077130	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001745.2	+1	reviewed	p.E184*	1.000	121	0%	131	23.7%	12	0%	-	-	-	NULL
DDX46	9879	genome.wustl.edu	37	5	134130542	134130542	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014829.2	+1	reviewed	p.V543	0.979	336	0%	287	17.8%	13	7.6%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
TGFBI	7045	genome.wustl.edu	37	5	135398900	135398900	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000514554	+1	known	p.E362K	1.000	66	0%	41	24.4%	193	31%	-	-	-	NULL
SMAD5	4090	genome.wustl.edu	37	5	135508374	135508374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000507637	+1	known	p.R165Q	0.159	89	0%	110	31.8%	1	0%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	HMMPfam_MH2,HMMSmart_SM00524
SPOCK1	6695	genome.wustl.edu	37	5	136328224	136328224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004598.3	-1	reviewed	p.E219K	0.988	197	0%	111	20.7%	0	-	benign(0.271)	tolerated(0.17)	neutral(0.088)	HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473
KLHL3	26249	genome.wustl.edu	37	5	136963985	136963985	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017415.2	-1	validated	e13+1	1.000	195	0%	180	23.3%	0	-	-	-	-	-
KLHL3	26249	genome.wustl.edu	37	5	137034000	137034000	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017415.2	-1	validated	p.I113	0.516	313	0%	248	30.6%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PKD2L2	27039	genome.wustl.edu	37	5	137230127	137230127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014386.2	+1	validated	p.R118H	0.996	203	0%	192	33.3%	0	-	benign(0.016)	tolerated(0.47)	neutral(0.011)	HMMPfam_PKD_channel
PKD2L2	27039	genome.wustl.edu	37	5	137261580	137261580	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014386.2	+1	validated	p.L545	0.997	95	0%	68	17.6%	0	-	-	-	-	NULL
NME5	8382	genome.wustl.edu	37	5	137451381	137451381	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003551.2	-1	validated	p.E210*	1.000	127	0%	93	25.8%	2	50%	-	-	-	NULL
BRD8	10902	genome.wustl.edu	37	5	137495826	137495826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139199.1	-1	reviewed	p.E822K	1.000	190	0%	220	17.3%	26	46.1%	benign(0.158)	deleterious(0.02)	neutral(0.397)	superfamily_Bromodomain
KIF20A	10112	genome.wustl.edu	37	5	137515389	137515389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005733.2	+1	validated	p.S7Y	1.000	74	0%	75	29.3%	12	50%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
GFRA3	2676	genome.wustl.edu	37	5	137593504	137593504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001496.3	-1	reviewed	p.F203L	1.000	16	0%	29	41.4%	2	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_GDNF
CDC25C	995	genome.wustl.edu	37	5	137661570	137661570	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001790.3	-1	reviewed	p.P131	0.047	138	0%	237	27.4%	2	50%	-	-	-	HMMPfam_M-inducer_phosp
KDM3B	51780	genome.wustl.edu	37	5	137727375	137727375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016604.3	+1	validated	p.S685Y	0.984	111	0%	150	27.3%	1	0%	possibly_damaging(0.861)	deleterious(0.01)	deleterious(0.739)	NULL
LRRTM2	26045	genome.wustl.edu	37	5	138208726	138208726	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015564.2	-1	validated	p.Q508	1.000	318	0%	270	27.4%	0	-	-	-	-	NULL
LRRTM2	26045	genome.wustl.edu	37	5	138208934	138208934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015564.2	-1	validated	p.F439C	1.000	338	0%	293	21.5%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
LRRTM2	26045	genome.wustl.edu	37	5	138209587	138209587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015564.2	-1	validated	p.N221K	1.000	559	0%	529	26.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
UBE2D2	7322	genome.wustl.edu	37	5	138994462	138994462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003339.2	+1	reviewed	p.R72I	1.000	165	0%	204	25.5%	153	34.6%	possibly_damaging(0.617)	deleterious(0)	deleterious(0.659)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
UBE2D2	7322	genome.wustl.edu	37	5	139002988	139002988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003339.2	+1	reviewed	p.N114D	1.000	134	0%	186	18.8%	90	36.6%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
PSD2	84249	genome.wustl.edu	37	5	139216788	139216788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032289.2	+1	provisional	p.A544T	1.000	41	0%	44	31.8%	0	-	benign(0.217)	tolerated(0.08)	neutral(0.322)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLC4A9	83697	genome.wustl.edu	37	5	139741649	139741649	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031467.2	+1	validated	p.G203	0.923	24	0%	36	13.9%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139892978	139892978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020690.4	+1	reviewed	p.E1411K	1.000	100	0%	103	27.2%	6	16.6%	benign(0.224)	tolerated(0.33)	neutral(0.046)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139918528	139918528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020690.4	+1	reviewed	p.G2477C	1.000	229	0%	165	27.3%	39	48.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IK	3550	genome.wustl.edu	37	5	140034285	140034285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006083.3	+1	reviewed	p.N204H	1.000	58	0%	68	25%	6	66.6%	benign(0.006)	deleterious(0.02)	neutral(0.383)	HMMPfam_RED_N
IK	3550	genome.wustl.edu	37	5	140038338	140038338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006083.3	+1	reviewed	p.K309N	1.000	32	0%	36	33.3%	59	27.1%	possibly_damaging(0.679)	tolerated(0.28)	neutral(0.273)	NULL
HARS2	23438	genome.wustl.edu	37	5	140078096	140078096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012208.2	+1	reviewed	p.N494H	0.976	448	0%	461	14.1%	10	50%	benign(0.041)	deleterious(0.01)	neutral(0.408)	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
PCDHA1	56147	genome.wustl.edu	37	5	140166750	140166750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018900.2	+1	reviewed	p.K292T	0.012	152	0%	109	30.3%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208322	140208322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018909.2	+1	reviewed	p.D216Y	1.000	120	0%	135	26.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209607	140209607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018909.2	+1	reviewed	p.R644H	0.009	24	0%	41	31.7%	0	-	benign(0.186)	tolerated(0.1)	neutral(0.304)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221031	140221031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018911.2	+1	reviewed	p.G42V	1.000	48	0%	44	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221663	140221663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018911.2	+1	reviewed	p.E253K	1.000	85	0%	101	18.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221953	140221953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018911.2	+1	reviewed	p.E349D	0.832	161	0%	205	22.9%	0	-	benign(0.041)	tolerated(0.07)	neutral(0.322)	superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222284	140222284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018911.2	+1	reviewed	p.Y460H	0.530	32	0%	44	31.8%	0	-	benign(0.185)	deleterious(0)	neutral(0.462)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222364	140222364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018911.2	+1	reviewed	p.E486D	0.983	35	0%	47	31.9%	0	-	benign(0.336)	deleterious(0.03)	deleterious(0.470)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228351	140228351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031857.1	+1	reviewed	p.D91N	1.000	103	0%	125	25.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228687	140228687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031857.1	+1	reviewed	p.E203*	1.000	134	0%	115	14.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140236635	140236635	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018901.2	+1	reviewed	p.T334	0.003	79	0%	47	19.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140249007	140249007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018902.3	+1	reviewed	p.E107*	1.000	109	0%	76	27.6%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140249212	140249212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018902.3	+1	reviewed	p.N175T	0.995	126	0%	92	30.4%	0	-	benign(0.015)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140249586	140249586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018902.3	+1	reviewed	p.E300*	1.000	59	0%	33	18.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262910	140262910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018904.2	+1	reviewed	p.T353P	0.861	185	0%	118	29.7%	0	-	possibly_damaging(0.761)	deleterious(0)	deleterious(0.726)	superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308268	140308268	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018898.3	+1	reviewed	p.S597	1.000	160	0%	141	41.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140348138	140348138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018899.5	+1	reviewed	p.R596Q	1.000	101	0%	67	28.4%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140358579	140358579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018899.5	+1	reviewed	p.A871S	1.000	95	0%	96	31.2%	1	0%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140476585	140476585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018936.2	+1	reviewed	p.Q737H	0.118	98	0%	115	21.7%	1	0%	benign(0)	tolerated(1)	-	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140481556	140481556	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018937.2	+1	reviewed	p.V441	0.756	192	0%	171	32.2%	2	50%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140502263	140502263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018938.2	+1	reviewed	p.R228Q	0.000	121	0%	145	26.2%	0	-	benign(0.068)	tolerated(0.35)	neutral(0.025)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB4	56131	genome.wustl.edu	37	5	140503159	140503159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018938.2	+1	reviewed	p.E527K	0.930	80	0%	108	23.1%	1	0%	possibly_damaging(0.87)	tolerated(0.2)	neutral(0.387)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140515314	140515314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015669.2	+1	reviewed	p.E100*	0.299	200	0%	237	24.1%	0	-	-	-	-	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140517311	140517311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015669.2	+1	reviewed	p.F765L	0.072	204	0%	209	26.3%	0	-	benign(0.047)	deleterious(0.03)	neutral(0.367)	NULL
PCDHB6	56130	genome.wustl.edu	37	5	140530376	140530376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018939.2	+1	reviewed	p.L180F	0.000	267	0%	353	20.1%	0	-	possibly_damaging(0.822)	tolerated(0.06)	deleterious(0.633)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB7	56129	genome.wustl.edu	37	5	140553020	140553020	+	Missense_Mutation	SNP	C	C	T	rs113945814		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018940.2	+1	reviewed	p.R202W	0.993	68	0%	96	24%	2	100%	benign(0.056)	deleterious(0.02)	neutral(0.387)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140557693	140557693	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019120.2	+1	reviewed	p.A26	0.000	211	0%	221	8.6%	0	-	-	-	-	NULL
PCDHB10	56126	genome.wustl.edu	37	5	140573845	140573845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018930.3	+1	reviewed	p.E574K	0.988	31	0%	52	17.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140579401	140579401	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018931.2	+1	reviewed	p.F18L	0.416	106	0%	96	26%	0	-	possibly_damaging(0.625)	tolerated(0.64)	neutral(0.221)	NULL
PCDHB11	56125	genome.wustl.edu	37	5	140579519	140579519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018931.2	+1	reviewed	p.E58*	0.019	121	0%	129	32.6%	0	-	-	-	-	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140579943	140579943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018931.2	+1	reviewed	p.A199V	0.000	162	0%	120	25.8%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580305	140580305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018931.2	+1	reviewed	p.Q320K	0.930	167	0%	166	37.3%	0	-	benign(0.006)	tolerated(0.25)	neutral(0.037)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140588741	140588741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018932.3	+1	reviewed	p.E88*	0.665	134	0%	115	30.4%	0	-	-	-	-	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140603910	140603910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018934.2	+1	reviewed	p.S278Y	0.000	112	0%	108	33.3%	0	-	benign(0.371)	deleterious(0)	deleterious(0.562)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140605331	140605331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018934.2	+1	reviewed	p.E752K	0.999	119	0%	115	27.8%	1	0%	possibly_damaging(0.734)	tolerated(0.27)	neutral(0.302)	NULL
PCDHB14	56122	genome.wustl.edu	37	5	140605445	140605445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018934.2	+1	reviewed	p.R790*	0.001	104	0%	112	20.5%	1	100%	-	-	-	NULL
PCDHB18	54660	genome.wustl.edu	37	5	140616303	140616303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000274705	+1	known	p.S673L	0.001	52	0%	60	36.7%	0	-	-	-	-	NULL
PCDHB15	56121	genome.wustl.edu	37	5	140626387	140626387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018935.2	+1	reviewed	p.R414I	0.000	137	0%	128	10.2%	0	-	benign(0.005)	tolerated(0.36)	neutral(0.020)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626443	140626443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018935.2	+1	reviewed	p.T433S	0.014	154	0%	181	12.2%	2	0%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA1	56114	genome.wustl.edu	37	5	140711178	140711178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018912.2	+1	reviewed	p.F309	0.877	144	0%	116	29.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140718605	140718605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018915.2	+1	reviewed	p.L23M	0.001	51	0%	46	26.1%	0	-	possibly_damaging(0.828)	tolerated(0.09)	deleterious(0.611)	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140719174	140719174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018915.2	+1	reviewed	p.L212	0.005	119	0%	173	28.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140724856	140724856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018916.3	+1	reviewed	p.N419S	1.000	187	0%	204	30.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140731921	140731921	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018922.2	+1	reviewed	p.L698	0.995	122	0%	120	25.8%	0	-	-	-	-	NULL
PCDHGB1	56104	genome.wustl.edu	37	5	140731930	140731930	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018922.2	+1	reviewed	p.L701	0.000	114	0%	121	26.4%	0	-	-	-	-	NULL
PCDHGB1	56104	genome.wustl.edu	37	5	140732153	140732153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018922.2	+1	reviewed	p.L776M	1.000	52	0%	50	18%	0	-	benign(0.057)	tolerated(0.19)	neutral(0.053)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140736244	140736244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018917.2	+1	reviewed	p.E493K	0.937	230	0%	228	26.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA4	56111	genome.wustl.edu	37	5	140737156	140737156	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018917.2	+1	reviewed	p.L797V	0.868	84	0%	97	20.6%	0	-	-	-	-	NULL
PCDHGB2	56103	genome.wustl.edu	37	5	140742037	140742037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018923.2	+1	reviewed	p.D779Y	0.232	128	0%	130	20.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCDHGA5	56110	genome.wustl.edu	37	5	140744763	140744763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018918.2	+1	reviewed	p.S289L	0.000	64	0%	59	33.9%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140746185	140746185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018918.2	+1	reviewed	p.S763L	1.000	131	0%	100	30%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PCDHGB3	56102	genome.wustl.edu	37	5	140751506	140751506	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018924.2	+1	reviewed	p.F515	0.142	44	0%	48	37.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754508	140754508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018919.2	+1	reviewed	p.E286D	0.659	81	0%	66	13.6%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763001	140763001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018920.2	+1	reviewed	p.S179P	0.956	34	0%	28	14.3%	0	-	possibly_damaging(0.952)	tolerated(0.17)	neutral(0.455)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764854	140764854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018920.2	+1	reviewed	p.D796E	0.984	73	0%	74	24.3%	0	-	benign(0.016)	tolerated(0.34)	neutral(0.024)	NULL
PCDHGB5	56101	genome.wustl.edu	37	5	140778867	140778867	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018925.2	+1	reviewed	p.I391	0.000	79	0%	84	31%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140792882	140792882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018913.2	+1	reviewed	p.S47F	0.998	75	0%	53	32.1%	0	-	benign(0.085)	tolerated(0.1)	neutral(0.292)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140798405	140798405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018927.2	+1	reviewed	p.L327I	0.875	74	0%	61	31.1%	0	-	possibly_damaging(0.886)	deleterious(0.02)	deleterious(0.730)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801248	140801248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018914.2	+1	reviewed	p.R152*	0.144	53	0%	39	30.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802373	140802373	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018914.2	+1	reviewed	p.R527*	0.115	113	0%	97	21.6%	2	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140810726	140810726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003735.2	+1	reviewed	p.R134C	0.295	142	0%	170	29.4%	0	-	possibly_damaging(0.72)	tolerated(0.05)	deleterious(0.607)	superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140812048	140812048	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003735.2	+1	reviewed	p.G574	0.223	103	0%	131	31.3%	1	0%	-	-	-	superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140866889	140866889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018928.2	+1	reviewed	p.R717C	0.916	148	0%	110	23.6%	0	-	benign(0.069)	deleterious(0)	neutral(0.449)	NULL
ARAP3	64411	genome.wustl.edu	37	5	141044918	141044918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022481.5	-1	reviewed	p.P866T	1.000	256	0.4%	210	21.9%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	HMMSmart_PH,superfamily_SSF50729
PCDH1	5097	genome.wustl.edu	37	5	141248533	141248533	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032420.2	-1	reviewed	p.F168	0.954	225	0%	305	23.9%	1	0%	-	-	-	superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141329052	141329052	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016580.2	-1	reviewed	p.L1025	1.000	164	0%	157	26.8%	9	0%	-	-	-	NULL
RNF14	9604	genome.wustl.edu	37	5	141358266	141358266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004290.3	+1	reviewed	p.F235L	0.997	142	0%	181	29.8%	14	78.5%	benign(0.254)	deleterious(0)	deleterious(0.471)	HMMPfam_zf-C3HC4,superfamily_RING/U-box
ARHGAP26	23092	genome.wustl.edu	37	5	142393656	142393656	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015071.4	+1	reviewed	p.S373	0.898	137	0%	124	18.5%	7	0%	-	-	-	NULL
ARHGAP26	23092	genome.wustl.edu	37	5	142500552	142500552	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015071.4	+1	reviewed	e18-1	1.000	420	0%	407	28%	0	-	-	-	-	-
NR3C1	2908	genome.wustl.edu	37	5	142779335	142779335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024094.1	-1	reviewed	p.I357T	1.000	236	0%	225	26.2%	0	-	possibly_damaging(0.56)	deleterious(0.01)	deleterious(0.597)	HMMPfam_GCR
YIPF5	81555	genome.wustl.edu	37	5	143543734	143543734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024947.2	-1	validated	p.E124*	1.000	204	0%	149	28.9%	4	0%	-	-	-	HMMPfam_Yip1
KCTD16	57528	genome.wustl.edu	37	5	143586814	143586814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020768.3	+1	validated	p.E179D	0.830	171	0%	164	28.7%	0	-	benign(0.002)	tolerated(1)	-	NULL
SH3RF2	153769	genome.wustl.edu	37	5	145393506	145393506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152550.3	+1	validated	p.S314Y	1.000	595	0%	642	24.3%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RBM27	54439	genome.wustl.edu	37	5	145610442	145610442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018989.1	+1	validated	p.R271Q	1.000	419	0%	392	30.6%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
STK32A	202374	genome.wustl.edu	37	5	146658898	146658898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001112724.1	+1	validated	p.R66I	1.000	56	0%	40	22.5%	0	-	possibly_damaging(0.88)	tolerated(0.19)	neutral(0.393)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DPYSL3	1809	genome.wustl.edu	37	5	146798061	146798061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001387.2	-1	validated	p.D88Y	1.000	308	0%	401	29.7%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	147019275	147019275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014790.3	-1	provisional	p.E484*	1.000	420	0%	403	36%	0	-	-	-	-	NULL
SPINK5	11005	genome.wustl.edu	37	5	147504332	147504332	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127698.1	+1	reviewed	p.R891*	0.998	67	0%	40	37.5%	1	100%	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK14	408187	genome.wustl.edu	37	5	147553890	147553890	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001325.1	+1	provisional	p.F69V	0.001	317	0%	339	11.8%	0	-	benign(0.062)	deleterious(0.03)	neutral(0.368)	HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL,superfamily_SSF100895
SPINK6	404203	genome.wustl.edu	37	5	147585602	147585602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_205841.2	+1	validated	p.V21A	1.000	252	0%	241	29%	0	-	benign(0.001)	tolerated(0.92)	-	NULL
SPINK7	84651	genome.wustl.edu	37	5	147693683	147693683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032566.2	+1	validated	p.K36N	1.000	272	0%	324	28.7%	0	-	benign(0.075)	tolerated(0.27)	neutral(0.038)	HMMSmart_KAZAL,superfamily_SSF100895
HTR4	3360	genome.wustl.edu	37	5	147929798	147929798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040173.2	-1	reviewed	p.E18D	1.000	357	0%	258	27.1%	0	-	benign(0.243)	tolerated(0.24)	neutral(0.062)	superfamily_SSF81321
SH3TC2	79628	genome.wustl.edu	37	5	148389834	148389834	+	Missense_Mutation	SNP	C	C	T	rs80338935		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024577.3	-1	reviewed	p.R1109Q	0.981	134	0%	95	25.3%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_TPR-like
ABLIM3	22885	genome.wustl.edu	37	5	148619330	148619330	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014945.2	+1	validated	p.Y361	0.558	80	0%	92	16.3%	0	-	-	-	-	NULL
ABLIM3	22885	genome.wustl.edu	37	5	148619425	148619425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014945.2	+1	validated	p.R393H	1.000	78	0%	80	30%	0	-	possibly_damaging(0.758)	deleterious(0.03)	deleterious(0.645)	NULL
AFAP1L1	134265	genome.wustl.edu	37	5	148680716	148680716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152406.2	+1	validated	p.R84W	0.969	63	0%	91	39.6%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
PPARGC1B	133522	genome.wustl.edu	37	5	149212258	149212258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133263.3	+1	reviewed	p.S208A	0.001	132	0%	115	28.7%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	NULL
TIGD6	81789	genome.wustl.edu	37	5	149374866	149374866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030953.2	-1	validated	p.I349T	0.966	96	0%	96	22.9%	10	60%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_DDE
DCTN4	51164	genome.wustl.edu	37	5	150110697	150110697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135643.1	-1	validated	p.Q218H	1.000	245	0%	239	23.4%	4	25%	possibly_damaging(0.865)	tolerated(0.07)	deleterious(0.654)	HMMPfam_Dynactin_p62
ZNF300	91975	genome.wustl.edu	37	5	150275011	150275011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052860.2	-1	reviewed	p.R597I	0.997	241	0%	252	31.3%	2	100%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC36A3	285641	genome.wustl.edu	37	5	150660616	150660616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145017.1	-1	validated	p.F409C	0.013	133	0%	162	28.4%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Aa_trans
SLC36A3	285641	genome.wustl.edu	37	5	150663609	150663609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145017.1	-1	validated	p.C365R	1.000	225	0%	238	26.1%	0	-	possibly_damaging(0.469)	tolerated(0.52)	neutral(0.163)	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150923682	150923682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001447.2	-1	reviewed	p.E2336*	0.800	161	0%	154	22.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150923856	150923856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001447.2	-1	reviewed	p.T2278A	0.912	191	0%	176	33%	0	-	benign(0.059)	tolerated(0.44)	neutral(0.017)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150943168	150943168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001447.2	-1	reviewed	p.E1098*	1.000	75	0%	73	37%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150948121	150948121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001447.2	-1	reviewed	p.K124N	0.969	182	0%	170	34.7%	0	-	benign(0.053)	tolerated(0.36)	neutral(0.024)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NMUR2	56923	genome.wustl.edu	37	5	151771969	151771969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020167.4	-1	reviewed	p.S344Y	1.000	150	0%	199	16.6%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_Family A G protein-coupled receptor-like
FAM114A2	10827	genome.wustl.edu	37	5	153406870	153406870	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018691.2	-1	validated	p.E219*	1.000	172	0%	83	21.7%	2	0%	-	-	-	HMMPfam_DUF719
LARP1	23367	genome.wustl.edu	37	5	154174736	154174736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015315.3	+1	validated	p.E335*	1.000	123	0%	103	23.3%	4	0%	-	-	-	HMMPfam_La,HMMSmart_LA,superfamily_SSF46785
LARP1	23367	genome.wustl.edu	37	5	154179309	154179309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015315.3	+1	validated	p.Q435H	1.000	188	0%	197	29.9%	3	33.3%	possibly_damaging(0.932)	tolerated(0.08)	deleterious(0.678)	NULL
TIMD4	91937	genome.wustl.edu	37	5	156381483	156381483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138379.2	-1	validated	p.E115*	1.000	65	0%	98	27.6%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set
HAVCR2	84868	genome.wustl.edu	37	5	156531728	156531728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032782.3	-1	validated	p.D143Y	0.000	42	0%	41	29.3%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
FAM71B	153745	genome.wustl.edu	37	5	156589791	156589791	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130899.2	-1	validated	p.S495	0.802	162	0%	168	25.6%	0	-	-	-	-	NULL
FAM71B	153745	genome.wustl.edu	37	5	156592594	156592594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130899.2	-1	validated	p.E196K	0.001	369	0%	392	29.3%	0	-	possibly_damaging(0.81)	deleterious(0.02)	deleterious(0.688)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156752581	156752581	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037332.2	+1	validated	p.I639	0.910	58	0%	70	24.3%	1	0%	-	-	-	HMMPfam_FragX_IP
LSM11	134353	genome.wustl.edu	37	5	157181076	157181076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173491.2	+1	provisional	p.S218Y	1.000	92	0%	92	18.5%	3	33.3%	possibly_damaging(0.7)	tolerated(0.08)	deleterious(0.551)	HMMPfam_LSM,superfamily_Sm_like_riboprot
CLINT1	9685	genome.wustl.edu	37	5	157240119	157240119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014666.2	-1	validated	p.D157Y	1.000	286	0%	261	24.1%	16	18.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CLINT1	9685	genome.wustl.edu	37	5	157243763	157243763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014666.2	-1	validated	p.K74N	0.998	313	0%	201	22.9%	4	50%	possibly_damaging(0.753)	deleterious(0.03)	deleterious(0.641)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
UBLCP1	134510	genome.wustl.edu	37	5	158696002	158696002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145049.3	+1	validated	p.D27N	1.000	107	0%	119	10.1%	2	0%	benign(0.209)	tolerated(0.43)	neutral(0.034)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
IL12B	3593	genome.wustl.edu	37	5	158753767	158753767	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002187.2	-1	reviewed	p.I8	0.612	133	0%	138	21.7%	0	-	-	-	-	NULL
ENSG00000223908	0	genome.wustl.edu	37	5	159450880	159450880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000411779	-1	known	p.R39I	0.999	305	0%	280	29.6%	0	-	-	-	-	NULL
ATP10B	23120	genome.wustl.edu	37	5	159996531	159996531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025153.2	-1	validated	p.L1304I	1.000	258	0%	200	27.5%	0	-	benign(0.032)	tolerated(0.24)	neutral(0.039)	NULL
GABRA6	2559	genome.wustl.edu	37	5	161128544	161128544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000811.2	+1	reviewed	p.S376Y	1.000	304	0%	282	31.9%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRG2	2566	genome.wustl.edu	37	5	161531031	161531031	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198903.2	+1	reviewed	p.S296	0.956	214	0%	133	20.3%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
MAT2B	27430	genome.wustl.edu	37	5	162939191	162939191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013283.3	+1	reviewed	p.H83N	1.000	145	0%	93	28%	25	28%	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
MAT2B	27430	genome.wustl.edu	37	5	162945313	162945313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013283.3	+1	reviewed	p.E317*	1.000	125	0%	90	35.6%	34	50%	-	-	-	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
CCDC99	54908	genome.wustl.edu	37	5	169020366	169020366	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017785.4	+1	validated	p.K115	0.943	86	0%	102	22.5%	1	0%	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169108817	169108817	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004946.2	+1	validated	p.V180	0.998	187	0%	148	31.1%	0	-	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169125454	169125454	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004946.2	+1	validated	e11+1	1.000	160	0%	108	32.4%	0	-	-	-	-	-
FOXI1	2299	genome.wustl.edu	37	5	169535414	169535414	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012188.4	+1	reviewed	p.T312	0.889	66	0%	94	26.6%	0	-	-	-	-	NULL
LCP2	3937	genome.wustl.edu	37	5	169685107	169685107	+	Missense_Mutation	SNP	C	C	A	rs186940101	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005565.3	-1	reviewed	p.R345I	0.981	437	0%	409	30.6%	53	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
LCP2	3937	genome.wustl.edu	37	5	169702853	169702853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005565.3	-1	reviewed	p.K67T	1.000	13	0%	10	40%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
LCP2	3937	genome.wustl.edu	37	5	169720344	169720344	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005565.3	-1	reviewed	p.K37	0.975	29	0%	37	40.5%	3	0%	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
NPM1	4869	genome.wustl.edu	37	5	170818747	170818747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002520.6	+1	reviewed	p.V99A	1.000	112	0%	146	28.8%	412	38.8%	possibly_damaging(0.555)	deleterious(0.03)	deleterious(0.554)	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain
STK10	6793	genome.wustl.edu	37	5	171509486	171509486	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005990.3	-1	reviewed	p.T611	0.000	89	0%	78	30.8%	4	0%	-	-	-	NULL
ERGIC1	57222	genome.wustl.edu	37	5	172324069	172324069	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031711.2	+1	reviewed	p.T49	0.794	66	0%	68	25%	158	29.1%	-	-	-	NULL
CPEB4	80315	genome.wustl.edu	37	5	173317010	173317010	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030627.2	+1	validated	p.E92*	1.000	252	0%	280	30%	0	-	-	-	-	NULL
C5orf25	375484	genome.wustl.edu	37	5	175722168	175722168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198567.4	+1	validated	p.E89*	1.000	97	0%	130	19.2%	0	-	-	-	-	NULL
C5orf25	375484	genome.wustl.edu	37	5	175763724	175763724	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198567.4	+1	validated	p.E291*	0.999	138	0%	177	29.4%	1	0%	-	-	-	NULL
CDHR2	54825	genome.wustl.edu	37	5	176011604	176011604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017675.4	+1	reviewed	p.F774L	0.111	41	0%	91	28.6%	0	-	probably_damaging(0.961)	tolerated(0.12)	deleterious(0.665)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
GPRIN1	114787	genome.wustl.edu	37	5	176025625	176025625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052899.2	-1	validated	p.S404Y	0.013	79	0%	67	17.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GPRIN1	114787	genome.wustl.edu	37	5	176025980	176025980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052899.2	-1	validated	p.S286P	0.000	151	0%	117	24.8%	2	0%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
EIF4E1B	253314	genome.wustl.edu	37	5	176072448	176072448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099408.1	+1	validated	p.R182H	1.000	19	0%	34	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IF4E,superfamily_TIF_eIF_4E
HK3	3101	genome.wustl.edu	37	5	176318486	176318486	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002115.2	-1	reviewed	p.L54	0.882	43	0%	43	20.9%	0	-	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
NSD1	64324	genome.wustl.edu	37	5	176563067	176563067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424831	+1	known	p.I321M	0.000	65	0%	78	24.4%	0	-	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176709473	176709473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022455.4	+1	reviewed	p.F1967C	1.000	418	0%	453	30.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
B4GALT7	11285	genome.wustl.edu	37	5	177031445	177031445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007255.2	+1	reviewed	p.E106K	0.998	44	0%	75	18.7%	30	33.3%	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
HNRNPAB	3182	genome.wustl.edu	37	5	177636358	177636358	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031266.2	+1	reviewed	p.E233*	1.000	104	0%	86	22.1%	256	4.2%	-	-	-	superfamily_SSF54928
ZNF354B	117608	genome.wustl.edu	37	5	178310114	178310114	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058230.2	+1	validated	p.K221Q	0.998	342	0%	319	30.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178310292	178310292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058230.2	+1	validated	p.S280N	0.252	263	0%	246	19.9%	0	-	benign(0.087)	tolerated(0.17)	neutral(0.066)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178310506	178310506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058230.2	+1	validated	p.K351N	1.000	222	0%	222	28.4%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178310658	178310658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058230.2	+1	validated	p.R402I	1.000	222	0%	250	26%	1	100%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178311010	178311010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058230.2	+1	validated	p.E519D	1.000	205	0%	212	23.1%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_SSF57667
ZFP2	80108	genome.wustl.edu	37	5	178359206	178359206	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030613.2	+1	provisional	p.Y298D	0.968	166	0%	186	27.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP2	80108	genome.wustl.edu	37	5	178359519	178359519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030613.2	+1	provisional	p.R402I	1.000	127	0%	152	25.7%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178459956	178459956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136116.1	+1	provisional	p.R336I	0.894	18	0%	23	34.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAML1	9794	genome.wustl.edu	37	5	179192804	179192804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014757.4	+1	reviewed	p.E265*	1.000	266	0%	305	23%	1	0%	-	-	-	NULL
FLT4	2324	genome.wustl.edu	37	5	180041138	180041138	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182925.4	-1	reviewed	p.F1087	0.987	70	0%	84	33.3%	3	33.3%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MGAT1	4245	genome.wustl.edu	37	5	180219000	180219000	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114617.1	-1	reviewed	p.F324	1.000	66	0%	42	14.3%	72	9.7%	-	-	-	HMMPfam_GNT-I,superfamily_SSF53448
BTNL9	153579	genome.wustl.edu	37	5	180482997	180482997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152547.4	+1	validated	p.R313W	0.999	57	0%	104	15.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRF4	3662	genome.wustl.edu	37	6	394860	394860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002460.2	+1	validated	p.D86N	1.000	162	0%	156	31.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
EXOC2	55770	genome.wustl.edu	37	6	599086	599086	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018303.4	-1	reviewed	p.I294M	0.996	450	0%	408	21.6%	1	0%	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	NULL
C6orf195	154386	genome.wustl.edu	37	6	2623682	2623682	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152554.2	-1	validated	p.E125D	0.000	68	0%	68	26.5%	0	-	unknown(0)	-	-	NULL
SERPINB1	1992	genome.wustl.edu	37	6	2838228	2838228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030666.2	-1	provisional	p.F104L	1.000	246	0%	235	35.7%	16	43.7%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
BPHL	670	genome.wustl.edu	37	6	3152778	3152778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004332.2	+1	reviewed	p.F282S	1.000	78	0%	46	26.1%	63	50.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
F13A1	2162	genome.wustl.edu	37	6	6251145	6251145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000129.3	-1	reviewed	p.D197N	1.000	361	0%	252	30.2%	1	0%	benign(0.012)	deleterious(0.02)	neutral(0.384)	superfamily_SSF54001
F13A1	2162	genome.wustl.edu	37	6	6318881	6318881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000129.3	-1	reviewed	p.R6K	0.000	187	0%	135	23.7%	0	-	benign(0.008)	tolerated(0.24)	neutral(0.037)	superfamily_Ig_E-set
CAGE1	285782	genome.wustl.edu	37	6	7373437	7373437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_205864.2	-1	validated	p.E403K	0.000	53	0%	51	27.5%	0	-	possibly_damaging(0.478)	tolerated(0.32)	neutral(0.182)	NULL
DSP	1832	genome.wustl.edu	37	6	7583835	7583835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004415.2	+1	reviewed	p.N2114H	1.000	231	0%	230	27%	3	33.3%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMSmart_SM00250,superfamily_Plakin repeat
SNRNP48	154007	genome.wustl.edu	37	6	7594381	7594381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152551.3	+1	validated	p.S107L	0.867	37	0%	27	14.8%	0	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
SNRNP48	154007	genome.wustl.edu	37	6	7595275	7595275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152551.3	+1	validated	p.F116C	0.993	302	0%	201	27.9%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
SNRNP48	154007	genome.wustl.edu	37	6	7606410	7606410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152551.3	+1	validated	p.S318L	0.211	216	0%	156	32.1%	5	0%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
PAK1IP1	55003	genome.wustl.edu	37	6	10704800	10704800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017906.2	+1	validated	p.K186T	0.994	78	0%	77	27.3%	3	33.3%	benign(0.045)	tolerated(0.36)	neutral(0.022)	superfamily_WD40_like
HIVEP1	3096	genome.wustl.edu	37	6	12015869	12015869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.R3Q	1.000	101	0%	94	34%	0	-	possibly_damaging(0.627)	deleterious(0)	deleterious(0.663)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12120153	12120153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.S42L	0.894	525	0%	610	23.4%	0	-	possibly_damaging(0.718)	tolerated(0.26)	neutral(0.294)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12121151	12121151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.N375H	1.000	370	0%	374	22.5%	1	100%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12125382	12125382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.S1785L	0.001	253	0%	201	29.4%	0	-	benign(0.117)	tolerated(0.16)	neutral(0.069)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12125410	12125410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.K1794N	1.000	288	0%	244	24.2%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12163712	12163712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.S2392L	0.279	194	0%	150	25.3%	14	42.8%	possibly_damaging(0.647)	tolerated(0.09)	deleterious(0.523)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12164505	12164505	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002114.2	+1	validated	p.Q2656	0.000	82	0%	62	19.4%	23	34.7%	-	-	-	NULL
RANBP9	10048	genome.wustl.edu	37	6	13657357	13657357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005493.2	-1	reviewed	p.K296N	1.000	133	0%	113	31%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
RNF182	221687	genome.wustl.edu	37	6	13977579	13977579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152737.3	+1	validated	p.E77*	0.735	377	0%	268	29.9%	0	-	-	-	-	NULL
DTNBP1	84062	genome.wustl.edu	37	6	15627634	15627634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032122.3	-1	reviewed	p.E99K	1.000	101	0%	76	26.3%	5	20%	benign(0.103)	tolerated(0.58)	neutral(0.013)	NULL
GMPR	2766	genome.wustl.edu	37	6	16247101	16247101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006877.3	+1	reviewed	p.R39Q	1.000	82	0%	152	30.9%	12	50%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_IMPDH,superfamily_SSF51412
NUP153	9972	genome.wustl.edu	37	6	17648119	17648119	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005124.2	-1	reviewed	p.P517	0.110	166	0%	158	22.2%	0	-	-	-	-	HMMPfam_Nup153
NUP153	9972	genome.wustl.edu	37	6	17665549	17665549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005124.2	-1	reviewed	p.R379Q	1.000	140	0%	133	28.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup153
KIF13A	63971	genome.wustl.edu	37	6	17800213	17800213	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000358380	-1	known	p.S256*	1.000	359	0%	336	24.1%	3	66.6%	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17817433	17817433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022113.4	-1	validated	p.E606D	1.000	70	0%	92	23.9%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
TPMT	7172	genome.wustl.edu	37	6	18143837	18143837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000367.2	-1	reviewed	p.K119T	1.000	120	0%	137	24.1%	5	60%	possibly_damaging(0.666)	deleterious(0.01)	deleterious(0.641)	HMMPfam_TPMT,superfamily_SSF53335
DEK	7913	genome.wustl.edu	37	6	18256632	18256632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003472.3	-1	reviewed	p.G138*	1.000	93	0%	109	18.3%	7	0%	-	-	-	NULL
CDKAL1	54901	genome.wustl.edu	37	6	20781474	20781474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017774.3	+1	reviewed	p.E206*	1.000	219	0%	169	24.3%	3	0%	-	-	-	HMMSmart_SM00729,superfamily_Radical SAM enzymes
CDKAL1	54901	genome.wustl.edu	37	6	20955791	20955791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017774.3	+1	reviewed	p.P295L	1.000	170	0%	212	24.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
KIAA0319	9856	genome.wustl.edu	37	6	24566874	24566874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014809.3	-1	reviewed	p.R748I	1.000	198	0%	170	17.1%	1	0%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00060
KIAA0319	9856	genome.wustl.edu	37	6	24596683	24596683	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014809.3	-1	reviewed	p.F73	0.998	56	0%	72	30.6%	0	-	-	-	-	HMMSmart_SM00765
LRRC16A	55604	genome.wustl.edu	37	6	25472656	25472656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017640.5	+1	validated	p.D261Y	1.000	29	0%	26	69.2%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF52047
LRRC16A	55604	genome.wustl.edu	37	6	25619776	25619776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017640.5	+1	validated	p.G1316R	0.985	177	0%	148	20.3%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCGN	10590	genome.wustl.edu	37	6	25665251	25665251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006998.3	+1	reviewed	p.E109D	1.000	102	0%	69	29%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
SCGN	10590	genome.wustl.edu	37	6	25689399	25689399	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006998.3	+1	reviewed	e8-1	1.000	75	0%	51	19.6%	0	-	-	-	-	-
SLC17A4	10050	genome.wustl.edu	37	6	25769212	25769212	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005495.2	+1	validated	e2-1	0.216	135	0%	99	19.2%	0	-	-	-	-	-
SLC17A3	10786	genome.wustl.edu	37	6	25862047	25862047	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098486.1	-1	validated	p.R172*	0.276	121	0%	94	21.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HIST1H1A	3024	genome.wustl.edu	37	6	26017380	26017380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005325.3	-1	reviewed	p.A194V	0.862	180	0%	186	18.3%	0	-	unknown(0)	tolerated(0.44)	-	NULL
HIST1H2BC	8347	genome.wustl.edu	37	6	26123939	26123939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003526.2	-1	reviewed	p.S65Y	1.000	312	0%	248	23.4%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2AC	8334	genome.wustl.edu	37	6	26124646	26124646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003512.3	+1	reviewed	p.E62D	1.000	75	0%	42	9.5%	38	31.5%	possibly_damaging(0.477)	deleterious(0)	deleterious(0.602)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
HIST1H4D	8360	genome.wustl.edu	37	6	26189065	26189065	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003539.3	-1	reviewed	p.K80	1.000	91	0%	121	31.4%	0	-	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
BTN3A2	11118	genome.wustl.edu	37	6	26370573	26370573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007047.3	+1	reviewed	p.E153K	0.000	124	0%	121	26.4%	27	18.5%	benign(0.066)	tolerated(0.57)	neutral(0.010)	HMMPfam_V-set,superfamily_SSF48726
BTN1A1	696	genome.wustl.edu	37	6	26508840	26508840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001732.2	+1	validated	p.R340I	1.000	291	0%	347	28.5%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_SM00589
BTN1A1	696	genome.wustl.edu	37	6	26509189	26509189	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001732.2	+1	validated	p.L456	1.000	220	0%	206	28.2%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
ZNF322	79692	genome.wustl.edu	37	6	26637897	26637897	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024639.3	-1	validated	p.C295	1.000	503	0.2%	444	18.9%	0	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
FKSG83	387316	genome.wustl.edu	37	6	27293585	27293585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032030.2	+1	validated	p.R175I	0.000	84	0%	72	34.7%	0	-	-	-	-	NULL
ZNF184	7738	genome.wustl.edu	37	6	27420179	27420179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007149.2	-1	validated	p.E387*	1.000	117	0%	183	18%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
OR2B2	81697	genome.wustl.edu	37	6	27879096	27879096	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033057.2	-1	validated	p.F334	0.001	202	0%	210	32.9%	0	-	-	-	-	NULL
ZNF192	7745	genome.wustl.edu	37	6	28116539	28116539	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006298.2	+1	validated	p.N118	0.090	286	0%	243	25.5%	0	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
ZNF323	64288	genome.wustl.edu	37	6	28294523	28294523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135215.1	-1	validated	p.S214Y	0.102	186	0%	142	21.1%	1	0%	possibly_damaging(0.858)	tolerated(0.12)	deleterious(0.592)	superfamily_SSF57667
GPX6	257202	genome.wustl.edu	37	6	28473506	28473506	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182701.1	-1	reviewed	p.E145*	0.994	233	0%	150	24.7%	0	-	-	-	-	HMMPfam_GSHPx,superfamily_Thioredoxin-like
SCAND3	114821	genome.wustl.edu	37	6	28543856	28543856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052923.1	-1	provisional	p.S209I	0.617	107	0%	80	27.5%	0	-	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
ZNF311	282890	genome.wustl.edu	37	6	28967340	28967340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010877.2	-1	provisional	p.W78C	1.000	173	0%	195	13.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
OR2B3	442184	genome.wustl.edu	37	6	29054407	29054407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005226.2	-1	validated	p.L207I	0.000	143	0%	108	34.3%	0	-	possibly_damaging(0.888)	tolerated(0.09)	deleterious(0.644)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2J1	442185	genome.wustl.edu	37	6	29069550	29069550	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000377171	+1	known	p.L277	0.013	287	0%	276	25%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5V1	81696	genome.wustl.edu	37	6	29323709	29323709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030876.5	-1	validated	p.K88N	0.000	420	0%	471	29.1%	0	-	benign(0.069)	tolerated(0.14)	neutral(0.254)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAS1L	116511	genome.wustl.edu	37	6	29455613	29455613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052967.1	-1	provisional	p.I23L	0.013	71	0%	101	20.8%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GABBR1	2550	genome.wustl.edu	37	6	29591191	29591191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001470.2	-1	reviewed	p.R285Q	1.000	22	0%	44	36.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ZFP57	346171	genome.wustl.edu	37	6	29641493	29641493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001109809.2	-1	reviewed	p.R112I	0.007	162	0%	166	13.3%	0	-	possibly_damaging(0.928)	tolerated(0.49)	neutral(0.386)	NULL
TRIM10	10107	genome.wustl.edu	37	6	30122175	30122175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006778.3	-1	validated	p.Q339H	1.000	72	0%	75	25.3%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMSmart_SM00589
TRIM15	89870	genome.wustl.edu	37	6	30131750	30131750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033229.2	+1	reviewed	p.D97Y	0.645	52	0%	60	20%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain
TRIM15	89870	genome.wustl.edu	37	6	30136086	30136086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033229.2	+1	reviewed	p.E163K	0.024	46	0%	58	27.6%	1	0%	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	NULL
GNL1	2794	genome.wustl.edu	37	6	30514580	30514580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005275.3	-1	validated	p.K492T	1.000	188	0%	236	23.3%	92	34.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MDC1	9656	genome.wustl.edu	37	6	30676050	30676050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014641.2	-1	reviewed	p.D769G	0.000	283	0%	339	23.9%	0	-	benign(0.075)	-	-	NULL
MDC1	9656	genome.wustl.edu	37	6	30681583	30681583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014641.2	-1	reviewed	p.V172I	0.973	230	0%	238	19.3%	0	-	unknown(0)	tolerated(0.53)	-	NULL
FLOT1	10211	genome.wustl.edu	37	6	30710008	30710008	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418160	-1	known	p.P35	0.006	25	0%	36	22.2%	3	0%	-	-	-	NULL
SAPCD1	401251	genome.wustl.edu	37	6	31731840	31731840	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039651.1	+1	provisional	e3-1	0.278	43	0%	63	30.2%	0	-	-	-	-	-
VWA7	80737	genome.wustl.edu	37	6	31741092	31741092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025258.2	-1	validated	p.K282Q	0.000	4	0.000	9	0.444	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
HSPA1L	3305	genome.wustl.edu	37	6	31778007	31778007	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005527.3	-1	reviewed	p.S581	0.002	191	0%	247	31.2%	0	-	-	-	-	HMMPfam_HSP70,superfamily_SSF100934
HSPA1L	3305	genome.wustl.edu	37	6	31779716	31779716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005527.3	-1	reviewed	p.D12N	1.000	65	0%	88	14.8%	2	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_HSP70,PatternScan_HSP70_1,superfamily_SSF53067
SLC44A4	80736	genome.wustl.edu	37	6	31839095	31839095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025257.2	-1	reviewed	p.L233I	1.000	106	0%	138	18.8%	23	26%	benign(0.014)	tolerated(0.19)	neutral(0.050)	NULL
C2	717	genome.wustl.edu	37	6	31902182	31902182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418949	+1	known	p.E319*	0.319	85	0%	62	32.3%	1	0%	-	-	-	NULL
STK19	8859	genome.wustl.edu	37	6	31939805	31939805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032454.1	+1	reviewed	p.A11E	0.847	41	0%	40	25%	6	33.3%	unknown(0)	deleterious(0)	-	NULL
TNXB	7148	genome.wustl.edu	37	6	32015689	32015689	+	Silent	SNP	G	G	A	rs146798373	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019105.6	-1	reviewed	p.F3380	0.259	29	0%	20	30%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32036898	32036898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019105.6	-1	reviewed	p.T1868M	0.000	39	0%	47	34%	0	-	probably_damaging(0.967)	tolerated(0.18)	neutral(0.465)	superfamily_Fibronectin type III
EGFL8	80864	genome.wustl.edu	37	6	32135385	32135385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030652.2	+1	validated	p.E263K	1.000	58	0%	57	26.3%	2	0%	benign(0.418)	deleterious(0.02)	deleterious(0.518)	NULL
NOTCH4	4855	genome.wustl.edu	37	6	32181557	32181557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004557.3	-1	reviewed	p.S743Y	1.000	83	0%	113	35.4%	2	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
BTNL2	56244	genome.wustl.edu	37	6	32364113	32364113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019602.1	-1	provisional	p.E261*	0.977	65	0%	81	24.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HLA-DMA	3108	genome.wustl.edu	37	6	32917421	32917421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006120.3	-1	reviewed	p.E207K	0.970	170	0%	199	26.6%	1083	31.4%	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
HSD17B8	7923	genome.wustl.edu	37	6	33173616	33173616	+	Missense_Mutation	SNP	G	G	A	rs144565618	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014234.3	+1	reviewed	p.R193H	1.000	151	0%	161	18.6%	31	3.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-bd
KIFC1	3833	genome.wustl.edu	37	6	33372754	33372754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002263.3	+1	validated	p.E294D	0.998	59	0%	68	29.4%	26	50%	possibly_damaging(0.849)	tolerated(0.11)	deleterious(0.598)	superfamily_SSF52540
ITPR3	3710	genome.wustl.edu	37	6	33631645	33631645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002224.2	+1	validated	p.S379Y	1.000	27	0%	38	21.1%	3	66.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR
GRM4	2914	genome.wustl.edu	37	6	34008054	34008054	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000841.1	-1	reviewed	p.G469	0.995	171	0%	163	20.2%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ANKS1A	23294	genome.wustl.edu	37	6	34949577	34949577	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015245.2	+1	validated	p.F182	0.043	84	0%	76	27.6%	2	50%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TULP1	7287	genome.wustl.edu	37	6	35478732	35478732	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003322.3	-1	reviewed	p.K135	0.997	116	0%	137	35%	0	-	-	-	-	NULL
FKBP5	2289	genome.wustl.edu	37	6	35554774	35554774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145777.1	-1	reviewed	p.K262N	0.000	172	0%	152	21.7%	0	-	probably_damaging(0.976)	-	-	NULL
LHFPL5	222662	genome.wustl.edu	37	6	35773810	35773810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182548.3	+1	reviewed	p.C121*	1.000	64	0%	52	28.8%	0	-	-	-	-	HMMPfam_L_HGMIC_fpl
SRPK1	6732	genome.wustl.edu	37	6	35836867	35836867	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003137.3	-1	reviewed	p.F478V	1.000	94	0%	89	31.5%	2	100%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC26A8	116369	genome.wustl.edu	37	6	35923159	35923159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052961.2	-1	reviewed	p.V668M	0.000	248	0%	280	34.6%	0	-	benign(0.003)	tolerated(0.48)	neutral(0.011)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
KCTD20	222658	genome.wustl.edu	37	6	36452493	36452493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173562.3	+1	provisional	p.L287I	1.000	364	0%	269	28.3%	1	0%	benign(0)	tolerated(1)	-	NULL
CPNE5	57699	genome.wustl.edu	37	6	36711471	36711471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020939.1	-1	reviewed	p.V520I	0.994	47	0%	32	12.5%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF53300
CPNE5	57699	genome.wustl.edu	37	6	36730765	36730765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020939.1	-1	reviewed	p.D262Y	1.000	154	0%	137	30.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
MTCH1	23787	genome.wustl.edu	37	6	36936737	36936737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014341.1	-1	provisional	p.R354Q	0.995	45	0%	39	33.3%	213	46.9%	benign(0.012)	deleterious(0.01)	neutral(0.406)	superfamily_Mitochondrial carrier
TMEM217	221468	genome.wustl.edu	37	6	37186606	37186606	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145316.3	-1	validated	p.I67	0.000	589	0%	560	16.4%	0	-	-	-	-	NULL
TBC1D22B	55633	genome.wustl.edu	37	6	37237424	37237424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017772.2	+1	validated	p.K37N	1.000	159	0%	155	10.3%	2	0%	benign(0.268)	tolerated(0.49)	neutral(0.039)	NULL
RNF8	9025	genome.wustl.edu	37	6	37336153	37336153	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000229866	+1	known	e3-1	0.996	108	0%	107	27.1%	0	-	-	-	-	-
RNF8	9025	genome.wustl.edu	37	6	37344787	37344787	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000498460	+1	known	p.Y164*	1.000	145	0%	145	29%	16	37.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MDGA1	266727	genome.wustl.edu	37	6	37622255	37622255	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153487.3	-1	validated	p.T259	0.576	65	0%	69	14.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DNAH8	1769	genome.wustl.edu	37	6	38738307	38738307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.F362C	1.000	151	0%	167	28.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38754599	38754599	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.F601	1.000	97	0%	64	23.4%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38810635	38810635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.N1384H	1.000	365	0%	216	29.2%	0	-	benign(0.108)	tolerated(0.18)	neutral(0.065)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38819380	38819380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.R1582I	1.000	151	0%	125	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38840840	38840840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.E2249K	1.000	225	0%	216	30.6%	0	-	benign(0.221)	deleterious(0.02)	neutral(0.405)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38874055	38874055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.D2857N	1.000	70	0%	85	18.8%	0	-	possibly_damaging(0.714)	deleterious(0)	deleterious(0.703)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38903431	38903431	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.E3624*	1.000	336	0%	385	28.1%	0	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38998068	38998068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.R4458Q	0.996	146	0%	127	14.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH8	1769	genome.wustl.edu	37	6	38998104	38998104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001371.2	+1	validated	p.R4470Q	0.983	160	0%	113	23.9%	0	-	possibly_damaging(0.435)	tolerated(0.6)	neutral(0.146)	HMMPfam_Dynein_heavy
DAAM2	23500	genome.wustl.edu	37	6	39869137	39869137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015345.2	+1	validated	p.F956L	1.000	228	0%	200	31.5%	3	66.6%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
LRFN2	57497	genome.wustl.edu	37	6	40400810	40400810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020737.1	-1	provisional	p.F15L	1.000	37	0%	39	28.2%	0	-	benign(0.003)	tolerated(1)	-	NULL
UNC5CL	222643	genome.wustl.edu	37	6	41002633	41002633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173561.1	-1	provisional	p.E61*	0.051	179	0%	217	33.2%	2	50%	-	-	-	NULL
APOBEC2	10930	genome.wustl.edu	37	6	41029101	41029101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006789.3	+1	validated	p.F56L	1.000	103	0%	130	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APOBEC_N
NFYA	4800	genome.wustl.edu	37	6	41048549	41048549	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002505.4	+1	reviewed	e2-1	1.000	40	0%	52	28.8%	0	-	-	-	-	-
TREM2	54209	genome.wustl.edu	37	6	41129073	41129073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018965.2	-1	reviewed	p.L107F	0.959	101	0%	84	31%	34	0%	benign(0.049)	tolerated(0.2)	neutral(0.052)	HMMPfam_V-set,superfamily_Immunoglobulin
TREML2	79865	genome.wustl.edu	37	6	41160199	41160199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024807.2	-1	validated	p.R311I	0.634	63	0%	57	28.1%	0	-	probably_damaging(0.981)	tolerated(0.1)	deleterious(0.712)	NULL
TREML4	285852	genome.wustl.edu	37	6	41196752	41196752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198153.2	+1	validated	p.L122I	0.001	108	0%	106	25.5%	0	-	possibly_damaging(0.862)	tolerated(0.14)	deleterious(0.583)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TREM1	54210	genome.wustl.edu	37	6	41250490	41250490	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018643.2	-1	provisional	e2-1	0.046	314	0%	308	26%	0	-	-	-	-	-
NCR2	9436	genome.wustl.edu	37	6	41309820	41309820	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004828.3	+1	validated	p.L193	0.041	89	0%	119	36.1%	0	-	-	-	-	NULL
UBR2	23304	genome.wustl.edu	37	6	42573592	42573592	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015255.2	+1	reviewed	p.R266*	1.000	96	0%	87	31%	0	-	-	-	-	HMMPfam_ClpS,superfamily_ClpS-like
UBR2	23304	genome.wustl.edu	37	6	42633200	42633200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015255.2	+1	reviewed	p.S1251Y	1.000	338	0%	378	20.1%	0	-	benign(0.184)	tolerated(0.05)	neutral(0.362)	NULL
PRPH2	5961	genome.wustl.edu	37	6	42672347	42672347	+	Missense_Mutation	SNP	C	C	T	rs121918567		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000322.4	-1	reviewed	p.R195Q	1.000	39	0%	65	38.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
KIAA0240	23506	genome.wustl.edu	37	6	42832563	42832563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015349.1	+1	validated	p.M873I	0.057	114	0%	103	34%	2	50%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
CNPY3	10695	genome.wustl.edu	37	6	42903327	42903327	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006586.3	+1	validated	p.I97	0.921	38	0%	92	23.9%	71	29.5%	-	-	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43018867	43018867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014780.4	-1	reviewed	p.R358C	1.000	88	0%	136	22.1%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CUL9	23113	genome.wustl.edu	37	6	43166400	43166400	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015089.2	+1	validated	p.R953*	0.072	221	0%	294	32%	0	-	-	-	-	superfamily_ARM repeat
TTBK1	84630	genome.wustl.edu	37	6	43250666	43250666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032538.1	+1	validated	p.N730D	0.934	108	0%	124	13.7%	0	-	possibly_damaging(0.791)	tolerated(0.24)	neutral(0.334)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43306763	43306763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014345.2	-1	validated	p.V1658A	0.003	228	0%	222	31.1%	2	100%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43325291	43325291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014345.2	-1	validated	p.R254Q	1.000	228	0%	264	26.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
POLR1C	9533	genome.wustl.edu	37	6	43487162	43487162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203290.1	+1	validated	p.R78Q	0.398	68	0%	92	26.1%	40	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_RNA_POL_D_30KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662
POLH	5429	genome.wustl.edu	37	6	43582112	43582112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006502.2	+1	reviewed	p.H654N	1.000	200	0%	160	31.2%	5	20%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TCTE1	202500	genome.wustl.edu	37	6	44254079	44254079	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182539.3	-1	validated	p.F156	0.742	26	0%	24	33.3%	0	-	-	-	-	NULL
CDC5L	988	genome.wustl.edu	37	6	44360538	44360538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001253.2	+1	reviewed	p.Q95R	1.000	197	0%	178	23.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
CLIC5	53405	genome.wustl.edu	37	6	45870870	45870870	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114086.1	-1	validated	p.I396	0.713	117	0%	64	34.4%	1	0%	-	-	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
ENPP4	22875	genome.wustl.edu	37	6	46111231	46111231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014936.4	+1	validated	p.E406K	0.998	290	0%	401	33.9%	4	50%	benign(0.062)	tolerated(0.86)	neutral(0.005)	NULL
ENPP5	59084	genome.wustl.edu	37	6	46135426	46135426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021572.4	-1	validated	p.D192Y	1.000	108	0%	114	27.2%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TDRD6	221400	genome.wustl.edu	37	6	46658447	46658447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010870.2	+1	validated	p.S861Y	0.469	234	0%	141	25.5%	0	-	probably_damaging(0.957)	tolerated(1)	neutral(0.401)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
TDRD6	221400	genome.wustl.edu	37	6	46660025	46660025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010870.2	+1	validated	p.F1387C	1.000	479	0%	379	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
GPR116	221395	genome.wustl.edu	37	6	46821785	46821785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098518.1	-1	validated	p.E1329*	1.000	114	0%	96	25%	2	0%	-	-	-	NULL
GPR110	266977	genome.wustl.edu	37	6	46993670	46993670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153840.2	-1	validated	p.R66I	0.013	267	0%	269	29.4%	0	-	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	NULL
GPR115	221393	genome.wustl.edu	37	6	47678574	47678574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153838.3	+1	validated	p.Q84H	1.000	194	0%	153	20.3%	0	-	benign(0.066)	tolerated(0.44)	neutral(0.017)	NULL
GPR115	221393	genome.wustl.edu	37	6	47681972	47681972	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153838.3	+1	validated	p.E331*	0.975	132	0%	95	29.5%	0	-	-	-	-	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47846408	47846408	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013732.3	-1	validated	p.F707	0.986	93	1.1%	76	32.9%	0	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
PTCHD4	442213	genome.wustl.edu	37	6	47846847	47846847	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013732.3	-1	validated	p.S561*	0.994	104	0%	75	22.7%	0	-	-	-	-	HMMPfam_Patched
MUT	4594	genome.wustl.edu	37	6	49415386	49415386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000255.3	-1	reviewed	p.K519N	0.984	120	0%	122	26.2%	9	44.4%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
PGK2	5232	genome.wustl.edu	37	6	49754890	49754890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138733.4	-1	reviewed	p.S4Y	1.000	156	0%	144	34%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_PGK
PKHD1	5314	genome.wustl.edu	37	6	51491847	51491847	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138694.3	-1	reviewed	p.S3911	0.047	252	0%	243	16.5%	0	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51618146	51618146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138694.3	-1	reviewed	p.V2935L	0.297	252	0%	178	30.3%	0	-	benign(0.059)	tolerated(0.74)	neutral(0.005)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51619636	51619636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138694.3	-1	reviewed	p.E2915K	1.000	208	0%	175	30.9%	0	-	probably_damaging(0.98)	tolerated(0.8)	neutral(0.424)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51732869	51732869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138694.3	-1	reviewed	p.N2509H	0.859	148	0%	156	34.6%	0	-	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51935235	51935235	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138694.3	-1	reviewed	p.N226H	1.000	185	0%	137	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_E set domains
EFHC1	114327	genome.wustl.edu	37	6	52288760	52288760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018100.3	+1	reviewed	p.R27K	1.000	301	0%	290	34.8%	2	0%	benign(0.074)	tolerated(1)	neutral(0.005)	NULL
EFHC1	114327	genome.wustl.edu	37	6	52343876	52343876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018100.3	+1	reviewed	p.F440L	1.000	302	0%	261	30.3%	7	42.8%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMSmart_SM00676,HMMPfam_DUF1126
TRAM2	9697	genome.wustl.edu	37	6	52370434	52370434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012288.3	-1	reviewed	p.D280Y	1.000	131	0%	103	23.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
GSTA2	2939	genome.wustl.edu	37	6	52621099	52621099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000846.4	-1	reviewed	p.E32D	0.954	168	0%	116	20.7%	0	-	probably_damaging(0.97)	tolerated(0.05)	deleterious(0.758)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
GSTA3	2940	genome.wustl.edu	37	6	52764785	52764785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000847.4	-1	reviewed	p.I121L	0.000	835	0%	897	22.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
GSTA3	2940	genome.wustl.edu	37	6	52768488	52768488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000847.4	-1	reviewed	p.G42E	0.306	254	0%	198	31.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_GST_N,superfamily_Thioredoxin-like
GSTA3	2940	genome.wustl.edu	37	6	52768517	52768517	+	Missense_Mutation	SNP	C	C	A	rs186026850	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000847.4	-1	reviewed	p.E32D	0.435	229	0%	180	29.4%	0	-	probably_damaging(0.983)	tolerated(0.05)	deleterious(0.774)	HMMPfam_GST_N,superfamily_Thioredoxin-like
GSTA4	2941	genome.wustl.edu	37	6	52850330	52850330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001512.3	-1	reviewed	p.K64T	1.000	157	0%	156	33.3%	27	74%	benign(0.053)	deleterious(0.02)	neutral(0.387)	HMMPfam_GST_N,superfamily_Thioredoxin-like
ICK	22858	genome.wustl.edu	37	6	52906032	52906032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014920.3	-1	reviewed	p.M1I	1.000	144	0%	134	26.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FBXO9	26268	genome.wustl.edu	37	6	52938298	52938298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012347.4	+1	reviewed	p.R47Q	1.000	49	0%	66	31.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GCLC	2729	genome.wustl.edu	37	6	53385599	53385599	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000513939	-1	known	p.F129C	0.999	250	0%	180	21.7%	2	50%	-	-	-	superfamily_Glutamine synthetase/guanido kinase
KLHL31	401265	genome.wustl.edu	37	6	53519255	53519255	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003760.4	-1	validated	p.V272	0.998	165	0%	172	37.2%	0	-	-	-	-	HMMPfam_BACK
TINAG	27283	genome.wustl.edu	37	6	54173469	54173469	+	Missense_Mutation	SNP	G	G	A	rs180999314	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014464.3	+1	validated	p.V41I	0.000	915	0%	932	16.1%	0	-	benign(0)	tolerated(0.94)	-	NULL
TINAG	27283	genome.wustl.edu	37	6	54212180	54212180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014464.3	+1	validated	p.R255Q	1.000	138	0%	132	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
FAM83B	222584	genome.wustl.edu	37	6	54735453	54735453	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010872.1	+1	validated	p.E137*	1.000	170	0%	130	26.2%	0	-	-	-	-	HMMPfam_DUF1669,superfamily_SSF56024
FAM83B	222584	genome.wustl.edu	37	6	54792312	54792312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010872.1	+1	validated	p.R206*	1.000	133	0%	155	29%	0	-	-	-	-	HMMPfam_DUF1669,superfamily_SSF56024
FAM83B	222584	genome.wustl.edu	37	6	54805598	54805598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010872.1	+1	validated	p.K610R	0.907	229	0%	235	24.7%	1	0%	possibly_damaging(0.883)	deleterious(0.02)	deleterious(0.728)	NULL
HCRTR2	3062	genome.wustl.edu	37	6	55147252	55147252	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001526.3	+1	reviewed	p.*445Y	1.000	80	0%	68	29.4%	0	-	-	-	-	NULL
BMP5	653	genome.wustl.edu	37	6	55739585	55739585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021073.2	-1	reviewed	p.G27*	1.000	574	0%	600	16.8%	0	-	-	-	-	NULL
COL21A1	81578	genome.wustl.edu	37	6	55929421	55929421	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030820.3	-1	reviewed	e23-1	1.000	50	0%	27	22.2%	0	-	-	-	-	-
COL21A1	81578	genome.wustl.edu	37	6	55932104	55932104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030820.3	-1	reviewed	p.K706Q	1.000	167	0%	170	27.6%	0	-	benign(0.025)	tolerated(0.54)	neutral(0.009)	HMMPfam_Collagen
COL21A1	81578	genome.wustl.edu	37	6	55990341	55990341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000456983	-1	known	p.S122I	0.003	87	0%	45	20%	0	-	unknown(0)	tolerated(0.06)	-	NULL
COL21A1	81578	genome.wustl.edu	37	6	56035595	56035595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030820.3	-1	reviewed	p.K293T	1.000	66	0%	68	35.3%	0	-	probably_damaging(0.982)	tolerated(0.1)	deleterious(0.713)	HMMSmart_SM00210
DST	667	genome.wustl.edu	37	6	56334987	56334987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015548.4	-1	reviewed	p.A4849V	1.000	69	0%	55	21.8%	6	0%	probably_damaging(0.998)	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
DST	667	genome.wustl.edu	37	6	56470075	56470075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370769	-1	known	p.K2906N	0.007	110	0%	96	18.8%	0	-	benign(0.073)	deleterious(0)	neutral(0.450)	PatternScan_RIBOSOMAL_L23
DST	667	genome.wustl.edu	37	6	56473616	56473616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370769	-1	known	p.R1726I	1.000	92	0%	64	15.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56473729	56473729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370769	-1	known	p.Q1688H	0.993	261	0%	195	21%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56483538	56483538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001723.5	-1	reviewed	p.K1765T	0.998	379	0%	349	23.5%	0	-	possibly_damaging(0.922)	tolerated(0.26)	neutral(0.405)	NULL
DST	667	genome.wustl.edu	37	6	56492074	56492074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015548.4	-1	reviewed	p.S1013	0.973	221	0%	196	23.5%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56507231	56507231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015548.4	-1	reviewed	p.L80I	0.999	145	0%	133	29.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DST	667	genome.wustl.edu	37	6	56569163	56569163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370769	-1	known	p.R53Q	1.000	20	0%	31	16.1%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
KIAA1586	57691	genome.wustl.edu	37	6	56917725	56917725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020931.2	+1	validated	p.F143C	0.955	152	0%	123	30.9%	0	-	benign(0.026)	tolerated(0.08)	neutral(0.301)	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56918079	56918079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020931.2	+1	validated	p.R261I	0.507	143	0%	107	20.6%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
ZNF451	26036	genome.wustl.edu	37	6	56999628	56999628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031623.2	+1	validated	p.F221C	1.000	81	0%	73	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
KHDRBS2	202559	genome.wustl.edu	37	6	62611258	62611258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152688.2	-1	validated	p.R168C	1.000	115	0%	131	32.1%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	superfamily_SSF54791
KHDRBS2	202559	genome.wustl.edu	37	6	62995779	62995779	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152688.2	-1	validated	p.S25	0.999	33	0%	26	26.9%	0	-	-	-	-	NULL
LGSN	51557	genome.wustl.edu	37	6	63990287	63990287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016571.2	-1	reviewed	p.S390I	1.000	220	0%	163	23.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
PHF3	23469	genome.wustl.edu	37	6	64422602	64422602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015153.2	+1	provisional	p.K1706N	0.936	225	0%	199	32.2%	9	55.5%	possibly_damaging(0.671)	tolerated(0.05)	deleterious(0.583)	NULL
PHF3	23469	genome.wustl.edu	37	6	64422704	64422704	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015153.2	+1	provisional	p.Q1740	0.664	259	0%	240	25%	4	100%	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64423290	64423290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015153.2	+1	provisional	p.E1936*	1.000	335	0%	256	28.9%	14	42.8%	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	66205032	66205032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142800.1	-1	reviewed	p.S91Y	1.000	232	0%	140	22.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
BAI3	577	genome.wustl.edu	37	6	70049385	70049385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001704.2	+1	reviewed	p.L1150I	1.000	300	0%	293	18.1%	0	-	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2
BAI3	577	genome.wustl.edu	37	6	70092778	70092778	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001704.2	+1	reviewed	p.K1444T	1.000	132	0%	79	16.5%	0	-	possibly_damaging(0.907)	deleterious(0.01)	deleterious(0.766)	NULL
COL19A1	1310	genome.wustl.edu	37	6	70610155	70610155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001858.4	+1	reviewed	p.S64Y	1.000	84	0%	59	25.4%	0	-	unknown(0)	deleterious(0.03)	-	HMMSmart_TSPN
FAM135A	57579	genome.wustl.edu	37	6	71195905	71195905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020819.4	+1	validated	p.L244I	1.000	75	0%	53	32.1%	0	-	possibly_damaging(0.888)	tolerated(0.25)	neutral(0.384)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72889450	72889450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014989.4	+1	reviewed	p.R215Q	1.000	107	0%	79	19%	0	-	possibly_damaging(0.855)	tolerated(0.45)	neutral(0.342)	NULL
RIMS1	22999	genome.wustl.edu	37	6	73108756	73108756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014989.4	+1	reviewed	p.S1607F	1.000	285	0%	147	28.6%	0	-	benign(0.279)	tolerated(0.54)	neutral(0.037)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPPA5	340168	genome.wustl.edu	37	6	74063066	74063066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025290.1	-1	provisional	p.E110K	0.001	128	0%	154	32.5%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
CD109	135228	genome.wustl.edu	37	6	74476569	74476569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133493.3	+1	reviewed	p.D474Y	1.000	583	0%	531	14.1%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_A2M_N_2
COL12A1	1303	genome.wustl.edu	37	6	75818823	75818823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.E2671*	1.000	168	0%	121	22.3%	0	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL12A1	1303	genome.wustl.edu	37	6	75827140	75827140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.E2493K	0.872	189	0%	184	12%	11	0%	benign(0.004)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL12A1	1303	genome.wustl.edu	37	6	75860980	75860980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.E1342K	1.000	177	0%	153	32.7%	1	0%	probably_damaging(0.987)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL12A1	1303	genome.wustl.edu	37	6	75862060	75862060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.R1235K	1.000	108	0%	138	23.9%	0	-	benign(0.016)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL12A1	1303	genome.wustl.edu	37	6	75875478	75875478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.D910Y	0.051	227	0%	264	28%	0	-	possibly_damaging(0.921)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75898228	75898228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004370.5	-1	reviewed	p.E283*	1.000	332	0%	286	32.9%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TMEM30A	55754	genome.wustl.edu	37	6	75969151	75969151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018247.3	-1	validated	p.L199F	1.000	248	0%	140	27.9%	2	0%	benign(0.037)	tolerated(0.08)	neutral(0.302)	HMMPfam_CDC50
FILIP1	27145	genome.wustl.edu	37	6	76024113	76024113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015687.2	-1	validated	p.E479*	1.000	399	0%	380	25.8%	0	-	-	-	-	HMMPfam_CortBP2
FILIP1	27145	genome.wustl.edu	37	6	76063419	76063419	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015687.2	-1	validated	p.E155	1.000	90	0%	113	35.4%	0	-	-	-	-	HMMPfam_CortBP2
SENP6	26054	genome.wustl.edu	37	6	76344476	76344476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015571.2	+1	validated	p.R136H	1.000	55	0%	55	38.2%	3	66.6%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
MYO6	4646	genome.wustl.edu	37	6	76599898	76599898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004999.3	+1	reviewed	p.R928H	0.544	251	0%	200	25.5%	11	45.4%	unknown(0)	tolerated(0.07)	-	NULL
IMPG1	3617	genome.wustl.edu	37	6	76715036	76715036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001563.2	-1	provisional	p.S368Y	0.917	221	0%	183	26.2%	0	-	possibly_damaging(0.938)	tolerated(0.16)	neutral(0.443)	NULL
HTR1B	3351	genome.wustl.edu	37	6	78172982	78172982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000863.1	-1	provisional	p.P47T	1.000	52	0%	63	20.6%	0	-	benign(0.06)	tolerated(0.31)	neutral(0.031)	superfamily_Family A G protein-coupled receptor-like
IRAK1BP1	134728	genome.wustl.edu	37	6	79607661	79607661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010844.1	+1	provisional	p.S166Y	0.999	277	0%	199	13.1%	3	0%	possibly_damaging(0.92)	tolerated(0.09)	deleterious(0.667)	HMMPfam_DUF541
PHIP	55023	genome.wustl.edu	37	6	79655853	79655853	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017934.5	-1	validated	p.E1499*	0.998	378	0%	357	22.4%	2	0%	-	-	-	NULL
PHIP	55023	genome.wustl.edu	37	6	79668241	79668241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017934.5	-1	validated	p.I1245V	1.000	148	0%	104	25%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
PHIP	55023	genome.wustl.edu	37	6	79672846	79672846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017934.5	-1	validated	p.I1168S	1.000	539	0%	403	32.8%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
PHIP	55023	genome.wustl.edu	37	6	79672943	79672943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017934.5	-1	validated	p.S1136G	1.000	340	0%	266	32.3%	0	-	benign(0.107)	tolerated(0.5)	neutral(0.019)	NULL
HMGN3	9324	genome.wustl.edu	37	6	79911410	79911410	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004242.2	-1	reviewed	p.E99*	1.000	141	0%	105	25.7%	171	46.1%	-	-	-	NULL
TTK	7272	genome.wustl.edu	37	6	80715624	80715624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003318.4	+1	reviewed	p.D22Y	1.000	214	0%	161	22.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TTK	7272	genome.wustl.edu	37	6	80746296	80746296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003318.4	+1	reviewed	p.S677R	1.000	169	0.6%	121	27.3%	8	12.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BCKDHB	594	genome.wustl.edu	37	6	80982905	80982905	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000056.3	+1	reviewed	p.G335	0.972	156	0%	113	27.4%	6	66.6%	-	-	-	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
IBTK	25998	genome.wustl.edu	37	6	82935291	82935291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015525.2	-1	reviewed	p.V243A	1.000	102	0%	116	31.9%	5	20%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_RCC1/BLIP-II
IBTK	25998	genome.wustl.edu	37	6	82949920	82949920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015525.2	-1	reviewed	p.F95C	1.000	134	0.7%	146	27.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
UBE3D	90025	genome.wustl.edu	37	6	83728789	83728789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198920.1	-1	provisional	p.F305L	0.392	149	0%	68	16.2%	1	0%	possibly_damaging(0.949)	tolerated(0.33)	neutral(0.417)	HMMPfam_DUF2351
DOPEY1	23033	genome.wustl.edu	37	6	83848462	83848462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015018.2	+1	validated	p.F1567L	0.980	204	0%	177	27.7%	1	100%	benign(0.01)	tolerated(0.71)	neutral(0.002)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83856993	83856993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015018.2	+1	validated	p.F1905L	1.000	92	0%	68	16.2%	0	-	possibly_damaging(0.476)	tolerated(0.77)	neutral(0.158)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83862061	83862061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015018.2	+1	validated	p.V2035A	1.000	138	0%	117	33.3%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83865766	83865766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015018.2	+1	validated	p.F2183C	1.000	173	0%	143	28%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRSS35	167681	genome.wustl.edu	37	6	84234152	84234152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153362.2	+1	validated	p.S331Y	1.000	222	0%	169	14.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MRAP2	112609	genome.wustl.edu	37	6	84772652	84772652	+	Silent	SNP	C	C	T	rs150284745		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138409.2	+1	validated	p.F56	0.829	351	0%	275	26.9%	0	-	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84865186	84865186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014895.2	-1	validated	p.S942Y	1.000	321	0%	281	28.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HTR1E	3354	genome.wustl.edu	37	6	87725686	87725686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000865.2	+1	validated	p.L212I	1.000	326	0%	325	25.5%	0	-	probably_damaging(0.998)	tolerated(0.42)	deleterious(0.488)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF292	23036	genome.wustl.edu	37	6	87969153	87969153	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015021.1	+1	validated	p.E1936*	1.000	56	0%	52	28.8%	0	-	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87970379	87970379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015021.1	+1	validated	p.K2344N	0.984	203	0%	162	31.5%	0	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	NULL
C6orf162	57150	genome.wustl.edu	37	6	88046785	88046785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042493.1	+1	validated	p.K12N	0.889	333	0%	313	20.1%	5	40%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
ORC3	23595	genome.wustl.edu	37	6	88313169	88313169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181837.1	+1	reviewed	p.S82Y	0.602	188	0.5%	121	24%	0	-	benign(0.264)	tolerated(0.07)	neutral(0.347)	HMMPfam_ORC3_N
ORC3	23595	genome.wustl.edu	37	6	88367685	88367685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181837.1	+1	reviewed	p.K548T	0.651	91	0%	74	40.5%	27	51.8%	benign(0.403)	tolerated(0.13)	neutral(0.382)	NULL
SPACA1	81833	genome.wustl.edu	37	6	88767409	88767409	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030960.2	+1	reviewed	p.C115	1.000	78	0%	44	27.3%	0	-	-	-	-	NULL
CNR1	1268	genome.wustl.edu	37	6	88854253	88854253	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016083.4	-1	reviewed	p.I247	0.009	69	0%	60	10%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNGTT	8732	genome.wustl.edu	37	6	89511327	89511327	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003800.3	-1	validated	p.E432*	1.000	202	0%	118	26.3%	0	-	-	-	-	HMMPfam_mRNA_cap_enzyme,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
GABRR1	2569	genome.wustl.edu	37	6	89895099	89895099	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002042.3	-1	reviewed	p.R242	1.000	268	0%	249	22.1%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
MDN1	23195	genome.wustl.edu	37	6	90393043	90393043	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014611.1	-1	provisional	p.L3970	0.999	51	0%	57	19.3%	0	-	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90409352	90409352	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014611.1	-1	provisional	p.R2989*	0.637	185	0%	149	32.9%	0	-	-	-	-	NULL
EPHA7	2045	genome.wustl.edu	37	6	93973600	93973600	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004440.3	-1	reviewed	p.G592	0.837	137	0%	171	30.4%	3	33.3%	-	-	-	NULL
UFL1	23376	genome.wustl.edu	37	6	96985307	96985307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015323.4	+1	validated	p.R287I	1.000	200	0%	219	28.8%	6	33.3%	possibly_damaging(0.767)	tolerated(0.06)	deleterious(0.607)	NULL
UFL1	23376	genome.wustl.edu	37	6	97001344	97001344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015323.4	+1	validated	p.L784I	1.000	119	0%	99	29.3%	5	20%	probably_damaging(0.987)	tolerated(0.29)	neutral(0.466)	NULL
FHL5	9457	genome.wustl.edu	37	6	97063516	97063516	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020482.4	+1	reviewed	p.Q241	1.000	150	0%	102	18.6%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
GPR63	81491	genome.wustl.edu	37	6	97246445	97246445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143957.1	-1	validated	p.K388T	1.000	201	0%	122	31.1%	0	-	possibly_damaging(0.492)	deleterious(0.02)	deleterious(0.547)	superfamily_Family A G protein-coupled receptor-like
MMS22L	253714	genome.wustl.edu	37	6	97677022	97677022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198468.2	-1	predicted	p.S596*	0.998	155	0%	205	29.8%	0	-	-	-	-	NULL
USP45	85015	genome.wustl.edu	37	6	99936646	99936646	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080481.1	-1	provisional	p.E177*	0.949	123	0%	64	20.3%	0	-	-	-	-	NULL
ASCC3	10973	genome.wustl.edu	37	6	101053536	101053536	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006828.2	-1	validated	p.F1695	1.000	91	0%	89	31.5%	5	0%	-	-	-	superfamily_SSF52540
GRIK2	2898	genome.wustl.edu	37	6	102124560	102124560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021956.4	+1	reviewed	p.R202S	1.000	151	0%	116	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIK2	2898	genome.wustl.edu	37	6	102483389	102483389	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021956.4	+1	reviewed	p.T753	1.000	485	0%	560	25.2%	3	0%	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
POPDC3	64208	genome.wustl.edu	37	6	105609758	105609758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022361.4	-1	reviewed	p.K9N	0.843	132	0%	178	30.3%	1	100%	benign(0.071)	tolerated(0.41)	neutral(0.020)	NULL
AIM1	202	genome.wustl.edu	37	6	106987294	106987294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001624.2	+1	validated	p.E1171*	1.000	234	0%	259	22%	1	0%	-	-	-	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
AIM1	202	genome.wustl.edu	37	6	107000084	107000084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001624.2	+1	validated	p.R1414Q	0.966	139	0%	103	25.2%	0	-	possibly_damaging(0.673)	tolerated(0.35)	neutral(0.260)	superfamily_G_crystallin_SF
RTN4IP1	84816	genome.wustl.edu	37	6	107076714	107076714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032730.4	-1	reviewed	p.Q61H	0.992	175	0%	228	28.1%	20	25%	possibly_damaging(0.445)	tolerated(0.06)	neutral(0.468)	superfamily_GroES-like
C6orf203	51250	genome.wustl.edu	37	6	107365516	107365516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142470.1	+1	validated	p.L180V	0.997	153	0%	178	21.9%	16	43.7%	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	NULL
SCML4	256380	genome.wustl.edu	37	6	108066263	108066263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198081.3	-1	validated	p.K191R	1.000	19	0%	21	28.6%	0	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	NULL
LACE1	246269	genome.wustl.edu	37	6	108676882	108676882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145315.3	+1	reviewed	p.D147G	1.000	156	0%	162	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AFG1_ATPase,superfamily_SSF52540
AKD1	221264	genome.wustl.edu	37	6	109827541	109827541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000470564	-1	known	p.E451*	1.000	177	0%	132	23.5%	0	-	possibly_damaging(0.929)	tolerated(0.46)	neutral(0.388)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AKD1	221264	genome.wustl.edu	37	6	109863281	109863281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424296	-1	known	p.L186I	0.820	124	0%	76	27.6%	0	-	possibly_damaging(0.866)	tolerated(0.19)	neutral(0.385)	superfamily_SSF52540
AKD1	221264	genome.wustl.edu	37	6	109980442	109980442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145128.2	-1	provisional	p.E207K	1.000	143	0%	96	33.3%	1	0%	probably_damaging(0.984)	tolerated(0.14)	deleterious(0.680)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
FIG4	9896	genome.wustl.edu	37	6	110037745	110037745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014845.5	+1	reviewed	p.R88Q	1.000	356	0%	293	18.4%	1	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
CDC40	51362	genome.wustl.edu	37	6	110528719	110528719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015891.2	+1	reviewed	p.L139F	0.995	174	0%	149	16.8%	2	0%	possibly_damaging(0.795)	tolerated(0.06)	deleterious(0.621)	NULL
METTL24	728464	genome.wustl.edu	37	6	110620165	110620165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001123364.1	-1	inferred	p.R249I	1.000	227	0%	251	25.9%	0	-	possibly_damaging(0.838)	deleterious(0.03)	deleterious(0.684)	NULL
SLC22A16	85413	genome.wustl.edu	37	6	110763569	110763569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033125.2	-1	provisional	p.S354I	0.019	455	0%	418	23.2%	1	0%	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RPF2	84154	genome.wustl.edu	37	6	111310216	111310216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000454951	+1	known	p.N9H	0.501	68	0%	77	24.7%	0	-	possibly_damaging(0.886)	-	-	HMMPfam_Brix
RPF2	84154	genome.wustl.edu	37	6	111337050	111337050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032194.1	+1	validated	p.R196Q	1.000	78	0%	81	23.5%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Brix
REV3L	5980	genome.wustl.edu	37	6	111694539	111694539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002912.3	-1	validated	p.L1673F	1.000	239	0%	180	28.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111694807	111694807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002912.3	-1	validated	p.R1584Q	1.000	702	0%	531	22.4%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111710353	111710353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002912.3	-1	validated	p.R273I	1.000	470	0%	397	29.2%	0	-	probably_damaging(0.998)	-	-	superfamily_Ribonuclease H-like
FYN	2534	genome.wustl.edu	37	6	112015891	112015891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002037.3	-1	reviewed	p.F353L	1.000	268	0%	258	28.7%	9	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TUBE1	51175	genome.wustl.edu	37	6	112397272	112397272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016262.4	-1	reviewed	p.S227Y	1.000	241	0%	182	24.2%	0	-	benign(0.133)	deleterious(0.03)	neutral(0.376)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TUBE1	51175	genome.wustl.edu	37	6	112407803	112407803	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016262.4	-1	reviewed	p.I36M	1.000	45	0%	46	28.3%	5	60%	possibly_damaging(0.459)	deleterious(0.03)	deleterious(0.515)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
LAMA4	3910	genome.wustl.edu	37	6	112460366	112460366	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105206.1	-1	reviewed	p.R1080*	0.984	425	0%	224	28.1%	2	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
NT5DC1	221294	genome.wustl.edu	37	6	116560282	116560282	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152729.2	+1	reviewed	p.I416	0.906	110	0%	76	35.5%	16	31.2%	-	-	-	HMMPfam_5_nucleotid
DSE	29940	genome.wustl.edu	37	6	116758194	116758194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080976.1	+1	reviewed	p.E855*	1.000	134	0%	151	32.5%	3	33.3%	-	-	-	NULL
KPNA5	3841	genome.wustl.edu	37	6	117050895	117050895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002269.2	+1	reviewed	p.E475K	1.000	284	0%	294	35%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_ARM repeat
FAM162B	221303	genome.wustl.edu	37	6	117086375	117086375	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085480.2	-1	validated	p.F72	0.986	40	0%	36	41.7%	0	-	-	-	-	HMMPfam_DUF1075
GPRC6A	222545	genome.wustl.edu	37	6	117113328	117113328	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148963.2	-1	validated	p.R920*	0.510	511	0%	471	20.2%	0	-	-	-	-	NULL
GPRC6A	222545	genome.wustl.edu	37	6	117114214	117114214	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148963.2	-1	validated	p.V624	0.975	353	0%	317	36%	0	-	-	-	-	HMMPfam_7tm_3
GPRC6A	222545	genome.wustl.edu	37	6	117127966	117127966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148963.2	-1	validated	p.A301D	1.000	280	0%	255	27.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GPRC6A	222545	genome.wustl.edu	37	6	117128327	117128327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148963.2	-1	validated	p.R181C	0.309	357	0%	313	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RFX6	222546	genome.wustl.edu	37	6	117240311	117240311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173560.2	+1	validated	p.D345A	1.000	140	0%	138	19.6%	0	-	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	NULL
RFX6	222546	genome.wustl.edu	37	6	117245947	117245947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173560.2	+1	validated	p.K557N	1.000	137	0%	122	23%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ROS1	6098	genome.wustl.edu	37	6	117647532	117647532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002944.2	-1	reviewed	p.K1804N	0.830	154	0%	93	25.8%	0	-	benign(0.039)	tolerated(0.46)	neutral(0.014)	HMMSmart_FN3,superfamily_FN_III-like
ROS1	6098	genome.wustl.edu	37	6	117663595	117663595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002944.2	-1	reviewed	p.G1546E	1.000	179	0%	108	34.3%	0	-	benign(0.21)	deleterious(0.02)	neutral(0.404)	NULL
ROS1	6098	genome.wustl.edu	37	6	117710875	117710875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002944.2	-1	reviewed	p.R466Q	0.982	135	0%	105	39%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	superfamily_SSF63825
FAM184A	79632	genome.wustl.edu	37	6	119285843	119285843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024581.4	-1	validated	p.P1043T	1.000	42	0%	48	22.9%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121563367	121563367	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152730.4	-1	validated	p.R713*	0.800	229	0%	173	24.9%	0	-	-	-	-	NULL
C6orf170	221322	genome.wustl.edu	37	6	121613231	121613231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152730.4	-1	validated	p.K447T	0.979	230	0%	142	34.5%	0	-	benign(0.411)	tolerated(0.5)	neutral(0.143)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121624829	121624829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152730.4	-1	validated	p.K338N	0.991	171	0%	69	30.4%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
GJA1	2697	genome.wustl.edu	37	6	121768294	121768294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000165.3	+1	reviewed	p.R101*	0.971	114	0%	124	26.6%	25	36%	-	-	-	HMMPfam_Connexin
SERINC1	57515	genome.wustl.edu	37	6	122766249	122766249	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020755.2	-1	provisional	p.I434	0.158	145	0%	94	21.3%	35	28.5%	-	-	-	HMMPfam_Serinc
TRDN	10345	genome.wustl.edu	37	6	123687296	123687296	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006073.2	-1	validated	p.A435	0.996	185	0%	169	11.8%	0	-	-	-	-	NULL
NCOA7	135112	genome.wustl.edu	37	6	126210198	126210198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181782.3	+1	validated	p.R333L	1.000	318	0%	282	27%	0	-	benign(0.11)	deleterious(0.01)	neutral(0.414)	NULL
NCOA7	135112	genome.wustl.edu	37	6	126210307	126210307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181782.3	+1	validated	p.E369D	0.000	237	0%	224	22.8%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
TRMT11	60487	genome.wustl.edu	37	6	126319454	126319454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031712.2	+1	validated	p.R127Q	0.996	240	0%	134	28.4%	0	-	possibly_damaging(0.747)	tolerated(0.06)	deleterious(0.597)	NULL
ECHDC1	55862	genome.wustl.edu	37	6	127611308	127611308	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001139510.1	-1	validated	p.K210N	1.000	324	0%	250	28%	32	40.6%	benign(0.156)	tolerated(0.27)	neutral(0.048)	HMMPfam_ECH,superfamily_ClpP/crotonase
ECHDC1	55862	genome.wustl.edu	37	6	127652168	127652168	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001139510.1	-1	validated	p.A8	0.017	101	0%	84	26.2%	14	14.2%	-	-	-	NULL
LAMA2	3908	genome.wustl.edu	37	6	129573320	129573320	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.S659*	0.068	143	0.7%	99	35.4%	0	-	-	-	-	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
LAMA2	3908	genome.wustl.edu	37	6	129581958	129581958	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.S733	0.985	226	0%	252	31%	0	-	-	-	-	superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2
LAMA2	3908	genome.wustl.edu	37	6	129687395	129687395	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.L1583	0.986	153	0.7%	109	32.1%	3	0%	-	-	-	superfamily_ConA_like_lec_gl
LAMA2	3908	genome.wustl.edu	37	6	129712668	129712668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.T1702A	1.000	501	0%	374	14.2%	0	-	probably_damaging(1)	tolerated(0.59)	deleterious(0.504)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
LAMA2	3908	genome.wustl.edu	37	6	129775318	129775318	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.E2198*	1.000	91	0%	89	42.7%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
LAMA2	3908	genome.wustl.edu	37	6	129835569	129835569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000426.3	+1	reviewed	p.A3014T	1.000	128	0%	160	23.7%	16	0%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
L3MBTL3	84456	genome.wustl.edu	37	6	130454721	130454721	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032438.1	+1	validated	p.V697	0.305	109	0%	123	24.4%	1	0%	-	-	-	NULL
SAMD3	154075	genome.wustl.edu	37	6	130467298	130467298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017373.2	-1	validated	p.R351I	1.000	215	0%	163	23.3%	1	0%	possibly_damaging(0.805)	deleterious(0.02)	deleterious(0.686)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130505720	130505720	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017373.2	-1	validated	p.T144	0.176	316	0%	249	28.1%	3	0%	-	-	-	NULL
MED23	9439	genome.wustl.edu	37	6	131929091	131929091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004830.2	-1	reviewed	p.D400N	1.000	193	0%	201	26.9%	1	100%	possibly_damaging(0.61)	tolerated(0.28)	neutral(0.243)	NULL
CTAGE9	643854	genome.wustl.edu	37	6	132030203	132030203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145659.1	-1	provisional	p.K652R	0.000	537	0%	390	15.6%	1	0%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
CTAGE9	643854	genome.wustl.edu	37	6	132030636	132030636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145659.1	-1	provisional	p.D508N	0.000	429	0%	370	22.2%	0	-	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	NULL
TAAR9	134860	genome.wustl.edu	37	6	132860466	132860466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175057.3	+1	reviewed	p.E346D	0.000	55	0%	68	36.8%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_Family A G protein-coupled receptor-like
VNN2	8875	genome.wustl.edu	37	6	133073750	133073750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004665.2	-1	reviewed	p.D226Y	0.191	432	0%	465	33.5%	2	100%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	superfamily_Ntlse/CNhydtse
EYA4	2070	genome.wustl.edu	37	6	133804194	133804194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004100.4	+1	reviewed	p.E378*	1.000	146	0%	124	20.2%	0	-	-	-	-	HMMPfam_Hydrolase
BCLAF1	9774	genome.wustl.edu	37	6	136597111	136597111	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014739.2	-1	reviewed	p.N518H	1.000	474	0%	569	10.7%	3	0%	unknown(0)	-	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913420	136913420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005923.3	-1	reviewed	p.S1039Y	1.000	263	0%	236	28.4%	2	100%	possibly_damaging(0.911)	deleterious(0.04)	deleterious(0.712)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	137019666	137019666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005923.3	-1	reviewed	p.R256H	1.000	159	0%	168	22%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC35D3	340146	genome.wustl.edu	37	6	137245432	137245432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008783.1	+1	provisional	p.F283L	1.000	25	0%	21	38.1%	0	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMPfam_UAA
IL20RA	53832	genome.wustl.edu	37	6	137325829	137325829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014432.2	-1	reviewed	p.L265I	0.979	279	0%	273	25.6%	5	20%	benign(0.018)	tolerated(0.57)	neutral(0.007)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139197634	139197634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077706.1	+1	validated	p.S535Y	0.055	79	0%	67	35.8%	0	-	benign(0.013)	tolerated(0.1)	neutral(0.287)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139206668	139206668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077706.1	+1	validated	p.R685Q	1.000	173	0%	156	22.4%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ECT2L	345930	genome.wustl.edu	37	6	139206840	139206840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077706.1	+1	validated	p.R711Q	0.339	160	0%	151	26.5%	0	-	benign(0.031)	tolerated(1)	neutral(0.002)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
REPS1	85021	genome.wustl.edu	37	6	139265101	139265101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031922.3	-1	validated	p.R269C	1.000	176	0.6%	144	29.9%	9	22.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF47473
LTV1	84946	genome.wustl.edu	37	6	144179020	144179020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032860.3	+1	provisional	p.R224K	0.010	226	0%	156	34%	16	31.2%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_LTV
UTRN	7402	genome.wustl.edu	37	6	144612999	144612999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007124.2	+1	reviewed	p.D12G	0.305	58	0%	64	23.4%	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
UTRN	7402	genome.wustl.edu	37	6	144795810	144795810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007124.2	+1	reviewed	p.R1084Q	0.760	152	0%	112	35.7%	0	-	benign(0.022)	tolerated(0.44)	neutral(0.014)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	145157514	145157514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007124.2	+1	reviewed	p.S3301L	1.000	322	0%	259	19.7%	0	-	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	NULL
GRM1	2911	genome.wustl.edu	37	6	146350983	146350983	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000838.3	+1	reviewed	p.W110*	1.000	75	0%	61	23%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146755635	146755635	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000838.3	+1	reviewed	p.D1096	0.901	66	0%	77	13%	0	-	-	-	-	NULL
STXBP5	134957	genome.wustl.edu	37	6	147599230	147599230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127715.1	+1	reviewed	p.V243A	0.998	182	0%	155	28.4%	2	100%	benign(0.228)	tolerated(0.14)	neutral(0.272)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STXBP5	134957	genome.wustl.edu	37	6	147684753	147684753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127715.1	+1	reviewed	p.S943L	1.000	221	0%	175	25.1%	6	16.6%	possibly_damaging(0.9)	deleterious(0.05)	deleterious(0.702)	NULL
SASH1	23328	genome.wustl.edu	37	6	148852767	148852767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015278.3	+1	validated	p.R512C	1.000	109	0%	65	10.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SASH1	23328	genome.wustl.edu	37	6	148854906	148854906	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015278.3	+1	validated	e15-1	1.000	221	0%	162	22.8%	0	-	-	-	-	-
UST	10090	genome.wustl.edu	37	6	149342530	149342530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005715.2	+1	validated	p.L284F	1.000	142	0%	108	21.3%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HS2ST
ZC3H12D	340152	genome.wustl.edu	37	6	149795498	149795498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207360.2	-1	validated	p.R61Q	0.948	18	0%	17	35.3%	0	-	probably_damaging(0.994)	tolerated(0.34)	deleterious(0.475)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149854644	149854644	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139126.2	-1	reviewed	p.E210*	1.000	214	0%	209	24.4%	1	0%	-	-	-	NULL
PPIL4	85313	genome.wustl.edu	37	6	149855846	149855846	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139126.2	-1	reviewed	p.R177*	1.000	196	0%	181	24.3%	5	0%	-	-	-	NULL
KATNA1	11104	genome.wustl.edu	37	6	149925801	149925801	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007044.2	-1	reviewed	p.R207*	1.000	117	0%	96	21.9%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
KATNA1	11104	genome.wustl.edu	37	6	149944402	149944402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007044.2	-1	reviewed	p.R113I	1.000	159	0%	179	35.2%	10	0%	possibly_damaging(0.692)	tolerated(0.07)	deleterious(0.567)	NULL
LATS1	9113	genome.wustl.edu	37	6	150001374	150001374	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004690.2	-1	reviewed	p.R744*	1.000	448	0.2%	447	22.8%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NUP43	348995	genome.wustl.edu	37	6	150063573	150063573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198887.1	-1	validated	p.R152Q	1.000	72	0%	79	32.9%	4	25%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMSmart_WD40,superfamily_WD40_like
IYD	389434	genome.wustl.edu	37	6	150713566	150713566	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203395.2	+1	reviewed	p.I152	0.974	75	0%	53	15.1%	0	-	unknown(0)	-	-	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like
PLEKHG1	57480	genome.wustl.edu	37	6	151152620	151152620	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029884.1	+1	provisional	p.Q791	0.997	91	0%	61	29.5%	5	60%	-	-	-	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151239797	151239797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015440.3	+1	validated	p.R326Q	1.000	176	0%	146	34.2%	4	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151293095	151293095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015440.3	+1	validated	p.F676L	1.000	157	0%	167	29.9%	14	57.1%	benign(0.135)	tolerated(0.6)	neutral(0.016)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP12	9590	genome.wustl.edu	37	6	151626960	151626960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005100.3	+1	reviewed	p.L81I	0.012	55	0%	60	20%	0	-	probably_damaging(0.991)	tolerated(0.36)	neutral(0.464)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151671147	151671147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005100.3	+1	reviewed	p.D541Y	0.900	109	0%	175	23.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152476160	152476160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.R7999Q	0.996	331	0%	278	18.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin
SYNE1	23345	genome.wustl.edu	37	6	152510449	152510449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.I7747V	1.000	207	0%	188	23.9%	0	-	benign(0.001)	tolerated(0.88)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152534785	152534785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.N7486D	1.000	379	0%	229	29.7%	1	0%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152536190	152536190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.Q7399H	1.000	188	0%	87	17.2%	0	-	benign(0.008)	tolerated(0.79)	neutral(0.001)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152557996	152557996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.E6719K	1.000	93	0%	67	13.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152605163	152605163	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.R6053*	1.000	151	0%	183	29%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152646280	152646280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.A5199V	1.000	157	0%	181	24.3%	0	-	benign(0.036)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152652143	152652143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.K4559N	0.591	343	0%	275	30.5%	0	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152673279	152673279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.F3821L	0.926	244	0%	196	32.1%	0	-	probably_damaging(0.998)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152716683	152716683	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.V2560	1.000	366	0%	368	26.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152763363	152763363	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000367248	-1	known	p.L844I	1.000	112	0%	89	18%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152832181	152832181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182961.2	-1	reviewed	p.L123I	1.000	290	0%	265	25.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
VIP	7432	genome.wustl.edu	37	6	153077285	153077285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003381.2	+1	reviewed	p.D118Y	1.000	240	0%	184	26.1%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
OPRM1	4988	genome.wustl.edu	37	6	154411040	154411040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145279.1	+1	reviewed	p.P217S	1.000	345	0%	354	24.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
IPCEF1	26034	genome.wustl.edu	37	6	154481128	154481128	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130699.1	-1	validated	p.P384	0.278	264	0%	236	30.5%	0	-	-	-	-	NULL
IPCEF1	26034	genome.wustl.edu	37	6	154520910	154520910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130699.1	-1	validated	p.S268R	1.000	457	0%	313	16%	1	0%	possibly_damaging(0.531)	tolerated(0.11)	neutral(0.451)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155109056	155109056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014892.3	+1	validated	p.R74Q	1.000	293	0%	263	29.3%	1	100%	unknown(0)	tolerated(0.08)	-	HMMSmart_RPR,HMMPfam_DUF618,superfamily_ENTH_VHS
SCAF8	22828	genome.wustl.edu	37	6	155154194	155154194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014892.3	+1	validated	p.D1161N	1.000	233	0%	101	29.7%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155574087	155574087	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012454.3	+1	reviewed	p.S1375	0.001	64	0%	52	25%	0	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
ARID1B	57492	genome.wustl.edu	37	6	157527627	157527627	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017519.2	+1	validated	p.F1766	0.996	111	0%	138	30.4%	12	50%	-	-	-	NULL
TMEM242	729515	genome.wustl.edu	37	6	157714019	157714019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018452.4	-1	validated	p.R114*	1.000	182	0%	134	29.9%	10	10%	-	-	-	HMMPfam_DUF1358
SYNJ2	8871	genome.wustl.edu	37	6	158517390	158517390	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003898.3	+1	reviewed	p.K1495N	0.813	70	0%	64	23.4%	4	0%	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
TULP4	56995	genome.wustl.edu	37	6	158850873	158850873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020245.3	+1	validated	p.E163K	1.000	333	0%	246	28.9%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like
TAGAP	117289	genome.wustl.edu	37	6	159459225	159459225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054114.3	-1	reviewed	p.C273*	1.000	132	0%	128	14.1%	6	0%	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
TAGAP	117289	genome.wustl.edu	37	6	159463198	159463198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054114.3	-1	reviewed	p.A76D	0.002	470	0%	438	15.1%	0	-	benign(0.282)	tolerated(0.62)	neutral(0.090)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160453726	160453726	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000876.2	+1	reviewed	p.T342	0.975	156	0%	128	21.9%	0	-	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160465616	160465616	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000876.2	+1	reviewed	p.L564	0.367	104	0%	107	36.4%	0	-	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160557336	160557336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003057.2	+1	reviewed	p.K308N	1.000	149	1.3%	135	25.2%	0	-	benign(0.212)	tolerated(0.35)	neutral(0.041)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A3	6581	genome.wustl.edu	37	6	160864732	160864732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021977.2	+1	reviewed	p.R490W	1.000	60	0%	44	22.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_MFS general substrate transporter
LPA	4018	genome.wustl.edu	37	6	160952893	160952893	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005577.2	-1	reviewed	p.F1997	0.795	156	0%	210	21.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MAP3K4	4216	genome.wustl.edu	37	6	161529823	161529823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005922.2	+1	reviewed	p.E1390K	0.995	344	0%	292	30.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PARK2	5071	genome.wustl.edu	37	6	161966459	161966459	+	Missense_Mutation	SNP	C	C	T	rs147756270	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000366892	-1	known	p.R365Q	0.000	78	0%	37	16.2%	0	-	unknown(0)	-	-	NULL
QKI	9444	genome.wustl.edu	37	6	163984467	163984467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006775.2	+1	validated	p.S217Y	1.000	137	0%	122	35.2%	6	0%	unknown(0)	deleterious(0.03)	-	NULL
PDE10A	10846	genome.wustl.edu	37	6	165792768	165792768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130690.1	-1	validated	p.D634N	0.003	252	0%	187	26.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE10A	10846	genome.wustl.edu	37	6	165827174	165827174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130690.1	-1	validated	p.E365*	0.944	88	0%	45	31.1%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PDE10A	10846	genome.wustl.edu	37	6	165832255	165832255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130690.1	-1	validated	p.K289T	1.000	156	0%	98	34.7%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
GPR31	2853	genome.wustl.edu	37	6	167570890	167570890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005299.2	-1	validated	p.A144T	0.000	57	0%	63	28.6%	0	-	benign(0.099)	tolerated(0.35)	neutral(0.028)	HMMPfam_7tm_1,superfamily_SSF81321
TCP10L2	401285	genome.wustl.edu	37	6	167587310	167587310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145121.1	+1	inferred	p.H72N	0.000	182	0%	165	18.2%	0	-	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
TCP10L2	401285	genome.wustl.edu	37	6	167590526	167590526	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145121.1	+1	inferred	p.A134	0.007	168	0%	164	11.6%	0	-	-	-	-	NULL
TTLL2	83887	genome.wustl.edu	37	6	167754505	167754505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031949.4	+1	validated	p.D373Y	1.000	290	0%	444	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
KIF25	3834	genome.wustl.edu	37	6	168431493	168431493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030615.2	+1	reviewed	p.D45Y	0.047	65	0%	65	30.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
THBS2	7058	genome.wustl.edu	37	6	169622310	169622310	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003247.2	-1	reviewed	p.T1085	0.569	15	0%	14	35.7%	45	0%	-	-	-	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl
TCTE3	6991	genome.wustl.edu	37	6	170144212	170144212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174910.1	-1	provisional	p.K93N	0.998	127	0%	105	34.3%	0	-	benign(0.244)	tolerated(0.23)	neutral(0.066)	NULL
DLL1	28514	genome.wustl.edu	37	6	170597456	170597456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005618.3	-1	reviewed	p.E181K	1.000	28	0%	21	33.3%	8	0%	possibly_damaging(0.942)	deleterious(0.04)	deleterious(0.736)	HMMPfam_DSL,HMMSmart_SM00051
FAM120B	84498	genome.wustl.edu	37	6	170626742	170626742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032448.1	+1	provisional	p.F88L	1.000	102	0%	88	30.7%	3	0%	possibly_damaging(0.789)	tolerated(0.1)	deleterious(0.583)	superfamily_PIN domain-like
ZFAND2A	90637	genome.wustl.edu	37	7	1197351	1197351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182491.2	-1	validated	p.D31Y	1.000	248	0%	227	18.1%	1	0%	possibly_damaging(0.658)	deleterious(0.02)	deleterious(0.616)	HMMPfam_zf-AN1,HMMSmart_ZnF_AN1
PSMG3	84262	genome.wustl.edu	37	7	1607463	1607463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134340.1	-1	validated	p.K80N	1.000	28	0%	73	19.2%	87	41.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF2372
SDK1	221935	genome.wustl.edu	37	7	3861158	3861158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152744.3	+1	validated	p.V264M	0.997	150	0%	150	31.3%	4	25%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RBAK	57786	genome.wustl.edu	37	7	5104931	5104931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021163.3	+1	reviewed	p.R615Q	0.994	197	0%	207	21.7%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RBAK	57786	genome.wustl.edu	37	7	5105069	5105069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021163.3	+1	reviewed	p.S661Y	0.988	234	0.4%	281	23.1%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RBAK	57786	genome.wustl.edu	37	7	5112841	5112841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000407184	+1	known	p.L242I	0.002	108	0%	132	30.3%	0	-	unknown(0)	-	-	NULL
WIPI2	26100	genome.wustl.edu	37	7	5257638	5257638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015610.3	+1	validated	p.S221L	1.000	142	0%	202	24.8%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EIF2AK1	27102	genome.wustl.edu	37	7	6068659	6068659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014413.3	-1	reviewed	p.R446I	1.000	108	0%	66	33.3%	18	50%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK1	27102	genome.wustl.edu	37	7	6077114	6077114	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014413.3	-1	reviewed	p.E425*	1.000	206	0%	176	27.8%	36	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF12	7559	genome.wustl.edu	37	7	6732198	6732198	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016265.3	-1	reviewed	p.T125	0.000	510	0.2%	490	31.6%	0	-	-	-	-	NULL
RSPH10B2	728194	genome.wustl.edu	37	7	6826526	6826526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099697.1	+1	provisional	p.F628L	1.000	390	0%	378	10.8%	0	-	benign(0.243)	tolerated(0.05)	neutral(0.370)	NULL
LOC100131257	100131257	genome.wustl.edu	37	7	7117935	7117935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001716696.1	-1	model	p.E423D	1.000	264	0%	132	54.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100131257	100131257	genome.wustl.edu	37	7	7118585	7118585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001716696.1	-1	model	p.E207*	1.000	260	0%	145	26.9%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100131257	100131257	genome.wustl.edu	37	7	7118740	7118740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001716696.1	-1	model	p.K155T	0.111	231	0%	94	36.2%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL28A1	340267	genome.wustl.edu	37	7	7415129	7415129	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037763.2	-1	validated	e30-1	1.000	96	0%	58	17.2%	0	-	-	-	-	-
COL28A1	340267	genome.wustl.edu	37	7	7476037	7476037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037763.2	-1	validated	p.R617*	1.000	302	0%	220	32.7%	0	-	-	-	-	NULL
MIOS	54468	genome.wustl.edu	37	7	7612769	7612769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019005.3	+1	validated	p.F221L	1.000	155	0.6%	181	23.2%	5	40%	benign(0.009)	tolerated(1)	neutral(0.001)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MIOS	54468	genome.wustl.edu	37	7	7625357	7625357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019005.3	+1	validated	p.R580Q	1.000	250	0%	185	26.5%	7	42.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
LOC340268	340268	genome.wustl.edu	37	7	9766392	9766392	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_041608.1	+1	model	NULL	1.000	70	0%	52	34.6%	0	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11091322	11091322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000303905	+1	known	p.R799Q	1.000	109	0%	89	22.5%	32	21.8%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11452292	11452292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015204.2	-1	validated	p.N1225D	1.000	86	0%	54	24.1%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ETV1	2115	genome.wustl.edu	37	7	13949261	13949261	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004956.4	-1	validated	p.F312	0.755	238	0.4%	184	16.8%	0	-	-	-	-	HMMPfam_ETS_PEA3_N
ETV1	2115	genome.wustl.edu	37	7	13971195	13971195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004956.4	-1	validated	p.A245V	0.999	63	1.6%	59	20.3%	2	50%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_ETS_PEA3_N
AGMO	392636	genome.wustl.edu	37	7	15599877	15599877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004320.1	-1	provisional	p.S49Y	1.000	191	0%	188	21.8%	0	-	benign(0.055)	tolerated(1)	neutral(0.004)	NULL
ANKMY2	57037	genome.wustl.edu	37	7	16649376	16649376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020319.2	-1	validated	p.R254Q	1.000	157	0%	121	27.3%	2	50%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
ANKMY2	57037	genome.wustl.edu	37	7	16664667	16664667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020319.2	-1	validated	p.A104V	1.000	263	0%	289	29.1%	0	-	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BZW2	28969	genome.wustl.edu	37	7	16736588	16736588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014038.2	+1	validated	p.T291A	1.000	223	0%	157	28.7%	49	34.6%	benign(0.023)	tolerated(0.39)	neutral(0.017)	superfamily_ARM repeat
AHR	196	genome.wustl.edu	37	7	17378911	17378911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001621.4	+1	validated	p.E488K	0.000	247	0%	174	34.5%	2	50%	benign(0.025)	tolerated(0.14)	neutral(0.251)	NULL
AHR	196	genome.wustl.edu	37	7	17379548	17379548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001621.4	+1	validated	p.F700C	0.961	228	0%	160	23.1%	8	37.5%	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
SNX13	23161	genome.wustl.edu	37	7	17836501	17836501	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015132.4	-1	reviewed	p.R859*	0.993	277	0%	301	23.6%	8	0%	-	-	-	HMMPfam_Nexin_C
SNX13	23161	genome.wustl.edu	37	7	17838724	17838724	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015132.4	-1	reviewed	p.F784	0.916	138	0%	156	29.5%	3	66.6%	-	-	-	NULL
PRPS1L1	221823	genome.wustl.edu	37	7	18066654	18066654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175886.2	-1	reviewed	p.G251V	1.000	356	0.3%	276	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PRTase-like
MACC1	346389	genome.wustl.edu	37	7	20198114	20198114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182762.3	-1	validated	p.F624L	0.001	381	0%	286	27.6%	1	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20682911	20682911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000404938	+1	known	p.R140Q	0.993	134	0%	75	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20782535	20782535	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178559.5	+1	validated	p.V575	0.016	121	0%	201	25.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20782555	20782555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178559.5	+1	validated	p.R582H	0.998	127	0%	219	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21630554	21630554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003777.3	+1	reviewed	p.E730*	1.000	36	0%	26	34.6%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH11	8701	genome.wustl.edu	37	7	21757454	21757454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003777.3	+1	reviewed	p.L2356I	1.000	144	0%	89	15.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21779217	21779217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003777.3	+1	reviewed	p.E2621*	1.000	161	0%	260	31.2%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21908581	21908581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003777.3	+1	reviewed	p.S3987Y	0.977	105	0%	94	25.5%	0	-	probably_damaging(0.956)	tolerated(0.89)	neutral(0.400)	HMMPfam_Dynein_heavy
RAPGEF5	9771	genome.wustl.edu	37	7	22186551	22186551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012294.3	-1	validated	p.M504I	1.000	189	0%	147	28.6%	0	-	benign(0.055)	deleterious(0.02)	neutral(0.387)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
FAM126A	84668	genome.wustl.edu	37	7	23015832	23015832	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000440481	-1	known	p.Q260*	1.000	222	0%	154	26.6%	0	-	possibly_damaging(0.948)	tolerated(0.17)	neutral(0.450)	HMMPfam_Hyccin
NUPL2	11097	genome.wustl.edu	37	7	23226687	23226687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007342.2	+1	validated	p.D123Y	1.000	118	0%	133	18.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRA2A	29896	genome.wustl.edu	37	7	23547114	23547114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013293.3	-1	reviewed	p.R189I	1.000	196	0%	222	22.1%	45	20%	benign(0.256)	deleterious(0)	deleterious(0.471)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
STK31	56164	genome.wustl.edu	37	7	23775232	23775232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031414.3	+1	reviewed	p.T187A	1.000	328	0%	296	13.9%	0	-	possibly_damaging(0.744)	deleterious(0.03)	deleterious(0.637)	NULL
MPP6	51678	genome.wustl.edu	37	7	24689307	24689307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016447.2	+1	provisional	p.S116Y	0.991	246	0%	203	24.6%	0	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	superfamily_PDZ domain-like
MPP6	51678	genome.wustl.edu	37	7	24718897	24718897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016447.2	+1	provisional	p.S421Y	1.000	499	0%	453	25.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
OSBPL3	26031	genome.wustl.edu	37	7	24849501	24849501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015550.2	-1	reviewed	p.H748N	1.000	156	0%	138	37.7%	14	35.7%	benign(0.348)	deleterious(0)	deleterious(0.554)	HMMPfam_Oxysterol_BP
NPVF	64111	genome.wustl.edu	37	7	25266386	25266386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022150.3	-1	validated	p.R133I	1.000	533	0%	453	26.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SKAP2	8935	genome.wustl.edu	37	7	26724404	26724404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003930.3	-1	reviewed	p.S313Y	0.999	165	0%	153	24.2%	0	-	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
HOXA2	3199	genome.wustl.edu	37	7	27141085	27141085	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006735.3	-1	reviewed	e2-1	1.000	42	0%	56	39.3%	2	100%	-	-	-	-
HOXA13	3209	genome.wustl.edu	37	7	27237955	27237955	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000522.4	-1	reviewed	p.T343	1.000	146	0%	128	29.7%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HIBADH	11112	genome.wustl.edu	37	7	27582704	27582704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152740.2	-1	validated	p.R167Q	0.998	324	0%	241	32.8%	34	70.5%	benign(0.014)	tolerated(0.75)	neutral(0.002)	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains
TAX1BP1	8887	genome.wustl.edu	37	7	27797748	27797748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006024.5	+1	validated	p.F87L	1.000	132	0%	124	23.4%	23	56.5%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_CALCOCO1
LOC402644	402644	genome.wustl.edu	37	7	28319076	28319076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001126493.1	-1	predicted	p.E81D	1.000	275	0%	242	14%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
CPVL	54504	genome.wustl.edu	37	7	29111401	29111401	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019029.2	-1	reviewed	p.F284L	0.000	232	0%	260	29.2%	7	14.2%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
PLEKHA8	84725	genome.wustl.edu	37	7	30118249	30118249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000436767	+1	known	p.A470V	0.997	132	0%	133	34.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_GLTP,superfamily_Glycolipid transfer protein GLTP
GARS	2617	genome.wustl.edu	37	7	30671863	30671863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002047.2	+1	reviewed	p.S635L	1.000	181	0%	186	29.6%	132	38.6%	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS
CRHR2	1395	genome.wustl.edu	37	7	30706880	30706880	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001883.3	-1	validated	p.I93	1.000	88	0%	105	23.8%	0	-	-	-	-	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like
FAM188B	84182	genome.wustl.edu	37	7	30915201	30915201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032222.2	+1	validated	p.L634R	0.310	229	0%	171	24.6%	16	37.5%	benign(0.156)	tolerated(0.4)	neutral(0.030)	NULL
GHRHR	2692	genome.wustl.edu	37	7	31018748	31018748	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000823.3	+1	reviewed	p.I387	0.226	35	0%	52	9.6%	0	-	-	-	-	superfamily_SSF81321
ADCYAP1R1	117	genome.wustl.edu	37	7	31121360	31121360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001118.3	+1	reviewed	p.D107N	0.977	127	0%	199	24.1%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like
NEUROD6	63974	genome.wustl.edu	37	7	31377934	31377934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022728.2	-1	provisional	p.D317N	1.000	203	0%	170	20%	0	-	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	NULL
NEUROD6	63974	genome.wustl.edu	37	7	31378321	31378321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022728.2	-1	provisional	p.F188V	1.000	183	0.5%	239	36.8%	0	-	possibly_damaging(0.454)	tolerated(0.08)	neutral(0.449)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31592650	31592650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194300.2	+1	validated	p.Q4H	0.081	82	0%	56	23.2%	0	-	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
PDE1C	5137	genome.wustl.edu	37	7	31855561	31855561	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005020.1	-1	provisional	p.S597*	0.779	300	0%	224	31.7%	0	-	-	-	-	NULL
PDE1C	5137	genome.wustl.edu	37	7	31864484	31864484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005020.1	-1	provisional	p.S468L	1.000	362	0%	399	25.1%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_SSF109604
PDE1C	5137	genome.wustl.edu	37	7	31877484	31877484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005020.1	-1	provisional	p.A361V	1.000	399	0%	287	26.8%	0	-	possibly_damaging(0.652)	tolerated(0.42)	neutral(0.243)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1C	5137	genome.wustl.edu	37	7	31890332	31890332	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005020.1	-1	provisional	p.I258	1.000	215	0%	215	28.4%	0	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1C	5137	genome.wustl.edu	37	7	32109974	32109974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005020.1	-1	provisional	p.F11C	1.000	110	0%	75	25.3%	0	-	possibly_damaging(0.835)	deleterious(0.01)	deleterious(0.724)	NULL
NT5C3	51251	genome.wustl.edu	37	7	33055445	33055445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002010.1	-1	reviewed	p.V249A	1.000	125	0%	125	28.8%	16	31.2%	benign(0.252)	tolerated(0.08)	neutral(0.326)	HMMPfam_UMPH-1,superfamily_HAD-like
RP9	6100	genome.wustl.edu	37	7	33136124	33136124	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203288.1	-1	reviewed	p.R150*	1.000	182	0%	195	23.1%	20	25%	-	-	-	NULL
BBS9	27241	genome.wustl.edu	37	7	33313469	33313469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198428.2	+1	reviewed	p.G306E	1.000	129	0%	128	25.8%	0	-	possibly_damaging(0.716)	tolerated(0.07)	deleterious(0.578)	NULL
BBS9	27241	genome.wustl.edu	37	7	33392474	33392474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198428.2	+1	reviewed	p.R514Q	1.000	163	0%	76	31.6%	2	0%	benign(0.025)	tolerated(0.42)	neutral(0.015)	NULL
BBS9	27241	genome.wustl.edu	37	7	33427631	33427631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198428.2	+1	reviewed	p.E664*	1.000	777	0%	628	29.3%	3	0%	-	-	-	NULL
BMPER	168667	genome.wustl.edu	37	7	34091518	34091518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133468.3	+1	validated	p.R241Q	1.000	199	0%	146	32.2%	0	-	benign(0.055)	tolerated(0.15)	neutral(0.244)	HMMPfam_VWC,HMMSmart_VWC
LOC100294084	100294084	genome.wustl.edu	37	7	35942715	35942715	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002344301.1	-1	model	e1+2	1.000	35	0%	32	28.1%	25	40%	benign(0.264)	tolerated(0.11)	neutral(0.299)	-
KIAA0895	23366	genome.wustl.edu	37	7	36373756	36373756	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100425.1	-1	validated	p.R339*	1.000	189	0%	212	26.4%	3	0%	-	-	-	NULL
AOAH	313	genome.wustl.edu	37	7	36552722	36552722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000431169	-1	known	p.F661L	0.003	89	0%	76	31.6%	12	0%	unknown(0)	-	-	NULL
AOAH	313	genome.wustl.edu	37	7	36634028	36634028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001637.3	-1	reviewed	p.F285L	0.867	144	0%	145	35.2%	3	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
AOAH	313	genome.wustl.edu	37	7	36657910	36657910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001637.3	-1	reviewed	p.F248L	1.000	70	0%	54	11.1%	1	0%	benign(0.195)	tolerated(0.53)	neutral(0.026)	NULL
TXNDC3	51314	genome.wustl.edu	37	7	37916545	37916545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016616.4	+1	reviewed	p.M310I	0.004	171	0%	119	24.4%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
SFRP4	6424	genome.wustl.edu	37	7	37951817	37951817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003014.3	-1	reviewed	p.R232Q	0.983	133	0%	105	21.9%	41	0%	benign(0.172)	deleterious(0.01)	neutral(0.421)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
SFRP4	6424	genome.wustl.edu	37	7	37953987	37953987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003014.3	-1	reviewed	p.R172C	1.000	158	0%	120	32.5%	35	0%	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	superfamily_TIMP_like
TRGV2	6974	genome.wustl.edu	37	7	38402741	38402741	+	Silent	SNP	C	C	T	rs79993290		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426402	-1	known	p.T26	0.000	450	0%	298	23.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
AMPH	273	genome.wustl.edu	37	7	38433678	38433678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001635.2	-1	reviewed	p.I512T	0.000	282	0%	229	24.9%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
AMPH	273	genome.wustl.edu	37	7	38574564	38574564	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001635.2	-1	reviewed	p.F39	1.000	103	0%	74	25.7%	0	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
FAM183B	340286	genome.wustl.edu	37	7	38725459	38725459	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000409072	-1	known	p.T49	0.117	150	0%	136	23.5%	0	-	-	-	-	NULL
POU6F2	11281	genome.wustl.edu	37	7	39504266	39504266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007252.3	+1	reviewed	p.S686Y	1.000	60	0%	45	28.9%	0	-	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	NULL
RALA	5898	genome.wustl.edu	37	7	39745749	39745749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005402.2	+1	reviewed	p.R176*	1.000	210	0.5%	109	34.9%	20	35%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK13	8621	genome.wustl.edu	37	7	40027248	40027248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003718.4	+1	reviewed	p.R421K	1.000	209	0%	179	29.1%	4	0%	unknown(0)	tolerated(0.08)	-	NULL
C7orf10	79783	genome.wustl.edu	37	7	40789051	40789051	+	Missense_Mutation	SNP	G	G	A	rs147837552	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024728.1	+1	provisional	p.V366I	0.000	187	0%	179	33%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	superfamily_CoA-Trfase_fam_III
GLI3	2737	genome.wustl.edu	37	7	42003980	42003980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000168.5	-1	reviewed	p.S1564Y	1.000	47	0%	42	21.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HECW1	23072	genome.wustl.edu	37	7	43581573	43581573	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000429529	+1	known	p.L132R	0.005	125	0%	139	16.5%	1	0%	-	-	-	HMMPfam_HECT,superfamily_Hect E3 ligase catalytic domain
HECW1	23072	genome.wustl.edu	37	7	43594343	43594343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015052.3	+1	validated	p.R1555W	0.984	27	0%	34	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
POLD2	5425	genome.wustl.edu	37	7	44155847	44155847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127218.1	-1	validated	p.P296T	1.000	12	0%	26	23.1%	304	39.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_E_B
NPC1L1	29881	genome.wustl.edu	37	7	44556408	44556408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013389.2	-1	reviewed	p.G1165D	1.000	29	0%	31	41.9%	5	0%	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	HMMPfam_Patched,superfamily_SSF82866
ADCY1	107	genome.wustl.edu	37	7	45724641	45724641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021116.2	+1	reviewed	p.I683L	1.000	143	0%	109	19.3%	1	0%	benign(0.01)	tolerated(0.35)	neutral(0.021)	NULL
TNS3	64759	genome.wustl.edu	37	7	47341790	47341790	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022748.10	-1	validated	p.E1180*	1.000	88	0%	56	23.2%	3	0%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TNS3	64759	genome.wustl.edu	37	7	47454762	47454762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022748.10	-1	validated	p.K172N	0.998	31	0%	22	22.7%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PKD1L1	168507	genome.wustl.edu	37	7	47882660	47882660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138295.2	-1	reviewed	p.A1782V	0.000	63	0%	39	15.4%	0	-	benign(0.039)	tolerated(0.44)	neutral(0.015)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47945502	47945502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138295.2	-1	reviewed	p.S487Y	0.002	109	0%	92	28.3%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
HUS1	3364	genome.wustl.edu	37	7	48008853	48008853	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004507.2	-1	reviewed	p.V201	0.582	83	0%	90	28.9%	3	33.3%	-	-	-	HMMPfam_Hus1
SUN3	256979	genome.wustl.edu	37	7	48046884	48046884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001030019.1	-1	validated	p.L124I	0.988	93	0%	94	17%	0	-	benign(0.409)	tolerated(0.13)	neutral(0.385)	NULL
C7orf57	136288	genome.wustl.edu	37	7	48081045	48081045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100159.1	+1	validated	p.G57V	0.004	77	0%	63	38.1%	0	-	benign(0.024)	tolerated(0.19)	neutral(0.051)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48237849	48237849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.R60Q	0.827	111	0%	64	25%	0	-	probably_damaging(0.997)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48269441	48269441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.D218N	0.957	623	0%	468	31.8%	0	-	probably_damaging(0.972)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48288926	48288926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.E661D	0.000	372	0%	267	14.6%	0	-	benign(0)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48314022	48314022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.E1587*	0.998	485	0%	277	28.9%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48314899	48314899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.R1879Q	0.000	238	0%	106	27.4%	0	-	benign(0.001)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48317704	48317704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.D2305Y	0.864	18	0%	10	50%	0	-	probably_damaging(1)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48567930	48567930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152701.3	+1	reviewed	p.R4781S	0.990	32	0%	30	16.7%	0	-	probably_damaging(0.999)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
FIGNL1	63979	genome.wustl.edu	37	7	50513011	50513011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042762.1	-1	validated	p.D659Y	1.000	82	0%	73	31.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
FIGNL1	63979	genome.wustl.edu	37	7	50513424	50513424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042762.1	-1	validated	p.K521T	1.000	208	0%	234	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDC	1644	genome.wustl.edu	37	7	50537844	50537844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000790.3	-1	reviewed	p.R356I	0.726	114	0%	105	30.5%	0	-	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
COBL	23242	genome.wustl.edu	37	7	51096911	51096911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015198.3	-1	validated	p.A628T	0.001	139	0%	101	22.8%	10	0%	benign(0.026)	tolerated(0.26)	neutral(0.035)	NULL
LOC441228	441228	genome.wustl.edu	37	7	56359131	56359131	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_016387.3	+1	model	NULL	0.181	297	0%	179	32.4%	0	-	-	-	-	-
ZNF479	90827	genome.wustl.edu	37	7	57187836	57187836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033273.1	-1	provisional	p.R429I	1.000	297	0%	343	29.4%	0	-	unknown(0)	tolerated(0.41)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF716	441234	genome.wustl.edu	37	7	57522844	57522844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342727.1	+1	model	p.K78Q	0.681	276	0%	385	27%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
ZNF716	441234	genome.wustl.edu	37	7	57528881	57528881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342727.1	+1	model	p.E238D	1.000	128	0%	118	24.6%	0	-	possibly_damaging(0.709)	tolerated(0.06)	deleterious(0.579)	superfamily_C2H2 and C2HC zinc fingers
ZNF716	441234	genome.wustl.edu	37	7	57529027	57529027	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000420713	+1	known	p.K287T	0.395	151	0%	188	23.4%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_C2H2 and C2HC zinc fingers
ZNF736	728927	genome.wustl.edu	37	7	63809071	63809071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000423484	+1	known	p.R277K	0.844	107	0%	137	19%	0	-	possibly_damaging(0.727)	tolerated(0.42)	neutral(0.279)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF736	728927	genome.wustl.edu	37	7	63809156	63809156	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000423484	+1	known	p.I305	0.691	88	0%	122	23.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF107	51427	genome.wustl.edu	37	7	64167902	64167902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013746.1	+1	validated	p.S407Y	1.000	193	0%	219	26%	0	-	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64168245	64168245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013746.1	+1	validated	p.E521D	1.000	184	0%	202	22.3%	0	-	unknown(0)	deleterious(0.03)	-	superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64168565	64168565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013746.1	+1	validated	p.R628I	0.962	194	0%	203	32%	1	0%	benign(0.023)	tolerated(0.19)	neutral(0.051)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF273	10793	genome.wustl.edu	37	7	64388164	64388164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021148.2	+1	reviewed	p.A153V	0.000	227	0%	273	34.1%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF273	10793	genome.wustl.edu	37	7	64388276	64388276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021148.2	+1	reviewed	p.F190L	0.000	259	0%	242	31%	0	-	benign(0.012)	tolerated(0.6)	neutral(0.005)	superfamily_C2H2 and C2HC zinc fingers
ZNF92	168374	genome.wustl.edu	37	7	64863892	64863892	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152626.2	+1	validated	p.E289*	0.909	273	0%	289	17.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SNORA22	677807	genome.wustl.edu	37	7	65220629	65220629	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_002961.1	+1	provisional	NULL	1.000	155	0%	164	29.3%	0	-	-	-	-	-
KCTD7	154881	genome.wustl.edu	37	7	66104044	66104044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153033.3	+1	validated	p.F232C	1.000	82	0%	113	22.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RABGEF1	27342	genome.wustl.edu	37	7	66270131	66270131	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014504.2	+1	validated	p.I275	0.997	224	0%	178	18%	4	50%	-	-	-	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
TYW1	55253	genome.wustl.edu	37	7	66648215	66648215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018264.2	+1	validated	p.E601K	1.000	36	0%	29	31%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Wyosine_form,superfamily_Radical SAM enzymes
LOC442572	442572	genome.wustl.edu	37	7	66751161	66751161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_499314.5	+1	model	p.N296D	0.002	356	0%	312	26.6%	0	-	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	69364421	69364421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015570.2	+1	validated	p.E153D	0.996	366	0%	318	33.3%	1	100%	benign(0.105)	tolerated(0.05)	neutral(0.353)	NULL
WBSCR17	64409	genome.wustl.edu	37	7	70886054	70886054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022479.1	+1	reviewed	p.D309Y	1.000	98	0%	64	31.2%	0	-	possibly_damaging(0.658)	deleterious(0.02)	deleterious(0.616)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
BAZ1B	9031	genome.wustl.edu	37	7	72877334	72877334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032408.3	-1	validated	p.R1056H	1.000	580	0%	545	27.7%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
WBSCR22	114049	genome.wustl.edu	37	7	73098222	73098222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000423166	+1	known	p.R49I	0.000	21	0%	26	34.6%	1	100%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
STX1A	6804	genome.wustl.edu	37	7	73118578	73118578	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004603.3	-1	reviewed	p.T122	0.962	19	0%	19	21.1%	5	40%	-	-	-	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
ELN	2006	genome.wustl.edu	37	7	73467563	73467563	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000501.2	+1	reviewed	p.G340	0.049	21	0%	26	23.1%	3	0%	-	-	-	NULL
GTF2I	2969	genome.wustl.edu	37	7	74159108	74159108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032999.2	+1	reviewed	p.G588*	1.000	119	0.8%	125	26.4%	15	6.6%	-	-	-	HMMPfam_GTF2I
GTF2IRD2	84163	genome.wustl.edu	37	7	74212066	74212066	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173537.2	-1	validated	p.I595	0.873	123	0.8%	93	9.7%	1	0%	-	-	-	NULL
MDH2	4191	genome.wustl.edu	37	7	75694217	75694217	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005918.2	+1	reviewed	p.F277	0.620	59	0%	46	26.1%	478	38.9%	-	-	-	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
SRCRB4D	136853	genome.wustl.edu	37	7	76019498	76019498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080744.1	-1	provisional	p.L536I	1.000	48	0%	56	30.4%	2	0%	possibly_damaging(0.912)	tolerated(0.35)	neutral(0.384)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
FGL2	10875	genome.wustl.edu	37	7	76826112	76826112	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006682.2	-1	reviewed	p.W268*	1.000	277	0%	178	25.3%	25	0%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGL2	10875	genome.wustl.edu	37	7	76826188	76826188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006682.2	-1	reviewed	p.D243G	1.000	258	0%	158	36.1%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGL2	10875	genome.wustl.edu	37	7	76826251	76826251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006682.2	-1	reviewed	p.R222I	1.000	238	0%	140	23.6%	15	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
CCDC146	57639	genome.wustl.edu	37	7	76909961	76909961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020879.2	+1	validated	p.R637Q	0.998	109	0%	78	29.5%	4	50%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
PTPN12	5782	genome.wustl.edu	37	7	77200461	77200461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002835.3	+1	reviewed	p.E56*	1.000	146	0%	113	28.3%	6	50%	-	-	-	HMMSmart_PTPc,superfamily_SSF52799
RSBN1L	222194	genome.wustl.edu	37	7	77408468	77408468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198467.2	+1	validated	p.D842N	1.000	100	0%	82	34.1%	0	-	possibly_damaging(0.798)	deleterious(0.01)	deleterious(0.706)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77649192	77649192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012301.3	-1	reviewed	p.P1270T	1.000	18	0%	23	26.1%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77973155	77973155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012301.3	-1	reviewed	p.L450M	1.000	168	0%	135	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77998505	77998505	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012301.3	-1	reviewed	p.I357	1.000	156	0%	124	20.2%	0	-	-	-	-	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
MAGI2	9863	genome.wustl.edu	37	7	78256493	78256493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012301.3	-1	reviewed	p.E161*	1.000	218	0%	139	10.8%	0	-	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEMA3C	10512	genome.wustl.edu	37	7	80378305	80378305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006379.2	-1	validated	p.K584R	1.000	186	0%	116	18.1%	3	0%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMSmart_IG,superfamily_SSF48726
CACNA2D1	781	genome.wustl.edu	37	7	81603842	81603842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000722.2	-1	reviewed	p.S661L	0.581	57	0%	44	40.9%	0	-	possibly_damaging(0.927)	deleterious(0.04)	deleterious(0.724)	NULL
PCLO	27445	genome.wustl.edu	37	7	82580231	82580231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.K3225E	1.000	168	0%	145	29.7%	0	-	probably_damaging(0.971)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82581337	82581337	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.R2978*	0.940	379	0%	296	26.4%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82582944	82582944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.K2442T	0.984	78	0%	79	30.4%	0	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583786	82583786	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.S2161	0.997	353	0%	375	27.5%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82586082	82586082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.S1396Y	0.165	224	0%	200	27%	0	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82595617	82595617	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.E1163*	0.984	238	0%	176	31.8%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82785442	82785442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033026.5	-1	validated	p.K172T	1.000	94	0%	73	20.5%	0	-	unknown(0)	-	-	NULL
GRM3	2913	genome.wustl.edu	37	7	86394478	86394478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000840.2	+1	reviewed	p.R6I	1.000	485	0%	472	14.2%	0	-	benign(0.086)	deleterious(0)	neutral(0.451)	NULL
GRM3	2913	genome.wustl.edu	37	7	86394817	86394817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000840.2	+1	reviewed	p.K119R	1.000	511	0%	547	30.7%	0	-	benign(0.014)	tolerated(0.2)	neutral(0.050)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KIAA1324L	222223	genome.wustl.edu	37	7	86544102	86544102	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000423294	-1	known	p.H517N	1.000	220	0%	117	25.6%	5	0%	-	-	-	superfamily_Growth factor receptor domain
KIAA1324L	222223	genome.wustl.edu	37	7	86547849	86547849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142749.2	-1	validated	p.S501Y	1.000	374	0%	273	28.9%	4	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_Growth factor receptor domain
DMTF1	9988	genome.wustl.edu	37	7	86803944	86803944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142327.1	+1	reviewed	p.E160*	1.000	78	0%	81	21%	0	-	-	-	-	NULL
CROT	54677	genome.wustl.edu	37	7	87011811	87011811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143935.1	+1	reviewed	p.T446K	0.995	281	0%	270	25.6%	0	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ABCB4	5244	genome.wustl.edu	37	7	87083907	87083907	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018849.2	-1	reviewed	p.V96	1.000	57	0%	50	34%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87160680	87160680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000927.3	-1	reviewed	p.G872V	1.000	561	0%	523	13.2%	2	0%	possibly_damaging(0.824)	tolerated(0.09)	deleterious(0.609)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87170704	87170704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000927.3	-1	reviewed	p.G763V	1.000	289	0.3%	215	26.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87174271	87174271	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000927.3	-1	reviewed	p.S644	0.000	162	0%	94	34%	0	-	-	-	-	NULL
ABCB1	5243	genome.wustl.edu	37	7	87180119	87180119	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000927.3	-1	reviewed	p.V345	0.999	326	0%	235	18.7%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87190589	87190589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000927.3	-1	reviewed	p.E273*	1.000	191	0%	137	21.9%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ADAM22	53616	genome.wustl.edu	37	7	87795236	87795236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021723.2	+1	reviewed	p.K722N	0.793	133	0%	99	36.4%	0	-	possibly_damaging(0.675)	tolerated(0.26)	neutral(0.273)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88964040	88964040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181646.2	+1	provisional	p.L582I	1.000	285	0%	210	30%	0	-	benign(0.026)	tolerated(0.35)	neutral(0.022)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88964209	88964209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181646.2	+1	provisional	p.K638T	0.038	259	0%	215	28.8%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965390	88965390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181646.2	+1	provisional	p.H1032Y	0.992	331	0%	278	26.3%	0	-	benign(0.378)	tolerated(0.1)	neutral(0.407)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965777	88965777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181646.2	+1	provisional	p.L1161I	0.999	241	0%	227	27.8%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89929239	89929239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039706.2	+1	validated	p.N639T	1.000	136	0%	144	27.8%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89929346	89929346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039706.2	+1	validated	p.K675E	1.000	139	0%	161	30.4%	0	-	probably_damaging(0.954)	tolerated(0.22)	neutral(0.440)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91603225	91603225	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005751.4	+1	reviewed	p.I83	0.001	181	0%	219	22.4%	0	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91624951	91624951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005751.4	+1	reviewed	p.H256R	0.996	103	0%	114	21.1%	0	-	possibly_damaging(0.925)	tolerated(0.2)	neutral(0.422)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91631176	91631176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005751.4	+1	reviewed	p.R649*	0.991	197	0%	212	23.6%	0	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91667961	91667961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005751.4	+1	reviewed	p.E1523K	1.000	234	0%	167	22.2%	0	-	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91687674	91687674	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000265737	+1	known	p.N64	0.999	76	0%	64	25%	0	-	-	-	-	NULL
CYP51A1	1595	genome.wustl.edu	37	7	91755742	91755742	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000786.3	-1	reviewed	e5-1	1.000	59	0%	84	10.7%	0	-	-	-	-	-
KRIT1	889	genome.wustl.edu	37	7	91852280	91852280	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004912.3	-1	reviewed	p.R423*	1.000	79	0%	61	26.2%	2	0%	-	-	-	HMMSmart_SM00295
KRIT1	889	genome.wustl.edu	37	7	91855908	91855908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004912.3	-1	reviewed	p.H360N	1.000	172	0%	160	36.2%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SAMD9	54809	genome.wustl.edu	37	7	92731623	92731623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017654.2	-1	validated	p.S1263Y	0.105	408	0%	349	30.7%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731758	92731758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017654.2	-1	validated	p.D1218A	0.090	386	0%	345	31.6%	0	-	benign(0.304)	tolerated(0.43)	neutral(0.108)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731862	92731862	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017654.2	-1	validated	p.P1183	0.479	462	0%	357	23.8%	2	0%	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732360	92732360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017654.2	-1	validated	p.F1017L	0.997	248	0%	168	33.9%	0	-	possibly_damaging(0.792)	tolerated(1)	neutral(0.297)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732492	92732492	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017654.2	-1	validated	p.I973	0.000	258	0%	231	29%	0	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763267	92763267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152703.2	-1	validated	p.K673T	0.019	553	0%	392	29.8%	2	50%	benign(0.013)	deleterious(0.03)	neutral(0.365)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92883211	92883211	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017667.2	+1	validated	p.A88	1.000	110	0%	84	28.6%	0	-	-	-	-	HMMPfam_DUF2450
CCDC132	55610	genome.wustl.edu	37	7	92983000	92983000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017667.2	+1	validated	p.R838C	1.000	406	0%	272	27.9%	1	100%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_DUF2451
CCDC132	55610	genome.wustl.edu	37	7	92983058	92983058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017667.2	+1	validated	p.R857Q	1.000	339	0.6%	231	24.2%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_DUF2451
CCDC132	55610	genome.wustl.edu	37	7	92985327	92985327	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017667.2	+1	validated	p.E904*	1.000	106	0%	78	29.5%	1	0%	-	-	-	HMMPfam_DUF2451
CALCR	799	genome.wustl.edu	37	7	93106921	93106921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001742.3	-1	reviewed	p.V89I	0.038	83	0%	98	16.3%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_HRM,HMMSmart_HormR,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF111418,superfamily_SSF81321
TFPI2	7980	genome.wustl.edu	37	7	93519623	93519623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006528.2	-1	provisional	p.A33T	0.000	89	0%	62	16.1%	7	57.1%	benign(0.005)	tolerated(0.63)	neutral(0.004)	superfamily_Prot_inh_Kunz-m
BET1	10282	genome.wustl.edu	37	7	93623697	93623697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005868.4	-1	reviewed	p.D68N	1.000	95	0%	85	32.9%	3	0%	possibly_damaging(0.663)	tolerated(0.16)	neutral(0.294)	HMMPfam_SNARE,HMMSmart_SM00397
COL1A2	1278	genome.wustl.edu	37	7	94053652	94053652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000089.3	+1	reviewed	p.P857L	1.000	120	0%	88	27.3%	219	0%	unknown(0)	tolerated(0.14)	-	HMMPfam_Collagen
COL1A2	1278	genome.wustl.edu	37	7	94057167	94057167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000089.3	+1	reviewed	p.L1166V	0.932	81	0%	62	21%	423	0%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_COLFI,HMMSmart_SM00038
COL1A2	1278	genome.wustl.edu	37	7	94057766	94057766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000089.3	+1	reviewed	p.E1230*	1.000	138	0%	107	25.2%	291	0%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
PEG10	23089	genome.wustl.edu	37	7	94292875	94292875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040152.1	+1	reviewed	p.E3K	0.053	9	0.000	18	0.389	1	0%	benign(0.048)	deleterious(0)	neutral(0.448)	NULL
PON1	5444	genome.wustl.edu	37	7	94947668	94947668	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000446.5	-1	reviewed	p.E38*	0.823	363	0%	226	23.5%	0	-	-	-	-	superfamily_Calcium-dependent phosphotriesterase
PDK4	5166	genome.wustl.edu	37	7	95223051	95223051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002612.3	-1	reviewed	p.F102V	1.000	79	0%	83	38.6%	1	0%	benign(0.186)	deleterious(0.04)	neutral(0.366)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
DYNC1I1	1780	genome.wustl.edu	37	7	95499225	95499225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004411.4	+1	validated	p.K152N	1.000	161	0%	149	22.1%	0	-	possibly_damaging(0.943)	tolerated(0.55)	neutral(0.395)	superfamily_WD40 repeat-like
SLC25A13	10165	genome.wustl.edu	37	7	95751055	95751055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014251.2	-1	reviewed	p.R585C	1.000	450	0%	386	31.6%	25	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
LMTK2	22853	genome.wustl.edu	37	7	97816246	97816246	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014916.3	+1	reviewed	p.E312*	1.000	279	0.4%	250	31.2%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BAIAP2L1	55971	genome.wustl.edu	37	7	97937198	97937198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018842.4	-1	reviewed	p.E322D	0.749	154	0%	141	31.9%	34	38.2%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
TMEM130	222865	genome.wustl.edu	37	7	98461022	98461022	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134450.1	-1	validated	p.G29	0.340	39	0%	35	31.4%	0	-	-	-	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98497370	98497370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003496.2	+1	validated	p.I260M	0.992	101	0%	87	24.1%	0	-	unknown(0)	tolerated(0.11)	-	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98546246	98546246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003496.2	+1	validated	p.T1551A	1.000	106	0%	126	30.2%	0	-	possibly_damaging(0.511)	deleterious(0.04)	deleterious(0.520)	superfamily_ARM repeat
SMURF1	57154	genome.wustl.edu	37	7	98638148	98638148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020429.1	-1	reviewed	p.R494Q	1.000	88	0%	65	26.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
BUD31	8896	genome.wustl.edu	37	7	99015051	99015051	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003910.3	+1	validated	e3-1	1.000	51	0%	47	10.6%	1	0%	-	-	-	-
ZNF394	84124	genome.wustl.edu	37	7	99091180	99091180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032164.2	-1	provisional	p.S553L	0.007	82	0%	128	19.5%	17	23.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZNF394	84124	genome.wustl.edu	37	7	99091730	99091730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032164.2	-1	provisional	p.R370C	0.001	197	0%	278	25.5%	9	22.2%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF655	79027	genome.wustl.edu	37	7	99170510	99170510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083956.1	+1	reviewed	p.R295I	1.000	108	0%	112	32.1%	0	-	possibly_damaging(0.546)	deleterious(0.01)	deleterious(0.591)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CYP3A4	1576	genome.wustl.edu	37	7	99364813	99364813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017460.3	-1	reviewed	p.N247H	0.000	168	0%	151	27.2%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_p450,superfamily_Cytochrome P450
OR2AE1	81392	genome.wustl.edu	37	7	99474603	99474603	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005276.1	-1	provisional	p.F18	0.114	167	0.6%	171	23.4%	0	-	-	-	-	superfamily_SSF81321
AP4M1	9179	genome.wustl.edu	37	7	99700369	99700369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004722.3	+1	reviewed	p.N73K	0.229	45	0%	34	14.7%	11	54.5%	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	HMMPfam_Clat_adaptor_s,superfamily_Longin_like
STAG3	10734	genome.wustl.edu	37	7	99794861	99794861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012447.2	+1	validated	p.D342N	1.000	996	0.1%	1177	21.2%	1	0%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_ARM repeat
ZCWPW1	55063	genome.wustl.edu	37	7	100013635	100013635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017984.3	-1	validated	p.Q238H	0.983	172	0%	200	26%	3	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ZCWPW1	55063	genome.wustl.edu	37	7	100017463	100017463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017984.3	-1	validated	p.Q24H	0.999	81	0%	102	37.3%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
FBXO24	26261	genome.wustl.edu	37	7	100190474	100190474	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033506.2	+1	reviewed	p.P209	0.993	45	0%	51	31.4%	1	0%	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100350208	100350208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003386.1	+1	reviewed	p.E827G	0.009	87	0%	122	28.7%	0	-	unknown(0)	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100479343	100479343	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015908.5	+1	validated	p.G105	0.997	52	0%	85	28.2%	32	46.8%	-	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100482401	100482401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015908.5	+1	validated	p.S328L	0.996	109	0%	77	16.9%	46	19.5%	benign(0.119)	tolerated(0.22)	neutral(0.052)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100550180	100550180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001725354.2	+1	model	p.T254N	0.007	400	0%	491	12.6%	0	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100551038	100551038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001725354.2	+1	model	p.S540Y	0.021	218	0%	419	12.6%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685505	100685505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040105.1	+1	provisional	p.R3603I	0.000	160	0%	163	33.7%	0	-	possibly_damaging(0.907)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100695124	100695124	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040105.1	+1	provisional	p.F4328	0.170	123	0%	205	25.9%	0	-	-	-	-	NULL
CLDN15	24146	genome.wustl.edu	37	7	100876140	100876140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014343.2	-1	reviewed	p.F146L	1.000	18	0%	32	28.1%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PMP22_Claudin
MYL10	93408	genome.wustl.edu	37	7	101259514	101259514	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138403.4	-1	validated	p.F173	0.158	24	0%	32	40.6%	0	-	-	-	-	HMMSmart_EFh,superfamily_SSF47473
FBXL13	222235	genome.wustl.edu	37	7	102517962	102517962	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145032.3	-1	validated	p.I529	0.007	189	0%	191	33%	0	-	-	-	-	HMMSmart_SM00367,superfamily_RNI-like
LRRC17	10234	genome.wustl.edu	37	7	102584980	102584980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031692.2	+1	validated	p.D418Y	1.000	241	0%	147	16.3%	1	0%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
PSMC2	5701	genome.wustl.edu	37	7	103007953	103007953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002803.2	+1	reviewed	p.G313A	1.000	220	0%	274	10.6%	133	15.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC26A5	375611	genome.wustl.edu	37	7	103018906	103018906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198999.2	-1	reviewed	p.T591N	0.009	274	0%	255	32.2%	0	-	benign(0.02)	tolerated(0.53)	neutral(0.009)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
RELN	5649	genome.wustl.edu	37	7	103151406	103151406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	p.F2722L	1.000	204	0%	145	17.2%	0	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	superfamily_Sialidase
RELN	5649	genome.wustl.edu	37	7	103159849	103159849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	p.L2595I	1.000	156	0%	117	29.9%	0	-	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	superfamily_Sialidase
RELN	5649	genome.wustl.edu	37	7	103183303	103183303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	p.F2182L	1.000	183	0%	160	27.5%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
RELN	5649	genome.wustl.edu	37	7	103191688	103191688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	p.F2043C	1.000	34	0%	47	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RELN	5649	genome.wustl.edu	37	7	103194177	103194177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	p.E1967*	1.000	117	0%	89	22.5%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103206669	103206669	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005045.3	-1	reviewed	e33+2	1.000	110	0%	81	29.6%	0	-	-	-	-	-
MLL5	55904	genome.wustl.edu	37	7	104717872	104717872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018682.3	+1	reviewed	p.F374L	1.000	261	0%	313	31%	3	33.3%	possibly_damaging(0.819)	tolerated(0.15)	deleterious(0.550)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL5	55904	genome.wustl.edu	37	7	104748330	104748330	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018682.3	+1	reviewed	p.I1142	0.867	156	0%	121	16.5%	6	33.3%	-	-	-	NULL
SRPK2	6733	genome.wustl.edu	37	7	104783684	104783684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182692.1	-1	validated	p.E303*	1.000	370	0%	338	29.3%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SRPK2	6733	genome.wustl.edu	37	7	104909273	104909273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182691.1	-1	validated	p.E6D	1.000	145	0%	151	25.8%	0	-	unknown(0)	tolerated(0.16)	-	NULL
PUS7	54517	genome.wustl.edu	37	7	105122872	105122872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019042.3	-1	validated	p.R312S	1.000	154	0%	195	24.1%	0	-	probably_damaging(0.985)	tolerated(0.46)	neutral(0.444)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
CDHR3	222256	genome.wustl.edu	37	7	105662697	105662697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152750.4	+1	validated	p.R627C	0.471	212	0%	252	36.1%	0	-	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_Cadherin,superfamily_Cadherin-like
CDHR3	222256	genome.wustl.edu	37	7	105672861	105672861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152750.4	+1	validated	p.F792L	1.000	46	0%	41	26.8%	0	-	probably_damaging(0.979)	tolerated(0.25)	neutral(0.459)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106526695	106526695	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002649.2	+1	reviewed	p.G996	0.976	153	0.7%	140	24.3%	1	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
SLC26A4	5172	genome.wustl.edu	37	7	107330579	107330579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000441.1	+1	reviewed	p.A387D	1.000	225	0%	271	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
LAMB1	3912	genome.wustl.edu	37	7	107569979	107569979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002291.2	-1	reviewed	p.Q1541H	1.000	172	0%	157	22.9%	123	25.2%	benign(0.054)	tolerated(0.22)	neutral(0.046)	superfamily_Prefoldin
LAMB1	3912	genome.wustl.edu	37	7	107621249	107621249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002291.2	-1	reviewed	p.L228F	1.000	85	0%	66	27.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_N,HMMSmart_SM00136
LAMB4	22798	genome.wustl.edu	37	7	107669500	107669500	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007356.2	-1	validated	p.R1712	0.019	180	0%	185	25.4%	0	-	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107692626	107692626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007356.2	-1	validated	p.A1278T	0.000	226	0%	186	32.3%	0	-	benign(0.045)	tolerated(0.57)	neutral(0.009)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107704399	107704399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007356.2	-1	validated	p.F956L	1.000	175	0%	129	27.1%	0	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107719945	107719945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000414450	-1	known	p.D589N	0.000	62	0%	46	26.1%	0	-	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107732842	107732842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007356.2	-1	validated	p.G497V	0.044	99	0%	124	29%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107743489	107743489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007356.2	-1	validated	p.P394S	0.789	44	0%	31	35.5%	0	-	probably_damaging(0.955)	tolerated(0.3)	neutral(0.427)	PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
NRCAM	4897	genome.wustl.edu	37	7	107790525	107790525	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037132.1	-1	reviewed	p.E1249*	1.000	437	0%	590	21.5%	1	0%	-	-	-	NULL
NRCAM	4897	genome.wustl.edu	37	7	107836304	107836304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037132.1	-1	reviewed	p.R455Q	1.000	69	0%	42	23.8%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_I-set,superfamily_Immunoglobulin
LRRN3	54674	genome.wustl.edu	37	7	110763006	110763006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099658.1	+1	validated	p.L60I	1.000	397	0%	349	29.5%	0	-	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	HMMSmart_SM00013,superfamily_L domain-like
LRRN3	54674	genome.wustl.edu	37	7	110763240	110763240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099658.1	+1	validated	p.E138K	0.987	252	0%	192	20.8%	0	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMSmart_SM00369,superfamily_L domain-like
LRRN3	54674	genome.wustl.edu	37	7	110763396	110763396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099658.1	+1	validated	p.L190I	1.000	263	0%	195	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
C7orf60	154743	genome.wustl.edu	37	7	112461939	112461939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152556.2	-1	validated	p.R360*	1.000	140	0%	104	20.2%	1	100%	-	-	-	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462322	112462322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152556.2	-1	validated	p.S232Y	1.000	100	0%	81	30.9%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113518642	113518642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002711.3	-1	reviewed	p.E835D	0.976	604	0.2%	537	29.2%	0	-	benign(0.059)	tolerated(0.11)	neutral(0.276)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113558745	113558745	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002711.3	-1	reviewed	p.E103*	1.000	190	0%	188	28.7%	0	-	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113558991	113558991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002711.3	-1	reviewed	p.L21V	0.948	205	0%	170	35.9%	0	-	benign(0.093)	tolerated(0.4)	neutral(0.023)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114066708	114066708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148898.2	+1	reviewed	p.E48*	1.000	187	0%	156	25%	0	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114329958	114329958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148898.2	+1	reviewed	p.P734S	1.000	159	0%	181	31.5%	0	-	unknown(0)	tolerated(0.6)	-	NULL
TES	26136	genome.wustl.edu	37	7	115890525	115890525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015641.2	+1	reviewed	p.S226Y	0.017	77	0%	49	22.4%	27	25.9%	benign(0.237)	deleterious(0.01)	neutral(0.429)	NULL
MET	4233	genome.wustl.edu	37	7	116398560	116398560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127500.1	+1	reviewed	p.S717*	0.102	373	0%	216	31.5%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
MET	4233	genome.wustl.edu	37	7	116411995	116411995	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127500.1	+1	reviewed	p.E1012*	1.000	160	0%	89	39.3%	0	-	-	-	-	NULL
CFTR	1080	genome.wustl.edu	37	7	117230480	117230480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000492.3	+1	reviewed	p.E585*	1.000	106	0%	91	31.9%	1	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CTTNBP2	83992	genome.wustl.edu	37	7	117374987	117374987	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033427.2	-1	reviewed	p.R1286*	0.102	83	0%	82	25.6%	1	0%	-	-	-	NULL
ANKRD7	56311	genome.wustl.edu	37	7	117879966	117879966	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000417525	+1	known	e6-1	0.190	151	0%	83	20.5%	0	-	-	-	-	-
KCND2	3751	genome.wustl.edu	37	7	119915653	119915653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012281.2	+1	reviewed	p.E323*	1.000	77	0%	62	11.3%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C7orf58	79974	genome.wustl.edu	37	7	120780957	120780957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024913.4	+1	validated	p.K592N	0.998	66	0%	78	26.9%	0	-	benign(0.018)	tolerated(0.37)	neutral(0.019)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120906385	120906385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024913.4	+1	validated	p.F805L	0.750	453	0%	555	33.9%	3	0%	benign(0.002)	tolerated(1)	-	NULL
WNT16	51384	genome.wustl.edu	37	7	120979235	120979235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_057168.1	+1	reviewed	p.R312C	1.000	117	0%	106	17%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
PTPRZ1	5803	genome.wustl.edu	37	7	121650423	121650423	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002851.2	+1	reviewed	p.A441	0.011	486	0%	481	32.2%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121653769	121653769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002851.2	+1	reviewed	p.D1557N	1.000	230	0%	172	23.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121671535	121671535	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002851.2	+1	reviewed	p.V1696	1.000	116	0%	110	30.9%	1	100%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
PTPRZ1	5803	genome.wustl.edu	37	7	121695024	121695024	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002851.2	+1	reviewed	p.N2137	1.000	292	0%	238	23.1%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS2	93664	genome.wustl.edu	37	7	122261767	122261767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017954.10	-1	reviewed	p.R291I	1.000	210	0%	154	24.7%	0	-	benign(0.278)	deleterious(0)	deleterious(0.475)	NULL
SLC13A1	6561	genome.wustl.edu	37	7	122759214	122759214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022444.3	-1	validated	p.S478Y	0.990	157	0%	112	31.2%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Na_sulph_symp
SLC13A1	6561	genome.wustl.edu	37	7	122839956	122839956	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022444.3	-1	validated	p.F15	0.001	186	0%	225	25.3%	0	-	-	-	-	HMMPfam_Na_sulph_symp
IQUB	154865	genome.wustl.edu	37	7	123109351	123109351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178827.4	-1	validated	p.N500H	0.549	174	0%	148	18.2%	0	-	possibly_damaging(0.508)	tolerated(0.09)	neutral(0.467)	NULL
IQUB	154865	genome.wustl.edu	37	7	123136912	123136912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178827.4	-1	validated	p.V358I	0.103	212	0%	174	25.9%	2	100%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
IQUB	154865	genome.wustl.edu	37	7	123143344	123143344	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178827.4	-1	validated	p.I202	0.576	469	0%	415	30.1%	0	-	-	-	-	HMMPfam_DUF2021,superfamily_Ubiquitin-like
ASB15	142685	genome.wustl.edu	37	7	123254568	123254568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080928.3	+1	validated	p.N4K	0.243	389	0%	292	25.3%	0	-	benign(0.013)	tolerated(0.29)	neutral(0.030)	NULL
ASB15	142685	genome.wustl.edu	37	7	123276904	123276904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080928.3	+1	validated	p.R546*	1.000	231	0%	195	22.6%	0	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
HYAL4	23553	genome.wustl.edu	37	7	123509122	123509122	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012269.2	+1	reviewed	p.W265*	0.062	200	0%	158	24.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123594358	123594358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003117.4	+1	reviewed	p.R245I	1.000	283	0%	385	30.9%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123595075	123595075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003117.4	+1	reviewed	p.E327*	1.000	338	0%	435	22.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
GPR37	2861	genome.wustl.edu	37	7	124387171	124387171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005302.2	-1	provisional	p.E417V	1.000	111	0%	142	15.5%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR37	2861	genome.wustl.edu	37	7	124387286	124387286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005302.2	-1	provisional	p.T379A	0.989	76	0%	122	31.1%	2	0%	possibly_damaging(0.702)	deleterious(0.05)	deleterious(0.598)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR37	2861	genome.wustl.edu	37	7	124404056	124404056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005302.2	-1	provisional	p.K325N	1.000	132	0%	121	37.2%	2	50%	possibly_damaging(0.541)	tolerated(0.07)	deleterious(0.502)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GRM8	2918	genome.wustl.edu	37	7	126542606	126542606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000845.2	-1	reviewed	p.K382N	1.000	160	0%	175	25.7%	0	-	benign(0.122)	tolerated(0.17)	neutral(0.069)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM8	2918	genome.wustl.edu	37	7	126542657	126542657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000845.2	-1	reviewed	p.E365D	1.000	174	0%	167	29.3%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM8	2918	genome.wustl.edu	37	7	126883168	126883168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000845.2	-1	reviewed	p.T31A	1.000	130	0%	92	32.6%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
PAX4	5078	genome.wustl.edu	37	7	127253874	127253874	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006193.2	-1	reviewed	p.H158	1.000	91	0%	107	23.4%	0	-	-	-	-	superfamily_Homeodomain_like
MIR129-1	406917	genome.wustl.edu	37	7	127847949	127847949	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384972	+1	known	NULL	1.000	20	0%	20	35%	0	-	-	-	-	-
IMPDH1	3614	genome.wustl.edu	37	7	128034511	128034511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000883.3	-1	reviewed	p.R565W	1.000	41	0%	21	38.1%	30	13.3%	possibly_damaging(0.923)	deleterious(0.03)	deleterious(0.737)	HMMPfam_IMPDH,superfamily_SSF51412
FAM71F1	84691	genome.wustl.edu	37	7	128355522	128355522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032599.2	+1	validated	p.K9N	0.949	98	0%	110	30.9%	0	-	benign(0.235)	deleterious(0)	neutral(0.468)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128445884	128445884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022742.3	+1	validated	p.R340W	0.939	23	0%	32	21.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128446426	128446426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022742.3	+1	validated	p.L409I	0.000	30	0%	23	21.7%	0	-	benign(0.01)	tolerated(0.55)	neutral(0.007)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128450379	128450379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022742.3	+1	validated	p.D663Y	0.000	77	0%	45	11.1%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
FLNC	2318	genome.wustl.edu	37	7	128486150	128486150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001458.4	+1	reviewed	p.K1299N	1.000	19	0%	41	22%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
IRF5	3663	genome.wustl.edu	37	7	128588361	128588361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098629.1	+1	reviewed	p.E426D	1.000	100	0%	92	26.1%	4	50%	benign(0.075)	deleterious(0)	neutral(0.450)	superfamily_SMAD_FHA,HMMPfam_IRF-3
AHCYL2	23382	genome.wustl.edu	37	7	129029014	129029014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015328.2	+1	validated	p.R198Q	1.000	217	0%	192	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AdoHcyase,superfamily_SSF52283
C7orf45	136263	genome.wustl.edu	37	7	129856292	129856292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145268.3	+1	validated	p.K239N	0.836	407	0%	412	20.9%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
CPA2	1358	genome.wustl.edu	37	7	129912925	129912925	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001869.2	+1	reviewed	p.E132*	0.990	101	0%	110	25.5%	0	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA1	1357	genome.wustl.edu	37	7	130021666	130021666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001868.2	+1	reviewed	p.D115N	0.006	28	0%	26	34.6%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	superfamily_SSF53187
CPA1	1357	genome.wustl.edu	37	7	130023570	130023570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001868.2	+1	reviewed	p.D211N	0.003	101	0%	105	23.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
TSGA13	114960	genome.wustl.edu	37	7	130357643	130357643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052933.2	-1	provisional	p.S154Y	0.000	106	0.9%	92	29.3%	0	-	probably_damaging(0.96)	tolerated(0.05)	deleterious(0.748)	NULL
MKLN1	4289	genome.wustl.edu	37	7	131130592	131130592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013255.4	+1	validated	p.F485L	1.000	273	0%	241	33.2%	1	0%	benign(0.054)	tolerated(0.25)	neutral(0.041)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
PLXNA4	91584	genome.wustl.edu	37	7	131825379	131825379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020911.1	-1	validated	p.S1806N	1.000	131	0%	120	32.5%	1	0%	benign(0.002)	tolerated(1)	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131866367	131866367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020911.1	-1	validated	p.L1089M	1.000	46	0%	65	26.2%	0	-	benign(0.115)	tolerated(0.17)	neutral(0.068)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PLXNA4	91584	genome.wustl.edu	37	7	132169656	132169656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181775.3	-1	validated	p.C496*	0.000	235	0%	277	23.8%	0	-	-	-	-	superfamily_Sema
LRGUK	136332	genome.wustl.edu	37	7	133824198	133824198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144648.1	+1	provisional	p.L139V	0.377	51	0%	71	22.5%	1	100%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	superfamily_SSF52058
LRGUK	136332	genome.wustl.edu	37	7	133876470	133876470	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144648.1	+1	provisional	p.I466	0.810	257	0%	305	31.8%	0	-	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_GuKc,superfamily_SSF52540
LRGUK	136332	genome.wustl.edu	37	7	133943054	133943054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144648.1	+1	provisional	p.F748L	0.000	152	0%	121	31.4%	1	100%	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
CALD1	800	genome.wustl.edu	37	7	134618525	134618525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033138.3	+1	reviewed	p.E335D	0.016	153	0%	173	27.2%	0	-	unknown(0)	tolerated(0.19)	-	HMMPfam_Caldesmon
CALD1	800	genome.wustl.edu	37	7	134618683	134618683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033138.3	+1	reviewed	p.R388H	0.000	340	0%	459	29.6%	0	-	unknown(0)	tolerated(0.1)	-	HMMPfam_Caldesmon
CALD1	800	genome.wustl.edu	37	7	134625842	134625842	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033138.3	+1	reviewed	e5-1	1.000	143	0%	101	26.7%	0	-	-	-	-	-
WDR91	29062	genome.wustl.edu	37	7	134878368	134878368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014149.3	-1	validated	p.K484N	1.000	28	0%	30	40%	18	38.8%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_WD40 repeat-like
CNOT4	4850	genome.wustl.edu	37	7	135048716	135048716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000262563	-1	known	p.S577Y	1.000	301	0%	331	31.4%	15	33.3%	possibly_damaging(0.528)	deleterious(0.01)	deleterious(0.584)	NULL
CNOT4	4850	genome.wustl.edu	37	7	135078728	135078728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013316.2	-1	validated	p.F520L	1.000	104	0%	87	17.2%	5	40%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
CNOT4	4850	genome.wustl.edu	37	7	135080559	135080559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013316.2	-1	validated	p.N316T	1.000	161	0%	148	29.7%	8	25%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
NUP205	23165	genome.wustl.edu	37	7	135258481	135258481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015135.2	+1	validated	p.R84Q	1.000	147	0%	172	34.3%	5	20%	probably_damaging(0.959)	tolerated(0.19)	neutral(0.452)	NULL
NUP205	23165	genome.wustl.edu	37	7	135261103	135261103	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015135.2	+1	validated	p.A143	0.624	309	0%	278	30.6%	1	0%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135301962	135301962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015135.2	+1	validated	p.K1219N	1.000	144	0%	105	23.8%	4	75%	benign(0.286)	tolerated(0.49)	neutral(0.098)	NULL
NUP205	23165	genome.wustl.edu	37	7	135304353	135304353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015135.2	+1	validated	p.E1382D	0.018	188	0%	137	29.9%	4	25%	benign(0.01)	tolerated(0.61)	neutral(0.005)	NULL
DGKI	9162	genome.wustl.edu	37	7	137262005	137262005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004717.2	-1	reviewed	p.R575I	1.000	35	0%	22	27.3%	0	-	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_DAGK_acc,HMMSmart_DAGKa
SVOPL	136306	genome.wustl.edu	37	7	138281185	138281185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001139456.1	-1	validated	p.E482K	1.000	99	1%	107	31.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_MFS general substrate transporter
TMEM213	155006	genome.wustl.edu	37	7	138487655	138487655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085429.1	+1	validated	p.F55L	1.000	49	0%	37	32.4%	0	-	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	NULL
ZC3HAV1	56829	genome.wustl.edu	37	7	138739960	138739960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020119.3	-1	reviewed	p.K726N	0.000	378	0%	362	29%	3	66.6%	benign(0.001)	tolerated(0.76)	neutral(0.001)	superfamily_ADP-ribosylation
UBN2	254048	genome.wustl.edu	37	7	138946316	138946316	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000483726	+1	known	p.S177L	0.999	155	0%	126	34.1%	0	-	-	-	-	NULL
UBN2	254048	genome.wustl.edu	37	7	138951117	138951117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173569.3	+1	validated	p.F395L	1.000	171	0%	109	30.3%	0	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
UBN2	254048	genome.wustl.edu	37	7	138969029	138969029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173569.3	+1	validated	p.L1043F	1.000	168	0%	211	25.6%	3	0%	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	NULL
TBXAS1	6916	genome.wustl.edu	37	7	139657497	139657497	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001061.4	+1	reviewed	p.L252	1.000	150	0%	86	32.6%	10	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
DENND2A	27147	genome.wustl.edu	37	7	140257964	140257964	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015689.3	-1	validated	p.F646	0.940	46	0%	39	28.2%	1	0%	-	-	-	HMMPfam_uDENN,HMMSmart_SM00800
MRPS33	51650	genome.wustl.edu	37	7	140706286	140706286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016071.3	-1	reviewed	p.R89S	1.000	317	0%	269	21.6%	70	32.8%	unknown(0)	deleterious(0)	-	HMMPfam_MRP-S33
WEE2	494551	genome.wustl.edu	37	7	141408668	141408668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105558.1	+1	validated	p.S37L	0.004	325	0%	538	37.5%	0	-	benign(0.056)	tolerated(0.47)	neutral(0.014)	NULL
TAS2R5	54429	genome.wustl.edu	37	7	141490218	141490218	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018980.2	+1	reviewed	p.I19	0.009	101	0%	94	27.7%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CLEC5A	23601	genome.wustl.edu	37	7	141629904	141629904	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013252.2	-1	reviewed	p.*189W	0.350	120	0%	77	32.5%	1	0%	-	-	-	NULL
PRSS58	136541	genome.wustl.edu	37	7	141957498	141957498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001317.2	-1	reviewed	p.L10F	0.011	359	0%	343	20.1%	0	-	possibly_damaging(0.938)	tolerated(0.12)	deleterious(0.644)	superfamily_Pept_Ser_Cys
PRSS58	136541	genome.wustl.edu	37	7	141957520	141957520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001317.2	-1	reviewed	p.F3C	0.020	341	0%	307	17.6%	0	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
TRBV2	28620	genome.wustl.edu	37	7	142001160	142001160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000455382	+1	known	p.F51L	0.004	55	0%	49	30.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV4-1	28617	genome.wustl.edu	37	7	142013310	142013310	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390357	+1	known	p.K55	0.345	299	0%	303	31.7%	0	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV6-1	28606	genome.wustl.edu	37	7	142028523	142028523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390353	+1	known	p.S86F	0.002	372	0%	358	27.1%	4	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_V-set,superfamily_SSF48726
TRBV6-9	28598	genome.wustl.edu	37	7	142104186	142104186	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390379	-1	known	p.F93	0.003	377	0%	457	31.3%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV6-7	28600	genome.wustl.edu	37	7	142143833	142143833	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390373	-1	known	p.R55*	0.292	475	0.2%	532	25.9%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV6-7	28600	genome.wustl.edu	37	7	142144064	142144064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390373	-1	known	p.C7	0.000	338	0%	388	20.1%	0	-	-	-	-	NULL
TRBV5-4	28611	genome.wustl.edu	37	7	142168576	142168576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000454561	-1	known	p.N49K	0.000	235	0%	258	32.9%	1	0%	benign(0)	tolerated(0.92)	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV9	28586	genome.wustl.edu	37	7	142239631	142239631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390363	-1	known	p.F83L	0.429	287	0%	258	27.5%	3	0%	possibly_damaging(0.466)	deleterious(0.01)	deleterious(0.558)	HMMPfam_V-set,superfamily_SSF48726
TRBV5-3	28612	genome.wustl.edu	37	7	142242398	142242398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390362	-1	known	p.E76*	0.029	118	0%	83	22.9%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV6-4	28603	genome.wustl.edu	37	7	142250815	142250815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390360	-1	known	p.E78*	0.023	210	0%	194	30.9%	2	0%	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV19	28568	genome.wustl.edu	37	7	142327008	142327008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390393	+1	known	p.K102N	0.010	365	0%	366	25.4%	4	0%	benign(0.327)	tolerated(0.32)	neutral(0.127)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV24-1	28563	genome.wustl.edu	37	7	142364644	142364644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390397	+1	known	p.F93L	0.067	331	0%	226	27%	1	0%	benign(0.356)	tolerated(0.16)	neutral(0.172)	HMMPfam_V-set,superfamily_SSF48726
EPHB6	2051	genome.wustl.edu	37	7	142566105	142566105	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004445.3	+1	reviewed	p.V675	1.000	63	1.6%	52	44.2%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRPV5	56302	genome.wustl.edu	37	7	142605914	142605914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019841.4	-1	reviewed	p.K652N	0.800	182	0%	232	23.3%	0	-	benign(0.015)	tolerated(0.2)	neutral(0.050)	NULL
TRPV5	56302	genome.wustl.edu	37	7	142627518	142627518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019841.4	-1	reviewed	p.R51Q	0.026	149	0%	132	31.8%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
OR9A2	135924	genome.wustl.edu	37	7	142723455	142723455	+	Silent	SNP	G	G	A	rs188754455	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001658.1	-1	provisional	p.Y255	0.016	163	0%	107	33.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR9A2	135924	genome.wustl.edu	37	7	142723714	142723714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001658.1	-1	provisional	p.S169*	0.001	356	0%	269	26%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR9A2	135924	genome.wustl.edu	37	7	142723968	142723968	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001658.1	-1	provisional	p.L84	0.903	240	0%	205	24.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6V1	346517	genome.wustl.edu	37	7	142749455	142749455	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001667.1	+1	provisional	p.Q6	0.001	371	0%	334	27.5%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
PIP	5304	genome.wustl.edu	37	7	142836228	142836228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002652.2	+1	validated	p.A88S	0.000	149	0%	149	20.8%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_SVA
TAS2R39	259285	genome.wustl.edu	37	7	142881147	142881147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176881.2	+1	provisional	p.F212L	0.002	379	0.3%	373	28.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R40	259286	genome.wustl.edu	37	7	142919522	142919522	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176882.1	+1	provisional	p.V117	1.000	525	0%	447	15%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R40	259286	genome.wustl.edu	37	7	142919762	142919762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176882.1	+1	provisional	p.F197L	0.000	417	0%	313	31.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CLCN1	1180	genome.wustl.edu	37	7	143028383	143028383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000083.2	+1	reviewed	p.K346N	1.000	144	0%	176	21%	0	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
TAS2R41	259287	genome.wustl.edu	37	7	143175837	143175837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176883.2	+1	provisional	p.R291Q	0.005	91	0%	76	40.8%	0	-	possibly_damaging(0.624)	tolerated(0.08)	deleterious(0.517)	HMMPfam_TAS2R,superfamily_SSF81321
OR2A25	392138	genome.wustl.edu	37	7	143771523	143771523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004488.1	+1	provisional	p.A71T	0.001	161	0%	225	30.2%	0	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR2A25	392138	genome.wustl.edu	37	7	143772001	143772001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004488.1	+1	provisional	p.G230E	0.000	370	0%	323	22.9%	0	-	benign(0.005)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_SSF81321
ARHGEF35	445328	genome.wustl.edu	37	7	143884379	143884379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003702.2	-1	validated	p.E366D	0.000	79	0%	94	25.5%	1	0%	benign(0.152)	tolerated(0.64)	neutral(0.017)	NULL
OR2A7	401427	genome.wustl.edu	37	7	143955912	143955912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005328.1	-1	provisional	p.K270N	0.944	663	0%	590	10.2%	0	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A1	346528	genome.wustl.edu	37	7	144015219	144015219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005287.1	+1	provisional	p.M1T	0.986	179	0%	193	16.1%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
TPK1	27010	genome.wustl.edu	37	7	144364917	144364917	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000378099	-1	known	p.S24	0.000	136	0%	129	27.9%	0	-	unknown(0)	-	-	superfamily_TPK_catalytic
CNTNAP2	26047	genome.wustl.edu	37	7	147092717	147092717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014141.5	+1	reviewed	p.M505I	0.999	267	0%	289	30.4%	0	-	benign(0.055)	tolerated(0.38)	neutral(0.021)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP2	26047	genome.wustl.edu	37	7	147600755	147600755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014141.5	+1	reviewed	p.E733K	0.914	30	0%	49	12.2%	0	-	benign(0.113)	tolerated(0.16)	neutral(0.068)	superfamily_Concanavalin A-like lectins/glucanases
CNTNAP2	26047	genome.wustl.edu	37	7	147914548	147914548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014141.5	+1	reviewed	p.A1060V	0.997	185	0%	179	23.5%	0	-	possibly_damaging(0.465)	deleterious(0.01)	deleterious(0.558)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP2	26047	genome.wustl.edu	37	7	147926866	147926866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014141.5	+1	reviewed	p.L1126I	0.447	397	0%	345	27%	0	-	benign(0.128)	tolerated(1)	neutral(0.011)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EZH2	2146	genome.wustl.edu	37	7	148504761	148504761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004456.3	-1	reviewed	p.E745K	1.000	16	0%	16	56.2%	35	77.1%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PDIA4	9601	genome.wustl.edu	37	7	148716136	148716136	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004911.4	-1	validated	p.K141	1.000	21	0%	28	39.3%	172	50.5%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ZNF425	155054	genome.wustl.edu	37	7	148802507	148802507	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001661.2	-1	validated	p.E152	0.003	157	0.6%	169	21.3%	0	-	-	-	-	NULL
LOC100288645	100288645	genome.wustl.edu	37	7	149152673	149152673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342805.1	+1	model	p.R177Q	0.109	60	0%	52	23.1%	3	66.6%	-	-	-	NULL
GIMAP7	168537	genome.wustl.edu	37	7	150217911	150217911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153236.3	+1	reviewed	p.M283I	0.000	289	0%	234	30.8%	0	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
GIMAP4	55303	genome.wustl.edu	37	7	150270001	150270001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018326.2	+1	reviewed	p.K281N	0.000	373	0%	352	24.1%	41	0%	possibly_damaging(0.545)	tolerated(0.34)	neutral(0.208)	NULL
GIMAP6	474344	genome.wustl.edu	37	7	150324701	150324701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000477013	-1	known	p.S87*	0.001	87	0%	71	36.6%	3	0%	-	-	-	NULL
GIMAP6	474344	genome.wustl.edu	37	7	150325616	150325616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000438845	-1	known	p.L94I	0.000	221	0%	193	33.2%	0	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
TMEM176A	55365	genome.wustl.edu	37	7	150499323	150499323	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018487.2	+1	validated	p.G65	0.001	47	0%	27	14.8%	35	0%	-	-	-	HMMPfam_LR8
ABP1	26	genome.wustl.edu	37	7	150553879	150553879	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001091.2	+1	reviewed	p.E107	0.004	87	0%	86	17.4%	0	-	-	-	-	HMMPfam_Cu_amine_oxidN2,superfamily_Amine oxidase N-terminal region
SMARCD3	6604	genome.wustl.edu	37	7	150939280	150939280	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000489503	-1	known	p.E84*	1.000	105	0%	73	32.9%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMARCD3	6604	genome.wustl.edu	37	7	150939679	150939679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003801.1	-1	reviewed	p.K156T	1.000	145	0%	171	34.5%	8	25%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151668056	151668056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145292.3	+1	validated	p.E92K	0.031	147	0%	106	27.4%	0	-	possibly_damaging(0.888)	tolerated(0.09)	deleterious(0.644)	superfamily_Nucleotide-diphospho-sugar transferases
GALNTL5	168391	genome.wustl.edu	37	7	151680198	151680198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145292.3	+1	validated	p.L166I	0.700	136	0%	96	24%	0	-	benign(0.098)	tolerated(0.16)	neutral(0.067)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNTL5	168391	genome.wustl.edu	37	7	151699934	151699934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145292.3	+1	validated	p.E265G	0.001	126	0%	121	26.4%	0	-	possibly_damaging(0.646)	tolerated(0.09)	deleterious(0.523)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151835975	151835975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170606.2	-1	reviewed	p.S4850L	1.000	162	0%	127	24.4%	13	23%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL3	58508	genome.wustl.edu	37	7	151859925	151859925	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360104	-1	known	p.T1085A	0.263	186	0%	173	31.2%	0	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151879228	151879228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170606.2	-1	reviewed	p.R1906Q	1.000	259	0%	238	29%	0	-	probably_damaging(1)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151879600	151879600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170606.2	-1	reviewed	p.Q1782P	1.000	515	0%	447	32.7%	0	-	probably_damaging(0.999)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151891161	151891161	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170606.2	-1	reviewed	p.A1531	0.000	236	0%	181	24.3%	0	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	152055755	152055755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_170606.2	-1	reviewed	p.R56Q	1.000	297	0%	282	25.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100288889	100288889	genome.wustl.edu	37	7	152841539	152841539	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342789.1	-1	model	p.N45	1.000	36	0%	22	45.5%	0	-	-	-	-	superfamily_Ubiquitin-like
DPP6	1804	genome.wustl.edu	37	7	154379433	154379433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000406326	+1	known	p.A234D	0.000	26	0%	19	31.6%	0	-	benign(0.359)	-	-	NULL
CNPY1	285888	genome.wustl.edu	37	7	155301793	155301793	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001103176.1	-1	validated	e1-1	1.000	38	0%	37	37.8%	0	-	-	-	-	-
SHH	6469	genome.wustl.edu	37	7	155604570	155604570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000193.2	-1	reviewed	p.D83N	1.000	116	0%	192	16.1%	3	66.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N
LMBR1	64327	genome.wustl.edu	37	7	156526939	156526939	+	Missense_Mutation	SNP	G	G	A	rs182641358	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022458.3	-1	reviewed	p.S257L	0.981	216	0%	220	23.6%	2	50%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_LMBR1
UBE3C	9690	genome.wustl.edu	37	7	156961791	156961791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014671.2	+1	validated	p.R57Q	1.000	142	0%	133	24.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015
WDR60	55112	genome.wustl.edu	37	7	158695262	158695262	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018051.4	+1	validated	p.E445*	0.070	137	0%	115	23.5%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR60	55112	genome.wustl.edu	37	7	158705694	158705694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018051.4	+1	validated	p.E537K	1.000	68	0%	74	16.2%	1	0%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_WD40 repeat-like
C8orf42	157695	genome.wustl.edu	37	8	442598	442598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175075.3	-1	validated	p.S120*	0.001	56	0%	53	26.4%	0	-	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1581034	1581034	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004745.3	+1	reviewed	p.C464	1.000	42	0%	48	22.9%	0	-	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1581154	1581154	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004745.3	+1	reviewed	p.D504	0.994	101	0%	82	20.7%	0	-	-	-	-	NULL
MYOM2	9172	genome.wustl.edu	37	8	2050459	2050459	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003970.2	+1	validated	p.V874	0.905	36	0%	42	28.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYOM2	9172	genome.wustl.edu	37	8	2065711	2065711	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003970.2	+1	validated	p.T1141	0.347	147	0%	134	29.1%	0	-	-	-	-	superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2077200	2077200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003970.2	+1	validated	p.M1260I	1.000	162	0%	133	20.3%	0	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2088763	2088763	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003970.2	+1	validated	p.F1306	0.009	231	0%	190	25.3%	0	-	-	-	-	superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	3046428	3046428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033225.5	-1	validated	p.T1836M	0.059	32	0%	21	28.6%	0	-	possibly_damaging(0.768)	tolerated(0.07)	deleterious(0.604)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3216752	3216752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033225.5	-1	validated	p.R1077S	1.000	114	0%	118	32.2%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3224730	3224730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033225.5	-1	validated	p.S981F	0.964	64	0%	66	22.7%	0	-	probably_damaging(0.961)	tolerated(0.27)	neutral(0.438)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FAM90A20P	728430	genome.wustl.edu	37	8	7155409	7155409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360191	+1	known	p.P420S	0.006	13	0%	16	37.5%	0	-	-	-	-	NULL
USP17L1P	401447	genome.wustl.edu	37	8	7190831	7190831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000382655	+1	known	p.S308F	1.000	109	0%	119	22.7%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF705G	100131980	genome.wustl.edu	37	8	7215658	7215658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400156	-1	known	p.R248I	0.967	844	0%	864	12.3%	0	-	possibly_damaging(0.695)	deleterious(0)	deleterious(0.694)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF705G	100131980	genome.wustl.edu	37	8	7215978	7215978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400156	-1	known	p.K141N	1.000	693	0%	764	13.7%	0	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	superfamily_SSF57667
TNKS	8658	genome.wustl.edu	37	8	9622299	9622299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003747.2	+1	validated	p.R1149Q	1.000	26	0%	56	26.8%	3	0%	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMPfam_PARP,superfamily_ADP-ribosylation
PRSS55	203074	genome.wustl.edu	37	8	10396104	10396104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198464.2	+1	validated	p.S287L	0.000	276	0%	261	30.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RP1L1	94137	genome.wustl.edu	37	8	10467725	10467725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178857.5	-1	validated	p.N1295H	0.001	99	0%	64	25%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PINX1	54984	genome.wustl.edu	37	8	10683727	10683727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017884.4	-1	provisional	p.S110Y	1.000	58	0%	45	28.9%	3	0%	benign(0.257)	tolerated(0.11)	neutral(0.298)	NULL
XKR6	286046	genome.wustl.edu	37	8	10756221	10756221	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000382461	-1	known	p.S166L	1.000	182	0%	206	24.3%	0	-	-	-	-	HMMPfam_XK-related
FDFT1	2222	genome.wustl.edu	37	8	11683712	11683712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004462.3	+1	reviewed	p.F230L	1.000	194	0%	160	31.9%	113	61%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SQS_PSY,superfamily_Terpenoid synthases,PatternScan_SQUALEN_PHYTOEN_SYN_2
USP17L7	392197	genome.wustl.edu	37	8	11991178	11991178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000416902	-1	known	p.S114F	0.921	81	0%	76	23.7%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
FAM86B1	85002	genome.wustl.edu	37	8	12040330	12040330	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_003494.1	-1	validated	NULL	0.010	31	0%	28	21.4%	5	20%	-	-	-	-
LONRF1	91694	genome.wustl.edu	37	8	12600699	12600699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152271.3	-1	provisional	p.L272I	1.000	126	0%	143	23.1%	1	0%	benign(0.099)	tolerated(0.08)	neutral(0.307)	HMMSmart_SM00028,superfamily_TPR-like
DLC1	10395	genome.wustl.edu	37	8	12952359	12952359	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182643.2	-1	reviewed	p.D1145	0.717	66	0%	85	40%	5	20%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
DLC1	10395	genome.wustl.edu	37	8	13259113	13259113	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182643.2	-1	reviewed	p.R347*	0.976	241	0%	229	35.8%	0	-	-	-	-	NULL
DLC1	10395	genome.wustl.edu	37	8	13356569	13356569	+	Missense_Mutation	SNP	G	G	A	rs191904737	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182643.2	-1	reviewed	p.R338C	1.000	173	0%	134	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MSR1	4481	genome.wustl.edu	37	8	16035480	16035480	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138715.2	-1	reviewed	p.H6	0.000	110	0%	116	25%	0	-	-	-	-	NULL
EFHA2	286097	genome.wustl.edu	37	8	16935364	16935364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181723.2	+1	validated	p.E214*	1.000	149	0%	108	27.8%	0	-	-	-	-	NULL
EFHA2	286097	genome.wustl.edu	37	8	16974065	16974065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181723.2	+1	validated	p.E494*	1.000	173	0%	144	32.6%	0	-	-	-	-	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
SLC7A2	6542	genome.wustl.edu	37	8	17409284	17409284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003046.5	+1	validated	p.R322W	1.000	192	0%	211	32.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_AA_permease
SLC7A2	6542	genome.wustl.edu	37	8	17412528	17412528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003046.5	+1	validated	p.L417I	1.000	150	0%	214	30.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AA_permease
PDGFRL	5157	genome.wustl.edu	37	8	17486034	17486034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006207.1	+1	reviewed	p.D182N	1.000	299	0%	305	23%	11	9%	benign(0.024)	deleterious(0.01)	neutral(0.407)	superfamily_Immunoglobulin
MTUS1	57509	genome.wustl.edu	37	8	17512100	17512100	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001924.2	-1	reviewed	p.L1062	0.536	82	0%	110	22.7%	0	-	-	-	-	NULL
MTUS1	57509	genome.wustl.edu	37	8	17554820	17554820	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020749.4	-1	reviewed	p.R23*	1.000	310	0%	260	27.3%	0	-	-	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17813006	17813006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006197.3	+1	validated	p.R439K	1.000	43	0%	53	34%	6	0%	possibly_damaging(0.799)	tolerated(0.12)	deleterious(0.561)	NULL
PCM1	5108	genome.wustl.edu	37	8	17814826	17814826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006197.3	+1	validated	p.Q567P	1.000	317	0%	280	33.2%	1	0%	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
PCM1	5108	genome.wustl.edu	37	8	17867069	17867069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006197.3	+1	validated	p.K1659T	1.000	68	0%	53	32.1%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCM1	5108	genome.wustl.edu	37	8	17869185	17869185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006197.3	+1	validated	p.K1787T	1.000	135	0%	109	24.8%	12	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19315133	19315133	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_024040.1	-1	validated	NULL	0.001	46	0%	23	52.2%	0	-	-	-	-	-
SLC18A1	6570	genome.wustl.edu	37	8	20022588	20022588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135691.2	-1	validated	p.L297I	1.000	98	0%	71	21.1%	0	-	possibly_damaging(0.927)	tolerated(0.19)	neutral(0.424)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ATP6V1B2	526	genome.wustl.edu	37	8	20077845	20077845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001693.3	+1	reviewed	p.E490*	1.000	137	0%	154	33.8%	16	25%	-	-	-	HMMPfam_ATP-synt_ab_C
XPO7	23039	genome.wustl.edu	37	8	21844746	21844746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100161.1	+1	validated	p.R567C	1.000	247	0%	221	27.1%	4	25%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	superfamily_ARM repeat
LGI3	203190	genome.wustl.edu	37	8	22012907	22012907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139278.2	-1	validated	p.F92L	1.000	51	0%	38	23.7%	0	-	benign(0.005)	tolerated(1)	-	superfamily_SSF52058
PPP3CC	5533	genome.wustl.edu	37	8	22333038	22333038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005605.3	+1	provisional	p.F91L	1.000	109	0%	89	33.7%	5	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
SORBS3	10174	genome.wustl.edu	37	8	22423995	22423995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005775.4	+1	validated	p.R363Q	0.958	43	0%	45	35.6%	21	52.3%	probably_damaging(0.989)	tolerated(0.09)	deleterious(0.736)	superfamily_SH3-domain
RHOBTB2	23221	genome.wustl.edu	37	8	22863573	22863573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015178.2	+1	validated	p.A133S	1.000	318	0%	296	25.7%	0	-	benign(0.215)	tolerated(0.09)	neutral(0.318)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
LOXL2	4017	genome.wustl.edu	37	8	23198574	23198574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002318.2	-1	reviewed	p.K225T	0.993	78	0%	96	22.9%	24	16.6%	benign(0.005)	tolerated(0.48)	neutral(0.011)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
ADAMDEC1	27299	genome.wustl.edu	37	8	24249807	24249807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014479.3	+1	validated	p.L41F	0.007	159	0%	150	32.7%	0	-	possibly_damaging(0.868)	tolerated(0.05)	deleterious(0.682)	HMMPfam_Pep_M12B_propep
ADAMDEC1	27299	genome.wustl.edu	37	8	24253271	24253271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014479.3	+1	validated	p.K134N	0.576	91	0%	86	27.9%	4	0%	benign(0.025)	tolerated(0.06)	neutral(0.324)	HMMPfam_Pep_M12B_propep
ADAMDEC1	27299	genome.wustl.edu	37	8	24254847	24254847	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014479.3	+1	validated	p.E169*	0.944	312	0.3%	267	19.9%	1	0%	-	-	-	HMMPfam_Pep_M12B_propep
ADAM7	8756	genome.wustl.edu	37	8	24333986	24333986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000380789	+1	known	p.R225Q	0.989	294	0%	274	32.1%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM7	8756	genome.wustl.edu	37	8	24339715	24339715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000380789	+1	known	p.D256Y	1.000	130	0%	129	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM7	8756	genome.wustl.edu	37	8	24350084	24350084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000380789	+1	known	p.E543D	0.000	144	0%	108	32.4%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM7	8756	genome.wustl.edu	37	8	24359044	24359044	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000380789	+1	known	p.Q721	0.002	400	0%	435	27.4%	0	-	-	-	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24773148	24773148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005382.2	+1	reviewed	p.R371W	1.000	71	0%	70	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
NEFM	4741	genome.wustl.edu	37	8	24775344	24775344	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005382.2	+1	reviewed	p.S659*	0.014	277	0%	215	25.6%	0	-	-	-	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24775396	24775396	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005382.2	+1	reviewed	p.E676	0.002	213	0.5%	203	33%	1	0%	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25154087	25154087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024940.6	+1	validated	p.E177K	0.898	47	0%	49	26.5%	1	0%	benign(0)	tolerated(0.92)	-	NULL
SCARA3	51435	genome.wustl.edu	37	8	27516012	27516012	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016240.2	+1	reviewed	e5-1	1.000	308	0%	313	28.1%	0	-	-	-	-	-
ELP3	55140	genome.wustl.edu	37	8	27970632	27970632	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018091.5	+1	validated	p.R187*	1.000	139	0%	118	34.7%	4	50%	-	-	-	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
ZNF395	55893	genome.wustl.edu	37	8	28217123	28217123	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018660.2	-1	validated	p.I153	0.453	56	0%	55	36.4%	2	0%	-	-	-	NULL
FBXO16	157574	genome.wustl.edu	37	8	28314306	28314306	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172366.2	-1	reviewed	p.E162*	1.000	236	0%	253	24.9%	3	0%	-	-	-	superfamily_SSF81383
INTS9	55756	genome.wustl.edu	37	8	28704310	28704310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018250.3	-1	reviewed	p.S72L	1.000	215	0%	240	21.2%	3	33.3%	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
PPP2CB	5516	genome.wustl.edu	37	8	30643751	30643751	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009552.1	-1	reviewed	p.*310Y	0.998	13	0%	15	40%	74	55.4%	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30694711	30694711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.S2647Y	0.996	225	0%	219	26.9%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TEX15	56154	genome.wustl.edu	37	8	30694818	30694818	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.Y2611	0.000	222	0%	216	20.4%	0	-	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30700118	30700118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.L2139R	0.261	163	0%	160	23.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TEX15	56154	genome.wustl.edu	37	8	30700559	30700559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.I1992R	0.998	132	0%	157	24.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
TEX15	56154	genome.wustl.edu	37	8	30701727	30701727	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.E1603*	0.026	188	0%	194	22.2%	0	-	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30702230	30702230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.S1435F	0.000	147	0%	132	38.6%	0	-	possibly_damaging(0.706)	tolerated(0.06)	deleterious(0.577)	NULL
TEX15	56154	genome.wustl.edu	37	8	30702827	30702827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.S1236Y	0.023	93	0%	109	29.4%	0	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	NULL
TEX15	56154	genome.wustl.edu	37	8	30703414	30703414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031271.3	-1	validated	p.F1040L	0.636	279	0%	244	29.5%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
WRN	7486	genome.wustl.edu	37	8	30938507	30938507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000553.4	+1	reviewed	p.D322Y	0.021	420	0%	265	23.4%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
LOC100289349	100289349	genome.wustl.edu	37	8	33380783	33380783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342830.1	+1	model	p.W34R	0.095	80	0%	73	20.5%	0	-	-	-	-	HMMPfam_Thymosin,HMMSmart_SM00152
ENSG00000188512	0	genome.wustl.edu	37	8	33827291	33827291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000341045	-1	known	p.L36I	1.000	79	0%	106	33%	0	-	-	-	-	HMMPfam_Cytochrom_C,superfamily_Cytochrome_c
KCNU1	157855	genome.wustl.edu	37	8	36790511	36790511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031836.2	+1	validated	p.R1002Q	0.934	18	0%	18	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38146081	38146081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023034.1	-1	reviewed	p.R1142I	1.000	101	0%	152	24.3%	3	66.6%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_SET,HMMSmart_SM00570,superfamily_SET domain
LETM2	137994	genome.wustl.edu	37	8	38264492	38264492	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144652.1	+1	provisional	p.L321*	0.004	110	0%	96	35.4%	8	37.5%	-	-	-	NULL
FGFR1	2260	genome.wustl.edu	37	8	38279438	38279438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023110.2	-1	reviewed	p.D320N	1.000	95	0%	65	23.1%	12	33.3%	benign(0.004)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ADAM9	8754	genome.wustl.edu	37	8	38880697	38880697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003816.2	+1	reviewed	p.R256Q	1.000	213	0%	186	25.8%	5	20%	possibly_damaging(0.551)	deleterious(0.04)	deleterious(0.536)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM2	2515	genome.wustl.edu	37	8	39626991	39626991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001464.3	-1	reviewed	p.D378Y	0.677	94	0%	89	23.6%	0	-	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	NULL
SFRP1	6422	genome.wustl.edu	37	8	41122988	41122988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003012.4	-1	reviewed	p.E215*	1.000	79	0%	90	14.4%	0	-	-	-	-	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
SFRP1	6422	genome.wustl.edu	37	8	41160986	41160986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003012.4	-1	reviewed	p.E206K	1.000	31	0%	35	34.3%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
ANK1	286	genome.wustl.edu	37	8	41566326	41566326	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142446.1	-1	reviewed	p.S689	0.390	61	0%	76	28.9%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK1	286	genome.wustl.edu	37	8	41753901	41753901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142446.1	-1	reviewed	p.R33I	1.000	27	0%	18	22.2%	0	-	probably_damaging(0.991)	tolerated(0.19)	deleterious(0.493)	superfamily_ANK
KAT6A	7994	genome.wustl.edu	37	8	41789756	41789756	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099412.1	-1	validated	p.K1994	1.000	129	0%	124	29.8%	13	76.9%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41790368	41790368	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099412.1	-1	validated	p.G1790	0.950	184	0%	174	29.9%	10	40%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791296	41791296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099412.1	-1	validated	p.S1481N	1.000	180	0%	185	21.1%	19	21%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KAT6A	7994	genome.wustl.edu	37	8	41798752	41798752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099412.1	-1	validated	p.D883Y	0.999	206	0.5%	196	28.6%	0	-	unknown(0)	deleterious(0)	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41801350	41801350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099412.1	-1	validated	p.K715T	0.993	259	0%	234	23.5%	1	0%	unknown(0)	tolerated(0.32)	-	HMMPfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase
POLB	5423	genome.wustl.edu	37	8	42213036	42213036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002690.1	+1	provisional	p.L125I	1.000	113	0%	139	12.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_POLXc,HMMPfam_DNA_pol_lambd_f,superfamily_DNA_pol_lambd_fingers_domain
VDAC3	7419	genome.wustl.edu	37	8	42257213	42257213	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135694.1	+1	validated	p.P106	0.997	69	0%	53	28.3%	38	42.1%	-	-	-	HMMPfam_Porin_3
SLC20A2	6575	genome.wustl.edu	37	8	42323432	42323432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006749.3	-1	provisional	p.S98F	1.000	111	0%	91	11%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PHO4
CHRNB3	1142	genome.wustl.edu	37	8	42586826	42586826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000749.3	+1	validated	p.E126K	1.000	55	0%	76	44.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNA6	8973	genome.wustl.edu	37	8	42611545	42611545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004198.2	-1	provisional	p.S266L	1.000	172	0%	169	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HOOK3	84376	genome.wustl.edu	37	8	42865471	42865471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032410.3	+1	validated	p.E588*	1.000	29	0%	26	30.8%	0	-	-	-	-	HMMPfam_HOOK
HOOK3	84376	genome.wustl.edu	37	8	42868201	42868201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032410.3	+1	validated	p.R616H	1.000	58	0%	102	27.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HOOK
HGSNAT	138050	genome.wustl.edu	37	8	43027473	43027473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152419.2	+1	reviewed	p.V255A	1.000	91	0%	91	22%	2	50%	possibly_damaging(0.799)	deleterious(0.02)	deleterious(0.684)	HMMPfam_DUF2261
POTEA	340441	genome.wustl.edu	37	8	43197366	43197366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005365.2	+1	validated	p.D419Y	0.972	185	0%	189	27.5%	0	-	-	-	-	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885794	47885794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000399732	-1	known	p.D147N	1.000	77	0%	69	43.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIAA0146	23514	genome.wustl.edu	37	8	48508400	48508400	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080394.1	+1	predicted	p.S375	0.955	120	0%	113	32.7%	5	40%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48706963	48706963	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314191	-1	known	p.E3519*	1.000	64	0%	88	36.4%	6	0%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48752648	48752648	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081640.1	-1	validated	p.S2461L	0.722	21	0%	27	33.3%	0	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48817474	48817474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314191	-1	known	p.K999N	1.000	216	0%	188	32.4%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	superfamily_ARM repeat
EFCAB1	79645	genome.wustl.edu	37	8	49643199	49643199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024593.3	-1	validated	p.F73L	1.000	13	0%	17	35.3%	0	-	possibly_damaging(0.728)	deleterious(0.01)	deleterious(0.671)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
SNAI2	6591	genome.wustl.edu	37	8	49832997	49832997	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003068.3	-1	reviewed	p.I28S	1.000	143	0%	86	37.2%	6	0%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
C8orf22	492307	genome.wustl.edu	37	8	49986636	49986636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007176.3	+1	validated	p.V25A	0.045	225	0%	112	32.1%	0	-	benign(0.055)	tolerated(1)	neutral(0.004)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52366144	52366144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144651.4	-1	validated	p.R395Q	0.015	107	0%	115	37.4%	0	-	benign(0.003)	tolerated(0.59)	neutral(0.004)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PXDNL	137902	genome.wustl.edu	37	8	52384855	52384855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144651.4	-1	validated	p.R235Q	0.827	211	0%	202	26.7%	0	-	possibly_damaging(0.827)	tolerated(0.66)	neutral(0.317)	HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like
ST18	9705	genome.wustl.edu	37	8	53062489	53062489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014682.2	-1	validated	p.K619E	1.000	265	0%	241	32%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_MYT1
ST18	9705	genome.wustl.edu	37	8	53071652	53071652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014682.2	-1	validated	p.P538T	1.000	93	0%	72	22.2%	0	-	possibly_damaging(0.747)	tolerated(0.08)	deleterious(0.574)	HMMPfam_MYT1
ST18	9705	genome.wustl.edu	37	8	53084363	53084363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014682.2	-1	validated	p.F353C	0.997	156	0%	114	28.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53586653	53586653	+	Nonsense_Mutation	SNP	C	C	A	rs140425456	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014781.4	-1	reviewed	p.E252*	0.023	382	0%	286	28.7%	0	-	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55538370	55538370	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006269.1	+1	reviewed	p.D643V	0.941	151	0%	92	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RP1	6101	genome.wustl.edu	37	8	55541000	55541000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006269.1	+1	reviewed	p.M1520L	0.002	227	0%	99	21.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
RP1	6101	genome.wustl.edu	37	8	55542599	55542599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006269.1	+1	reviewed	p.D2053Y	0.000	282	0%	168	27.4%	1	0%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
FAM110B	90362	genome.wustl.edu	37	8	59059594	59059594	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147189.2	+1	validated	p.R269*	1.000	153	0%	163	14.7%	0	-	-	-	-	NULL
UBXN2B	137886	genome.wustl.edu	37	8	59352199	59352199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077619.1	+1	validated	p.P181S	1.000	346	0%	271	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SEP,HMMSmart_SEP,superfamily_SEP
CYP7A1	1581	genome.wustl.edu	37	8	59404246	59404246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000780.3	-1	reviewed	p.M435V	1.000	153	0%	170	14.1%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_p450,superfamily_Cytochrome_P450
NSMAF	8439	genome.wustl.edu	37	8	59514643	59514643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144772.1	-1	reviewed	p.N398H	1.000	247	0%	182	21.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Beach,superfamily_BEACH domain
TOX	9760	genome.wustl.edu	37	8	59720795	59720795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014729.2	-1	reviewed	p.I476L	1.000	162	0%	149	28.9%	14	0%	possibly_damaging(0.63)	tolerated(0.14)	deleterious(0.470)	NULL
TOX	9760	genome.wustl.edu	37	8	59750747	59750747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014729.2	-1	reviewed	p.R273C	1.000	259	0%	309	23.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CHD7	55636	genome.wustl.edu	37	8	61728999	61728999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017780.2	+1	reviewed	p.R851I	1.000	62	0%	39	20.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
CLVS1	157807	genome.wustl.edu	37	8	62212786	62212786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173519.2	+1	validated	p.D134Y	1.000	189	0%	208	19.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
CLVS1	157807	genome.wustl.edu	37	8	62289216	62289216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173519.2	+1	validated	p.I170L	1.000	137	0%	151	28.5%	0	-	benign(0.005)	tolerated(0.48)	neutral(0.011)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
CLVS1	157807	genome.wustl.edu	37	8	62370995	62370995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173519.2	+1	validated	p.D291N	1.000	121	0%	128	28.9%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	superfamily_CRAL/TRIO domain
TTPA	7274	genome.wustl.edu	37	8	63978614	63978614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000370.3	-1	reviewed	p.R134Q	1.000	117	0%	85	30.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
TTPA	7274	genome.wustl.edu	37	8	63985567	63985567	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000370.3	-1	reviewed	p.L95	0.882	167	0.6%	186	26.9%	0	-	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
MTFR1	9650	genome.wustl.edu	37	8	66619478	66619478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014637.3	+1	reviewed	p.R251W	1.000	174	0%	113	28.3%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF729
TRIM55	84675	genome.wustl.edu	37	8	67062673	67062673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_184085.1	+1	reviewed	p.K319N	1.000	246	0%	191	27.2%	0	-	benign(0.104)	deleterious(0.01)	neutral(0.414)	NULL
SGK3	23678	genome.wustl.edu	37	8	67759560	67759560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033578.1	+1	reviewed	p.R403*	1.000	243	0%	238	28.2%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PPP1R42	286187	genome.wustl.edu	37	8	67922994	67922994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013626.2	-1	provisional	p.L170I	1.000	86	0%	84	10.7%	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_SSF52058
ARFGEF1	10565	genome.wustl.edu	37	8	68111197	68111197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006421.3	-1	reviewed	p.E1841G	1.000	227	0%	146	28.8%	10	50%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68139733	68139733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006421.3	-1	reviewed	p.R1231I	1.000	287	0%	199	14.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF1981,superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68170044	68170044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006421.3	-1	reviewed	p.L817I	1.000	281	0%	248	21.8%	0	-	benign(0.175)	tolerated(0.4)	neutral(0.032)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
PREX2	80243	genome.wustl.edu	37	8	68930093	68930093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024870.2	+1	validated	p.R52G	1.000	90	0%	56	25%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
PREX2	80243	genome.wustl.edu	37	8	68934337	68934337	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024870.2	+1	validated	p.E135*	1.000	131	0%	107	27.1%	1	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
PREX2	80243	genome.wustl.edu	37	8	69033159	69033159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024870.2	+1	validated	p.F1200S	1.000	124	0%	101	29.7%	3	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
SULF1	23213	genome.wustl.edu	37	8	70476349	70476349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128204.1	+1	validated	p.L47I	0.998	260	0%	262	30.9%	12	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PRDM14	63978	genome.wustl.edu	37	8	70971059	70971059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024504.2	-1	validated	p.R401I	0.997	109	0%	85	24.7%	0	-	possibly_damaging(0.857)	deleterious(0.02)	deleterious(0.714)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
PRDM14	63978	genome.wustl.edu	37	8	70980717	70980717	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024504.2	-1	validated	p.E251*	1.000	78	0%	54	27.8%	0	-	-	-	-	HMMSmart_SET
NCOA2	10499	genome.wustl.edu	37	8	71039222	71039222	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006540.2	-1	validated	p.R1248*	0.999	31	0%	32	46.9%	1	0%	-	-	-	NULL
NCOA2	10499	genome.wustl.edu	37	8	71068244	71068244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006540.2	-1	validated	p.T786A	1.000	122	0%	75	30.7%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
LACTB2	51110	genome.wustl.edu	37	8	71553205	71553205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016027.2	-1	validated	p.L225F	1.000	102	0%	63	23.8%	3	0%	benign(0.029)	tolerated(0.13)	neutral(0.254)	superfamily_SSF56281
TRPA1	8989	genome.wustl.edu	37	8	72945968	72945968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007332.2	-1	reviewed	p.L927M	0.001	155	0%	162	38.3%	0	-	possibly_damaging(0.901)	tolerated(0.19)	neutral(0.406)	HMMPfam_Ion_trans
TRPA1	8989	genome.wustl.edu	37	8	72970031	72970031	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007332.2	-1	reviewed	p.I338	0.105	138	0%	124	22.6%	0	-	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
KCNB2	9312	genome.wustl.edu	37	8	73480362	73480362	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004770.2	+1	reviewed	p.I131	1.000	448	0%	416	20.7%	0	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNB2	9312	genome.wustl.edu	37	8	73848928	73848928	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004770.2	+1	reviewed	p.N446	0.602	254	0%	198	26.3%	0	-	-	-	-	NULL
STAU2	27067	genome.wustl.edu	37	8	74464404	74464404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014393.2	-1	reviewed	p.S426L	0.767	321	0%	242	24.8%	3	66.6%	benign(0.032)	tolerated(0.09)	neutral(0.298)	NULL
UBE2W	55284	genome.wustl.edu	37	8	74717942	74717942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001481.1	-1	validated	p.S140Y	1.000	43	0%	27	29.6%	0	-	benign(0.186)	deleterious(0.04)	neutral(0.366)	HMMPfam_UQ_con,HMMSmart_SM00212
JPH1	56704	genome.wustl.edu	37	8	75227565	75227565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020647.2	-1	reviewed	p.R224C	0.910	47	0%	39	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77761247	77761247	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000399468	+1	known	p.E1176	0.989	21	0%	27	44.4%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77763860	77763860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024721.4	+1	validated	p.K1523T	1.000	269	0%	229	36.7%	0	-	benign(0.076)	-	-	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77764742	77764742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024721.4	+1	validated	p.S1817Y	0.366	111	0%	96	24%	0	-	benign(0.017)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77765615	77765615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024721.4	+1	validated	p.S2108Y	1.000	234	0%	140	17.1%	0	-	probably_damaging(0.959)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZFHX4	79776	genome.wustl.edu	37	8	77767933	77767933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024721.4	+1	validated	p.R2881W	0.980	97	0%	68	25%	0	-	probably_damaging(1)	-	-	superfamily_Homeodomain-like
ZFHX4	79776	genome.wustl.edu	37	8	77776709	77776709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024721.4	+1	validated	p.D3542Y	1.000	145	0%	120	28.3%	0	-	probably_damaging(1)	-	-	NULL
PEX2	5828	genome.wustl.edu	37	8	77896041	77896041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000318.2	-1	reviewed	p.R125Q	0.998	268	0%	253	16.6%	22	31.8%	possibly_damaging(0.788)	tolerated(0.61)	neutral(0.299)	HMMPfam_Pex2_Pex12
STMN2	11075	genome.wustl.edu	37	8	80567253	80567253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007029.2	+1	provisional	p.R146C	1.000	212	0%	173	17.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Stathmin,superfamily_Stathmin
ZBTB10	65986	genome.wustl.edu	37	8	81399981	81399981	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105539.1	+1	validated	p.V312	1.000	67	0%	58	36.2%	0	-	-	-	-	NULL
ZBTB10	65986	genome.wustl.edu	37	8	81412507	81412507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105539.1	+1	validated	p.F584C	1.000	35	0%	61	52.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PMP2	5375	genome.wustl.edu	37	8	82357140	82357140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002677.3	-1	validated	p.R53Q	1.000	145	0%	94	33%	0	-	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMPfam_Lipocalin,superfamily_Lipocalins
RALYL	138046	genome.wustl.edu	37	8	85799868	85799868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100391.1	+1	validated	p.L252I	0.962	268	0.4%	253	35.6%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
RALYL	138046	genome.wustl.edu	37	8	85799948	85799948	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100391.1	+1	validated	p.A278	0.013	325	0%	323	28.2%	0	-	-	-	-	NULL
E2F5	1875	genome.wustl.edu	37	8	86121394	86121394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001951.3	+1	reviewed	p.K211N	1.000	157	0%	131	27.5%	3	66.6%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
CA1	759	genome.wustl.edu	37	8	86245846	86245846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128829.2	-1	reviewed	p.H120N	1.000	166	0%	122	26.2%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1
WWP1	11059	genome.wustl.edu	37	8	87460401	87460401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007013.3	+1	validated	p.D675N	1.000	202	0%	173	29.5%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
CNGB3	54714	genome.wustl.edu	37	8	87591451	87591451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019098.4	-1	reviewed	p.R604Q	1.000	344	0%	353	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_SM00100,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like
CNBD1	168975	genome.wustl.edu	37	8	88365863	88365863	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173538.2	+1	provisional	e10-1	1.000	132	0%	63	23.8%	0	-	-	-	-	-
DCAF4L2	138009	genome.wustl.edu	37	8	88885279	88885279	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152418.3	-1	validated	p.Q307	0.997	140	0%	101	17.8%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
MMP16	4325	genome.wustl.edu	37	8	89081622	89081622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022564.3	-1	reviewed	p.E451*	0.063	79	0%	64	25%	0	-	-	-	-	NULL
RIPK2	8767	genome.wustl.edu	37	8	90777608	90777608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003821.5	+1	reviewed	p.R123C	1.000	303	0.3%	276	33.3%	36	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DECR1	1666	genome.wustl.edu	37	8	91029411	91029411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001359.1	+1	reviewed	p.F43L	1.000	349	0%	192	28.6%	16	50%	benign(0.351)	deleterious(0.02)	deleterious(0.494)	NULL
DECR1	1666	genome.wustl.edu	37	8	91064096	91064096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001359.1	+1	reviewed	p.E327*	1.000	293	0%	304	25.3%	103	17.4%	-	-	-	NULL
CALB1	793	genome.wustl.edu	37	8	91072441	91072441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004929.2	-1	reviewed	p.R249Q	1.000	447	0%	364	24.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TMEM67	91147	genome.wustl.edu	37	8	94805468	94805468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153704.5	+1	reviewed	p.L540I	1.000	130	0%	131	22.1%	3	66.6%	possibly_damaging(0.866)	tolerated(0.27)	neutral(0.369)	HMMPfam_Meckelin
CDH17	1015	genome.wustl.edu	37	8	95172211	95172211	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144663.1	-1	reviewed	p.V513	0.735	285	0%	240	25.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH17	1015	genome.wustl.edu	37	8	95183119	95183119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144663.1	-1	reviewed	p.Y293C	0.999	223	0%	210	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KIAA1429	25962	genome.wustl.edu	37	8	95531223	95531223	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015496.3	-1	validated	p.E835*	1.000	341	0%	260	32.3%	0	-	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95541372	95541372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015496.3	-1	validated	p.R269Q	0.448	116	0%	103	40.8%	1	100%	benign(0.023)	tolerated(0.37)	neutral(0.020)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95674532	95674532	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017697.3	+1	validated	p.R175*	0.049	34	0%	27	14.8%	5	20%	-	-	-	NULL
ESRP1	54845	genome.wustl.edu	37	8	95709137	95709137	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017697.3	+1	validated	p.E677*	1.000	35	0%	29	17.2%	6	16.6%	-	-	-	NULL
INTS8	55656	genome.wustl.edu	37	8	95853794	95853794	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017864.2	+1	provisional	p.E365*	1.000	392	0%	415	28.2%	2	0%	-	-	-	NULL
INTS8	55656	genome.wustl.edu	37	8	95885606	95885606	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017864.2	+1	provisional	p.T846	1.000	515	0%	528	28.2%	14	71.4%	-	-	-	NULL
CCNE2	9134	genome.wustl.edu	37	8	95900249	95900249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_057749.1	-1	reviewed	p.F169C	1.000	81	0%	66	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00385,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like
PLEKHF2	79666	genome.wustl.edu	37	8	96166863	96166863	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024613.3	+1	validated	p.S197	0.965	146	0%	193	26.9%	4	50%	-	-	-	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
C8orf37	157657	genome.wustl.edu	37	8	96264437	96264437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177965.2	-1	predicted	p.S150L	0.981	215	0%	264	22%	1	0%	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98289621	98289621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033512.2	-1	validated	p.E151G	0.053	54	0%	86	20.9%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
MATN2	4147	genome.wustl.edu	37	8	98943199	98943199	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002380.3	+1	reviewed	p.K54T	1.000	71	0%	45	17.8%	1	100%	possibly_damaging(0.925)	tolerated(0.14)	deleterious(0.623)	superfamily_vWA-like
MATN2	4147	genome.wustl.edu	37	8	98943356	98943356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002380.3	+1	reviewed	p.K106N	1.000	78	0%	53	30.2%	0	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
MATN2	4147	genome.wustl.edu	37	8	98943544	98943544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002380.3	+1	reviewed	p.T169I	1.000	55	0%	46	21.7%	1	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
OSR2	116039	genome.wustl.edu	37	8	99961141	99961141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000457907	+1	known	p.K108N	1.000	38	0%	39	35.9%	1	0%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100147278	100147278	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017890.3	+1	reviewed	p.Q446	1.000	209	0%	182	28.6%	0	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100168838	100168838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017890.3	+1	reviewed	p.R692Q	1.000	205	0%	230	22.2%	3	33.3%	benign(0.001)	tolerated(0.88)	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100523719	100523719	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017890.3	+1	reviewed	p.E1563*	1.000	94	0%	81	16%	0	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100866032	100866032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017890.3	+1	reviewed	p.Y3497C	1.000	351	0%	297	30.6%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101153676	101153676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029860.2	-1	validated	p.S269I	1.000	73	0%	60	21.7%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101157338	101157338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029860.2	-1	validated	p.R9I	0.035	35	0%	27	37%	0	-	benign(0.076)	-	-	NULL
RNF19A	25897	genome.wustl.edu	37	8	101271192	101271192	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015435.3	-1	reviewed	p.T703	0.998	470	0%	452	30.5%	25	32%	-	-	-	NULL
SNX31	169166	genome.wustl.edu	37	8	101625266	101625266	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152628.3	-1	validated	p.F160	0.982	134	0%	104	33.7%	0	-	-	-	-	NULL
SNX31	169166	genome.wustl.edu	37	8	101629858	101629858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152628.3	-1	validated	p.R141I	1.000	167	0%	142	22.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
GRHL2	79977	genome.wustl.edu	37	8	102676699	102676699	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024915.3	+1	reviewed	p.G572	0.998	160	0%	114	28.1%	5	60%	-	-	-	NULL
RRM2B	50484	genome.wustl.edu	37	8	103220448	103220448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015713.4	-1	reviewed	p.F323L	1.000	176	0%	167	21%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBR5	51366	genome.wustl.edu	37	8	103326050	103326050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015902.4	-1	reviewed	p.K663N	1.000	193	0%	153	25.5%	0	-	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
AZIN1	51582	genome.wustl.edu	37	8	103841572	103841572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015878.4	-1	reviewed	p.S388Y	0.991	305	0%	271	33.6%	18	50%	benign(0.397)	deleterious(0)	deleterious(0.572)	HMMPfam_Orn_DAP_Arg_deC,superfamily_Racem_decarbox_C
ATP6V1C1	528	genome.wustl.edu	37	8	104065051	104065051	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001695.4	+1	reviewed	e5+1	1.000	175	0%	118	28%	0	-	-	-	-	-
FZD6	8323	genome.wustl.edu	37	8	104337567	104337567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003506.3	+1	reviewed	p.K411N	1.000	436	0%	425	28.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Frizzled
DCAF13	25879	genome.wustl.edu	37	8	104439410	104439410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015420.6	+1	validated	p.R337I	1.000	92	0%	97	27.8%	20	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_WD40,superfamily_WD40_like
DCAF13	25879	genome.wustl.edu	37	8	104439415	104439415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015420.6	+1	validated	p.N339D	0.956	96	0%	100	32%	20	55%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMSmart_WD40,superfamily_WD40_like
RIMS2	9699	genome.wustl.edu	37	8	104831791	104831791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014677.3	+1	validated	p.G19V	1.000	302	0%	173	26.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104973333	104973333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100117.1	+1	validated	p.D914E	0.998	337	0%	191	22.5%	0	-	probably_damaging(0.992)	tolerated(0.73)	neutral(0.449)	NULL
LRP12	29967	genome.wustl.edu	37	8	105509965	105509965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013437.4	-1	reviewed	p.S272Y	1.000	151	0%	106	13.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZFPM2	23414	genome.wustl.edu	37	8	106813606	106813606	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012082.3	+1	reviewed	p.A432	0.067	164	0%	164	27.4%	0	-	-	-	-	NULL
OXR1	55074	genome.wustl.edu	37	8	107695484	107695484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018002.2	+1	validated	p.E121K	1.000	168	0%	158	20.3%	2	0%	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMSmart_SM00257,HMMPfam_LysM,superfamily_LysM domain
RSPO2	340419	genome.wustl.edu	37	8	109094818	109094818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178565.4	-1	validated	p.D17N	1.000	53	0%	54	22.2%	0	-	unknown(0)	deleterious(0)	-	superfamily_Growth factor receptor domain
PKHD1L1	93035	genome.wustl.edu	37	8	110451283	110451283	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177531.4	+1	validated	p.I1306	0.005	261	0%	191	21.5%	0	-	-	-	-	HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110527528	110527528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_177531.4	+1	validated	p.Y3895H	0.000	48	0%	47	10.6%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
SYBU	55638	genome.wustl.edu	37	8	110587998	110587998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099744.1	-1	validated	p.E377K	1.000	149	0%	147	27.2%	4	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113277652	113277652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.P3226T	1.000	336	0%	279	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113318305	113318305	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.E2668*	1.000	272	0%	161	26.7%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113318415	113318415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.S2631F	1.000	164	0%	101	16.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113353884	113353884	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.T2158	0.984	87	0%	67	37.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113599317	113599317	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.L1288*	1.000	157	0%	113	26.5%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113668437	113668437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.L984I	1.000	127	0%	82	18.3%	0	-	benign(0.124)	tolerated(0.07)	neutral(0.329)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113694724	113694724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.C875F	1.000	320	0.3%	216	31.5%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113812499	113812499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.T622A	0.997	165	0%	175	21.7%	0	-	unknown(0)	tolerated(0.14)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113966930	113966930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198123.1	-1	validated	p.S468I	1.000	61	0%	31	41.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
EIF3H	8667	genome.wustl.edu	37	8	117671056	117671056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003756.2	-1	validated	p.I151M	1.000	221	0%	257	27.6%	141	22.6%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00232
SLC30A8	169026	genome.wustl.edu	37	8	118174074	118174074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173851.2	+1	reviewed	p.D224N	1.000	126	0%	100	21%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_efflux
EXT1	2131	genome.wustl.edu	37	8	118834745	118834745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000127.2	-1	reviewed	p.S459*	1.000	221	0%	227	26%	5	20%	-	-	-	NULL
TNFRSF11B	4982	genome.wustl.edu	37	8	119938903	119938903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002546.3	-1	reviewed	p.T216M	0.918	149	0%	97	33%	0	-	possibly_damaging(0.944)	deleterious(0.02)	deleterious(0.772)	superfamily_DEATH domain
COLEC10	10584	genome.wustl.edu	37	8	120118073	120118073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006438.3	+1	reviewed	p.F159L	1.000	134	0%	142	30.3%	0	-	benign(0.008)	tolerated(0.08)	neutral(0.300)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
ENPP2	5168	genome.wustl.edu	37	8	120608142	120608142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006209.3	-1	reviewed	p.R358I	1.000	149	0%	117	34.2%	0	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120612951	120612951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006209.3	-1	reviewed	p.F313L	0.890	169	0%	139	16.5%	0	-	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120631537	120631537	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006209.3	-1	reviewed	p.S142	0.318	143	0%	87	37.9%	0	-	-	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201
ENPP2	5168	genome.wustl.edu	37	8	120633724	120633724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006209.3	-1	reviewed	p.E110*	1.000	172	0%	133	20.3%	0	-	-	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201,superfamily_Somatomedin B domain
TAF2	6873	genome.wustl.edu	37	8	120831664	120831664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003184.3	-1	reviewed	p.R74Q	1.000	386	0%	390	25.4%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_Peptidase_M1,superfamily_SSF63737
TAF2	6873	genome.wustl.edu	37	8	120844763	120844763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003184.3	-1	reviewed	p.K14N	1.000	120	0%	116	31.9%	0	-	unknown(0)	deleterious(0)	-	superfamily_SSF63737
HAS2	3037	genome.wustl.edu	37	8	122641563	122641563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005328.2	-1	reviewed	p.F6L	1.000	165	0%	166	31.9%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124346503	124346503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014109.3	-1	reviewed	p.E1091*	1.000	89	0%	125	28.8%	0	-	-	-	-	HMMSmart_SM00297,superfamily_Bromodomain
ATAD2	29028	genome.wustl.edu	37	8	124357185	124357185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014109.3	-1	reviewed	p.S886*	0.997	224	0%	170	34.1%	3	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MIR548D1	693130	genome.wustl.edu	37	8	124360274	124360274	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384971	-1	known	NULL	0.020	142	0%	112	30.4%	0	-	-	-	-	-
ZNF572	137209	genome.wustl.edu	37	8	125988742	125988742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152412.2	+1	validated	p.D78Y	0.000	231	0%	225	39.6%	0	-	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	NULL
KIAA0196	9897	genome.wustl.edu	37	8	126061289	126061289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014846.3	-1	reviewed	p.Y780D	1.000	174	0%	87	32.2%	7	28.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Strumpellin
KIAA0196	9897	genome.wustl.edu	37	8	126061296	126061296	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014846.3	-1	reviewed	p.I777	0.986	180	0%	84	20.2%	7	71.4%	-	-	-	HMMPfam_Strumpellin
MYC	4609	genome.wustl.edu	37	8	128752732	128752732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002467.4	+1	reviewed	p.S298Y	0.134	82	0%	79	10.1%	41	12.1%	benign(0.014)	tolerated(0.07)	neutral(0.320)	HMMPfam_Myc_N
GSDMC	56169	genome.wustl.edu	37	8	130762312	130762312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031415.2	-1	validated	p.K379N	0.011	101	0%	92	29.3%	0	-	benign(0.045)	tolerated(0.54)	neutral(0.010)	HMMPfam_Gasdermin
GSDMC	56169	genome.wustl.edu	37	8	130765065	130765065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031415.2	-1	validated	p.E241D	0.003	200	0%	182	22%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Gasdermin
FAM49B	51571	genome.wustl.edu	37	8	130883720	130883720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016623.3	-1	predicted	p.E32D	1.000	228	0%	180	29.4%	6	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1394
ASAP1	50807	genome.wustl.edu	37	8	131130828	131130828	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018482.2	-1	validated	p.L567F	1.000	158	0%	119	23.5%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ANK
EFR3A	23167	genome.wustl.edu	37	8	132966204	132966204	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015137.3	+1	validated	p.E210*	0.991	37	0%	16	31.2%	1	0%	-	-	-	superfamily_ARM repeat
OC90	729330	genome.wustl.edu	37	8	133051317	133051317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080399.2	-1	validated	p.E171*	0.994	100	0%	79	24.1%	0	-	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
TG	7038	genome.wustl.edu	37	8	133894112	133894112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003235.4	+1	reviewed	p.P215S	1.000	79	0%	82	19.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thyroglobulin type-1 domain
TG	7038	genome.wustl.edu	37	8	133923763	133923763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003235.4	+1	reviewed	p.D1382Y	0.108	230	0%	207	22.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NDRG1	10397	genome.wustl.edu	37	8	134276881	134276881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135242.1	-1	reviewed	p.E38D	1.000	104	0%	101	34.7%	42	42.8%	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
ZFAT	57623	genome.wustl.edu	37	8	135614561	135614561	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020863.3	-1	reviewed	p.F467	0.879	43	0%	27	37%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM135B	51059	genome.wustl.edu	37	8	139163741	139163741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015912.3	-1	validated	p.V993I	0.000	183	0%	175	28%	0	-	benign(0)	tolerated(1)	-	NULL
FAM135B	51059	genome.wustl.edu	37	8	139165370	139165370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015912.3	-1	validated	p.V450I	0.000	193	0%	135	28.1%	0	-	benign(0.017)	tolerated(0.55)	neutral(0.007)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139620186	139620186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152888.1	-1	validated	p.G1342V	0.999	87	0%	69	33.3%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL22A1	169044	genome.wustl.edu	37	8	139649023	139649023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152888.1	-1	validated	p.R1173C	0.089	866	0%	973	30.1%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Collagen
KCNK9	51305	genome.wustl.edu	37	8	140630618	140630618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016601.2	-1	reviewed	p.E336D	1.000	144	0%	116	34.5%	2	0%	benign(0.341)	tolerated(0.26)	neutral(0.142)	NULL
TRAPPC9	83696	genome.wustl.edu	37	8	141262946	141262946	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031466.5	-1	reviewed	p.T885	0.002	108	0%	83	13.3%	3	0%	-	-	-	HMMPfam_Trs120
PTK2	5747	genome.wustl.edu	37	8	141900822	141900822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005607.3	-1	reviewed	p.Y27*	1.000	138	0%	166	36.7%	5	20%	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142178147	142178147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014957.2	+1	validated	p.E520K	1.000	62	0%	48	33.3%	1	0%	possibly_damaging(0.772)	tolerated(0.13)	deleterious(0.539)	NULL
DENND3	22898	genome.wustl.edu	37	8	142202480	142202480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014957.2	+1	validated	p.E1064*	0.009	37	0%	37	21.6%	8	12.5%	-	-	-	superfamily_WD40 repeat-like
BAI1	575	genome.wustl.edu	37	8	143614791	143614791	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001702.2	+1	reviewed	p.F1178	0.750	6	0.000	16	0.375	0	-	unknown(0)	-	-	HMMPfam_7tm_2
CYP11B1	1584	genome.wustl.edu	37	8	143960484	143960484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000497.3	-1	reviewed	p.R120I	0.997	50	2%	52	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
ZNF251	90987	genome.wustl.edu	37	8	145948191	145948191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138367.1	-1	validated	p.R285I	1.000	153	0%	151	30.5%	2	100%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF34	80778	genome.wustl.edu	37	8	146003535	146003535	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030580.3	-1	validated	p.F37	0.989	17	0%	23	43.5%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF16	7564	genome.wustl.edu	37	8	146157407	146157407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029976.2	-1	reviewed	p.H256N	0.009	341	0%	424	24.1%	0	-	benign(0.087)	deleterious(0.03)	neutral(0.371)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF252	286101	genome.wustl.edu	37	8	146202778	146202778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000355436	-1	known	p.R378I	1.000	53	0%	37	48.6%	1	100%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DOCK8	81704	genome.wustl.edu	37	9	434846	434846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203447.3	+1	reviewed	p.E1582D	1.000	76	0%	75	22.7%	7	0%	benign(0.362)	tolerated(0.31)	neutral(0.142)	NULL
DOCK8	81704	genome.wustl.edu	37	9	452072	452072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203447.3	+1	reviewed	p.R1940Q	1.000	20	0%	52	34.6%	4	0%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_Ded_cyto
DMRT1	1761	genome.wustl.edu	37	9	916768	916768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021951.2	+1	reviewed	p.K276N	0.010	117	0%	127	40.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMRT2	10655	genome.wustl.edu	37	9	1056478	1056478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181872.4	+1	reviewed	p.K297N	1.000	266	0%	359	39%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
VLDLR	7436	genome.wustl.edu	37	9	2641473	2641473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003383.3	+1	reviewed	p.D141G	1.000	139	0%	173	46.2%	4	75%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
RFX3	5991	genome.wustl.edu	37	9	3270389	3270389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_134428.1	-1	reviewed	p.V447I	1.000	160	0%	165	22.4%	1	0%	possibly_damaging(0.929)	tolerated(0.06)	deleterious(0.699)	NULL
RCL1	10171	genome.wustl.edu	37	9	4826993	4826993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005772.3	+1	validated	p.I115T	0.990	105	0%	186	11.8%	5	40%	benign(0.046)	deleterious(0.04)	neutral(0.351)	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B
JAK2	3717	genome.wustl.edu	37	9	5069953	5069953	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004972.3	+1	reviewed	p.T514	0.995	68	0%	83	39.8%	4	0%	-	-	-	superfamily_SSF55550
JAK2	3717	genome.wustl.edu	37	9	5090813	5090813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004972.3	+1	reviewed	p.E987D	1.000	616	0%	552	22.1%	10	40%	possibly_damaging(0.458)	tolerated(0.28)	neutral(0.181)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
C9orf46	55848	genome.wustl.edu	37	9	5361151	5361151	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018465.2	-1	provisional	p.P83	0.605	231	0%	196	17.3%	39	23%	-	-	-	HMMPfam_DUF2368
KIAA1432	57589	genome.wustl.edu	37	9	5773975	5773975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020829.2	+1	validated	p.F1255C	1.000	159	0%	169	21.3%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5810072	5810072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024896.2	-1	validated	p.G496E	1.000	211	0%	222	41.4%	3	100%	probably_damaging(0.993)	tolerated(0.1)	deleterious(0.736)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5929105	5929105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017969.2	-1	validated	p.R813S	1.000	148	0%	125	21.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5969191	5969191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017969.2	-1	validated	p.S347Y	1.000	87	0%	104	19.2%	1	0%	benign(0.184)	tolerated(0.19)	neutral(0.067)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012449	6012449	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012416.2	-1	validated	p.G1053	0.996	120	0%	132	32.6%	0	-	-	-	-	NULL
RANBP6	26953	genome.wustl.edu	37	9	6014395	6014395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012416.2	-1	validated	p.L405I	1.000	116	0%	88	18.2%	0	-	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	HMMPfam_HEAT,superfamily_ARM-type_fold
IL33	90865	genome.wustl.edu	37	9	6251254	6251254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033439.2	+1	validated	p.S111*	0.000	177	0%	209	46.9%	0	-	-	-	-	NULL
GLDC	2731	genome.wustl.edu	37	9	6554760	6554760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000170.2	-1	reviewed	p.D742Y	1.000	39	0%	47	31.9%	0	-	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	superfamily_PyrdxlP-dep_Trfase_major
GLDC	2731	genome.wustl.edu	37	9	6592950	6592950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000170.2	-1	reviewed	p.F434L	1.000	175	0%	232	44.4%	0	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
LOC100287684	100287684	genome.wustl.edu	37	9	6835207	6835207	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342904.1	-1	model	p.L118	1.000	112	0%	121	23.1%	1	0%	-	-	-	NULL
KDM4C	23081	genome.wustl.edu	37	9	7049132	7049132	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015061.3	+1	reviewed	p.R786*	1.000	138	0%	167	19.2%	3	0%	-	-	-	NULL
PTPRD	5789	genome.wustl.edu	37	9	8460436	8460436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002839.3	-1	reviewed	p.V1284L	1.000	471	0%	491	40.7%	0	-	possibly_damaging(0.493)	tolerated(0.08)	neutral(0.465)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8518099	8518099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002839.3	-1	reviewed	p.S431L	0.983	223	0%	244	26.2%	0	-	benign(0.121)	tolerated(0.22)	neutral(0.052)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MPDZ	8777	genome.wustl.edu	37	9	13192200	13192200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003829.3	-1	validated	p.R633Q	1.000	71	0%	54	38.9%	0	-	benign(0.076)	tolerated(0.09)	neutral(0.302)	HMMSmart_SM00228,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13221476	13221476	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003829.3	-1	validated	p.T257	0.219	174	0%	194	51.5%	0	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13222363	13222363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003829.3	-1	validated	p.I206V	1.000	268	0%	357	21.6%	0	-	possibly_damaging(0.547)	tolerated(0.08)	deleterious(0.485)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NFIB	4781	genome.wustl.edu	37	9	14120548	14120548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005596.2	-1	validated	p.S379L	0.999	75	0%	86	46.5%	19	52.6%	probably_damaging(0.963)	deleterious(0.03)	deleterious(0.770)	HMMPfam_CTF_NFI
CER1	9350	genome.wustl.edu	37	9	14722413	14722413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005454.2	-1	reviewed	p.F86L	0.421	261	0%	274	41.6%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
FREM1	158326	genome.wustl.edu	37	9	14774113	14774113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000427623	-1	known	p.E16*	0.000	505	0%	537	46.7%	0	-	-	-	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14816796	14816796	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144966.5	-1	reviewed	p.E874*	0.994	17	0%	31	51.6%	1	0%	-	-	-	NULL
PSIP1	11168	genome.wustl.edu	37	9	15472667	15472667	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128217.1	-1	validated	p.R314*	1.000	350	0%	297	16.5%	36	11.1%	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15571672	15571672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173550.2	+1	predicted	p.E31G	0.998	183	0%	164	22.6%	0	-	benign(0.277)	deleterious(0.01)	neutral(0.435)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15727869	15727869	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173550.2	+1	predicted	p.E565	1.000	215	0%	241	21.2%	0	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15777758	15777758	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000449575	+1	known	p.P184H	0.979	137	0%	181	16.6%	2	0%	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17226202	17226202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017738.2	+1	validated	p.E151*	1.000	83	0%	77	39%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17226274	17226274	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017738.2	+1	validated	p.E175*	1.000	88	0%	76	43.4%	0	-	-	-	-	superfamily_Prefoldin
CNTLN	54875	genome.wustl.edu	37	9	17298351	17298351	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017738.2	+1	validated	e7+1	1.000	108	0%	81	49.4%	0	-	-	-	-	-
CNTLN	54875	genome.wustl.edu	37	9	17416159	17416159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017738.2	+1	validated	p.R1029Q	1.000	163	0%	227	39.6%	0	-	possibly_damaging(0.718)	tolerated(0.11)	deleterious(0.532)	NULL
FAM154A	158297	genome.wustl.edu	37	9	18928583	18928583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153707.1	-1	predicted	p.E298K	0.920	123	0%	88	55.7%	0	-	probably_damaging(0.989)	tolerated(0.87)	neutral(0.440)	NULL
HAUS6	54801	genome.wustl.edu	37	9	19058057	19058057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017645.3	-1	provisional	p.R903I	1.000	158	0%	170	42.4%	2	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SCARNA8	677776	genome.wustl.edu	37	9	19063686	19063686	+	RNA	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_003009.1	-1	provisional	NULL	1.000	176	0%	234	23.5%	0	-	-	-	-	-
PLIN2	123	genome.wustl.edu	37	9	19121124	19121124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122.2	-1	reviewed	p.D117Y	1.000	97	0%	113	15%	27	22.2%	possibly_damaging(0.862)	deleterious(0)	deleterious(0.778)	HMMPfam_Perilipin
DENND4C	55667	genome.wustl.edu	37	9	19369845	19369845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017925.4	+1	provisional	p.K1560N	1.000	191	0%	163	22.7%	1	100%	benign(0.067)	tolerated(0.44)	neutral(0.017)	NULL
LOC392288	392288	genome.wustl.edu	37	9	19461136	19461136	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_373277.5	-1	model	p.R308*	0.997	136	0%	140	40%	0	-	-	-	-	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
MLLT3	4300	genome.wustl.edu	37	9	20414132	20414132	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004529.2	-1	validated	p.E238*	1.000	573	0%	483	13.3%	0	-	-	-	-	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20907214	20907214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017794.3	+1	validated	p.M897I	0.989	331	0%	521	44.3%	3	100%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	superfamily_ARM-type_fold
KIAA1797	54914	genome.wustl.edu	37	9	20981507	20981507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017794.3	+1	validated	p.E1487G	1.000	164	0%	216	44.4%	8	62.5%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	superfamily_ARM-type_fold
IFNA4	3441	genome.wustl.edu	37	9	21187354	21187354	+	Silent	SNP	G	G	A	rs147890478		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021068.2	-1	validated	p.F59	0.082	272	0%	390	46.7%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA10	3446	genome.wustl.edu	37	9	21206787	21206787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002171.1	-1	provisional	p.L104I	0.000	396	0%	450	9.1%	0	-	benign(0.282)	deleterious(0)	deleterious(0.531)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA5	3442	genome.wustl.edu	37	9	21305139	21305139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002169.2	-1	validated	p.M39I	0.000	301	0%	445	22.7%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Interferon,superfamily_4_helix_cytokine
KLHL9	55958	genome.wustl.edu	37	9	21334600	21334600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018847.2	-1	validated	p.E87*	1.000	285	0%	205	20%	1	0%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IFNA13	3447	genome.wustl.edu	37	9	21367676	21367676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006900.3	-1	validated	p.E112K	0.006	483	0.2%	560	27.7%	0	-	possibly_damaging(0.585)	deleterious(0)	deleterious(0.646)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
CDKN2A	1029	genome.wustl.edu	37	9	21974588	21974588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058197.3	-1	reviewed	p.S80L	0.000	305	0%	409	24.7%	0	-	unknown(0)	-	-	NULL
DMRTA1	63951	genome.wustl.edu	37	9	22451470	22451470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022160.2	+1	validated	p.A359T	1.000	154	0%	164	14.6%	1	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_DMA
LINGO2	158038	genome.wustl.edu	37	9	27949161	27949161	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152570.1	-1	provisional	p.F503	0.952	187	0%	186	27.4%	0	-	-	-	-	NULL
LINGO2	158038	genome.wustl.edu	37	9	27950650	27950650	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152570.1	-1	provisional	p.S7*	1.000	107	0%	105	23.8%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630240	32630240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.E1780K	1.000	338	0%	443	17.8%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630919	32630919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.K1553N	1.000	353	0%	418	45.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
TAF1L	138474	genome.wustl.edu	37	9	32631965	32631965	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.R1205*	1.000	271	0.4%	394	43.1%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32632800	32632800	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.S926	1.000	318	0%	401	42.1%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633108	32633108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.D824Y	1.000	335	0%	374	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32634000	32634000	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.E526	1.000	413	0%	522	16.7%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32634323	32634323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153809.2	-1	provisional	p.E419K	1.000	545	0.4%	653	46.4%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
BAG1	573	genome.wustl.edu	37	9	33255910	33255910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004323.5	-1	reviewed	p.F301V	1.000	156	0%	172	19.2%	69	42%	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
KIAA1161	57462	genome.wustl.edu	37	9	34371853	34371853	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000297625	-1	known	p.F329	1.000	22	0%	24	33.3%	4	0%	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
DNAI1	27019	genome.wustl.edu	37	9	34512175	34512175	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012144.2	+1	reviewed	p.I460M	0.988	101	0%	132	24.2%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_WD40,superfamily_WD40_like
C9orf131	138724	genome.wustl.edu	37	9	35045392	35045392	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203299.2	+1	validated	p.S922	0.001	469	0%	426	42.7%	0	-	-	-	-	NULL
FANCG	2189	genome.wustl.edu	37	9	35077397	35077397	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004629.1	-1	reviewed	e5-1	0.992	103	0%	165	31.5%	1	100%	-	-	-	-
LOC730110	730110	genome.wustl.edu	37	9	35148104	35148104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342891.1	-1	model	p.R335K	1.000	131	0%	204	43.1%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC730110	730110	genome.wustl.edu	37	9	35148520	35148520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342891.1	-1	model	p.R221I	0.940	61	0%	104	52.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UNC13B	10497	genome.wustl.edu	37	9	35378351	35378351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006377.3	+1	reviewed	p.T626A	1.000	134	0.7%	168	25%	3	0%	possibly_damaging(0.754)	tolerated(0.11)	deleterious(0.550)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13B	10497	genome.wustl.edu	37	9	35386208	35386208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006377.3	+1	reviewed	p.D922G	1.000	166	0%	250	42.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DUF1041
RUSC2	9853	genome.wustl.edu	37	9	35548019	35548019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135999.1	+1	validated	p.R501C	1.000	63	0%	72	27.8%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C9orf100	84904	genome.wustl.edu	37	9	35662723	35662723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032818.2	-1	provisional	p.R230H	0.441	21	0%	18	22.2%	18	22.2%	benign(0.116)	deleterious(0.01)	neutral(0.415)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GBA2	57704	genome.wustl.edu	37	9	35748352	35748352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020944.2	-1	reviewed	p.M117R	1.000	124	0%	146	39.7%	4	25%	possibly_damaging(0.707)	deleterious(0)	deleterious(0.700)	NULL
OR13J1	392309	genome.wustl.edu	37	9	35870213	35870213	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004487.1	-1	provisional	p.F62	1.000	71	0%	91	23.1%	5	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2S2	56656	genome.wustl.edu	37	9	35957185	35957185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019897.2	-1	provisional	p.V304A	0.899	189	0%	233	16.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF81321
RECK	8434	genome.wustl.edu	37	9	36100519	36100519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021111.2	+1	reviewed	p.S426Y	1.000	153	0%	154	48.1%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
RECK	8434	genome.wustl.edu	37	9	36118772	36118772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021111.2	+1	reviewed	p.E758K	0.957	74	0%	63	15.9%	2	0%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
CCIN	881	genome.wustl.edu	37	9	36170079	36170079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005893.2	+1	reviewed	p.E194*	1.000	88	0%	125	41.6%	0	-	-	-	-	HMMPfam_BACK
MELK	9833	genome.wustl.edu	37	9	36665472	36665472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014791.2	+1	provisional	p.K434N	1.000	173	0%	191	12.6%	6	16.6%	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
PAX5	5079	genome.wustl.edu	37	9	37020790	37020790	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016734.1	-1	reviewed	p.G19*	1.000	110	0%	165	45.5%	3	0%	-	-	-	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
LOC647013	647013	genome.wustl.edu	37	9	37477904	37477904	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726034.2	+1	model	p.A253	0.996	87	0%	175	41.7%	0	-	-	-	-	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37724229	37724229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014907.2	+1	validated	p.S175Y	1.000	66	0%	117	41%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37740465	37740465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014907.2	+1	validated	p.R647I	0.000	53	0%	82	14.6%	0	-	benign(0.144)	tolerated(0.08)	neutral(0.312)	NULL
DCAF10	79269	genome.wustl.edu	37	9	37854962	37854962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024345.3	+1	validated	p.R346I	1.000	241	0%	287	37.6%	6	16.6%	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	superfamily_WD40 repeat-like
DCAF10	79269	genome.wustl.edu	37	9	37860089	37860089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024345.3	+1	validated	p.L404I	1.000	166	0%	187	11.2%	20	25%	benign(0.297)	tolerated(0.51)	neutral(0.101)	superfamily_WD40 repeat-like
MCART1	92014	genome.wustl.edu	37	9	37888316	37888316	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033412.3	-1	validated	p.R78*	1.000	248	0%	216	14.4%	6	16.6%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CNTNAP3	79937	genome.wustl.edu	37	9	39085785	39085785	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033655.3	-1	reviewed	p.S1130	0.237	234	0%	252	25%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ZNF658	26149	genome.wustl.edu	37	9	40773446	40773446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033160.5	-1	validated	p.T610N	0.100	733	0%	625	13.9%	0	-	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40773880	40773880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033160.5	-1	validated	p.E465D	1.000	447	0.2%	370	11.1%	0	-	benign(0.105)	tolerated(0.07)	neutral(0.327)	superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40774157	40774157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033160.5	-1	validated	p.R373I	0.995	584	0%	472	29.7%	0	-	benign(0.278)	tolerated(0.08)	neutral(0.330)	superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40774571	40774571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033160.5	-1	validated	p.S235I	0.018	276	0%	224	13.8%	0	-	benign(0.278)	deleterious(0.01)	neutral(0.435)	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43624724	43624724	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145196.1	-1	predicted	p.P1321	0.001	268	0%	199	21.1%	0	-	-	-	-	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43625339	43625339	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145196.1	-1	predicted	p.K1116	0.000	508	0%	354	28%	0	-	-	-	-	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43626820	43626820	+	Missense_Mutation	SNP	G	G	A	rs138779714	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145196.1	-1	predicted	p.R623W	0.003	196	0%	139	36%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43627789	43627789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145196.1	-1	predicted	p.D300Y	0.003	618	0%	556	23%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
LOC389722	389722	genome.wustl.edu	37	9	43815881	43815881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342910.1	+1	model	p.F212C	1.000	478	0%	336	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CBWD6	644019	genome.wustl.edu	37	9	69238295	69238295	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085457.1	-1	provisional	p.I199	0.985	460	0%	346	13.9%	0	-	-	-	-	HMMPfam_cobW,superfamily_SSF52540
ANKRD20A4	728747	genome.wustl.edu	37	9	69385696	69385696	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098805.1	+1	provisional	p.E99*	0.830	319	0%	258	14.7%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD20A4	728747	genome.wustl.edu	37	9	69410145	69410145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098805.1	+1	provisional	p.K353N	0.000	800	0%	872	8.7%	0	-	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69846808	69846808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342925.1	+1	model	p.R301I	1.000	104	0%	117	11.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288765	100288765	genome.wustl.edu	37	9	69846840	69846840	+	Missense_Mutation	SNP	G	G	A	rs4430994		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002342925.1	+1	model	p.E312K	0.825	98	0%	118	14.4%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PGM5	5239	genome.wustl.edu	37	9	70999404	70999404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021965.3	+1	validated	p.L172R	0.997	278	0%	224	29.9%	2	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Phosphoglucomutase first 3 domains
PRKACG	5568	genome.wustl.edu	37	9	71628877	71628877	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002732.3	-1	reviewed	p.F44	1.000	58	0%	71	36.6%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FAM189A2	9413	genome.wustl.edu	37	9	72000831	72000831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127608.1	+1	validated	p.S275N	1.000	72	0%	47	31.9%	20	45%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAMDC2	256691	genome.wustl.edu	37	9	72755177	72755177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153267.4	+1	validated	p.R371W	0.997	379	0%	250	26.4%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_MAM,HMMSmart_SM00137
SMC5	23137	genome.wustl.edu	37	9	72897383	72897383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015110.3	+1	validated	p.R289C	0.976	137	0%	109	29.4%	1	0%	benign(0.145)	tolerated(0.11)	neutral(0.284)	HMMPfam_SMC_N,superfamily_SSF52540
TRPM3	80036	genome.wustl.edu	37	9	73151013	73151013	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000396280	-1	known	p.R1509*	0.986	247	0%	243	18.1%	0	-	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73461447	73461447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007471.2	-1	reviewed	p.W175G	1.000	179	0%	141	37.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMC1	117531	genome.wustl.edu	37	9	75445572	75445572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138691.2	+1	reviewed	p.N745S	1.000	240	0%	224	28.1%	0	-	unknown(0)	tolerated(0.66)	-	NULL
ALDH1A1	216	genome.wustl.edu	37	9	75531910	75531910	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000689.3	-1	reviewed	p.R321*	0.827	285	0%	227	18.9%	101	0%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
ALDH1A1	216	genome.wustl.edu	37	9	75542069	75542069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000689.3	-1	reviewed	p.R156K	1.000	239	0%	133	16.5%	48	14.5%	benign(0.003)	tolerated(0.11)	neutral(0.272)	HMMPfam_Aldedh,superfamily_ALDH-like
TRPM6	140803	genome.wustl.edu	37	9	77417031	77417031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017662.4	-1	reviewed	p.D598N	0.958	119	0%	98	23.5%	0	-	benign(0.317)	deleterious(0.04)	neutral(0.448)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77448916	77448916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017662.4	-1	reviewed	p.D223N	1.000	201	0%	261	29.1%	0	-	benign(0.014)	tolerated(0.18)	neutral(0.057)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77457148	77457148	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017662.4	-1	reviewed	p.T88	0.002	254	0%	209	26.3%	0	-	-	-	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78601104	78601104	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006200.3	+1	reviewed	p.F118	0.626	194	0%	159	23.3%	0	-	-	-	-	superfamily_Subtilisin-like
PCSK5	5125	genome.wustl.edu	37	9	78784662	78784662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006200.3	+1	reviewed	p.F554L	0.999	189	0%	128	25%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like
PCSK5	5125	genome.wustl.edu	37	9	78784745	78784745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006200.3	+1	reviewed	p.F582C	1.000	166	0%	124	28.2%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like
PRUNE2	158471	genome.wustl.edu	37	9	79318388	79318388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015225.2	-1	validated	p.L2714S	0.010	49	0%	60	55%	0	-	benign(0.323)	deleterious(0.04)	neutral(0.450)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320041	79320041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015225.2	-1	validated	p.D2383E	0.000	204	0%	188	22.3%	0	-	possibly_damaging(0.49)	tolerated(0.06)	deleterious(0.486)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79980394	79980394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033305.2	+1	reviewed	p.D2744Y	1.000	96	0%	69	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNA14	9630	genome.wustl.edu	37	9	80040628	80040628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004297.3	-1	reviewed	p.R243C	1.000	195	0%	181	21%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLE4	7091	genome.wustl.edu	37	9	82264737	82264737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000399288	+1	known	p.E131D	0.007	109	0%	107	29%	0	-	unknown(0)	tolerated(0.26)	-	HMMPfam_TLE_N
FAM75D1	389763	genome.wustl.edu	37	9	84603897	84603897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001670.2	+1	validated	p.E55G	0.000	198	0%	263	27.8%	0	-	benign(0.045)	tolerated(0.28)	neutral(0.034)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84608680	84608680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001670.2	+1	validated	p.E1099K	0.000	206	0%	142	29.6%	0	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84609858	84609858	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001670.2	+1	validated	p.Q1491	0.000	132	0%	102	24.5%	0	-	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85615940	85615940	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152573.2	-1	provisional	p.F436	0.958	148	0%	100	31%	0	-	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85622385	85622385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152573.2	-1	provisional	p.R332L	1.000	257	0%	235	32.8%	1	100%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
FRMD3	257019	genome.wustl.edu	37	9	85863195	85863195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174938.4	-1	validated	p.E478*	1.000	260	0%	191	26.2%	1	100%	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85914084	85914084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174938.4	-1	validated	p.Q315P	1.000	99	0%	84	19%	0	-	possibly_damaging(0.837)	tolerated(0.3)	neutral(0.348)	HMMPfam_FERM_C,superfamily_PH domain-like
C9orf103	414328	genome.wustl.edu	37	9	86258392	86258392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000376417	+1	known	p.E73*	1.000	90	0%	99	12.1%	17	41.1%	-	-	-	NULL
GKAP1	80318	genome.wustl.edu	37	9	86357484	86357484	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025211.3	-1	reviewed	p.V312	0.998	203	0%	216	28.2%	2	100%	-	-	-	NULL
KIF27	55582	genome.wustl.edu	37	9	86495361	86495361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017576.1	-1	provisional	p.I832L	0.554	473	0%	374	30.2%	1	100%	benign(0.069)	tolerated(0.62)	neutral(0.009)	NULL
KIF27	55582	genome.wustl.edu	37	9	86518519	86518519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017576.1	-1	provisional	p.S305Y	1.000	218	0%	240	27.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGTPBP1	23287	genome.wustl.edu	37	9	88248055	88248055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015239.2	-1	validated	p.P473S	0.001	202	0%	100	39%	0	-	benign(0.014)	tolerated(0.07)	neutral(0.320)	NULL
GOLM1	51280	genome.wustl.edu	37	9	88661459	88661459	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016548.3	-1	reviewed	p.Y131	0.033	42	0%	55	25.5%	34	14.7%	-	-	-	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88916434	88916434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024617.3	-1	validated	p.E1393*	1.000	234	0%	246	28.9%	3	100%	-	-	-	superfamily_Retrovirus zinc finger-like domains
DAPK1	1612	genome.wustl.edu	37	9	90315120	90315120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004938.2	+1	reviewed	p.H947N	1.000	161	0%	175	29.1%	8	50%	benign(0.305)	tolerated(0.17)	neutral(0.154)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90322134	90322134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004938.2	+1	reviewed	p.L1383P	1.000	28	0%	52	23.1%	10	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
C9orf79	286234	genome.wustl.edu	37	9	90503001	90503001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178828.4	+1	validated	p.C1200S	0.000	44	0%	27	29.6%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
C9orf79	286234	genome.wustl.edu	37	9	90503515	90503515	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178828.4	+1	validated	p.E1371	0.000	71	0%	66	34.8%	0	-	benign(0.014)	-	-	NULL
SHC3	53358	genome.wustl.edu	37	9	91661883	91661883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016848.4	-1	validated	p.T330M	0.312	50	0%	76	31.6%	0	-	benign(0.036)	tolerated(0.11)	neutral(0.274)	NULL
SHC3	53358	genome.wustl.edu	37	9	91686130	91686130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016848.4	-1	validated	p.A256G	1.000	83	0%	69	26.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SEMA4D	10507	genome.wustl.edu	37	9	91993948	91993948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006378.3	-1	validated	p.N754D	1.000	14	0%	26	23.1%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SEMA4D	10507	genome.wustl.edu	37	9	92007426	92007426	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006378.3	-1	validated	p.S178	0.000	50	0%	35	28.6%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
IARS	3376	genome.wustl.edu	37	9	95050173	95050173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002161.4	-1	reviewed	p.T99I	1.000	170	0%	209	21.1%	0	-	benign(0.01)	tolerated(0.14)	neutral(0.250)	HMMPfam_tRNA-synt_1,superfamily_SSF52374
OMD	4958	genome.wustl.edu	37	9	95177670	95177670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005014.2	-1	validated	p.E344*	0.967	116	0%	116	29.3%	0	-	-	-	-	superfamily_L domain-like
ASPN	54829	genome.wustl.edu	37	9	95237148	95237148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017680.3	-1	validated	p.A11V	1.000	162	0%	122	28.7%	5	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
ECM2	1842	genome.wustl.edu	37	9	95274321	95274321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001393.2	-1	reviewed	p.S381Y	1.000	273	0%	180	30%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_LRR_1,superfamily_SSF52058
ZNF484	83744	genome.wustl.edu	37	9	95608934	95608934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031486.1	-1	provisional	p.R712I	1.000	186	0%	210	34.8%	0	-	possibly_damaging(0.828)	tolerated(0.11)	deleterious(0.586)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PTPDC1	138639	genome.wustl.edu	37	9	96859763	96859763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152422.3	+1	reviewed	p.F303L	1.000	295	0%	253	28.9%	2	100%	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	NULL
ZNF169	169841	genome.wustl.edu	37	9	97062151	97062151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194320.2	+1	validated	p.S104L	0.001	126	0%	123	27.6%	0	-	benign(0.059)	tolerated(0.18)	neutral(0.060)	NULL
C9orf3	84909	genome.wustl.edu	37	9	97555102	97555102	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032823.3	+1	provisional	p.T340	0.061	229	0%	206	21.4%	2	50%	-	-	-	superfamily_SSF63737
FANCC	2176	genome.wustl.edu	37	9	97873756	97873756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000136.2	-1	reviewed	p.A440T	0.938	45	0%	46	15.2%	1	0%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Fanconi_C
FANCC	2176	genome.wustl.edu	37	9	97873825	97873825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000136.2	-1	reviewed	p.E417K	0.397	57	0%	50	20%	3	66.6%	benign(0.224)	tolerated(0.25)	neutral(0.059)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98209263	98209263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000264.3	-1	reviewed	p.S1425	0.275	62	0%	71	38%	1	0%	unknown(0)	-	-	NULL
PTCH1	5727	genome.wustl.edu	37	9	98212216	98212216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000264.3	-1	reviewed	p.F1152L	1.000	28	0%	48	39.6%	4	25%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Patched,superfamily_SSF82866
C9orf102	375748	genome.wustl.edu	37	9	98775222	98775222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000407474	+1	known	p.L445I	0.283	137	0%	78	33.3%	1	100%	possibly_damaging(0.923)	tolerated(0.37)	neutral(0.392)	NULL
HSD17B3	3293	genome.wustl.edu	37	9	99006625	99006625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000197.1	-1	reviewed	p.E220*	0.991	149	0%	125	17.6%	0	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
HABP4	22927	genome.wustl.edu	37	9	99252311	99252311	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014282.2	+1	validated	p.A411	0.762	86	0%	78	24.4%	35	42.8%	-	-	-	NULL
ZNF322P1	387328	genome.wustl.edu	37	9	99961416	99961416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199005.1	-1	validated	p.F126L	0.589	491	0%	364	29.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
C9orf174	100499483	genome.wustl.edu	37	9	100080790	100080790	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020893.1	+1	predicted	p.T518	0.001	25	0%	23	34.8%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100124606	100124606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000375202	+1	known	p.P1306L	0.000	63	0%	49	14.3%	0	-	benign(0.138)	deleterious(0)	neutral(0.456)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100132355	100132355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020893.1	+1	predicted	p.E1436D	0.001	30	0%	29	20.7%	0	-	benign(0.195)	tolerated(0.51)	neutral(0.027)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100204017	100204017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014290.2	+1	validated	p.N239H	1.000	160	0.6%	131	22.9%	0	-	benign(0.145)	tolerated(0.06)	neutral(0.335)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100222963	100222963	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014290.2	+1	validated	p.T453	0.111	141	0%	104	14.4%	9	22.2%	-	-	-	NULL
TDRD7	23424	genome.wustl.edu	37	9	100245206	100245206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014290.2	+1	validated	p.R830C	0.991	239	0%	221	30.8%	5	40%	benign(0.228)	tolerated(0.19)	neutral(0.072)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100249576	100249576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014290.2	+1	validated	p.R1013Q	0.993	204	0%	159	19.5%	58	27.5%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_TUDOR
TMOD1	7111	genome.wustl.edu	37	9	100328174	100328174	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003275.3	+1	reviewed	p.K221N	0.419	148	0%	127	22.8%	35	34.2%	possibly_damaging(0.947)	tolerated(0.1)	deleterious(0.677)	HMMPfam_Tropomodulin,superfamily_SSF52047
TMOD1	7111	genome.wustl.edu	37	9	100353711	100353711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003275.3	+1	reviewed	p.D337Y	1.000	206	0%	151	31.1%	143	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tropomodulin,superfamily_SSF52047
TSTD2	158427	genome.wustl.edu	37	9	100373908	100373908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139246.4	-1	validated	p.V226G	0.997	260	0%	278	29.9%	4	75%	benign(0.086)	tolerated(0.24)	neutral(0.044)	NULL
TSTD2	158427	genome.wustl.edu	37	9	100388068	100388068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139246.4	-1	validated	p.S126L	0.000	246	0%	259	29.3%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101073404	101073404	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005458.7	-1	reviewed	p.I659	0.870	185	0%	171	29.2%	0	-	-	-	-	HMMPfam_7tm_3
ANKS6	203286	genome.wustl.edu	37	9	101536359	101536359	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173551.3	-1	provisional	p.R541*	1.000	29	0%	21	33.3%	9	0%	-	-	-	NULL
COL15A1	1306	genome.wustl.edu	37	9	101787281	101787281	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001855.3	+1	reviewed	p.P660	0.998	87	0%	124	27.4%	7	0%	-	-	-	HMMPfam_Collagen
ERP44	23071	genome.wustl.edu	37	9	102784416	102784416	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015051.1	-1	validated	p.R127	1.000	318	0%	319	27.3%	70	30%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
TEX10	54881	genome.wustl.edu	37	9	103102546	103102546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017746.3	-1	validated	p.N415H	0.999	255	0%	241	28.2%	5	0%	possibly_damaging(0.834)	tolerated(0.24)	neutral(0.355)	NULL
MSANTD3	91283	genome.wustl.edu	37	9	103213161	103213161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080655.1	+1	predicted	p.K247N	1.000	147	0%	169	25.4%	6	16.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
BAAT	570	genome.wustl.edu	37	9	104125239	104125239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127610.1	-1	reviewed	p.S243Y	0.909	224	0%	216	33.3%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_BAAT_C,superfamily_SSF53474
ZNF189	7743	genome.wustl.edu	37	9	104170637	104170637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003452.2	+1	validated	p.R196I	1.000	386	0%	349	19.5%	1	100%	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF189	7743	genome.wustl.edu	37	9	104170889	104170889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003452.2	+1	validated	p.R280I	1.000	805	0.1%	696	22.8%	1	0%	probably_damaging(0.973)	tolerated(0.2)	neutral(0.464)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RNF20	56254	genome.wustl.edu	37	9	104317023	104317023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019592.5	+1	reviewed	p.K689N	1.000	216	0%	144	22.9%	6	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
GRIN3A	116443	genome.wustl.edu	37	9	104433064	104433064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133445.2	-1	reviewed	p.L544	1.000	167	0%	165	30.9%	0	-	-	-	-	superfamily_SSF53822,superfamily_SSF53850
CYLC2	1539	genome.wustl.edu	37	9	105757676	105757676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001340.3	+1	reviewed	p.R5I	1.000	329	0%	243	26.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105765496	105765496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001340.3	+1	reviewed	p.G44E	0.998	313	0%	280	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767861	105767861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001340.3	+1	reviewed	p.K316N	0.000	305	0%	198	24.7%	0	-	unknown(0)	tolerated(0.06)	-	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767921	105767921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001340.3	+1	reviewed	p.K336N	0.441	338	0%	193	31.1%	0	-	unknown(0)	tolerated(0.46)	-	NULL
OR13C4	138804	genome.wustl.edu	37	9	107288807	107288807	+	Silent	SNP	C	C	T	rs141274906	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001919.1	-1	provisional	p.T228	0.003	253	0%	181	22.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR13C8	138802	genome.wustl.edu	37	9	107332096	107332096	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004483.1	+1	provisional	p.I216	0.170	298	0%	180	26.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NIPSNAP3B	55335	genome.wustl.edu	37	9	107535280	107535280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018376.2	+1	provisional	p.R224W	1.000	141	0%	141	27%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIPSNAP
ABCA1	19	genome.wustl.edu	37	9	107588035	107588035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005502.2	-1	reviewed	p.S824L	0.993	246	0%	288	16%	0	-	possibly_damaging(0.671)	tolerated(0.16)	neutral(0.297)	NULL
ABCA1	19	genome.wustl.edu	37	9	107645352	107645352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005502.2	-1	reviewed	p.R130I	0.006	220	0%	236	31.8%	0	-	benign(0.123)	tolerated(0.14)	neutral(0.260)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687544	109687544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021224.4	+1	validated	p.R451*	1.000	347	0%	345	13%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF462	58499	genome.wustl.edu	37	9	109688068	109688068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021224.4	+1	validated	p.F625L	1.000	879	0%	722	26.9%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109691732	109691732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021224.4	+1	validated	p.R1847C	1.000	118	0%	89	27%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
IKBKAP	8518	genome.wustl.edu	37	9	111655307	111655307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003640.3	-1	reviewed	p.E973K	0.964	349	0%	266	32.3%	3	66.6%	benign(0.006)	tolerated(0.51)	neutral(0.009)	NULL
IKBKAP	8518	genome.wustl.edu	37	9	111660956	111660956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003640.3	-1	reviewed	p.P760S	1.000	597	0%	481	23.1%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_IKI3
CTNNAL1	8727	genome.wustl.edu	37	9	111735037	111735037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003798.2	-1	provisional	p.K422T	1.000	83	0%	76	23.7%	6	66.6%	possibly_damaging(0.697)	tolerated(0.1)	deleterious(0.536)	superfamily_alpha-catenin/vinculin
CTNNAL1	8727	genome.wustl.edu	37	9	111741738	111741738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003798.2	-1	provisional	p.E308D	1.000	112	0%	132	31.8%	1	0%	unknown(0)	tolerated(0.35)	-	superfamily_alpha-catenin/vinculin
PTPN3	5774	genome.wustl.edu	37	9	112141883	112141883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002829.3	-1	reviewed	p.L899I	1.000	75	0%	75	24%	14	7.1%	benign(0.411)	tolerated(0.17)	neutral(0.192)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN3	5774	genome.wustl.edu	37	9	112190917	112190917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002829.3	-1	reviewed	p.H271P	1.000	103	0%	45	24.4%	4	25%	possibly_damaging(0.667)	deleterious(0.02)	deleterious(0.619)	HMMPfam_FERM_C,superfamily_SSF50729
C9orf152	401546	genome.wustl.edu	37	9	112963727	112963727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012993.2	-1	validated	p.S74L	0.236	156	0%	122	25.4%	17	70.5%	benign(0.008)	tolerated(0.37)	neutral(0.019)	NULL
TXNDC8	255220	genome.wustl.edu	37	9	113091516	113091516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003936.2	-1	validated	p.S62Y	0.226	159	0%	174	24.1%	0	-	probably_damaging(0.983)	tolerated(0.08)	deleterious(0.729)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
SVEP1	79987	genome.wustl.edu	37	9	113228229	113228229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153366.3	-1	validated	p.K1080Q	0.949	53	0%	45	42.2%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
MUSK	4593	genome.wustl.edu	37	9	113538238	113538238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005592.3	+1	reviewed	p.H452R	0.999	348	0%	272	20.6%	0	-	benign(0.067)	tolerated(0.1)	neutral(0.291)	NULL
OR2K2	26248	genome.wustl.edu	37	9	114090714	114090714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000374428	-1	known	p.K29N	0.897	223	0%	225	19.1%	0	-	benign(0.037)	tolerated(0.17)	neutral(0.061)	superfamily_SSF81321
LRRC37A5P	652972	genome.wustl.edu	37	9	114371300	114371300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000374306	-1	known	p.R103Q	0.001	70	0%	135	34.1%	0	-	unknown(0)	-	-	NULL
C9orf84	158401	genome.wustl.edu	37	9	114503791	114503791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173521.3	-1	validated	p.R316I	0.084	52	0%	69	27.5%	0	-	benign(0.082)	tolerated(0.14)	neutral(0.256)	NULL
ZNF883	169834	genome.wustl.edu	37	9	115759677	115759677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101338.1	-1	validated	p.S288Y	1.000	332	0%	253	25.3%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF883	169834	genome.wustl.edu	37	9	115759770	115759770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101338.1	-1	validated	p.R257I	1.000	219	0%	171	19.9%	2	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF883	169834	genome.wustl.edu	37	9	115760190	115760190	+	Missense_Mutation	SNP	C	C	A	rs185997453	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101338.1	-1	validated	p.R117I	0.971	144	0%	149	26.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FKBP15	23307	genome.wustl.edu	37	9	115928418	115928418	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015258.1	-1	validated	p.P1200	0.927	22	0%	12	41.7%	74	41.8%	-	-	-	NULL
FKBP15	23307	genome.wustl.edu	37	9	115946040	115946040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015258.1	-1	validated	p.R601Q	1.000	289	0.3%	304	26%	9	33.3%	probably_damaging(0.991)	tolerated(0.2)	deleterious(0.493)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116812120	116812120	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133374.2	+1	validated	p.F753	0.966	79	0%	81	33.3%	9	77.7%	-	-	-	NULL
ATP6V1G1	9550	genome.wustl.edu	37	9	117354909	117354909	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004888.3	+1	reviewed	p.E54*	1.000	13	0%	17	23.5%	136	11%	-	-	-	HMMPfam_V-ATPase_G
TNC	3371	genome.wustl.edu	37	9	117844986	117844986	+	Silent	SNP	G	G	T	rs189608079	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002160.2	-1	validated	p.I744	0.993	92	0%	65	16.9%	4	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117848353	117848353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002160.2	-1	validated	p.F553V	0.996	65	0%	76	21.1%	69	15.9%	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2
ASTN2	23245	genome.wustl.edu	37	9	119202920	119202920	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000417725	-1	known	p.S32L	0.996	145	0%	113	16.8%	1	100%	-	-	-	NULL
TLR4	7099	genome.wustl.edu	37	9	120475855	120475855	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138554.3	+1	reviewed	p.F483	0.176	190	0%	124	32.3%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120476077	120476077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138554.3	+1	reviewed	p.M557I	0.000	176	0%	90	16.7%	2	0%	benign(0.003)	tolerated(0.19)	neutral(0.050)	superfamily_L domain-like
CDK5RAP2	55755	genome.wustl.edu	37	9	123220733	123220733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018249.4	-1	reviewed	p.E790D	0.965	214	0%	211	30.3%	2	50%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123249700	123249700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018249.4	-1	reviewed	p.D500Y	1.000	170	0%	137	25.5%	3	100%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124530909	124530909	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032552.2	+1	validated	p.E604	1.000	57	0%	47	31.9%	4	25%	-	-	-	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
PTGS1	5742	genome.wustl.edu	37	9	125143686	125143686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000962.2	+1	reviewed	p.R178H	0.001	54	0%	51	27.5%	1	0%	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Heme-dependent peroxidases
OR1J1	347168	genome.wustl.edu	37	9	125239431	125239431	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004451.1	-1	provisional	p.Y259D	0.147	182	0%	166	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1J1	347168	genome.wustl.edu	37	9	125239867	125239867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004451.1	-1	provisional	p.F113	0.830	126	0%	158	19%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR1L6	392390	genome.wustl.edu	37	9	125512138	125512138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004453.2	+1	validated	p.K40N	0.247	473	0%	483	24%	0	-	possibly_damaging(0.619)	tolerated(0.15)	neutral(0.457)	superfamily_SSF81321
OR5C1	392391	genome.wustl.edu	37	9	125551281	125551281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001923.1	+1	provisional	p.R24C	0.001	180	0%	219	23.7%	0	-	benign(0.016)	tolerated(0.07)	neutral(0.320)	superfamily_Family A G protein-coupled receptor-like
PDCL	5082	genome.wustl.edu	37	9	125582741	125582741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005388.3	-1	reviewed	p.E177*	1.000	189	0%	180	27.8%	4	25%	-	-	-	HMMPfam_Phosducin,superfamily_Thioredoxin-like
RC3H2	54542	genome.wustl.edu	37	9	125621111	125621111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100588.1	-1	validated	p.Q707R	1.000	184	0%	203	33.5%	1	100%	benign(0.025)	tolerated(0.15)	neutral(0.242)	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681448	125681448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020924.2	-1	provisional	p.D256Y	1.000	200	0%	249	32.5%	1	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125772741	125772741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012197.3	+1	validated	p.R495C	1.000	140	0%	124	39.5%	0	-	possibly_damaging(0.66)	deleterious(0.04)	deleterious(0.582)	NULL
STRBP	55342	genome.wustl.edu	37	9	125941299	125941299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018387.4	-1	validated	p.E71K	0.991	393	0%	285	25.6%	7	71.4%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127652754	127652754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002077.3	-1	reviewed	p.E471*	1.000	138	0%	196	29.1%	1	0%	-	-	-	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127674222	127674222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002077.3	-1	reviewed	p.Q309H	0.991	312	0%	372	27.2%	0	-	benign(0.296)	tolerated(0.13)	neutral(0.344)	superfamily_Prefoldin
GOLGA1	2800	genome.wustl.edu	37	9	127691521	127691521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002077.3	-1	reviewed	p.E92G	1.000	96	0%	77	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCAI	286205	genome.wustl.edu	37	9	127781206	127781206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173690.4	-1	reviewed	p.D268Y	1.000	246	0%	195	24.6%	1	0%	probably_damaging(0.992)	tolerated(1)	neutral(0.448)	NULL
HSPA5	3309	genome.wustl.edu	37	9	128000875	128000875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005347.3	-1	validated	p.D410Y	1.000	105	0%	112	25%	1215	32.6%	benign(0.093)	deleterious(0.01)	neutral(0.413)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
GAPVD1	26130	genome.wustl.edu	37	9	128064821	128064821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015635.2	+1	validated	p.E249*	1.000	288	0%	200	28%	0	-	-	-	-	HMMPfam_RasGAP,superfamily_Rho_GAP
GAPVD1	26130	genome.wustl.edu	37	9	128099668	128099668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015635.2	+1	validated	p.S919Y	1.000	140	0%	134	27.6%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MAPKAP1	79109	genome.wustl.edu	37	9	128434810	128434810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006617.1	-1	reviewed	p.R15Q	1.000	236	0%	184	26.6%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LMX1B	4010	genome.wustl.edu	37	9	129453169	129453169	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002316.3	+1	reviewed	p.F104	0.659	16	0%	22	22.7%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ZBTB43	23099	genome.wustl.edu	37	9	129595087	129595087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135776.1	+1	validated	p.I100S	1.000	92	0%	93	32.3%	0	-	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
RPL12	6136	genome.wustl.edu	37	9	130211898	130211898	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000976.2	-1	reviewed	p.R67	1.000	34	0%	33	39.4%	1776	47.7%	-	-	-	HMMPfam_Ribosomal_L11_N,HMMSmart_SM00649,superfamily_Ribosomal protein L11 N-terminal domain
LRSAM1	90678	genome.wustl.edu	37	9	130236144	130236144	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005373.1	+1	validated	p.I228	0.000	66	0%	65	33.8%	4	0%	-	-	-	superfamily_L domain-like
LRSAM1	90678	genome.wustl.edu	37	9	130263303	130263303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005373.1	+1	validated	p.M643V	0.001	59	0%	63	41.3%	22	36.3%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
AK1	203	genome.wustl.edu	37	9	130630633	130630633	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000413016	-1	known	p.S102L	0.052	14	0%	23	30.4%	160	42.5%	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNM1	1759	genome.wustl.edu	37	9	130982545	130982545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004408.2	+1	reviewed	p.F258L	1.000	70	0%	73	26%	0	-	possibly_damaging(0.731)	deleterious(0)	deleterious(0.712)	HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPTAN1	6709	genome.wustl.edu	37	9	131355300	131355300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130438.1	+1	validated	p.R1065H	1.000	28	0%	24	37.5%	18	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SPEC,superfamily_Spectrin
TBC1D13	54662	genome.wustl.edu	37	9	131550668	131550668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018201.3	+1	validated	p.R27W	0.997	68	0%	77	24.7%	5	80%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_RabGAP_TBC
NUP188	23511	genome.wustl.edu	37	9	131735486	131735486	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015354.1	+1	validated	p.F387	0.958	144	0%	156	30.8%	4	25%	-	-	-	HMMPfam_Nup188
NUP188	23511	genome.wustl.edu	37	9	131756671	131756671	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015354.1	+1	validated	p.L1013V	0.994	191	0%	194	24.2%	11	63.6%	possibly_damaging(0.573)	deleterious(0.03)	deleterious(0.561)	NULL
FAM73B	84895	genome.wustl.edu	37	9	131832166	131832166	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032809.2	+1	predicted	p.S499	1.000	55	0%	49	20.4%	6	16.6%	-	-	-	HMMPfam_DUF2217
ASS1	445	genome.wustl.edu	37	9	133333847	133333847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000413709	+1	known	p.S16N	1.000	25	0%	24	29.2%	107	21.4%	-	-	-	NULL
ASS1	445	genome.wustl.edu	37	9	133376396	133376396	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000050.4	+1	reviewed	p.V409	1.000	127	0%	164	21.3%	588	3.5%	-	-	-	NULL
FUBP3	8939	genome.wustl.edu	37	9	133491892	133491892	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003934.1	+1	validated	p.I185	0.981	30	0%	29	17.2%	27	44.4%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
NUP214	8021	genome.wustl.edu	37	9	134019784	134019784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005085.2	+1	reviewed	p.S471Y	0.818	903	0.1%	1012	24.8%	3	66.6%	possibly_damaging(0.604)	tolerated(0.07)	deleterious(0.528)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134350345	134350345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013318.3	+1	validated	p.K943N	1.000	15	0%	13	30.8%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
POMT1	10585	genome.wustl.edu	37	9	134393624	134393624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000372220	+1	known	p.T7A	0.000	12	0%	16	37.5%	0	-	possibly_damaging(0.857)	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135204332	135204332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015046.5	-1	reviewed	p.K885E	0.000	226	0%	184	29.3%	1	100%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
GTF3C4	9329	genome.wustl.edu	37	9	135554622	135554622	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012204.2	+1	validated	p.L539*	0.993	169	0%	181	26%	1	0%	-	-	-	NULL
OBP2B	29989	genome.wustl.edu	37	9	136083888	136083888	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014581.2	-1	validated	p.G58	0.000	46	0%	35	31.4%	200	1%	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
SURF6	6838	genome.wustl.edu	37	9	136199547	136199547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006753.4	-1	reviewed	p.R148I	0.614	48	0%	69	15.9%	29	34.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SURF6
DBH	1621	genome.wustl.edu	37	9	136507511	136507511	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000787.3	+1	reviewed	p.I223	0.991	35	0%	36	38.9%	0	-	-	-	-	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F
WDR5	11091	genome.wustl.edu	37	9	137007080	137007080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017588.2	+1	reviewed	p.D92N	0.992	16	0%	23	26.1%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
COL5A1	1289	genome.wustl.edu	37	9	137622250	137622250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000093.3	+1	reviewed	p.D365N	0.256	35	0%	72	12.5%	5	0%	unknown(0)	tolerated(0.44)	-	NULL
COL5A1	1289	genome.wustl.edu	37	9	137707811	137707811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000093.3	+1	reviewed	p.D1367Y	1.000	26	0%	28	21.4%	5	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL5A1	1289	genome.wustl.edu	37	9	137717681	137717681	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371820	+1	known	p.L86I	0.996	56	0%	82	34.1%	28	0%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
PPP1R26	9858	genome.wustl.edu	37	9	138378867	138378867	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014811.3	+1	validated	p.I837	0.171	17	0%	30	40%	12	41.6%	-	-	-	NULL
LCN9	392399	genome.wustl.edu	37	9	138555206	138555206	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001676.1	+1	provisional	p.I13	0.001	19	0%	17	29.4%	0	-	-	-	-	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138713422	138713422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015447.3	-1	validated	p.E1029K	1.000	46	0%	45	28.9%	2	0%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
CACNA1B	774	genome.wustl.edu	37	9	140946613	140946613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000718.2	+1	validated	p.K1260N	1.000	20	0%	24	29.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140954126	140954126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000718.2	+1	validated	p.W1535C	1.000	84	0%	57	12.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	141016396	141016396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000718.2	+1	validated	p.S2322L	0.005	22	0%	19	47.4%	0	-	benign(0.122)	deleterious(0.02)	neutral(0.393)	NULL
LARP4B	23185	genome.wustl.edu	37	10	859147	859147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015155.1	-1	provisional	p.R646*	0.975	85	0%	73	34.2%	12	25%	-	-	-	NULL
PITRM1	10531	genome.wustl.edu	37	10	3185614	3185614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014889.2	-1	validated	p.R871Q	0.637	56	0%	38	23.7%	70	24.2%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
AKR1C3	8644	genome.wustl.edu	37	10	5144686	5144686	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003739.4	+1	reviewed	p.P230	0.000	127	0%	109	17.4%	11	0%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TUBAL3	79861	genome.wustl.edu	37	10	5435597	5435597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024803.2	-1	validated	p.K408N	1.000	80	0%	76	26.3%	0	-	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	superfamily_Tubulin C-terminal domain-like
FAM208B	54906	genome.wustl.edu	37	10	5762919	5762919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017782.4	+1	validated	p.M44I	0.000	96	0%	109	25.7%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5789816	5789816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017782.4	+1	validated	p.E1478K	0.010	89	0%	67	35.8%	1	0%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5799555	5799555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017782.4	+1	validated	p.L2269I	0.000	355	0%	288	29.2%	9	11.1%	possibly_damaging(0.667)	tolerated(0.34)	neutral(0.259)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5803367	5803367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017782.4	+1	validated	p.E2369D	0.000	252	0%	221	24%	23	52.1%	possibly_damaging(0.893)	tolerated(0.11)	deleterious(0.623)	NULL
FBXO18	84893	genome.wustl.edu	37	10	5958395	5958395	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032807.3	+1	reviewed	p.V639	1.000	182	0%	155	19.4%	29	13.7%	-	-	-	superfamily_SSF52540
IL2RA	3559	genome.wustl.edu	37	10	6061878	6061878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000417.2	-1	reviewed	p.E204K	0.015	39	0%	70	14.3%	1	0%	possibly_damaging(0.906)	tolerated(0.08)	deleterious(0.659)	NULL
IL2RA	3559	genome.wustl.edu	37	10	6067923	6067923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000417.2	-1	reviewed	p.G44*	0.968	89	0%	92	23.9%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP
PRKCQ	5588	genome.wustl.edu	37	10	6498675	6498675	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000397178	-1	known	p.R309Q	0.919	205	0%	185	31.9%	6	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SFMBT2	57713	genome.wustl.edu	37	10	7214511	7214511	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029880.1	-1	provisional	p.F699	0.995	20	0%	24	29.2%	0	-	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7230644	7230644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029880.1	-1	provisional	p.E584K	1.000	92	0%	104	27.9%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7423858	7423858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029880.1	-1	provisional	p.M1I	1.000	93	0%	78	29.5%	0	-	benign(0.147)	deleterious(0)	neutral(0.458)	NULL
ITIH5	80760	genome.wustl.edu	37	10	7697597	7697597	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030569.5	-1	validated	p.R44	1.000	169	0%	138	21%	0	-	-	-	-	HMMSmart_SM00609
TAF3	83860	genome.wustl.edu	37	10	7866349	7866349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031923.2	+1	provisional	p.E79*	1.000	410	0%	301	30.9%	2	0%	-	-	-	HMMPfam_Bromo_TP,HMMSmart_BTP
TAF3	83860	genome.wustl.edu	37	10	8006793	8006793	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031923.2	+1	provisional	p.A440	0.000	292	0%	288	16%	0	-	-	-	-	NULL
CELF2	10659	genome.wustl.edu	37	10	11047382	11047382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025077.2	+1	reviewed	p.R11I	1.000	242	0%	338	20.1%	0	-	benign(0.17)	tolerated(0.29)	neutral(0.044)	superfamily_RNA-binding domain RBD
USP6NL	9712	genome.wustl.edu	37	10	11551642	11551642	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080491.2	-1	validated	p.K93N	1.000	22	0%	18	38.9%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ypt/Rab-GAP domain of gyp1p
SEC61A2	55176	genome.wustl.edu	37	10	12203118	12203118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018144.3	+1	reviewed	p.D389Y	1.000	131	0%	122	33.6%	7	14.2%	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
CAMK1D	57118	genome.wustl.edu	37	10	12595226	12595226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153498.2	+1	reviewed	p.G32E	1.000	243	0%	266	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CAMK1D	57118	genome.wustl.edu	37	10	12811797	12811797	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153498.2	+1	reviewed	p.V188	0.005	80	0%	61	32.8%	3	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAMK1D	57118	genome.wustl.edu	37	10	12870833	12870833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153498.2	+1	reviewed	p.E369K	0.984	31	0%	32	21.9%	1	0%	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13386914	13386914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012247.3	-1	reviewed	p.E13K	1.000	182	0%	186	29%	6	16.6%	benign(0.139)	tolerated(0.06)	neutral(0.335)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13708203	13708203	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018027.3	-1	validated	p.S499	0.009	100	0%	78	32.1%	3	0%	-	-	-	NULL
SUV39H2	79723	genome.wustl.edu	37	10	14939107	14939107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024670.3	+1	provisional	p.R87I	0.994	210	0%	159	31.4%	0	-	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMPfam_Pre-SET,superfamily_SSF82199
SUV39H2	79723	genome.wustl.edu	37	10	14939434	14939434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024670.3	+1	provisional	p.R196Q	1.000	220	0%	148	27.7%	5	40%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
OLAH	55301	genome.wustl.edu	37	10	15113801	15113801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018324.2	+1	validated	p.V247I	0.000	76	0%	93	12.9%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_Thioesterase,superfamily_SSF53474
ACBD7	414149	genome.wustl.edu	37	10	15120970	15120970	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039844.2	-1	validated	p.E28*	1.000	333	0%	417	27.1%	2	50%	-	-	-	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
FAM171A1	221061	genome.wustl.edu	37	10	15255388	15255388	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010924.1	-1	validated	p.N733	0.827	80	0%	70	27.1%	0	-	-	-	-	HMMPfam_UPF0560
ITGA8	8516	genome.wustl.edu	37	10	15649742	15649742	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003638.1	-1	provisional	p.R566	0.001	534	0%	475	33.5%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
RSU1	6251	genome.wustl.edu	37	10	16794653	16794653	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012425.3	-1	reviewed	e6-1	1.000	200	0%	146	29.5%	0	-	-	-	-	-
CUBN	8029	genome.wustl.edu	37	10	17026169	17026169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081.3	-1	reviewed	p.R1487Q	0.991	223	0%	218	26.6%	0	-	benign(0.233)	deleterious(0.04)	neutral(0.372)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17088054	17088054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081.3	-1	reviewed	p.F1123L	0.988	214	0%	147	30.6%	0	-	possibly_damaging(0.869)	tolerated(0.09)	deleterious(0.633)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ST8SIA6	338596	genome.wustl.edu	37	10	17362928	17362928	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004470.1	-1	validated	p.L382	0.995	457	0%	387	23.3%	0	-	-	-	-	HMMPfam_Glyco_transf_29
MRC1	4360	genome.wustl.edu	37	10	17865381	17865381	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009567.1	+1	reviewed	p.E124*	1.000	366	0%	284	35.9%	0	-	-	-	-	HMMSmart_SM00458,superfamily_Ricin B-like lectins
CACNB2	783	genome.wustl.edu	37	10	18828572	18828572	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201596.2	+1	reviewed	p.Y634*	1.000	97	0%	138	27.5%	0	-	-	-	-	NULL
NEBL	10529	genome.wustl.edu	37	10	21120214	21120214	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006393.2	-1	reviewed	p.E528*	1.000	193	0%	169	29%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
C10orf113	387638	genome.wustl.edu	37	10	21414779	21414779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010896.2	-1	validated	p.K137N	0.000	419	0%	380	23.9%	0	-	unknown(0)	-	-	NULL
C10orf113	387638	genome.wustl.edu	37	10	21414799	21414799	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010896.2	-1	validated	p.E131*	0.055	404	0%	359	29%	0	-	-	-	-	NULL
C10orf140	387640	genome.wustl.edu	37	10	21804876	21804876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207371.3	-1	validated	p.S626A	0.028	52	1.9%	59	23.7%	0	-	benign(0.013)	tolerated(1)	neutral(0.001)	NULL
ARMC3	219681	genome.wustl.edu	37	10	23257260	23257260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173081.3	+1	validated	p.A253V	0.995	199	0%	105	30.5%	9	66.6%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC3	219681	genome.wustl.edu	37	10	23292194	23292194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173081.3	+1	validated	p.E528K	1.000	163	0%	105	15.2%	6	50%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	superfamily_ARM repeat
MSRB2	22921	genome.wustl.edu	37	10	23393076	23393076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012228.3	+1	validated	p.S41Y	0.089	280	0%	276	27.5%	47	59.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24762419	24762419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019590.3	+1	validated	p.R370I	1.000	246	0%	237	21.9%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24809053	24809053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019590.3	+1	validated	p.E727K	1.000	133	0%	95	18.9%	5	0%	possibly_damaging(0.835)	deleterious(0.01)	deleterious(0.724)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832448	24832448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019590.3	+1	validated	p.D1417N	0.856	269	0.4%	289	23.5%	27	29.6%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832559	24832559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019590.3	+1	validated	p.R1454W	1.000	288	0%	276	25%	27	37%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24835117	24835117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019590.3	+1	validated	p.S1899Y	1.000	192	0%	148	12.2%	108	15.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24908950	24908950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020824.3	-1	validated	p.S625Y	0.998	443	0.2%	389	31.9%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25312315	25312315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024838.4	+1	validated	p.D55Y	1.000	209	0%	141	19.9%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313397	25313397	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024838.4	+1	validated	p.F415	1.000	245	0%	184	25%	6	66.6%	-	-	-	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25755615	25755615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020752.2	+1	validated	p.T457	0.980	221	0%	106	21.7%	0	-	-	-	-	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25861613	25861613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020752.2	+1	validated	p.R517Q	1.000	244	0%	202	16.8%	1	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25883238	25883238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020752.2	+1	validated	p.R637I	0.027	176	0%	120	27.5%	0	-	benign(0.367)	tolerated(0.13)	neutral(0.369)	HMMPfam_7tm_3
MYO3A	53904	genome.wustl.edu	37	10	26457659	26457659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017433.4	+1	reviewed	p.H1044N	1.000	289	0%	253	25.3%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26465757	26465757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017433.4	+1	reviewed	p.S1474F	0.978	176	0%	110	20%	0	-	benign(0.273)	tolerated(0.12)	neutral(0.290)	NULL
APBB1IP	54518	genome.wustl.edu	37	10	26800746	26800746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019043.3	+1	validated	p.R201Q	1.000	100	0%	106	32.1%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RA,HMMSmart_RA
ABI1	10006	genome.wustl.edu	37	10	27040543	27040543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005470.3	-1	validated	p.K445N	0.998	138	0%	90	31.1%	8	75%	benign(0.148)	deleterious(0.01)	neutral(0.419)	superfamily_SH3-domain
ANKRD26	22852	genome.wustl.edu	37	10	27294557	27294557	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014915.2	-1	validated	p.E1699*	0.794	467	0%	342	29.8%	0	-	-	-	-	NULL
YME1L1	10730	genome.wustl.edu	37	10	27425211	27425211	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139312.1	-1	reviewed	p.F235	0.909	135	0%	130	30.8%	4	0%	-	-	-	NULL
MASTL	84930	genome.wustl.edu	37	10	27469976	27469976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032844.3	+1	reviewed	p.F786L	1.000	100	0%	93	18.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Kinase_like,HMMPfam_Pkinase
PTCHD3	374308	genome.wustl.edu	37	10	27700742	27700742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034842.3	-1	validated	p.C402*	0.992	106	0%	99	26.3%	0	-	-	-	-	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
PTCHD3	374308	genome.wustl.edu	37	10	27702546	27702546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034842.3	-1	validated	p.L212M	0.026	47	0%	47	31.9%	0	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Patched
ARMC4	55130	genome.wustl.edu	37	10	28196621	28196621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018076.2	-1	validated	p.A861T	1.000	157	0%	158	34.8%	2	100%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28196686	28196686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018076.2	-1	validated	p.G839E	1.000	163	0%	185	29.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28228883	28228883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018076.2	-1	validated	p.K680N	1.000	96	0%	58	24.1%	0	-	benign(0.007)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28283880	28283880	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018076.2	-1	validated	p.A64	0.000	133	0%	161	32.3%	0	-	-	-	-	NULL
WAC	51322	genome.wustl.edu	37	10	28897148	28897148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016628.3	+1	reviewed	p.S318Y	1.000	240	0%	226	33.2%	49	46.9%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
SVIL	6840	genome.wustl.edu	37	10	29747453	29747453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021738.2	-1	reviewed	p.I2156M	0.764	60	0%	82	30.5%	20	40%	benign(0.422)	deleterious(0.04)	deleterious(0.486)	superfamily_VHP Villin headpiece domain
SVIL	6840	genome.wustl.edu	37	10	29813538	29813538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021738.2	-1	reviewed	p.E817K	1.000	206	0.5%	181	25.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTPAP	55149	genome.wustl.edu	37	10	30638149	30638149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018109.3	-1	validated	p.R19I	0.001	54	0%	50	36%	1	100%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
LOC645954	645954	genome.wustl.edu	37	10	30992506	30992506	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017086.3	+1	model	NULL	1.000	389	0%	417	25.9%	0	-	-	-	-	-
ZEB1	6935	genome.wustl.edu	37	10	31809857	31809857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030751.5	+1	reviewed	p.L532I	0.999	349	0%	281	19.6%	0	-	possibly_damaging(0.886)	tolerated(0.27)	neutral(0.380)	NULL
PARD3	56288	genome.wustl.edu	37	10	34671821	34671821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019619.3	-1	validated	p.R349H	1.000	299	0%	269	24.9%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00228,superfamily_PDZ domain-like
PARD3	56288	genome.wustl.edu	37	10	34690760	34690760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019619.3	-1	validated	p.S267Y	1.000	242	0%	216	24.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PDZ domain-like
CCNY	219771	genome.wustl.edu	37	10	35858032	35858032	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145012.4	+1	validated	p.A320	0.072	33	0%	18	33.3%	23	17.3%	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37430937	37430937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.K315T	0.033	196	0%	214	36.4%	0	-	possibly_damaging(0.662)	tolerated(0.25)	neutral(0.271)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37431037	37431037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.E348D	0.294	214	0%	272	28.7%	0	-	benign(0.105)	deleterious(0.02)	neutral(0.391)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37442560	37442560	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.E534*	0.002	255	0%	275	11.3%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37478455	37478455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.E772*	0.002	174	0%	134	29.1%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37508061	37508061	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.E1085*	0.996	497	0%	544	25.4%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37508345	37508345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052997.2	+1	validated	p.M1179I	0.907	186	0%	240	32.5%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
LOC646360	646360	genome.wustl.edu	37	10	37626961	37626961	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078419.1	+1	model	NULL	0.061	127	0%	115	20%	0	-	-	-	-	-
LOC646360	646360	genome.wustl.edu	37	10	37627172	37627172	+	RNA	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078419.1	+1	model	NULL	0.986	134	0%	128	22.7%	0	-	-	-	-	-
ZNF33A	7581	genome.wustl.edu	37	10	38344399	38344399	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006954.1	+1	validated	p.S449	0.630	252	0%	279	16.1%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF33A	7581	genome.wustl.edu	37	10	38344938	38344938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006954.1	+1	validated	p.R629K	1.000	283	0%	335	33.1%	1	0%	benign(0.059)	tolerated(0.37)	neutral(0.023)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF33A	7581	genome.wustl.edu	37	10	38345155	38345155	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006954.1	+1	validated	p.F701	0.507	379	0%	351	32.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF33A	7581	genome.wustl.edu	37	10	38345342	38345342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006954.1	+1	validated	p.L764F	0.262	318	0%	304	16.8%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF37A	7587	genome.wustl.edu	37	10	38407035	38407035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007094.2	+1	validated	p.R319I	0.995	432	0.2%	422	24.4%	0	-	possibly_damaging(0.669)	deleterious(0.03)	deleterious(0.601)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC728064	728064	genome.wustl.edu	37	10	43191243	43191243	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_015196.2	-1	model	NULL	0.765	70	0%	65	26.2%	0	-	-	-	-	-
BMS1	9790	genome.wustl.edu	37	10	43289381	43289381	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014753.3	+1	reviewed	p.R391*	1.000	390	0%	324	21.3%	5	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43292423	43292423	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014753.3	+1	reviewed	p.F577	0.977	291	0%	289	13.1%	3	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RET	5979	genome.wustl.edu	37	10	43610018	43610018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020975.4	+1	reviewed	p.I657S	1.000	28	0%	35	31.4%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RET	5979	genome.wustl.edu	37	10	43620409	43620409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020975.4	+1	reviewed	p.E1006D	1.000	35	0%	26	19.2%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	superfamily_Kinase_like
HNRNPF	3185	genome.wustl.edu	37	10	43882253	43882253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098204.1	-1	reviewed	p.F360L	1.000	126	0%	169	27.8%	132	37.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF485	220992	genome.wustl.edu	37	10	44112444	44112444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145312.3	+1	validated	p.R318I	0.937	110	0%	120	32.5%	0	-	possibly_damaging(0.854)	tolerated(0.06)	deleterious(0.651)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFAND4	93550	genome.wustl.edu	37	10	46112007	46112007	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128324.1	-1	validated	p.N687	1.000	206	0%	186	22.6%	2	50%	-	-	-	HMMPfam_zf-AN1,HMMSmart_SM00154
ASAH2C	653365	genome.wustl.edu	37	10	48020500	48020500	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426610	-1	known	p.E336*	1.000	339	0%	428	31.1%	0	-	-	-	-	HMMPfam_Ceramidase_alk
ASAH2C	653365	genome.wustl.edu	37	10	48025344	48025344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426610	-1	known	p.A299V	1.000	332	0%	440	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ceramidase_alk
GDF10	2662	genome.wustl.edu	37	10	48428790	48428790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004962.2	-1	reviewed	p.R366W	0.986	42	0%	46	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN20C	653045	genome.wustl.edu	37	10	49275391	49275391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000316733	-1	known	p.E287D	1.000	530	0%	530	23.2%	0	-	possibly_damaging(0.472)	tolerated(0.56)	neutral(0.163)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
FRMPD2	143162	genome.wustl.edu	37	10	49371690	49371690	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001018071.3	-1	reviewed	p.E1188*	0.286	1051	0%	1221	22.7%	0	-	-	-	-	superfamily_PDZ domain-like
C10orf71	118461	genome.wustl.edu	37	10	50532549	50532549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135196.1	+1	validated	p.D653E	0.000	118	0%	94	35.1%	0	-	benign(0.001)	tolerated(1)	-	NULL
DRGX	644168	genome.wustl.edu	37	10	50598233	50598233	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080520.1	-1	provisional	p.V65	1.000	30	0%	26	15.4%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ERCC6	2074	genome.wustl.edu	37	10	50682263	50682263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000124.2	-1	reviewed	p.R803I	0.995	305	0%	232	29.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
ERCC6	2074	genome.wustl.edu	37	10	50686488	50686488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000124.2	-1	reviewed	p.V733A	1.000	396	0%	257	28%	1	0%	benign(0.095)	deleterious(0.01)	neutral(0.413)	HMMPfam_SNF2_N
CHAT	1103	genome.wustl.edu	37	10	50828618	50828618	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020549.4	+1	reviewed	p.I219	1.000	103	0%	168	29.8%	0	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CHAT	1103	genome.wustl.edu	37	10	50835705	50835705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020549.4	+1	reviewed	p.L329M	1.000	140	0%	145	26.9%	0	-	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CHAT	1103	genome.wustl.edu	37	10	50856565	50856565	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020549.4	+1	reviewed	p.R432	0.982	13	0%	25	28%	0	-	-	-	-	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
PARG	8505	genome.wustl.edu	37	10	51093279	51093279	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003631.2	-1	reviewed	p.I600	0.982	288	0%	240	24.2%	1	100%	-	-	-	HMMPfam_PARG_cat
NCOA4	8031	genome.wustl.edu	37	10	51586398	51586398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145260.1	+1	reviewed	p.R625Q	1.000	334	0%	261	20.3%	37	18.9%	unknown(0)	-	-	NULL
PRKG1	5592	genome.wustl.edu	37	10	53814262	53814262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006258.2	+1	validated	p.E261K	1.000	204	0%	127	25.2%	0	-	benign(0.022)	tolerated(0.12)	neutral(0.262)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PRKG1	5592	genome.wustl.edu	37	10	54040579	54040579	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006258.2	+1	validated	p.F478L	1.000	161	0%	131	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PCDH15	65217	genome.wustl.edu	37	10	55569246	55569246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142769.1	-1	reviewed	p.E1527*	0.990	310	0%	269	20.4%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55626507	55626507	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142763.1	-1	reviewed	p.I1209	1.000	307	0%	260	31.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55913042	55913042	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142763.1	-1	reviewed	p.V539	0.019	263	0%	191	27.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
IPMK	253430	genome.wustl.edu	37	10	59986854	59986854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152230.3	-1	provisional	p.K108T	1.000	257	0%	208	25.5%	0	-	benign(0.036)	tolerated(0.23)	neutral(0.044)	HMMPfam_IPK,superfamily_SSF56104
BICC1	80114	genome.wustl.edu	37	10	60573646	60573646	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080512.1	+1	reviewed	p.S811	0.108	278	0.4%	258	25.6%	0	-	-	-	-	NULL
PHYHIPL	84457	genome.wustl.edu	37	10	61005146	61005146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032439.3	+1	validated	p.K309T	1.000	247	0%	238	30.3%	0	-	benign(0.033)	tolerated(0.39)	neutral(0.018)	NULL
FAM13C	220965	genome.wustl.edu	37	10	61014093	61014093	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000422313	-1	known	p.T449	0.000	274	0%	237	27.8%	0	-	-	-	-	NULL
FAM13C	220965	genome.wustl.edu	37	10	61043243	61043243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000442566	-1	known	p.E201K	0.996	233	0.4%	172	31.4%	0	-	benign(0.35)	deleterious(0.05)	neutral(0.456)	NULL
CCDC6	8030	genome.wustl.edu	37	10	61572397	61572397	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005436.3	-1	validated	p.L281	0.998	261	0%	184	23.4%	1	0%	-	-	-	HMMPfam_DUF2046
ANK3	288	genome.wustl.edu	37	10	61832834	61832834	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020987.2	-1	reviewed	p.L2602R	0.998	183	0%	232	15.1%	0	-	probably_damaging(0.981)	-	-	NULL
TMEM26	219623	genome.wustl.edu	37	10	63170449	63170449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178505.6	-1	validated	p.F246L	0.956	77	0%	58	25.9%	0	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Tmem26
ARID5B	84159	genome.wustl.edu	37	10	63845519	63845519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032199.2	+1	validated	p.I420V	1.000	721	0%	644	28.9%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	superfamily_ARID-like
ARID5B	84159	genome.wustl.edu	37	10	63851571	63851571	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032199.2	+1	validated	p.P783	0.322	286	0%	318	24.8%	1	100%	-	-	-	NULL
RTKN2	219790	genome.wustl.edu	37	10	63958126	63958126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145307.2	-1	provisional	p.F457L	0.995	245	0%	218	20.6%	1	0%	benign(0.008)	tolerated(0.29)	neutral(0.029)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64949050	64949050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032776.1	-1	validated	p.N2150H	0.002	265	0%	178	37.6%	1	100%	benign(0.257)	deleterious(0.01)	neutral(0.432)	NULL
LRRTM3	347731	genome.wustl.edu	37	10	68687469	68687469	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178011.3	+1	validated	p.I265	0.545	363	0%	224	23.7%	0	-	-	-	-	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
LRRTM3	347731	genome.wustl.edu	37	10	68857440	68857440	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178011.3	+1	validated	p.S544	1.000	226	0%	288	27.8%	0	-	-	-	-	NULL
CTNNA3	29119	genome.wustl.edu	37	10	69366751	69366751	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127384.1	-1	validated	p.S52	0.242	262	0%	294	23.1%	0	-	-	-	-	HMMPfam_Vinculin
SIRT1	23411	genome.wustl.edu	37	10	69672431	69672431	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142498.1	+1	reviewed	p.E225*	1.000	123	0%	114	30.7%	2	0%	-	-	-	NULL
PBLD	64081	genome.wustl.edu	37	10	70045062	70045062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033083.1	-1	validated	p.S266L	0.000	116	0%	104	14.4%	0	-	unknown(0)	deleterious(0.02)	-	superfamily_Diaminopimelate epimerase-like
TET1	80312	genome.wustl.edu	37	10	70333495	70333495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030625.2	+1	validated	p.Q467P	0.000	94	0%	133	12%	0	-	benign(0.004)	tolerated(1)	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70549564	70549564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018237.2	+1	validated	p.E1095D	0.998	73	0%	97	33%	6	50%	benign(0.264)	tolerated(0.38)	neutral(0.045)	NULL
STOX1	219736	genome.wustl.edu	37	10	70645763	70645763	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130161.2	+1	reviewed	p.L737	1.000	162	0%	129	11.6%	7	57.1%	-	-	-	NULL
STOX1	219736	genome.wustl.edu	37	10	70652406	70652406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130161.2	+1	reviewed	p.F962V	1.000	124	0%	113	28.3%	7	100%	possibly_damaging(0.658)	deleterious(0.01)	deleterious(0.638)	NULL
DDX50	79009	genome.wustl.edu	37	10	70666524	70666524	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024045.1	+1	reviewed	p.E49*	1.000	274	0%	214	29%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX50	79009	genome.wustl.edu	37	10	70695814	70695814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024045.1	+1	reviewed	p.S525Y	1.000	93	0%	127	26.8%	14	21.4%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX21	9188	genome.wustl.edu	37	10	70723156	70723156	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004728.2	+1	reviewed	p.S239	1.000	136	0%	119	33.6%	3	66.6%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1279	26128	genome.wustl.edu	37	10	70748592	70748592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015634.3	+1	reviewed	p.A2T	1.000	53	0%	49	34.7%	4	50%	possibly_damaging(0.677)	tolerated(0.05)	deleterious(0.587)	NULL
SUPV3L1	6832	genome.wustl.edu	37	10	70949113	70949113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003171.3	+1	provisional	p.Y221*	1.000	150	0%	173	22.5%	0	-	-	-	-	superfamily_SSF52540
HKDC1	80201	genome.wustl.edu	37	10	70992818	70992818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025130.3	+1	validated	p.D142Y	0.089	91	0%	70	22.9%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain
HKDC1	80201	genome.wustl.edu	37	10	71005961	71005961	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025130.3	+1	validated	p.I334	0.638	103	0%	83	28.9%	1	100%	-	-	-	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
KIAA1274	27143	genome.wustl.edu	37	10	72324140	72324140	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426268	+1	known	p.A142T	1.000	34	0%	44	31.8%	34	55.8%	-	-	-	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72489089	72489089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139155.2	+1	reviewed	p.I304V	1.000	76	0%	70	25.7%	0	-	benign(0.012)	tolerated(0.81)	neutral(0.001)	HMMPfam_Reprolysin,superfamily_SSF55486
SLC29A3	55315	genome.wustl.edu	37	10	73121791	73121791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000373189	+1	known	p.S285L	0.000	103	0%	131	36.6%	1	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Nucleoside_tran
MICU1	10367	genome.wustl.edu	37	10	74326518	74326518	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006077.2	-1	validated	p.E12*	1.000	61	0%	82	19.5%	13	46.1%	-	-	-	NULL
ECD	11319	genome.wustl.edu	37	10	74908049	74908049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135752.1	-1	validated	p.K342N	0.944	119	0%	144	29.2%	10	30%	possibly_damaging(0.659)	tolerated(0.1)	deleterious(0.519)	HMMPfam_SGT1
TTC18	118491	genome.wustl.edu	37	10	75114497	75114497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145170.3	-1	validated	p.D20N	1.000	102	0%	105	35.2%	0	-	benign(0.023)	tolerated(0.51)	neutral(0.010)	NULL
USP54	159195	genome.wustl.edu	37	10	75276232	75276232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152586.3	-1	provisional	p.E1318K	1.000	97	0%	120	32.5%	4	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MYOZ1	58529	genome.wustl.edu	37	10	75399715	75399715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021245.2	-1	provisional	p.E21K	1.000	102	0%	159	23.9%	0	-	benign(0.195)	tolerated(0.12)	neutral(0.279)	HMMPfam_Calsarcin
SYNPO2L	79933	genome.wustl.edu	37	10	75406933	75406933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114133.1	-1	validated	p.R826Q	0.711	49	0%	58	22.4%	0	-	probably_damaging(0.956)	tolerated(0.45)	neutral(0.412)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75407664	75407664	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114133.1	-1	validated	p.I582	0.972	37	0%	41	9.8%	0	-	-	-	-	NULL
SEC24C	9632	genome.wustl.edu	37	10	75525238	75525238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004922.2	+1	reviewed	p.E419D	1.000	67	0%	161	24.8%	9	33.3%	possibly_damaging(0.797)	tolerated(0.21)	neutral(0.343)	superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24
ADK	132	genome.wustl.edu	37	10	76153931	76153931	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006721.2	+1	reviewed	p.T102	0.669	348	0.3%	240	26.3%	5	0%	-	-	-	HMMPfam_PfkB,superfamily_Ribokinase-like
DUSP13	51207	genome.wustl.edu	37	10	76857554	76857554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007273.1	-1	reviewed	p.S123L	0.597	18	0%	26	42.3%	0	-	benign(0.033)	deleterious(0.05)	neutral(0.347)	NULL
SAMD8	142891	genome.wustl.edu	37	10	76910713	76910713	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144660.2	+1	validated	p.R143*	0.332	139	0%	173	23.7%	0	-	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78778781	78778781	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014797.2	-1	reviewed	p.E673*	1.000	85	0%	71	32.4%	0	-	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	79010953	79010953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014797.2	-1	reviewed	p.N201T	1.000	96	0%	95	23.2%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_Voltage-gated potassium channels
POLR3A	11128	genome.wustl.edu	37	10	79743720	79743720	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007055.3	-1	validated	p.L1129	0.490	69	0%	67	22.4%	0	-	-	-	-	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
FAM22B	729262	genome.wustl.edu	37	10	81463739	81463739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000429828	+1	known	p.S125L	0.047	143	0%	102	19.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NRG3	10718	genome.wustl.edu	37	10	84745221	84745221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010848.3	+1	reviewed	p.E651K	1.000	155	0%	98	18.4%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
CDHR1	92211	genome.wustl.edu	37	10	85956268	85956268	+	Silent	SNP	C	C	T	rs12781048	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033100.2	+1	reviewed	p.H53	0.068	150	0%	104	35.6%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
CDHR1	92211	genome.wustl.edu	37	10	85972925	85972925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033100.2	+1	reviewed	p.D621N	1.000	163	0%	186	31.7%	2	100%	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LRIT2	340745	genome.wustl.edu	37	10	85984799	85984799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017924.2	-1	validated	p.R61I	1.000	223	0%	166	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
WAPAL	23063	genome.wustl.edu	37	10	88260094	88260094	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015045.2	-1	validated	p.T302	0.800	400	0%	292	28.1%	1	100%	-	-	-	NULL
BMPR1A	657	genome.wustl.edu	37	10	88672088	88672088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004329.2	+1	reviewed	p.D208Y	1.000	96	0%	115	28.7%	4	25%	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like
FAM35A	54537	genome.wustl.edu	37	10	88911985	88911985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019054.2	+1	validated	p.Q292K	0.000	198	0%	246	20.3%	0	-	benign(0.025)	tolerated(0.18)	neutral(0.057)	NULL
FAM35A	54537	genome.wustl.edu	37	10	88912240	88912240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019054.2	+1	validated	p.K377Q	0.022	271	0%	294	22.4%	2	0%	probably_damaging(0.992)	tolerated(0.32)	deleterious(0.472)	NULL
FAM35A	54537	genome.wustl.edu	37	10	88939925	88939925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019054.2	+1	validated	p.S686I	0.003	359	0%	282	31.9%	3	33.3%	possibly_damaging(0.731)	deleterious(0.03)	deleterious(0.631)	NULL
ATAD1	84896	genome.wustl.edu	37	10	89514551	89514551	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032810.2	-1	provisional	p.E327*	1.000	68	0%	68	23.5%	15	26.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371953	+1	known	p.R130Q	1.000	374	0%	342	32.7%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711983	89711983	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371953	+1	known	p.E201*	1.000	446	0%	407	34.2%	12	8.3%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720749	89720749	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371953	+1	known	p.I300	1.000	362	0%	323	26.6%	7	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPN	643418	genome.wustl.edu	37	10	90524354	90524354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102469.1	+1	validated	p.F138L	1.000	169	0%	161	19.3%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
STAMBPL1	57559	genome.wustl.edu	37	10	90676453	90676453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020799.2	+1	provisional	p.T307N	0.993	220	0%	210	31.4%	0	-	probably_damaging(0.993)	tolerated(0.28)	deleterious(0.482)	HMMPfam_Mov34,HMMSmart_SM00232,superfamily_JAB1/MPN domain
FAS	355	genome.wustl.edu	37	10	90762944	90762944	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000043.3	+1	reviewed	p.C63	0.932	101	0%	79	25.3%	16	50%	-	-	-	HMMSmart_SM00208,superfamily_TNF receptor-like
LIPA	3988	genome.wustl.edu	37	10	90983450	90983450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000235.2	-1	reviewed	p.N271K	0.998	254	0%	263	22.1%	3	33.3%	unknown(0)	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
SLC16A12	387700	genome.wustl.edu	37	10	91198761	91198761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213606.3	-1	validated	p.L180I	1.000	208	0.5%	189	21.7%	0	-	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIF20B	9585	genome.wustl.edu	37	10	91468996	91468996	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016195.2	+1	validated	p.E74*	1.000	173	0%	182	32.4%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91497373	91497373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016195.2	+1	validated	p.K885N	0.234	232	0%	146	24.7%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91533786	91533786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016195.2	+1	validated	p.R1775Q	0.851	204	0%	281	32.4%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ANKRD1	27063	genome.wustl.edu	37	10	92679017	92679017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014391.2	-1	reviewed	p.K72N	1.000	113	0%	89	30.3%	0	-	benign(0.023)	tolerated(0.06)	neutral(0.324)	superfamily_ANK
PCGF5	84333	genome.wustl.edu	37	10	93038067	93038067	+	Silent	SNP	C	C	T	rs191746944	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032373.3	+1	provisional	p.F255	0.653	209	0%	111	27%	2	50%	-	-	-	NULL
HECTD2	143279	genome.wustl.edu	37	10	93221064	93221064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182765.3	+1	validated	p.F154C	1.000	379	0.3%	399	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IDE	3416	genome.wustl.edu	37	10	94247044	94247044	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004969.3	-1	reviewed	p.F522C	1.000	155	0%	166	34.9%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HHEX	3087	genome.wustl.edu	37	10	94454328	94454328	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002729.4	+1	reviewed	p.E206*	1.000	120	0%	92	20.7%	1	0%	-	-	-	NULL
EXOC6	54536	genome.wustl.edu	37	10	94653276	94653276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019053.4	+1	reviewed	p.K91T	1.000	466	0%	379	21.6%	0	-	benign(0.031)	deleterious(0.03)	neutral(0.366)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94669348	94669348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019053.4	+1	reviewed	p.R208Q	1.000	301	0%	214	64%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94714486	94714486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019053.4	+1	reviewed	p.I542M	0.984	138	0%	142	12%	2	0%	possibly_damaging(0.789)	deleterious(0.02)	deleterious(0.679)	HMMPfam_Sec15
MYOF	26509	genome.wustl.edu	37	10	95147624	95147624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013451.3	-1	reviewed	p.T543I	1.000	372	0%	319	24.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP55	55165	genome.wustl.edu	37	10	95275259	95275259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127182.1	+1	validated	p.T209M	0.024	238	0%	234	24.4%	3	0%	benign(0.389)	deleterious(0.05)	deleterious(0.470)	NULL
PDE6C	5146	genome.wustl.edu	37	10	95394584	95394584	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006204.3	+1	reviewed	p.E397*	1.000	201	0%	158	22.2%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PDE6C	5146	genome.wustl.edu	37	10	95399952	95399952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006204.3	+1	reviewed	p.E536D	1.000	319	0%	295	23.4%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_SSF109604
PDE6C	5146	genome.wustl.edu	37	10	95400207	95400207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006204.3	+1	reviewed	p.V544I	1.000	314	0%	288	29.9%	0	-	possibly_damaging(0.886)	deleterious(0.05)	deleterious(0.692)	superfamily_SSF109604
PDE6C	5146	genome.wustl.edu	37	10	95400718	95400718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006204.3	+1	reviewed	p.F593L	0.998	197	0%	153	34.6%	0	-	benign(0.032)	tolerated(1)	neutral(0.002)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
LGI1	9211	genome.wustl.edu	37	10	95557262	95557262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005097.2	+1	reviewed	p.K459T	1.000	142	0%	123	23.6%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_EPTP
LGI1	9211	genome.wustl.edu	37	10	95557407	95557407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005097.2	+1	reviewed	p.E507D	0.950	206	0%	157	23.6%	0	-	benign(0.122)	tolerated(0.42)	neutral(0.024)	NULL
PLCE1	51196	genome.wustl.edu	37	10	95790940	95790940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016341.3	+1	reviewed	p.R46Q	0.000	289	0%	222	33.8%	0	-	benign(0)	tolerated(1)	-	NULL
PLCE1	51196	genome.wustl.edu	37	10	95848918	95848918	+	Missense_Mutation	SNP	G	G	A	rs144179807	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000371375	+1	known	p.V23M	1.000	138	0%	117	27.4%	0	-	possibly_damaging(0.449)	-	-	NULL
PLCE1	51196	genome.wustl.edu	37	10	95993816	95993816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016341.3	+1	reviewed	p.R654I	1.000	100	0%	68	35.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
PLCE1	51196	genome.wustl.edu	37	10	96039634	96039634	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016341.3	+1	reviewed	p.D1587	0.999	132	0%	117	27.4%	3	100%	-	-	-	superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96068403	96068403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016341.3	+1	reviewed	p.N1984H	0.998	207	0%	219	26.9%	0	-	probably_damaging(0.96)	tolerated(0.4)	neutral(0.419)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLCE1	51196	genome.wustl.edu	37	10	96081726	96081726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016341.3	+1	reviewed	p.F2137L	1.000	82	0%	85	23.5%	13	7.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RA,HMMSmart_SM00314
NOC3L	64318	genome.wustl.edu	37	10	96121506	96121506	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022451.9	-1	provisional	p.E45*	1.000	257	0%	293	33.8%	0	-	-	-	-	NULL
CYP2C8	1558	genome.wustl.edu	37	10	96824600	96824600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000770.3	-1	reviewed	p.R200I	0.000	225	0%	207	28%	0	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_p450,superfamily_Cytochrome_P450
C10orf129	142827	genome.wustl.edu	37	10	96970509	96970509	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207321.2	+1	validated	p.Y238*	0.006	254	0%	251	34.7%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SORBS1	10580	genome.wustl.edu	37	10	97114661	97114661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034954.1	-1	validated	p.R731Q	1.000	103	0%	71	29.6%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
SORBS1	10580	genome.wustl.edu	37	10	97135757	97135757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034954.1	-1	validated	p.F570L	1.000	183	0%	161	26.7%	0	-	probably_damaging(0.998)	tolerated(0.21)	deleterious(0.518)	NULL
SORBS1	10580	genome.wustl.edu	37	10	97192255	97192255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001034954.1	-1	validated	p.S84N	0.052	93	0%	101	31.7%	0	-	benign(0.014)	deleterious(0.05)	neutral(0.346)	NULL
ENTPD1	953	genome.wustl.edu	37	10	97607350	97607350	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001776.5	+1	validated	p.N321H	0.965	286	0%	238	25.6%	12	50%	possibly_damaging(0.621)	tolerated(0.05)	deleterious(0.562)	HMMPfam_GDA1_CD39
TLL2	7093	genome.wustl.edu	37	10	98133461	98133461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012465.3	-1	validated	p.G852S	1.000	73	0%	53	26.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
TLL2	7093	genome.wustl.edu	37	10	98138842	98138842	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012465.3	-1	validated	p.D734	0.993	131	0%	144	22.2%	0	-	-	-	-	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
TM9SF3	56889	genome.wustl.edu	37	10	98336521	98336521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020123.3	-1	validated	p.E56D	1.000	284	0%	306	31.4%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EMP70
LCOR	84458	genome.wustl.edu	37	10	98708916	98708916	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032440.3	+1	validated	p.P34	1.000	276	0%	325	28.3%	0	-	-	-	-	NULL
C10orf12	26148	genome.wustl.edu	37	10	98743206	98743206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015652.2	+1	predicted	p.E687K	0.000	124	0%	126	20.6%	2	100%	possibly_damaging(0.571)	tolerated(0.28)	neutral(0.227)	NULL
SLIT1	6585	genome.wustl.edu	37	10	98806769	98806769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003061.2	-1	validated	p.K563T	1.000	40	0%	35	25.7%	0	-	benign(0.076)	tolerated(0.13)	neutral(0.258)	superfamily_L domain-like
ANKRD2	26287	genome.wustl.edu	37	10	99342384	99342384	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020349.2	+1	validated	p.D286	0.827	105	0%	86	29.1%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C10orf62	414157	genome.wustl.edu	37	10	99350194	99350194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009997.2	+1	validated	p.K180N	0.020	85	0%	99	19.2%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
C10orf28	27291	genome.wustl.edu	37	10	99991407	99991407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014472.4	+1	validated	p.H642Y	1.000	282	0.4%	287	35.9%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PYROXD2	84795	genome.wustl.edu	37	10	100159990	100159990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032709.2	-1	validated	p.R114*	1.000	27	0%	22	27.3%	3	0%	-	-	-	superfamily_SSF51905
HPSE2	60495	genome.wustl.edu	37	10	100242490	100242490	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021828.4	-1	reviewed	p.R506*	1.000	296	0%	345	28.1%	0	-	-	-	-	NULL
ENTPD7	57089	genome.wustl.edu	37	10	101448494	101448494	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020354.3	+1	validated	p.F232	0.921	462	0%	400	35%	0	-	-	-	-	HMMPfam_GDA1_CD39
CUTC	51076	genome.wustl.edu	37	10	101503026	101503026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015960.2	+1	validated	p.R104C	1.000	162	0%	214	13.6%	31	6.4%	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMPfam_CutC,superfamily_CutC-like (Pfam 03932)
CUTC	51076	genome.wustl.edu	37	10	101503797	101503797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015960.2	+1	validated	p.I136S	0.944	77	0%	103	22.3%	35	45.7%	benign(0.094)	tolerated(0.29)	neutral(0.036)	HMMPfam_CutC,superfamily_CutC-like (Pfam 03932)
ABCC2	1244	genome.wustl.edu	37	10	101553386	101553386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000392.3	+1	reviewed	p.L138F	1.000	151	0%	154	36.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ABCC2	1244	genome.wustl.edu	37	10	101553752	101553752	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000392.3	+1	reviewed	p.S191*	0.946	118	0%	126	26.2%	0	-	-	-	-	NULL
ABCC2	1244	genome.wustl.edu	37	10	101559008	101559008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000392.3	+1	reviewed	p.D304E	0.962	552	0%	661	26%	0	-	benign(0.317)	tolerated(0.96)	neutral(0.099)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101567902	101567902	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000392.3	+1	reviewed	p.Q577H	0.913	234	0%	213	31%	1	100%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101594172	101594172	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000392.3	+1	reviewed	p.S1098	0.879	148	0%	165	32.1%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNMBP	23268	genome.wustl.edu	37	10	101640056	101640056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015221.2	-1	validated	p.D1354N	0.998	79	0%	70	30%	11	63.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SH3-domain
DNMBP	23268	genome.wustl.edu	37	10	101716260	101716260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015221.2	-1	validated	p.S324Y	0.002	168	0%	212	38.2%	1	0%	possibly_damaging(0.708)	tolerated(0.17)	neutral(0.315)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101716662	101716662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015221.2	-1	validated	p.R190Q	1.000	285	0%	277	34.7%	0	-	possibly_damaging(0.679)	deleterious(0.03)	deleterious(0.607)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CHUK	1147	genome.wustl.edu	37	10	101969506	101969506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001278.3	-1	reviewed	p.S325Y	1.000	123	0%	114	27.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Protein kinase-like (PK-like)
PKD2L1	9033	genome.wustl.edu	37	10	102059425	102059425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016112.2	-1	reviewed	p.S134P	1.000	155	0%	230	30.4%	0	-	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
WNT8B	7479	genome.wustl.edu	37	10	102240838	102240838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003393.3	+1	reviewed	p.F109V	1.000	156	0%	174	29.9%	0	-	benign(0.086)	tolerated(0.11)	neutral(0.278)	HMMPfam_wnt,HMMSmart_WNT1
SEC31B	25956	genome.wustl.edu	37	10	102269199	102269199	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015490.3	-1	reviewed	p.G91	0.998	80	0%	76	23.7%	1	0%	-	-	-	superfamily_WD40 repeat-like
FAM178A	55719	genome.wustl.edu	37	10	102685862	102685862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370271	+1	known	p.H710N	0.000	46	0%	35	25.7%	0	-	unknown(0)	-	-	NULL
BTRC	8945	genome.wustl.edu	37	10	103291047	103291047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033637.2	+1	reviewed	p.S266Y	1.000	254	0%	289	35.3%	0	-	possibly_damaging(0.713)	tolerated(0.16)	neutral(0.317)	superfamily_F-box domain
PPRC1	23082	genome.wustl.edu	37	10	103901697	103901697	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015062.3	+1	reviewed	p.S1144	0.240	42	0%	58	12.1%	16	18.7%	-	-	-	NULL
NOLC1	9221	genome.wustl.edu	37	10	103920363	103920363	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004741.3	+1	validated	p.T418	0.001	111	0%	103	38.8%	37	32.4%	-	-	-	NULL
NFKB2	4791	genome.wustl.edu	37	10	104160067	104160067	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077494.1	+1	validated	p.Q539	0.963	72	0%	71	40.8%	265	52.8%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LOC100289608	100289608	genome.wustl.edu	37	10	104605688	104605688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343032.1	+1	model	p.K37T	0.987	90	0%	113	11.5%	1	0%	-	-	-	NULL
CNNM2	54805	genome.wustl.edu	37	10	104816706	104816706	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017649.3	+1	validated	p.F686	1.000	411	0%	377	26.8%	0	-	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105200186	105200186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014976.1	+1	validated	p.K1430Q	0.001	119	0%	97	28.9%	7	57.1%	benign(0.259)	tolerated(0.59)	neutral(0.032)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105362581	105362581	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000420222	-1	known	p.G725*	1.000	100	0%	110	31.8%	2	0%	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	NULL
SLK	9748	genome.wustl.edu	37	10	105763002	105763002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014720.2	+1	provisional	p.S689*	0.104	252	0%	231	32%	1	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105831820	105831820	+	Nonsense_Mutation	SNP	G	G	A	rs121912774		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000494.3	-1	reviewed	p.R145*	1.000	77	0%	61	31.1%	0	-	-	-	-	NULL
SFR1	119392	genome.wustl.edu	37	10	105882837	105882837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002759.1	+1	validated	p.R43Q	0.606	208	0.5%	170	27.1%	2	0%	possibly_damaging(0.559)	tolerated(0.55)	neutral(0.198)	HMMPfam_Mei5
CCDC147	159686	genome.wustl.edu	37	10	106207464	106207464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008723.1	+1	validated	p.E755D	1.000	109	0%	100	31%	0	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108337011	108337011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013031.1	-1	reviewed	p.T1189A	1.000	269	0%	219	26.5%	0	-	possibly_damaging(0.647)	deleterious(0.03)	deleterious(0.592)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108521351	108521351	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013031.1	-1	reviewed	p.F318	0.989	197	0%	140	23.6%	0	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
XPNPEP1	7511	genome.wustl.edu	37	10	111667493	111667493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020383.3	-1	reviewed	p.E25K	1.000	214	0%	252	27.4%	11	9%	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
ADD3	120	genome.wustl.edu	37	10	111879001	111879001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016824.3	+1	reviewed	p.I250M	1.000	236	0%	230	35.7%	11	27.2%	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
SHOC2	8036	genome.wustl.edu	37	10	112724366	112724366	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007373.3	+1	reviewed	p.K84Q	1.000	355	0%	222	25.7%	0	-	possibly_damaging(0.917)	tolerated(0.23)	neutral(0.409)	superfamily_L domain-like
SHOC2	8036	genome.wustl.edu	37	10	112767343	112767343	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007373.3	+1	reviewed	p.E406*	1.000	201	0%	159	28.9%	5	20%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
TCF7L2	6934	genome.wustl.edu	37	10	114925397	114925397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030756.4	+1	reviewed	p.S486L	1.000	129	0%	194	28.4%	14	35.7%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
NRAP	4892	genome.wustl.edu	37	10	115401186	115401186	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198060.2	-1	validated	p.E421*	1.000	179	0%	136	28.7%	0	-	-	-	-	HMMSmart_SM00227
DCLRE1A	9937	genome.wustl.edu	37	10	115612808	115612808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014881.3	-1	provisional	p.S45*	0.254	291	0%	227	20.7%	0	-	-	-	-	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115639384	115639384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198514.2	+1	provisional	p.S280Y	1.000	130	0%	171	32.2%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_NHL,superfamily_NHL repeat
NHLRC2	374354	genome.wustl.edu	37	10	115662233	115662233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198514.2	+1	provisional	p.L459V	1.000	399	0%	271	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NHL repeat
C10orf118	55088	genome.wustl.edu	37	10	115885670	115885670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018017.2	-1	validated	p.T863M	1.000	117	0%	116	25.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
C10orf118	55088	genome.wustl.edu	37	10	115887322	115887322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018017.2	-1	validated	p.R764I	1.000	102	0%	116	34.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116200819	116200819	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000392955	-1	known	p.S546L	0.996	10	0%	18	22.2%	13	30.7%	-	-	-	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116251562	116251562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002313.5	-1	reviewed	p.M324L	1.000	184	0%	187	29.4%	12	50%	possibly_damaging(0.871)	deleterious(0.05)	deleterious(0.684)	HMMPfam_LIM,HMMSmart_SM00132
ATRNL1	26033	genome.wustl.edu	37	10	117001450	117001450	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207303.2	+1	validated	p.H541	1.000	144	0%	107	16.8%	0	-	-	-	-	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
ATRNL1	26033	genome.wustl.edu	37	10	117093929	117093929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207303.2	+1	validated	p.A1059T	1.000	238	0%	149	17.4%	0	-	possibly_damaging(0.803)	tolerated(0.08)	deleterious(0.603)	PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
ATRNL1	26033	genome.wustl.edu	37	10	117278829	117278829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207303.2	+1	validated	p.F1237L	1.000	110	0%	73	17.8%	0	-	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	NULL
GFRA1	2674	genome.wustl.edu	37	10	117824034	117824034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005264.4	-1	reviewed	p.L425I	0.300	93	0%	79	17.7%	1	0%	benign(0.026)	tolerated(0.13)	neutral(0.254)	NULL
C10orf96	374355	genome.wustl.edu	37	10	118138853	118138853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198515.2	+1	validated	p.L254I	0.999	67	0%	71	25.4%	0	-	possibly_damaging(0.778)	tolerated(0.54)	neutral(0.298)	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118220594	118220594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001011709.2	+1	validated	p.L228F	0.002	231	0%	105	24.8%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
KIAA1598	57698	genome.wustl.edu	37	10	118680973	118680973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127211.1	-1	validated	p.K389N	1.000	120	0%	104	21.2%	14	28.5%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
VAX1	11023	genome.wustl.edu	37	10	118891790	118891790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199131.2	-1	reviewed	p.R164M	0.001	66	0%	71	31%	0	-	unknown(0)	deleterious(0.01)	-	NULL
KCNK18	338567	genome.wustl.edu	37	10	118969585	118969585	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181840.1	+1	provisional	p.F310	0.293	124	0%	124	58.9%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
SLC18A2	6571	genome.wustl.edu	37	10	119003745	119003745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003054.4	+1	reviewed	p.V129M	1.000	52	0%	57	29.8%	0	-	possibly_damaging(0.747)	tolerated(0.08)	deleterious(0.574)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PDZD8	118987	genome.wustl.edu	37	10	119049715	119049715	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173791.3	-1	provisional	p.R415*	1.000	202	0%	147	32%	10	80%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
RAB11FIP2	22841	genome.wustl.edu	37	10	119798665	119798665	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014904.2	-1	validated	p.E361	1.000	272	0%	278	23.4%	0	-	-	-	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120825029	120825029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003750.2	-1	validated	p.R335H	1.000	104	0%	104	23.1%	10	40%	unknown(0)	tolerated(0.55)	-	NULL
GRK5	2869	genome.wustl.edu	37	10	121212755	121212755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005308.2	+1	reviewed	p.K547N	1.000	47	0%	59	18.6%	3	0%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
GRK5	2869	genome.wustl.edu	37	10	121214503	121214503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005308.2	+1	reviewed	p.S566L	0.993	25	0%	35	34.3%	3	0%	unknown(0)	tolerated(0.24)	-	NULL
INPP5F	22876	genome.wustl.edu	37	10	121551404	121551404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014937.2	+1	reviewed	p.E156D	1.000	123	0%	124	26.6%	1	100%	possibly_damaging(0.47)	tolerated(0.58)	neutral(0.160)	HMMPfam_Syja_N
WDR11	55717	genome.wustl.edu	37	10	122619707	122619707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018117.11	+1	reviewed	p.D147N	1.000	110	0%	126	25.4%	2	50%	probably_damaging(0.982)	tolerated(0.5)	neutral(0.436)	superfamily_WD40_like
ARMS2	387715	genome.wustl.edu	37	10	124214438	124214438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099667.1	+1	reviewed	p.M65I	0.001	53	0%	43	30.2%	0	-	benign(0.002)	-	-	NULL
DMBT1	1755	genome.wustl.edu	37	10	124339319	124339319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007329.2	+1	reviewed	p.R302H	0.001	217	0%	209	18.2%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124343857	124343857	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007329.2	+1	reviewed	p.T470	0.000	318	0%	306	6.2%	0	-	-	-	-	superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124348593	124348593	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007329.2	+1	reviewed	p.V639	0.866	332	0%	342	21.3%	0	-	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124380756	124380756	+	Missense_Mutation	SNP	G	G	A	rs111726992		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007329.2	+1	reviewed	p.R1694Q	0.053	241	0%	186	24.2%	0	-	probably_damaging(0.963)	tolerated(0.3)	neutral(0.434)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124389947	124389947	+	Missense_Mutation	SNP	G	G	A	rs7099177	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007329.2	+1	reviewed	p.R1860Q	0.038	106	0%	120	35%	0	-	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUZD1	50624	genome.wustl.edu	37	10	124596456	124596456	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022034.4	-1	provisional	p.F236	0.005	85	0%	115	36.5%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C10orf88	80007	genome.wustl.edu	37	10	124697414	124697414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024942.3	-1	validated	p.L304F	0.011	261	0%	270	31.5%	1	0%	possibly_damaging(0.808)	tolerated(0.07)	deleterious(0.623)	NULL
ACADSB	36	genome.wustl.edu	37	10	124800006	124800006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001609.3	+1	reviewed	p.E110*	0.756	126	0%	107	25.2%	0	-	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
ACADSB	36	genome.wustl.edu	37	10	124802675	124802675	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001609.3	+1	reviewed	p.F265	1.000	125	0%	108	26.9%	0	-	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
ACADSB	36	genome.wustl.edu	37	10	124813266	124813266	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001609.3	+1	reviewed	p.I428	0.003	145	0%	120	15%	3	0%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
FAM53B	9679	genome.wustl.edu	37	10	126311817	126311817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014661.3	-1	validated	p.K421N	1.000	30	0%	11	54.5%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
METTL10	399818	genome.wustl.edu	37	10	126463270	126463270	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000368836	-1	known	p.E125*	1.000	90	0%	84	26.2%	0	-	-	-	-	HMMPfam_Methyltransf_11,superfamily_SSF53335
C10orf90	118611	genome.wustl.edu	37	10	128209882	128209882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004298.2	-1	validated	p.K3T	0.000	89	0%	61	26.2%	0	-	benign(0.102)	deleterious(0)	neutral(0.453)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128768998	128768998	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000398025	+1	known	p.E27*	1.000	75	0%	115	23.5%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
DOCK1	1793	genome.wustl.edu	37	10	128798503	128798503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000398025	+1	known	p.R306H	0.994	166	0%	137	28.5%	0	-	benign(0.157)	tolerated(0.22)	neutral(0.056)	NULL
FAM196A	642938	genome.wustl.edu	37	10	128974463	128974463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039762.2	-1	validated	p.S66L	0.013	45	0%	40	40%	1	100%	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129046280	129046280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000398025	+1	known	p.F997	0.744	59	0%	52	25%	2	0%	-	-	-	NULL
CLRN3	119467	genome.wustl.edu	37	10	129676622	129676622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152311.3	-1	validated	p.E158K	0.000	67	0%	53	20.8%	1	100%	benign(0.009)	tolerated(0.22)	neutral(0.043)	NULL
PTPRE	5791	genome.wustl.edu	37	10	129870476	129870476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006504.4	+1	reviewed	p.D488Y	1.000	50	0%	38	26.3%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129902273	129902273	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002417.4	-1	reviewed	p.E2611*	0.000	101	0%	161	29.8%	2	50%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129903567	129903567	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002417.4	-1	reviewed	p.R2179	0.000	207	0%	331	33.8%	1	0%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905089	129905089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002417.4	-1	reviewed	p.S1672I	0.000	297	0%	436	24.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905848	129905848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002417.4	-1	reviewed	p.H1419P	0.000	360	0%	537	21.6%	0	-	possibly_damaging(0.899)	tolerated(0.32)	neutral(0.380)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129907286	129907286	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002417.4	-1	reviewed	p.E940*	0.129	409	0.2%	549	29.3%	0	-	-	-	-	NULL
GLRX3	10539	genome.wustl.edu	37	10	131969878	131969878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006541.3	+1	provisional	p.L268M	0.999	55	0%	75	16%	38	31.5%	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
GLRX3	10539	genome.wustl.edu	37	10	131977615	131977615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006541.3	+1	provisional	p.E323*	1.000	186	0%	163	28.8%	55	18.1%	-	-	-	superfamily_Thiordxn-like_fd
PPP2R2D	55844	genome.wustl.edu	37	10	133761248	133761248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018461.3	+1	validated	p.R313*	0.809	36	0%	32	37.5%	39	38.4%	unknown(0)	-	-	NULL
BNIP3	664	genome.wustl.edu	37	10	133782057	133782057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004052.2	-1	reviewed	p.R186C	1.000	72	0%	24	20.8%	72	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BNIP3
KNDC1	85442	genome.wustl.edu	37	10	134981757	134981757	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152643.6	+1	validated	e3-1	1.000	37	0%	51	9.8%	0	-	-	-	-	-
MTG1	92170	genome.wustl.edu	37	10	135212692	135212692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138384.2	+1	validated	p.E128*	0.001	24	0%	23	17.4%	12	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SYCE1	93426	genome.wustl.edu	37	10	135371405	135371405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143764.1	-1	validated	p.R113W	0.577	33	0%	47	38.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
FRG2B	441581	genome.wustl.edu	37	10	135440123	135440123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080998.1	-1	provisional	p.E42*	0.015	91	0%	83	18.1%	0	-	-	-	-	NULL
PHRF1	57661	genome.wustl.edu	37	11	601669	601669	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020901.2	+1	validated	p.R374*	0.013	26	0%	22	22.7%	4	0%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1262666	1262666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002458.1	+1	validated	p.K1522T	0.000	22	0%	21	23.8%	16	62.5%	benign(0.099)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271405	1271405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002458.1	+1	validated	p.A4435V	0.008	27	0%	42	28.6%	448	71.6%	unknown(0)	-	-	NULL
TNNT3	7140	genome.wustl.edu	37	11	1953741	1953741	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006757.3	+1	reviewed	p.F56	0.999	13	0%	21	42.9%	0	-	-	-	-	NULL
ZNF195	7748	genome.wustl.edu	37	11	3380445	3380445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130520.1	-1	validated	p.R598I	1.000	682	0%	553	31.5%	4	25%	possibly_damaging(0.476)	tolerated(0.23)	neutral(0.199)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF195	7748	genome.wustl.edu	37	11	3381468	3381468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130520.1	-1	validated	p.S257*	0.005	460	0%	410	25.4%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF195	7748	genome.wustl.edu	37	11	3392255	3392255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130520.1	-1	validated	p.R59Q	0.000	414	0%	379	27.7%	8	25%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
NUP98	4928	genome.wustl.edu	37	11	3774557	3774557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016320.4	-1	reviewed	p.G419E	1.000	143	0%	122	29.5%	2	50%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
STIM1	6786	genome.wustl.edu	37	11	4104508	4104508	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003156.3	+1	reviewed	p.E418	0.998	134	0%	129	31.8%	32	37.5%	-	-	-	NULL
TRIM21	6737	genome.wustl.edu	37	11	4409565	4409565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003141.3	-1	reviewed	p.R234*	0.008	350	0%	288	20.5%	17	0%	-	-	-	NULL
TRIM21	6737	genome.wustl.edu	37	11	4411428	4411428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003141.3	-1	reviewed	p.N71S	0.925	170	0%	135	25.9%	21	52.3%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_SSF57850
OR51E2	81285	genome.wustl.edu	37	11	4703452	4703452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030774.3	-1	validated	p.R164W	0.002	123	0%	100	26%	0	-	benign(0.265)	deleterious(0.01)	neutral(0.433)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51F1	256892	genome.wustl.edu	37	11	4790816	4790816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004752.1	-1	provisional	p.F111C	0.000	114	0%	126	27%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_SSF81321
OR52R1	119695	genome.wustl.edu	37	11	4824829	4824829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005177.3	-1	validated	p.S340Y	0.279	233	0%	279	28.7%	0	-	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51A7	119687	genome.wustl.edu	37	11	4929190	4929190	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004749.1	+1	provisional	p.I197	0.893	348	0%	317	30%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4967960	4967960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005329.1	-1	provisional	p.R124I	0.158	788	0.1%	632	22.8%	0	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR52J3	119679	genome.wustl.edu	37	11	5068656	5068656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001916.2	+1	validated	p.R301*	0.001	236	0.4%	185	16.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR52E2	119678	genome.wustl.edu	37	11	5080032	5080032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005164.2	-1	validated	p.L276I	0.062	225	0%	181	18.8%	0	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A4	390053	genome.wustl.edu	37	11	5142203	5142203	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005222.2	-1	validated	p.V202	0.711	316	0%	309	31.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52A4	390053	genome.wustl.edu	37	11	5142325	5142325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005222.2	-1	validated	p.P162T	0.090	276	0%	279	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR51V1	283111	genome.wustl.edu	37	11	5220990	5220990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004760.2	-1	validated	p.R314I	0.022	189	0%	94	26.6%	0	-	possibly_damaging(0.76)	deleterious(0.01)	deleterious(0.687)	superfamily_Family A G protein-coupled receptor-like
OR51B6	390058	genome.wustl.edu	37	11	5373312	5373312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004750.1	+1	provisional	p.F192S	1.000	311	0.6%	253	22.9%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_7tm_1,superfamily_SSF81321
OR51I1	390063	genome.wustl.edu	37	11	5462628	5462628	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005288.2	-1	validated	p.I39	0.017	257	0%	255	25.5%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR51I2	390064	genome.wustl.edu	37	11	5475300	5475300	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004754.2	+1	validated	p.I194	0.833	233	0%	229	31.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
UBQLN3	50613	genome.wustl.edu	37	11	5529349	5529349	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017481.2	-1	reviewed	p.P480	0.000	49	0%	53	22.6%	0	-	-	-	-	NULL
UBQLN3	50613	genome.wustl.edu	37	11	5530637	5530637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017481.2	-1	reviewed	p.S51Y	0.998	122	0%	141	35.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
OR52H1	390067	genome.wustl.edu	37	11	5566279	5566279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005289.1	-1	provisional	p.R159*	0.003	170	0%	189	31.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5655903	5655903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003819.2	+1	reviewed	p.D542Y	0.585	91	0%	106	24.5%	0	-	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	NULL
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5655974	5655974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003819.2	+1	reviewed	p.K565N	0.000	120	0%	152	21.1%	1	0%	benign(0.016)	tolerated(0.86)	neutral(0.001)	NULL
TRIM5	85363	genome.wustl.edu	37	11	5699566	5699566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033034.2	-1	reviewed	p.E204D	0.028	208	0%	210	21.9%	10	30%	benign(0.355)	deleterious(0.04)	neutral(0.461)	NULL
OR52E6	390078	genome.wustl.edu	37	11	5862222	5862222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005167.1	-1	provisional	p.E302D	0.000	364	0%	289	28.7%	0	-	benign(0.001)	tolerated(1)	-	superfamily_SSF81321
OR56A3	390083	genome.wustl.edu	37	11	5968590	5968590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003443.2	+1	provisional	p.R5Q	0.000	154	0%	242	26%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	superfamily_SSF81321
OR52L1	338751	genome.wustl.edu	37	11	6007341	6007341	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005173.2	-1	validated	p.I274F	0.705	191	0%	196	16.8%	0	-	benign(0.003)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56A1	120796	genome.wustl.edu	37	11	6048246	6048246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001917.2	-1	validated	p.R230I	0.002	246	0%	211	31.8%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000180913	0	genome.wustl.edu	37	11	6149955	6149955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000316517	+1	known	p.L39P	0.094	74	0%	62	24.2%	0	-	benign(0.064)	deleterious(0)	neutral(0.449)	superfamily_SSF81321
CNGA4	1262	genome.wustl.edu	37	11	6261928	6261928	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037329.2	+1	validated	p.R302*	0.192	113	0%	132	37.1%	0	-	-	-	-	superfamily_cAMP-binding domain-like
CNGA4	1262	genome.wustl.edu	37	11	6265493	6265493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037329.2	+1	validated	p.R528C	1.000	77	0%	91	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMPD1	6609	genome.wustl.edu	37	11	6412102	6412102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000543.3	+1	reviewed	p.P92S	0.746	107	0%	90	20%	13	15.3%	benign(0.005)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00741,superfamily_Saposin
DCHS1	8642	genome.wustl.edu	37	11	6646885	6646885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003737.2	-1	reviewed	p.D2269N	1.000	67	0%	45	33.3%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6648492	6648492	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003737.2	-1	reviewed	p.T1926	1.000	30	0%	15	26.7%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR10A5	144124	genome.wustl.edu	37	11	6866935	6866935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178168.1	+1	provisional	p.E8*	0.009	345	0%	284	27.5%	0	-	-	-	-	superfamily_SSF81321
OR10A4	283297	genome.wustl.edu	37	11	6898817	6898817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207186.2	+1	validated	p.Q313H	0.635	218	0%	239	22.2%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
OR2D2	120776	genome.wustl.edu	37	11	6913019	6913019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003700.1	-1	provisional	p.F238C	0.918	189	0%	226	11.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D3	120775	genome.wustl.edu	37	11	6943166	6943166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004684.1	+1	provisional	p.D312Y	1.000	221	0%	228	28.5%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_SSF81321
ZNF215	7762	genome.wustl.edu	37	11	6962868	6962868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013250.2	+1	validated	p.R156Q	0.001	226	0%	213	24.4%	1	0%	benign(0.063)	tolerated(0.56)	neutral(0.010)	NULL
ZNF214	7761	genome.wustl.edu	37	11	7021545	7021545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013249.2	-1	validated	p.L457I	1.000	236	0%	346	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NLRP14	338323	genome.wustl.edu	37	11	7059899	7059899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176822.3	+1	reviewed	p.N28H	0.809	208	0%	217	30.9%	0	-	possibly_damaging(0.679)	deleterious(0.04)	deleterious(0.591)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
NLRP14	338323	genome.wustl.edu	37	11	7063915	7063915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176822.3	+1	reviewed	p.E220*	1.000	263	0%	227	29.1%	0	-	-	-	-	HMMPfam_NACHT
RBMXL2	27288	genome.wustl.edu	37	11	7110424	7110424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014469.4	+1	reviewed	p.E25K	0.964	14	0%	13	53.8%	0	-	benign(0.107)	tolerated(0.67)	neutral(0.011)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SYT9	143425	genome.wustl.edu	37	11	7437321	7437321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175733.3	+1	validated	p.T365A	0.997	331	0%	423	29.6%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_C2_CaLB
PPFIBP2	8495	genome.wustl.edu	37	11	7674305	7674305	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003621.2	+1	validated	p.F829	0.547	244	0%	148	27%	23	39.1%	-	-	-	NULL
OVCH2	341277	genome.wustl.edu	37	11	7713206	7713206	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198185.2	-1	validated	p.E478D	0.847	19	0%	21	28.6%	0	-	benign(0.04)	tolerated(0.51)	neutral(0.011)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OVCH2	341277	genome.wustl.edu	37	11	7721858	7721858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198185.2	-1	validated	p.E296K	0.000	43	0%	48	10.4%	0	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	superfamily_Trypsin-like serine proteases
OR10A3	26496	genome.wustl.edu	37	11	7960255	7960255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003745.1	-1	provisional	p.K271N	0.878	256	0%	265	31.3%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NLRP10	338322	genome.wustl.edu	37	11	7981578	7981578	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176821.3	-1	reviewed	p.S527	0.000	157	0%	156	26.3%	0	-	-	-	-	NULL
NLRP10	338322	genome.wustl.edu	37	11	7982851	7982851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176821.3	-1	reviewed	p.R103Q	1.000	82	0%	79	20.3%	0	-	possibly_damaging(0.885)	deleterious(0.03)	deleterious(0.710)	NULL
LMO1	4004	genome.wustl.edu	37	11	8248629	8248629	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002315.1	-1	reviewed	p.G86	1.000	28	0%	34	32.4%	0	-	-	-	-	superfamily_SSF57716
NRIP3	56675	genome.wustl.edu	37	11	9005626	9005626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020645.2	-1	validated	p.S203Y	0.999	334	0%	252	25%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	superfamily_Pept_Aspartic,HMMPfam_Asp_protease
SCUBE2	57758	genome.wustl.edu	37	11	9087474	9087474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020974.2	-1	validated	p.D272N	1.000	60	0%	73	32.9%	0	-	probably_damaging(0.959)	tolerated(0.11)	deleterious(0.674)	NULL
SBF2	81846	genome.wustl.edu	37	11	10024183	10024183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030962.3	-1	reviewed	p.L225I	1.000	286	0%	209	27.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DENN,HMMSmart_SM00799
MRVI1	10335	genome.wustl.edu	37	11	10602108	10602108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098579.1	-1	reviewed	p.E788*	1.000	481	0%	421	29%	0	-	-	-	-	HMMPfam_MRVI1
MICAL2	9645	genome.wustl.edu	37	11	12247821	12247821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014632.2	+1	provisional	p.E598*	1.000	80	0%	89	14.6%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MICALCL	84953	genome.wustl.edu	37	11	12315174	12315174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032867.2	+1	validated	p.R66W	0.000	251	0%	212	19.3%	2	0%	possibly_damaging(0.772)	deleterious(0.01)	deleterious(0.693)	NULL
TEAD1	7003	genome.wustl.edu	37	11	12923642	12923642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021961.5	+1	reviewed	p.F270L	1.000	292	0%	190	29.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TEA
RRAS2	22800	genome.wustl.edu	37	11	14316023	14316023	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012250.5	-1	reviewed	p.Q134	0.971	108	0%	155	20%	31	32.2%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PSMA1	5682	genome.wustl.edu	37	11	14535995	14535995	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148976.2	-1	reviewed	p.F105	1.000	73	0%	47	38.3%	218	33.4%	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
CYP2R1	120227	genome.wustl.edu	37	11	14901797	14901797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024514.4	-1	reviewed	p.F295L	0.999	116	0%	132	28%	2	50%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2R1	120227	genome.wustl.edu	37	11	14902066	14902066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024514.4	-1	reviewed	p.D206N	1.000	153	0%	160	32.5%	2	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2R1	120227	genome.wustl.edu	37	11	14902249	14902249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024514.4	-1	reviewed	p.R145*	1.000	131	0%	201	31.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CALCA	796	genome.wustl.edu	37	11	14990396	14990396	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033952.2	-1	reviewed	p.D125	0.929	226	0%	295	20%	0	-	-	-	-	NULL
INSC	387755	genome.wustl.edu	37	11	15222372	15222372	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031853.3	+1	provisional	p.E279	1.000	37	0%	41	24.4%	0	-	-	-	-	superfamily_ARM repeat
SOX6	55553	genome.wustl.edu	37	11	16036576	16036576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033326.3	-1	reviewed	p.N548K	0.470	189	0.5%	133	21.8%	0	-	benign(0.07)	deleterious(0.01)	neutral(0.411)	NULL
PLEKHA7	144100	genome.wustl.edu	37	11	16822540	16822540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175058.4	-1	validated	p.R797K	1.000	365	0.3%	360	26.1%	0	-	benign(0.085)	tolerated(1)	neutral(0.006)	NULL
PLEKHA7	144100	genome.wustl.edu	37	11	16824525	16824525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175058.4	-1	validated	p.E717D	1.000	211	0.5%	151	24.5%	0	-	benign(0.006)	tolerated(0.54)	neutral(0.007)	NULL
RPS13	6207	genome.wustl.edu	37	11	17097026	17097026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017.2	-1	reviewed	p.R99Q	0.994	82	0%	90	30%	678	28.3%	benign(0.222)	deleterious(0)	neutral(0.467)	HMMPfam_Ribosomal_S15,PatternScan_RIBOSOMAL_S15,superfamily_S15/NS1 RNA-binding domain
PIK3C2A	5286	genome.wustl.edu	37	11	17113137	17113137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002645.2	-1	validated	p.R1570Q	1.000	141	0%	191	30.9%	4	75%	probably_damaging(0.991)	tolerated(0.73)	neutral(0.446)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ABCC8	6833	genome.wustl.edu	37	11	17432122	17432122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000352.3	-1	reviewed	p.D879N	1.000	135	0%	185	22.7%	0	-	possibly_damaging(0.93)	deleterious(0.04)	deleterious(0.726)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TPH1	7166	genome.wustl.edu	37	11	18062269	18062269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004179.2	-1	reviewed	p.E14G	1.000	83	0%	105	27.6%	0	-	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	superfamily_ACT-like
ENSG00000189332	0	genome.wustl.edu	37	11	18231290	18231290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000340135	+1	known	p.E26K	0.009	95	0%	100	33%	0	-	benign(0.017)	tolerated(0.33)	neutral(0.025)	NULL
HPS5	11234	genome.wustl.edu	37	11	18317630	18317630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181507.1	-1	reviewed	p.K517T	1.000	138	0%	147	32%	2	50%	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	NULL
GTF2H1	2965	genome.wustl.edu	37	11	18357412	18357412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142307.1	+1	validated	p.R89Q	1.000	161	0%	191	36.6%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
GTF2H1	2965	genome.wustl.edu	37	11	18373941	18373941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142307.1	+1	validated	p.S403Y	1.000	479	0%	506	24.9%	4	25%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
LDHA	3939	genome.wustl.edu	37	11	18418455	18418455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005566.3	+1	reviewed	p.K22N	1.000	233	0.4%	206	24.3%	154	12.9%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
LDHAL6A	160287	genome.wustl.edu	37	11	18485579	18485579	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144071.1	+1	validated	p.Q66	1.000	206	0%	187	26.7%	0	-	-	-	-	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
ENSG00000247595	0	genome.wustl.edu	37	11	18631510	18631510	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501599	+1	known	NULL	0.008	158	0%	151	28.5%	0	-	-	-	-	-
TMEM86A	144110	genome.wustl.edu	37	11	18723427	18723427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153347.1	+1	provisional	p.F198L	1.000	117	0%	104	36.5%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_YhhN
IGSF22	283284	genome.wustl.edu	37	11	18741816	18741816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173588.3	-1	validated	p.S132L	0.986	59	0%	53	30.2%	0	-	probably_damaging(0.955)	tolerated(0.12)	deleterious(0.659)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
E2F8	79733	genome.wustl.edu	37	11	19259593	19259593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024680.2	-1	validated	p.E34D	0.776	137	0%	99	18.2%	0	-	benign(0.009)	tolerated(0.6)	neutral(0.005)	NULL
NAV2	89797	genome.wustl.edu	37	11	20065589	20065589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182964.5	+1	validated	p.K990N	1.000	166	0%	131	19.1%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PRMT3	10196	genome.wustl.edu	37	11	20429519	20429519	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005788.3	+1	validated	p.A278	0.856	180	0%	143	31.5%	1	100%	-	-	-	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC645490	645490	genome.wustl.edu	37	11	20596412	20596412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_928515.4	+1	model	p.E292K	1.000	41	0%	72	29.2%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
NELL1	4745	genome.wustl.edu	37	11	21592382	21592382	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006157.3	+1	reviewed	p.E685*	1.000	281	0%	267	26.6%	0	-	-	-	-	HMMSmart_SM00214
ANO5	203859	genome.wustl.edu	37	11	22232854	22232854	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213599.2	+1	reviewed	p.E44	0.000	488	0%	436	29.4%	0	-	-	-	-	NULL
ANO5	203859	genome.wustl.edu	37	11	22271796	22271796	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213599.2	+1	reviewed	p.E298*	1.000	107	0%	61	13.1%	0	-	-	-	-	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22363299	22363299	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020346.2	+1	validated	p.I104	1.000	32	0%	35	37.1%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LUZP2	338645	genome.wustl.edu	37	11	24927594	24927594	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009909.2	+1	validated	p.E152*	1.000	92	0%	94	26.6%	0	-	-	-	-	NULL
MUC15	143662	genome.wustl.edu	37	11	26584681	26584681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135091.1	-1	validated	p.D303Y	1.000	221	0%	228	16.2%	0	-	unknown(0)	deleterious(0)	-	NULL
LGR4	55366	genome.wustl.edu	37	11	27390629	27390629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018490.2	-1	validated	p.F547L	1.000	209	0%	199	28.1%	0	-	probably_damaging(0.998)	tolerated(0.43)	deleterious(0.488)	superfamily_SSF81321
LGR4	55366	genome.wustl.edu	37	11	27414057	27414057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018490.2	-1	validated	p.A89V	1.000	49	0%	56	35.7%	2	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_LRR_1,superfamily_SSF52058
KIF18A	81930	genome.wustl.edu	37	11	28106297	28106297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031217.3	-1	validated	p.S319Y	1.000	194	0%	126	23%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF18A	81930	genome.wustl.edu	37	11	28119222	28119222	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031217.3	-1	validated	p.E91	1.000	124	0%	105	26.7%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
DCDC5	100506627	genome.wustl.edu	37	11	30944167	30944167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343054.1	-1	model	p.E157*	1.000	122	0%	47	17%	0	-	-	-	-	superfamily_Doublecortin (DC)
LOC100288976	100288976	genome.wustl.edu	37	11	31128392	31128392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343074.1	-1	model	p.S184L	0.538	184	0%	125	24.8%	0	-	-	-	-	NULL
DCDC1	341019	genome.wustl.edu	37	11	31312267	31312267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181807.2	-1	validated	p.R296Q	0.998	177	0%	196	26.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF89837
DCDC1	341019	genome.wustl.edu	37	11	31327244	31327244	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181807.2	-1	validated	p.L224	0.722	282	0%	196	34.2%	0	-	-	-	-	superfamily_SSF89837
CCDC73	493860	genome.wustl.edu	37	11	32657370	32657370	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008391.2	-1	validated	p.E353*	1.000	223	0%	170	29.4%	0	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32676509	32676509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008391.2	-1	validated	p.K219Q	1.000	43	0%	54	27.8%	0	-	possibly_damaging(0.654)	tolerated(0.11)	deleterious(0.502)	NULL
QSER1	79832	genome.wustl.edu	37	11	32990657	32990657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001076786.1	+1	provisional	p.L1596I	1.000	151	0%	110	32.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33047304	33047304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077242.1	+1	validated	p.R58H	0.997	171	0%	138	22.5%	2	0%	benign(0)	tolerated(0.58)	neutral(0.005)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
DEPDC7	91614	genome.wustl.edu	37	11	33047313	33047313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077242.1	+1	validated	p.R61Q	0.526	170	0%	139	30.2%	2	100%	possibly_damaging(0.565)	tolerated(0.31)	neutral(0.220)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
DEPDC7	91614	genome.wustl.edu	37	11	33054274	33054274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077242.1	+1	validated	p.L400V	0.240	174	0%	179	30.7%	0	-	benign(0.008)	tolerated(0.07)	neutral(0.319)	NULL
HIPK3	10114	genome.wustl.edu	37	11	33358624	33358624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005734.3	+1	validated	p.R409*	1.000	191	0%	169	20.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C11orf41	25758	genome.wustl.edu	37	11	33565829	33565829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012194.1	+1	validated	p.P610L	0.010	217	0.5%	207	26.6%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33566752	33566752	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012194.1	+1	validated	p.V780	0.983	203	0%	212	34.4%	0	-	-	-	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33631491	33631491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012194.1	+1	validated	p.P1462Q	0.977	171	0%	117	31.6%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
PDHX	8050	genome.wustl.edu	37	11	34991801	34991801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003477.2	+1	reviewed	p.A311V	1.000	152	0%	107	30.8%	11	45.4%	possibly_damaging(0.674)	tolerated(0.24)	neutral(0.277)	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
TRIM44	54765	genome.wustl.edu	37	11	35684900	35684900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017583.4	+1	reviewed	p.A81T	0.000	28	0%	31	22.6%	6	16.6%	unknown(0)	tolerated(0.25)	-	NULL
COMMD9	29099	genome.wustl.edu	37	11	36296183	36296183	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014186.3	-1	validated	p.*199L	0.958	95	0%	79	19%	55	20%	-	-	-	NULL
PRR5L	79899	genome.wustl.edu	37	11	36472856	36472856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024841.4	+1	validated	p.R228H	0.652	99	0%	75	32%	15	13.3%	benign(0.012)	tolerated(0.58)	neutral(0.005)	NULL
RAG1	5896	genome.wustl.edu	37	11	36595177	36595177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000448.2	+1	reviewed	p.R108Q	0.369	258	0%	176	33%	0	-	benign(0.045)	tolerated(0.4)	neutral(0.018)	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40137316	40137316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020929.1	-1	validated	p.R176L	1.000	220	0%	186	25.8%	0	-	possibly_damaging(0.557)	tolerated(0.46)	neutral(0.202)	superfamily_L domain-like
API5	8539	genome.wustl.edu	37	11	43364267	43364267	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_024625.1	+1	validated	NULL	1.000	11	0%	17	47.1%	11	45.4%	-	-	-	-
TTC17	55761	genome.wustl.edu	37	11	43511874	43511874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018259.5	+1	validated	p.R1039L	1.000	226	0%	204	25.5%	36	47.2%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_TPR,superfamily_SSF48452
ALKBH3	221120	genome.wustl.edu	37	11	43904214	43904214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139178.3	+1	validated	p.K4N	1.000	53	0%	46	23.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYT13	57586	genome.wustl.edu	37	11	45274228	45274228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020826.2	-1	validated	p.G197E	0.995	103	0%	103	31.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MAPK8IP1	9479	genome.wustl.edu	37	11	45925556	45925556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005456.2	+1	reviewed	p.E504K	0.966	71	0%	38	34.2%	24	20.8%	benign(0.05)	deleterious(0.04)	neutral(0.352)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
MDK	4192	genome.wustl.edu	37	11	46405023	46405023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000405098	+1	known	p.E56*	1.000	14	0%	24	20.8%	5317	42.9%	-	-	-	NULL
ATG13	9776	genome.wustl.edu	37	11	46678659	46678659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142673.1	+1	validated	p.R172C	1.000	139	0%	118	27.1%	12	25%	benign(0.181)	deleterious(0.01)	neutral(0.422)	HMMPfam_DUF2224
CKAP5	9793	genome.wustl.edu	37	11	46832588	46832588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008938.1	-1	validated	p.R200I	1.000	170	0%	155	27.7%	1	0%	benign(0.066)	deleterious(0)	neutral(0.449)	superfamily_ARM repeat
LRP4	4038	genome.wustl.edu	37	11	46896419	46896419	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002334.3	-1	reviewed	p.V1387	1.000	115	0%	96	30.2%	32	31.2%	-	-	-	HMMSmart_SM00135,superfamily_YWTD domain
SLC39A13	91252	genome.wustl.edu	37	11	47433982	47433982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128225.2	+1	reviewed	p.K167N	1.000	23	0%	22	27.3%	16	25%	possibly_damaging(0.61)	deleterious(0.02)	deleterious(0.595)	HMMPfam_Zip
AGBL2	79841	genome.wustl.edu	37	11	47712314	47712314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024783.2	-1	validated	p.D315E	0.006	203	0%	264	28.4%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
NUP160	23279	genome.wustl.edu	37	11	47819986	47819986	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015231.1	-1	validated	p.L975F	1.000	263	0.4%	291	26.1%	11	54.5%	possibly_damaging(0.889)	tolerated(0.13)	deleterious(0.602)	NULL
OR4C5	79346	genome.wustl.edu	37	11	48387637	48387637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000319813	-1	known	p.F127L	0.085	19	0%	19	36.8%	0	-	benign(0.032)	tolerated(0.4)	neutral(0.018)	HMMPfam_7tm_1,superfamily_SSF81321
LOC120824	120824	genome.wustl.edu	37	11	49000610	49000610	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_062300.6	-1	model	p.H184	0.054	76	0%	99	29.3%	0	-	-	-	-	NULL
LOC283116	283116	genome.wustl.edu	37	11	49059487	49059487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_208043.4	+1	model	p.F439L	0.112	642	0%	639	16.7%	0	-	benign(0.005)	tolerated(0.37)	neutral(0.019)	HMMPfam_SPRY
ENSG00000219061	0	genome.wustl.edu	37	11	49860860	49860860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000405176	-1	known	p.I5L	0.776	160	0%	300	25.7%	0	-	-	-	-	superfamily_SSF57850
OR4C13	283092	genome.wustl.edu	37	11	49974718	49974718	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001955.2	+1	validated	p.S248	0.003	431	0.7%	385	30.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4C12	283093	genome.wustl.edu	37	11	50003294	50003294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005270.2	-1	validated	p.F248L	0.000	294	0%	194	23.7%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000214883	0	genome.wustl.edu	37	11	50368823	50368823	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000399175	+1	known	e0+2	1.000	125	0%	121	23.1%	0	-	-	-	-	-
ENSG00000166007	0	genome.wustl.edu	37	11	55059985	55059985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000309470	-1	known	p.D309Y	0.042	288	0%	261	19.9%	0	-	-	-	-	NULL
OR4A15	81328	genome.wustl.edu	37	11	55136243	55136243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005275.1	+1	provisional	p.I295T	0.002	589	0%	675	24.7%	0	-	benign(0.024)	tolerated(0.12)	neutral(0.262)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181943	0	genome.wustl.edu	37	11	55259034	55259034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314657	+1	known	p.D106Y	1.000	292	0%	319	23.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000181943	0	genome.wustl.edu	37	11	55259069	55259069	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314657	+1	known	p.Y117*	0.060	315	0%	356	33.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C16	219428	genome.wustl.edu	37	11	55339915	55339915	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004701.2	+1	validated	p.V104	0.673	404	0%	339	19.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4C6	219432	genome.wustl.edu	37	11	55432703	55432703	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004704.1	+1	provisional	p.L21	0.000	262	0%	343	23.6%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR5L1	219437	genome.wustl.edu	37	11	55579875	55579875	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004738.1	+1	provisional	p.S311	0.000	101	0%	81	28.4%	0	-	-	-	-	NULL
OR5D18	219438	genome.wustl.edu	37	11	55587651	55587651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001952.1	+1	provisional	p.F182L	0.025	428	0%	388	26%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5L2	26338	genome.wustl.edu	37	11	55595430	55595430	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004739.1	+1	provisional	p.T246P	0.831	309	0%	343	34.4%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D16	390144	genome.wustl.edu	37	11	55606564	55606564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005496.1	+1	provisional	p.E113*	0.009	498	0%	530	30.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681465	55681465	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001960.1	-1	provisional	p.V198	0.000	226	0%	189	11.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703611	55703611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006637.1	-1	reviewed	p.S89L	0.001	180	0%	241	19.1%	0	-	probably_damaging(0.987)	tolerated(0.38)	neutral(0.454)	HMMPfam_7tm_1,superfamily_SSF81321
OR10AG1	282770	genome.wustl.edu	37	11	55735237	55735237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005491.1	-1	provisional	p.H235N	1.000	124	0%	83	15.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55762017	55762017	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003697.1	-1	provisional	p.L29	0.000	223	0%	210	31.4%	0	-	-	-	-	superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798098	55798098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001921.1	+1	provisional	p.F68L	0.998	211	0%	174	26.4%	0	-	possibly_damaging(0.946)	tolerated(0.23)	neutral(0.431)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	55999620	55999620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004746.1	-1	provisional	p.Q348K	0.000	254	0.4%	290	31.7%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
OR5T3	390154	genome.wustl.edu	37	11	56019777	56019777	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004747.1	+1	provisional	p.K34	0.000	200	0%	206	19.9%	0	-	-	-	-	superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043422	56043422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004745.1	+1	provisional	p.S103Y	0.000	500	0%	492	13%	0	-	possibly_damaging(0.609)	tolerated(0.32)	neutral(0.235)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8H1	219469	genome.wustl.edu	37	11	56057777	56057777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005199.1	-1	provisional	p.M254I	0.000	275	0%	164	25.6%	0	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8K3	219473	genome.wustl.edu	37	11	56086060	56086060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005202.1	+1	provisional	p.S93Y	0.204	281	0%	307	32.2%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K3	219473	genome.wustl.edu	37	11	56086373	56086373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005202.1	+1	provisional	p.L197F	0.001	159	0%	165	27.9%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M3	219482	genome.wustl.edu	37	11	56237552	56237552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004742.1	-1	provisional	p.R141Q	0.000	309	0%	303	20.5%	0	-	benign(0.026)	tolerated(0.46)	neutral(0.013)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237595	56237595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004742.1	-1	provisional	p.P127S	0.998	322	0%	302	29.8%	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237711	56237711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004742.1	-1	provisional	p.K88T	0.022	379	0%	330	28.5%	0	-	benign(0.199)	tolerated(0.07)	neutral(0.338)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AK2	390181	genome.wustl.edu	37	11	56756655	56756655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005323.1	+1	provisional	p.K89N	0.000	326	0%	391	27.4%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
SSRP1	6749	genome.wustl.edu	37	11	57100567	57100567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003146.2	-1	reviewed	p.N135D	1.000	40	0%	76	23.7%	43	41.8%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
SSRP1	6749	genome.wustl.edu	37	11	57102112	57102112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003146.2	-1	reviewed	p.R22Q	1.000	80	0%	105	26.7%	75	25.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PRG3	10394	genome.wustl.edu	37	11	57147131	57147131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006093.3	-1	validated	p.D71Y	0.004	20	0%	38	23.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PRG2	5553	genome.wustl.edu	37	11	57156638	57156638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002728.4	-1	reviewed	p.D71Y	0.000	108	0%	174	28.2%	2	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
SLC43A3	29015	genome.wustl.edu	37	11	57182519	57182519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014096.2	-1	validated	p.R277Q	0.044	122	0%	128	18.8%	16	0%	benign(0.034)	tolerated(0.42)	neutral(0.016)	superfamily_MFS_gen_substrate_transporter
SLC43A1	8501	genome.wustl.edu	37	11	57261522	57261522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003627.4	-1	provisional	p.S272L	0.000	51	0%	46	32.6%	6	83.3%	benign(0.062)	tolerated(0.43)	neutral(0.018)	superfamily_MFS general substrate transporter
SMTNL1	219537	genome.wustl.edu	37	11	57310688	57310688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105565.1	+1	provisional	p.E209D	0.014	48	0%	63	31.7%	6	33.3%	possibly_damaging(0.868)	tolerated(0.07)	deleterious(0.656)	NULL
SERPING1	710	genome.wustl.edu	37	11	57367822	57367822	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000062.2	+1	reviewed	p.I174	0.020	175	0%	193	33.7%	240	15.8%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
ZDHHC5	25921	genome.wustl.edu	37	11	57466681	57466681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015457.2	+1	validated	p.K591N	1.000	122	0%	139	38.8%	46	32.6%	benign(0.304)	tolerated(0.16)	neutral(0.154)	NULL
OR6Q1	219952	genome.wustl.edu	37	11	57798461	57798461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005186.2	+1	validated	p.E13*	0.881	467	0%	488	24%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR6Q1	219952	genome.wustl.edu	37	11	57798553	57798553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005186.2	+1	validated	p.E43D	0.986	453	0.2%	409	27.4%	0	-	possibly_damaging(0.783)	tolerated(0.16)	neutral(0.352)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6Q1	219952	genome.wustl.edu	37	11	57798648	57798648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005186.2	+1	validated	p.Y75S	0.724	369	0%	338	22.5%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR9I1	219954	genome.wustl.edu	37	11	57886086	57886086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005211.1	-1	validated	p.F277L	0.967	224	0%	239	33.1%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR9I1	219954	genome.wustl.edu	37	11	57886089	57886089	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005211.1	-1	validated	p.V276	0.892	235	0%	244	23.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170303	58170303	+	Missense_Mutation	SNP	C	C	T	rs190645593	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005469.1	-1	validated	p.E194K	0.106	306	0%	346	26.6%	0	-	benign(0.402)	tolerated(0.09)	neutral(0.425)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B2	390190	genome.wustl.edu	37	11	58190721	58190721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005566.2	-1	validated	p.T5M	0.834	403	0%	560	16.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Family A G protein-coupled receptor-like
OR5B21	219968	genome.wustl.edu	37	11	58275379	58275379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005218.1	-1	provisional	p.V67A	0.044	266	0%	260	28.8%	0	-	benign(0.195)	tolerated(0.09)	neutral(0.315)	HMMPfam_7tm_1,superfamily_SSF81321
ZFP91	80829	genome.wustl.edu	37	11	58377457	58377457	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053023.3	+1	reviewed	p.T175	0.997	179	0%	165	35.8%	6	16.6%	-	-	-	NULL
GLYATL1	92292	genome.wustl.edu	37	11	58723373	58723373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080661.2	+1	provisional	p.P292Q	0.057	280	0%	216	24.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl_CoA_acyltransferase
GLYATL1	92292	genome.wustl.edu	37	11	58723415	58723415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080661.2	+1	provisional	p.R306I	0.000	281	0%	223	22.9%	1	0%	benign(0.308)	deleterious(0.02)	deleterious(0.479)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl_CoA_acyltransferase
LOC643637	643637	genome.wustl.edu	37	11	58817664	58817664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343101.1	+1	model	p.S159L	0.000	147	0%	130	16.9%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
LOC643637	643637	genome.wustl.edu	37	11	58817665	58817665	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343101.1	+1	model	p.S159	0.000	148	0%	134	17.9%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
LOC100287520	100287520	genome.wustl.edu	37	11	58861948	58861948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343089.1	+1	model	p.R237C	0.006	31	0%	35	28.6%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111B	374393	genome.wustl.edu	37	11	58891940	58891940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198947.3	+1	validated	p.Q124K	0.000	209	0%	255	18.8%	1	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
FAM111B	374393	genome.wustl.edu	37	11	58893195	58893195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198947.3	+1	validated	p.N542T	0.000	280	0%	343	25.4%	3	33.3%	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_Trypsin-like serine proteases
MPEG1	219972	genome.wustl.edu	37	11	58979987	58979987	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039396.1	-1	validated	p.E118*	0.652	216	0%	229	31.4%	1	0%	-	-	-	NULL
OR4D6	219983	genome.wustl.edu	37	11	59224917	59224917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004708.1	+1	provisional	p.L162M	0.012	243	0%	284	24.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D10	390197	genome.wustl.edu	37	11	59245108	59245108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004705.1	+1	provisional	p.A69V	0.000	372	0%	376	34.3%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D11	219986	genome.wustl.edu	37	11	59271079	59271079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004706.1	+1	provisional	p.E11*	1.000	217	0%	186	33.3%	0	-	-	-	-	superfamily_SSF81321
OSBP	5007	genome.wustl.edu	37	11	59369210	59369210	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002556.2	-1	reviewed	p.L308	0.255	173	0%	216	17.1%	9	22.2%	-	-	-	NULL
PATL1	219988	genome.wustl.edu	37	11	59423519	59423519	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152716.2	-1	validated	e7-1	1.000	20	0%	29	27.6%	0	-	-	-	-	-
GIF	2694	genome.wustl.edu	37	11	59604650	59604650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005142.2	-1	reviewed	p.P290T	0.267	120	0%	137	19.7%	0	-	benign(0.018)	tolerated(0.19)	neutral(0.050)	HMMPfam_Cobalamin_bind
TCN1	6947	genome.wustl.edu	37	11	59630139	59630139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001062.3	-1	reviewed	p.R106C	0.010	297	0%	238	24.4%	0	-	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Cobalamin_bind
MS4A14	84689	genome.wustl.edu	37	11	60165404	60165404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032597.3	+1	validated	p.R73I	0.000	155	0%	175	24.6%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_CD20
MS4A1	931	genome.wustl.edu	37	11	60235911	60235911	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021950.3	+1	reviewed	p.S288	0.004	309	0%	240	14.6%	0	-	-	-	-	NULL
MS4A8B	83661	genome.wustl.edu	37	11	60468341	60468341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031457.1	+1	reviewed	p.S3L	0.003	650	0%	506	26.9%	0	-	benign(0.429)	tolerated(0.08)	neutral(0.440)	NULL
CD6	923	genome.wustl.edu	37	11	60781018	60781018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006725.3	+1	validated	p.R425I	0.007	165	0%	152	26.3%	5	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
RAB3IL1	5866	genome.wustl.edu	37	11	61669972	61669972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013401.2	-1	provisional	p.R314Q	1.000	4	0.000	8	0.500	15	6.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SCGB2A1	4246	genome.wustl.edu	37	11	61981211	61981211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002407.2	+1	validated	p.D86A	0.005	333	0%	272	19.9%	4999	49.2%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_Uteroglobin,superfamily_Secretoglobin
SCGB2A2	4250	genome.wustl.edu	37	11	62038495	62038495	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002411.2	+1	provisional	p.F66	0.016	187	0%	213	28.6%	81	70.3%	-	-	-	HMMPfam_Uteroglobin,superfamily_Uteroglobin-like
ASRGL1	80150	genome.wustl.edu	37	11	62159010	62159010	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083926.1	+1	validated	p.A209	0.997	28	0%	15	33.3%	225	40%	-	-	-	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
AHNAK	79026	genome.wustl.edu	37	11	62290726	62290726	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001620.1	-1	validated	p.I3721	0.005	402	0%	285	23.2%	4	25%	-	-	-	HMMPfam_CheC
AHNAK	79026	genome.wustl.edu	37	11	62296324	62296324	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001620.1	-1	validated	p.I1855	0.997	445	0%	345	28.1%	3	66.6%	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62298730	62298730	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001620.1	-1	validated	p.P1053	0.770	171	0%	127	22.8%	0	-	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300033	62300033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001620.1	-1	validated	p.A619V	0.001	138	0%	137	31.4%	0	-	benign(0)	tolerated(1)	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300470	62300470	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001620.1	-1	validated	p.E473	0.027	182	0%	189	27%	2	0%	-	-	-	NULL
STX5	6811	genome.wustl.edu	37	11	62594689	62594689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003164.3	-1	validated	p.R121C	1.000	165	0%	191	28.3%	26	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Syntaxin,superfamily_t-snare proteins
SLC22A25	387601	genome.wustl.edu	37	11	62948202	62948202	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199352.3	-1	validated	p.K334*	0.002	352	0.3%	330	28.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A10	387775	genome.wustl.edu	37	11	63069995	63069995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039752.3	+1	validated	p.A422V	0.000	199	0%	195	30.3%	0	-	benign(0.003)	tolerated(0.23)	neutral(0.042)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A9	114571	genome.wustl.edu	37	11	63141259	63141259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080866.2	+1	validated	p.T217N	0.000	297	0%	283	18%	0	-	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A9	114571	genome.wustl.edu	37	11	63176231	63176231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080866.2	+1	validated	p.S494Y	0.000	175	0%	151	14.6%	0	-	benign(0.002)	tolerated(1)	-	superfamily_MFS general substrate transporter
ATL3	25923	genome.wustl.edu	37	11	63410931	63410931	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015459.3	-1	validated	p.R250*	1.000	73	0%	54	31.5%	1	0%	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAA40	79829	genome.wustl.edu	37	11	63719915	63719915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024771.2	+1	validated	p.E96D	1.000	94	0%	119	33.6%	16	31.2%	possibly_damaging(0.918)	tolerated(0.42)	neutral(0.383)	superfamily_Acyl-CoA N-acyltransferases (Nat)
NRXN2	9379	genome.wustl.edu	37	11	64434811	64434811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015080.2	-1	reviewed	p.G570E	1.000	106	0%	95	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SF1	7536	genome.wustl.edu	37	11	64537753	64537753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004630.3	-1	reviewed	p.D122N	1.000	57	0%	109	24.8%	43	20.9%	benign(0.061)	tolerated(1)	neutral(0.004)	NULL
GPHA2	170589	genome.wustl.edu	37	11	64702872	64702872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130769.3	-1	validated	p.A21S	0.078	14	0%	12	50%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	NULL
C11orf85	283129	genome.wustl.edu	37	11	64708098	64708098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037225.1	-1	predicted	p.N165S	0.992	153	0%	189	13.2%	0	-	benign(0.224)	tolerated(1)	neutral(0.022)	NULL
C11orf85	283129	genome.wustl.edu	37	11	64717285	64717285	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037225.1	-1	predicted	p.I93	0.314	131	0%	125	16%	0	-	-	-	-	NULL
SLC22A20	440044	genome.wustl.edu	37	11	65009497	65009497	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004326.4	+1	validated	p.E482*	0.047	17	0%	22	27.3%	0	-	-	-	-	NULL
POLA2	23649	genome.wustl.edu	37	11	65049163	65049163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002689.2	+1	provisional	p.N308S	1.000	95	0%	101	24.8%	20	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNX32	254122	genome.wustl.edu	37	11	65616737	65616737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000435160	+1	known	p.F4C	0.001	8	0.000	22	0.273	0	-	-	-	-	NULL
ACTN3	89	genome.wustl.edu	37	11	66318769	66318769	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001104.1	+1	reviewed	p.I69	1.000	33	0%	28	25%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
CTSF	8722	genome.wustl.edu	37	11	66335104	66335104	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003793.3	-1	reviewed	p.L114	0.000	97	0%	95	28.4%	3	0%	-	-	-	NULL
CCDC87	55231	genome.wustl.edu	37	11	66358013	66358013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018219.2	-1	validated	p.R825Q	0.614	74	0%	86	18.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM4	5936	genome.wustl.edu	37	11	66407237	66407237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002896.2	+1	validated	p.R19C	1.000	245	0%	252	29%	53	3.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM4	5936	genome.wustl.edu	37	11	66407465	66407465	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002896.2	+1	validated	p.R95*	1.000	313	0%	289	29.8%	137	8.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM4B	83759	genome.wustl.edu	37	11	66436583	66436583	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031492.2	-1	provisional	p.R198*	1.000	88	0%	95	32.6%	24	12.5%	-	-	-	NULL
RBM4B	83759	genome.wustl.edu	37	11	66436756	66436756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031492.2	-1	provisional	p.R140I	1.000	78	0%	86	30.2%	14	7.1%	possibly_damaging(0.616)	deleterious(0.04)	deleterious(0.564)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ADRBK1	156	genome.wustl.edu	37	11	67052657	67052657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001619.3	+1	reviewed	p.D635N	0.997	32	0%	18	44.4%	243	26.7%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SUV420H1	51111	genome.wustl.edu	37	11	67939171	67939171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017635.3	-1	reviewed	p.R220Q	1.000	72	0%	72	30.6%	4	0%	probably_damaging(0.986)	tolerated(0.13)	deleterious(0.687)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SUV420H1	51111	genome.wustl.edu	37	11	67953383	67953383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017635.3	-1	reviewed	p.S58L	0.330	105	0%	133	26.3%	14	35.7%	possibly_damaging(0.637)	tolerated(0.08)	deleterious(0.523)	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68337215	68337215	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018312.4	+1	validated	e8-1	1.000	234	0%	202	23.8%	0	-	-	-	-	-
MTL5	9633	genome.wustl.edu	37	11	68506237	68506237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004923.3	-1	reviewed	p.S283L	0.009	165	0%	184	25.5%	5	60%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
CPT1A	1374	genome.wustl.edu	37	11	68574944	68574944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001876.3	-1	reviewed	p.K148N	0.003	17	0%	33	24.2%	18	33.3%	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	NULL
CCND1	595	genome.wustl.edu	37	11	69462881	69462881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053056.2	+1	reviewed	p.F232L	0.999	26	0%	11	36.4%	1026	95.1%	benign(0.007)	tolerated(1)	-	HMMPfam_Cyclin_C,superfamily_Cyclin-like
FGF4	2249	genome.wustl.edu	37	11	69588179	69588179	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002007.2	-1	reviewed	p.K173	0.000	50	0%	37	16.2%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
DHCR7	1717	genome.wustl.edu	37	11	71146427	71146427	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001360.2	-1	reviewed	p.I474	1.000	25	0%	16	31.2%	23	43.4%	-	-	-	HMMPfam_ERG4_ERG24
NADSYN1	55191	genome.wustl.edu	37	11	71164383	71164383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018161.4	+1	validated	p.Q14P	1.000	7	0.000	16	0.375	4	75%	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
NUMA1	4926	genome.wustl.edu	37	11	71715128	71715128	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006185.2	-1	validated	p.S2047	0.033	57	0%	31	29%	417	45.8%	-	-	-	NULL
NUMA1	4926	genome.wustl.edu	37	11	71724098	71724098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006185.2	-1	validated	p.R1484H	0.945	64	0%	78	19.2%	164	29.2%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CLPB	81570	genome.wustl.edu	37	11	72013354	72013354	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030813.3	-1	provisional	p.R417	0.992	111	0%	82	30.5%	10	40%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
C2CD3	26005	genome.wustl.edu	37	11	73814499	73814499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015531.4	-1	validated	p.H753N	0.000	378	0%	349	24.9%	1	0%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
RNF169	254225	genome.wustl.edu	37	11	74545744	74545744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098638.1	+1	validated	p.R289M	1.000	139	0%	91	20.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
XRRA1	143570	genome.wustl.edu	37	11	74562192	74562192	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182969.1	-1	validated	p.R433*	1.000	66	0%	56	37.5%	2	0%	-	-	-	superfamily_L domain-like
MOGAT2	80168	genome.wustl.edu	37	11	75438666	75438666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025098.2	+1	provisional	p.D153Y	1.000	225	0%	156	25.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DAGAT
DGAT2	84649	genome.wustl.edu	37	11	75507472	75507472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032564.3	+1	validated	p.E177K	1.000	86	0%	92	27.2%	5	40%	possibly_damaging(0.694)	tolerated(0.07)	deleterious(0.568)	HMMPfam_DAGAT
PRKRIR	5612	genome.wustl.edu	37	11	76063566	76063566	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004705.2	-1	provisional	p.N210H	1.000	153	0%	153	39.2%	0	-	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76162954	76162954	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020193.3	+1	validated	p.L41	1.000	105	0%	77	29.9%	1	0%	-	-	-	HMMPfam_ENT
C11orf30	56946	genome.wustl.edu	37	11	76257149	76257149	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020193.3	+1	validated	p.V1194	0.969	163	0%	100	18%	8	62.5%	-	-	-	NULL
MYO7A	4647	genome.wustl.edu	37	11	76870492	76870492	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000260.3	+1	reviewed	e9-1	1.000	43	0%	63	23.8%	0	-	-	-	-	-
GDPD4	220032	genome.wustl.edu	37	11	76956435	76956435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182833.1	-1	provisional	p.K326T	0.853	241	0%	181	28.2%	0	-	probably_damaging(0.999)	tolerated(0.55)	deleterious(0.497)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
GDPD4	220032	genome.wustl.edu	37	11	76979974	76979974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182833.1	-1	provisional	p.P207S	1.000	356	0%	393	29.5%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
PAK1	5058	genome.wustl.edu	37	11	77054886	77054886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128620.1	-1	reviewed	p.N326H	1.000	283	0%	378	16.4%	54	18.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ALG8	79053	genome.wustl.edu	37	11	77824971	77824971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024079.4	-1	reviewed	p.F246L	1.000	113	0%	95	27.4%	26	42.3%	benign(0)	tolerated(1)	-	HMMPfam_Alg6_Alg8
LOC100289388	100289388	genome.wustl.edu	37	11	77885040	77885040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343083.1	+1	model	p.V104I	1.000	235	0%	213	35.7%	0	-	-	-	-	NULL
NARS2	79731	genome.wustl.edu	37	11	78147847	78147847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024678.4	-1	validated	p.R435C	1.000	446	0%	453	28.3%	35	34.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
NARS2	79731	genome.wustl.edu	37	11	78270653	78270653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024678.4	-1	validated	p.V176L	0.701	249	0%	210	33.3%	6	33.3%	benign(0.016)	tolerated(0.29)	neutral(0.030)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
ODZ4	26011	genome.wustl.edu	37	11	78383318	78383318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098816.2	-1	validated	p.K1851N	1.000	126	0%	52	23.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78431428	78431428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098816.2	-1	validated	p.D1270Y	1.000	181	0%	169	31.4%	0	-	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	superfamily_SSF101898,superfamily_TolB_C
DLG2	1740	genome.wustl.edu	37	11	83177766	83177766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142699.1	-1	reviewed	p.S905Y	1.000	255	0%	224	19.2%	0	-	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC89	220388	genome.wustl.edu	37	11	85396652	85396652	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152723.1	-1	provisional	p.A174	0.317	144	0%	216	27.3%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85436581	85436581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206927.2	-1	reviewed	p.D307Y	0.000	373	0%	313	26.5%	0	-	benign(0.354)	deleterious(0.03)	deleterious(0.476)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85437200	85437200	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206927.2	-1	reviewed	p.I100	0.035	375	0%	284	28.9%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85437427	85437427	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206927.2	-1	reviewed	p.E25*	0.739	213	0%	151	27.2%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85468684	85468684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032943.3	-1	reviewed	p.E29K	1.000	668	0%	758	23.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_FYVE/PHD zinc finger
CTSC	1075	genome.wustl.edu	37	11	88033707	88033707	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001814.4	-1	reviewed	p.R250*	1.000	210	0%	172	26.2%	69	0%	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
GRM5	2915	genome.wustl.edu	37	11	88242657	88242657	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143831.2	-1	reviewed	p.S914	0.014	12	0%	15	33.3%	0	-	-	-	-	NULL
GRM5	2915	genome.wustl.edu	37	11	88742212	88742212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000393294	-1	known	p.S239Y	0.001	30	0%	24	20.8%	0	-	benign(0.057)	deleterious(0)	neutral(0.448)	NULL
TYR	7299	genome.wustl.edu	37	11	88911926	88911926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000372.4	+1	reviewed	p.F269V	1.000	203	0%	192	26.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tyrosinase,superfamily_Di-copper centre-containing domain
ENSG00000234376	0	genome.wustl.edu	37	11	89486234	89486234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000411859	-1	known	p.E301*	0.876	204	0%	226	14.2%	0	-	-	-	-	superfamily_HMG-box
ENSG00000204456	0	genome.wustl.edu	37	11	89499882	89499882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000375974	-1	known	p.L162I	0.134	285	0%	281	20.3%	0	-	-	-	-	HMMPfam_SPRY
NAALAD2	10003	genome.wustl.edu	37	11	89868834	89868834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005467.3	+1	reviewed	p.L64I	1.000	136	0%	113	29.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89880500	89880500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005467.3	+1	reviewed	p.S66Y	1.000	132	0%	110	28.2%	0	-	benign(0.017)	tolerated(1)	neutral(0.001)	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89911121	89911121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005467.3	+1	reviewed	p.S565Y	0.996	237	0%	185	25.4%	0	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	superfamily_Zn-dependent exopeptidases
CHORDC1	26973	genome.wustl.edu	37	11	89936573	89936573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012124.2	-1	validated	p.R231I	1.000	147	0%	112	30.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HSP20-like chaperones,HMMPfam_CS
CHORDC1	26973	genome.wustl.edu	37	11	89947197	89947197	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012124.2	-1	validated	p.I106	0.998	178	0%	160	24.4%	2	50%	-	-	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92085930	92085930	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.R218*	0.986	234	0%	209	34.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92086173	92086173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.E299K	0.996	129	0%	147	21.1%	0	-	possibly_damaging(0.659)	tolerated(0.83)	neutral(0.233)	superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92087832	92087832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.Q852K	1.000	150	0%	143	34.3%	0	-	benign(0.096)	tolerated(0.87)	neutral(0.007)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92088385	92088385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.E1036G	1.000	131	0%	112	25.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases
FAT3	120114	genome.wustl.edu	37	11	92495264	92495264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.F1304L	1.000	604	0%	582	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92534402	92534402	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.S2741	1.000	88	0%	52	23.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92577516	92577516	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008781.2	+1	validated	p.F3661	0.771	65	0%	73	32.9%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
SLC36A4	120103	genome.wustl.edu	37	11	92895893	92895893	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152313.2	-1	provisional	p.L339*	1.000	154	0%	117	21.4%	0	-	-	-	-	HMMPfam_Aa_trans
CCDC67	159989	genome.wustl.edu	37	11	93127693	93127693	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181645.3	+1	validated	p.I370	1.000	61	0%	80	33.8%	0	-	-	-	-	NULL
TAF1D	79101	genome.wustl.edu	37	11	93471479	93471479	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024116.3	-1	validated	p.K85	0.066	173	0%	203	32%	5	60%	-	-	-	NULL
MED17	9440	genome.wustl.edu	37	11	93526934	93526934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004268.4	+1	reviewed	p.K226N	1.000	92	0%	82	24.4%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_DUF2364
AMOTL1	154810	genome.wustl.edu	37	11	94533475	94533475	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130847.2	+1	reviewed	p.T373	0.844	406	0%	389	28.5%	4	0%	-	-	-	NULL
ENDOD1	23052	genome.wustl.edu	37	11	94862071	94862071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015036.2	+1	validated	p.E277D	1.000	196	0%	198	25.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF54060
SESN3	143686	genome.wustl.edu	37	11	94922974	94922974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144665.2	-1	provisional	p.R165Q	1.000	195	0%	188	30.9%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_PA26
MAML2	84441	genome.wustl.edu	37	11	95825221	95825221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032427.1	-1	validated	p.Q658H	0.104	16	0%	15	33.3%	7	57.1%	unknown(0)	deleterious(0)	-	NULL
MAML2	84441	genome.wustl.edu	37	11	95825993	95825993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032427.1	-1	validated	p.S401L	0.998	44	0%	46	23.9%	0	-	unknown(0)	deleterious(0.03)	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96106628	96106628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024725.3	-1	validated	p.S332Y	1.000	117	0%	122	32%	1	0%	possibly_damaging(0.907)	tolerated(0.06)	deleterious(0.683)	NULL
CCDC82	79780	genome.wustl.edu	37	11	96117770	96117770	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024725.3	-1	validated	p.E48*	0.998	116	0%	152	17.8%	0	-	-	-	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96117820	96117820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024725.3	-1	validated	p.R31I	1.000	92	0%	136	33.8%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CNTN5	53942	genome.wustl.edu	37	11	100126592	100126592	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014361.2	+1	reviewed	p.S702	1.000	230	0%	208	26.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KIAA1377	57562	genome.wustl.edu	37	11	101793445	101793445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020802.2	+1	validated	p.R68*	1.000	59	0%	47	29.8%	0	-	-	-	-	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101863517	101863517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020802.2	+1	validated	p.E1085*	1.000	69	0%	62	27.4%	1	0%	-	-	-	NULL
YAP1	10413	genome.wustl.edu	37	11	101984930	101984930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130145.1	+1	reviewed	p.H126R	1.000	112	0%	93	31.2%	7	85.7%	probably_damaging(0.992)	tolerated(0.21)	deleterious(0.491)	NULL
BIRC2	329	genome.wustl.edu	37	11	102233636	102233636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001166.3	+1	reviewed	p.F335L	1.000	156	0%	126	36.5%	9	66.6%	benign(0.021)	deleterious(0.01)	neutral(0.407)	HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,superfamily_SSF57924
MMP8	4317	genome.wustl.edu	37	11	102593330	102593330	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002424.2	-1	reviewed	p.I59	0.003	199	0.5%	238	15.1%	0	-	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD_like
MMP1	4312	genome.wustl.edu	37	11	102661190	102661190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002421.3	-1	reviewed	p.L455V	0.001	113	0%	69	20.3%	0	-	benign(0)	tolerated(1)	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
MMP13	4322	genome.wustl.edu	37	11	102815082	102815082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002427.3	-1	reviewed	p.F443L	1.000	300	0%	209	26.3%	0	-	benign(0.005)	tolerated(0.18)	neutral(0.056)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
DYNC2H1	79659	genome.wustl.edu	37	11	102995846	102995846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.R560Q	0.960	79	0%	67	22.4%	0	-	benign(0.051)	tolerated(0.06)	neutral(0.326)	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103004395	103004395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.N689H	1.000	123	0%	100	31%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103005064	103005064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.M707I	1.000	216	0%	201	24.9%	0	-	benign(0.212)	tolerated(0.24)	neutral(0.058)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103052551	103052551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.R2138I	0.999	49	0%	43	30.2%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC2H1	79659	genome.wustl.edu	37	11	103128375	103128375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.S3507R	1.000	71	0%	43	11.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103325961	103325961	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080463.1	+1	reviewed	p.L4175	0.810	124	0.8%	72	26.4%	1	0%	-	-	-	HMMPfam_Dynein_heavy
GRIA4	2893	genome.wustl.edu	37	11	105481745	105481745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000829.3	+1	reviewed	p.Q7H	1.000	59	0%	55	10.9%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
GRIA4	2893	genome.wustl.edu	37	11	105483060	105483060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000829.3	+1	reviewed	p.F49C	1.000	146	0%	150	24.7%	0	-	probably_damaging(0.968)	tolerated(0.18)	neutral(0.466)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105795445	105795445	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000829.3	+1	reviewed	p.L599	1.000	151	0%	120	18.3%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
KBTBD3	143879	genome.wustl.edu	37	11	105924013	105924013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152433.3	-1	validated	p.A468V	1.000	122	0%	115	24.3%	2	0%	possibly_damaging(0.799)	tolerated(0.08)	deleterious(0.601)	superfamily_Galactose oxidase central domain
KBTBD3	143879	genome.wustl.edu	37	11	105924846	105924846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152433.3	-1	validated	p.F190L	1.000	78	0%	104	18.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_BACK
AASDHPPT	60496	genome.wustl.edu	37	11	105950307	105950307	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015423.2	+1	reviewed	p.S99	0.369	128	0%	104	25%	8	37.5%	-	-	-	superfamily_4-PPT_transf
CWF19L2	143884	genome.wustl.edu	37	11	107263518	107263518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152434.2	-1	validated	p.R574I	0.999	151	0%	107	33.6%	3	100%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
NPAT	4863	genome.wustl.edu	37	11	108043709	108043709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002519.2	-1	validated	p.E668*	1.000	193	0%	151	29.1%	0	-	-	-	-	NULL
NPAT	4863	genome.wustl.edu	37	11	108056019	108056019	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002519.2	-1	validated	p.K282	0.884	56	0%	48	27.1%	0	-	-	-	-	NULL
NPAT	4863	genome.wustl.edu	37	11	108057211	108057211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002519.2	-1	validated	p.K242Q	1.000	60	0%	58	37.9%	1	0%	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	NULL
ATM	472	genome.wustl.edu	37	11	108115600	108115600	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000051.3	+1	reviewed	p.R250*	0.997	180	0%	149	28.2%	0	-	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108203492	108203492	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000051.3	+1	reviewed	p.R2598*	1.000	104	0%	98	30.6%	1	0%	-	-	-	superfamily_ARM repeat
C11orf65	160140	genome.wustl.edu	37	11	108263972	108263972	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152587.3	-1	validated	p.E232*	1.000	266	0%	189	31.7%	2	0%	-	-	-	NULL
C11orf65	160140	genome.wustl.edu	37	11	108302475	108302475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152587.3	-1	validated	p.E58*	1.000	260	0%	184	13%	0	-	-	-	-	NULL
KDELC2	143888	genome.wustl.edu	37	11	108361799	108361799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153705.4	-1	validated	p.F100L	1.000	79	0%	84	26.2%	1	100%	benign(0.156)	tolerated(0.11)	neutral(0.286)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
EXPH5	23086	genome.wustl.edu	37	11	108382340	108382340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015065.2	-1	validated	p.Q1298H	0.000	165	0%	157	21%	0	-	benign(0.31)	deleterious(0.01)	deleterious(0.502)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108384596	108384596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015065.2	-1	validated	p.E546D	0.012	261	0%	187	16%	0	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
RDX	5962	genome.wustl.edu	37	11	110108359	110108359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002906.3	-1	reviewed	p.R370Q	0.717	263	0%	168	22%	1	0%	benign(0.019)	tolerated(0.45)	neutral(0.013)	HMMPfam_ERM
ARHGAP20	57569	genome.wustl.edu	37	11	110461423	110461423	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020809.2	-1	validated	p.V418	0.000	139	0%	81	28.4%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LOC120364	120364	genome.wustl.edu	37	11	110658959	110658959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_062025.5	-1	model	p.K247N	0.044	97	0%	104	34.6%	0	-	-	-	-	NULL
LOC120364	120364	genome.wustl.edu	37	11	110659360	110659360	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_062025.5	-1	model	p.E114*	1.000	153	0%	127	20.5%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LOC120364	120364	genome.wustl.edu	37	11	110659416	110659416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_062025.5	-1	model	p.S95Y	0.937	143	0.7%	126	23%	0	-	-	-	-	NULL
DLAT	1737	genome.wustl.edu	37	11	111899361	111899361	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001931.4	+1	reviewed	p.G168	0.991	130	0%	139	25.2%	0	-	-	-	-	superfamily_Single hybrid motif
TTC12	54970	genome.wustl.edu	37	11	113209523	113209523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017868.3	+1	validated	p.E202*	1.000	398	0%	397	28%	1	100%	-	-	-	HMMPfam_TPR_1,PatternScan_CPSASE_2,superfamily_ARM-type_fold,HMMSmart_TPR,superfamily_SSF48452
ANKK1	255239	genome.wustl.edu	37	11	113265662	113265662	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178510.1	+1	reviewed	p.F164	0.990	44	0%	48	12.5%	1	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ZW10	9183	genome.wustl.edu	37	11	113610102	113610102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004724.2	-1	reviewed	p.E529G	1.000	140	0.7%	164	26.2%	10	20%	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	HMMPfam_Zw10
LOC390251	390251	genome.wustl.edu	37	11	113660804	113660804	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_016610.3	+1	model	NULL	0.624	5	0.000	7	0.571	0	-	-	-	-	-
HTR3A	3359	genome.wustl.edu	37	11	113848610	113848610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213621.3	+1	reviewed	p.S62F	1.000	114	0%	66	36.4%	0	-	benign(0.018)	tolerated(0.1)	neutral(0.287)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
FAM55B	120406	genome.wustl.edu	37	11	114569455	114569455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182495.5	+1	validated	p.R274I	0.014	105	0%	136	25%	1	0%	benign(0.071)	tolerated(0.18)	neutral(0.061)	NULL
ZNF259	8882	genome.wustl.edu	37	11	116658317	116658317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003904.3	-1	provisional	p.E72*	1.000	37	0%	90	30%	11	9%	-	-	-	HMMPfam_zf-ZPR1,HMMSmart_Zpr1
SIDT2	51092	genome.wustl.edu	37	11	117052604	117052604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040455.1	+1	validated	p.F129L	1.000	57	0%	55	36.4%	5	60%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117063357	117063357	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040455.1	+1	validated	p.P683	0.999	30	0%	30	36.7%	33	27.2%	-	-	-	NULL
TAGLN	6876	genome.wustl.edu	37	11	117074094	117074094	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001522.1	+1	reviewed	p.P84	0.994	90	0%	82	15.9%	287	0.6%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PCSK7	9159	genome.wustl.edu	37	11	117077469	117077469	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004716.2	-1	reviewed	p.F642	1.000	152	0%	174	19%	38	7.8%	-	-	-	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117389196	117389196	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020693.2	-1	provisional	p.R559*	1.000	70	0%	78	30.8%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ENSG00000244817	0	genome.wustl.edu	37	11	118183041	118183041	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501549	-1	known	NULL	0.000	144	0%	127	28.3%	0	-	-	-	-	-
UBE4A	9354	genome.wustl.edu	37	11	118239407	118239407	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004788.2	+1	reviewed	p.F61	1.000	525	0%	559	18.8%	1	0%	-	-	-	NULL
UBE4A	9354	genome.wustl.edu	37	11	118243914	118243914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004788.2	+1	reviewed	p.R286*	0.997	173	0%	128	26.6%	0	-	-	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118352561	118352561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005933.2	+1	validated	p.K1256Q	1.000	192	0%	223	27.8%	2	0%	possibly_damaging(0.922)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118375452	118375452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005933.2	+1	validated	p.P2946S	0.970	285	0%	271	29.2%	0	-	benign(0)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118390405	118390405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005933.2	+1	validated	p.A3737V	1.000	137	0%	165	26.7%	5	100%	probably_damaging(0.99)	-	-	HMMPfam_FYRC,HMMSmart_SM00542
DDX6	1656	genome.wustl.edu	37	11	118636040	118636040	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004397.4	-1	reviewed	p.E175*	1.000	555	0%	559	19.5%	6	0%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
HYOU1	10525	genome.wustl.edu	37	11	118925751	118925751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130991.1	-1	reviewed	p.E147D	1.000	60	0%	77	26%	17	23.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
HMBS	3145	genome.wustl.edu	37	11	118959935	118959935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000190.3	+1	reviewed	p.E73D	1.000	167	0%	147	23.1%	9	66.6%	probably_damaging(0.999)	tolerated(0.93)	deleterious(0.490)	HMMPfam_Porphobil_deam,superfamily_Periplasmic binding protein-like II
MCAM	4162	genome.wustl.edu	37	11	119183659	119183659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006500.2	-1	validated	p.R187Q	0.951	49	0%	41	26.8%	7	57.1%	unknown(0)	tolerated(0.06)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
LOC100130353	100130353	genome.wustl.edu	37	11	119274568	119274568	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078444.1	+1	model	NULL	0.067	79	0%	48	22.9%	0	-	-	-	-	-
POU2F3	25833	genome.wustl.edu	37	11	120178282	120178282	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014352.2	+1	validated	p.I288	0.509	124	0%	133	24.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ARHGEF12	23365	genome.wustl.edu	37	11	120300510	120300510	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015313.1	+1	reviewed	p.E251	1.000	242	0%	232	28%	0	-	-	-	-	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120308042	120308042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015313.1	+1	reviewed	p.R317I	1.000	250	0%	201	27.4%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120317210	120317210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015313.1	+1	reviewed	p.D482Y	1.000	116	0%	111	26.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS
ARHGEF12	23365	genome.wustl.edu	37	11	120322337	120322337	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015313.1	+1	reviewed	p.E654*	0.998	55	0%	51	27.5%	3	0%	-	-	-	NULL
TECTA	7007	genome.wustl.edu	37	11	120996030	120996030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005422.2	+1	reviewed	p.S408Y	1.000	119	0%	222	21.2%	0	-	possibly_damaging(0.836)	tolerated(0.35)	neutral(0.340)	HMMPfam_VWD,HMMSmart_SM00216
CRTAM	56253	genome.wustl.edu	37	11	122738794	122738794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019604.2	+1	validated	p.E346D	1.000	64	0%	58	19%	1	0%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122805768	122805768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024806.2	+1	validated	p.N540S	0.965	255	0%	175	32%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
BSX	390259	genome.wustl.edu	37	11	122850078	122850078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098169.1	-1	validated	p.F117S	1.000	18	0%	48	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CLMP	79827	genome.wustl.edu	37	11	122954482	122954482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024769.2	-1	validated	p.E154D	0.999	107	0%	130	29.2%	0	-	benign(0.156)	tolerated(0.08)	neutral(0.314)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
OR10G4	390264	genome.wustl.edu	37	11	123887166	123887166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004462.1	+1	provisional	p.K295N	0.134	234	0%	124	20.2%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124120989	124120989	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000341493	+1	known	p.C189*	0.194	377	0%	399	30.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D2	283160	genome.wustl.edu	37	11	124189907	124189907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002918.1	-1	provisional	p.L63I	0.894	472	0%	482	22.8%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B3	390271	genome.wustl.edu	37	11	124266944	124266944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005467.1	-1	provisional	p.F102L	0.902	279	0%	313	29.7%	0	-	possibly_damaging(0.657)	deleterious(0.01)	deleterious(0.637)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B4	283162	genome.wustl.edu	37	11	124293973	124293973	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005196.1	-1	provisional	p.G265	0.000	133	0%	116	30.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8B8	26493	genome.wustl.edu	37	11	124310957	124310957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012378.1	-1	provisional	p.V9M	0.000	235	0.4%	202	28.7%	0	-	benign(0.043)	deleterious(0.01)	neutral(0.408)	superfamily_Family A G protein-coupled receptor-like
OR8B12	219858	genome.wustl.edu	37	11	124413511	124413511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005195.1	-1	provisional	p.E14K	0.000	189	0%	188	22.9%	0	-	benign(0.025)	tolerated(0.33)	neutral(0.025)	superfamily_Family A G protein-coupled receptor-like
HEPN1	641654	genome.wustl.edu	37	11	124789725	124789725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037558.2	+1	provisional	p.G27R	0.001	80	0%	62	19.4%	0	-	possibly_damaging(0.931)	-	-	NULL
HEPACAM	220296	genome.wustl.edu	37	11	124793632	124793632	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152722.4	-1	validated	p.T234	0.934	82	0%	84	29.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
HEPACAM	220296	genome.wustl.edu	37	11	124794791	124794791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152722.4	-1	validated	p.V87A	1.000	81	0%	72	25%	0	-	possibly_damaging(0.889)	deleterious(0.04)	deleterious(0.698)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ACRV1	56	genome.wustl.edu	37	11	125542516	125542516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001612.4	-1	reviewed	p.R257Q	0.537	431	0%	498	30.3%	0	-	possibly_damaging(0.439)	tolerated(0.21)	neutral(0.187)	NULL
PUS3	83480	genome.wustl.edu	37	11	125765268	125765268	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031307.3	-1	validated	p.C265	0.996	115	0%	104	27.9%	8	50%	-	-	-	HMMPfam_PseudoU_synth_1,superfamily_PsdUridine_synth_cat_dom
KCNJ1	3758	genome.wustl.edu	37	11	128709962	128709962	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000220.2	-1	reviewed	p.R78S	0.980	132	0%	177	26%	0	-	possibly_damaging(0.705)	deleterious(0)	deleterious(0.699)	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
ARHGAP32	9743	genome.wustl.edu	37	11	128840352	128840352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142685.1	-1	validated	p.E1572K	0.974	79	0%	35	20%	12	25%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128840628	128840628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142685.1	-1	validated	p.D1480N	0.995	78	0%	63	33.3%	11	9%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
PRDM10	56980	genome.wustl.edu	37	11	129784891	129784891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020228.2	-1	reviewed	p.R854Q	1.000	194	0%	186	30.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRDM10	56980	genome.wustl.edu	37	11	129788528	129788528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020228.2	-1	reviewed	p.K711T	1.000	357	0.3%	402	19.7%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADAMTS8	11095	genome.wustl.edu	37	11	130275705	130275705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007037.4	-1	reviewed	p.F806L	1.000	286	0%	279	30.5%	67	64.1%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMPfam_ADAM_spacer1
IGSF9B	22997	genome.wustl.edu	37	11	133795684	133795684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014987.1	-1	validated	p.D662N	0.997	24	0%	13	30.8%	0	-	possibly_damaging(0.762)	tolerated(0.35)	neutral(0.303)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
JAM3	83700	genome.wustl.edu	37	11	134014272	134014272	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032801.3	+1	reviewed	p.I176	0.559	205	0%	201	32.3%	3	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ACAD8	27034	genome.wustl.edu	37	11	134126991	134126991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014384.2	+1	reviewed	p.P74S	1.000	71	0%	77	23.4%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
KDM5A	5927	genome.wustl.edu	37	12	406220	406220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042603.1	-1	reviewed	p.K1407N	1.000	196	0%	192	30.7%	1	100%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
KDM5A	5927	genome.wustl.edu	37	12	427491	427491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042603.1	-1	reviewed	p.R893Q	1.000	396	0%	235	20%	5	0%	benign(0.06)	tolerated(0.58)	neutral(0.009)	HMMPfam_PLU-1
WNK1	65125	genome.wustl.edu	37	12	994504	994504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018979.3	+1	reviewed	p.S1512R	1.000	443	0.2%	385	29.6%	16	50%	unknown(0)	deleterious(0)	-	NULL
ADIPOR2	79602	genome.wustl.edu	37	12	1895195	1895195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024551.2	+1	validated	p.R373H	1.000	220	0%	195	39.5%	2	50%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1988187	1988187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172364.4	-1	reviewed	p.L527I	1.000	32	0%	44	36.4%	0	-	probably_damaging(0.993)	tolerated(0.34)	deleterious(0.473)	HMMPfam_Cache_1
CACNA2D4	93589	genome.wustl.edu	37	12	2016688	2016688	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172364.4	-1	reviewed	p.V233	0.881	57	0%	55	25.5%	0	-	-	-	-	HMMPfam_VWA_N
DCP1B	196513	genome.wustl.edu	37	12	2062038	2062038	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152640.3	-1	validated	p.F356	0.004	155	0%	106	28.3%	5	40%	-	-	-	NULL
CACNA1C	775	genome.wustl.edu	37	12	2717779	2717779	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199460.2	+1	reviewed	p.I1173	0.984	28	0%	39	33.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2760764	2760764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001129829.1	+1	reviewed	p.L1324F	0.000	75	0%	93	30.1%	0	-	benign(0.113)	deleterious(0.04)	neutral(0.358)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TSPAN9	10867	genome.wustl.edu	37	12	3387672	3387672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006675.4	+1	reviewed	p.S50L	1.000	35	0%	52	26.9%	25	44%	probably_damaging(0.986)	tolerated(0.39)	neutral(0.451)	HMMPfam_Tetraspannin
EFCAB4B	84766	genome.wustl.edu	37	12	3782661	3782661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144958.1	-1	validated	p.L208F	1.000	163	0%	110	26.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PARP11	57097	genome.wustl.edu	37	12	3921314	3921314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020367.4	-1	validated	p.P331L	1.000	396	0%	336	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_ADP-ribosylation
C12orf4	57102	genome.wustl.edu	37	12	4626353	4626353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020374.2	-1	predicted	p.F346V	1.000	390	0%	229	23.6%	4	75%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DUF2362
GALNT8	26290	genome.wustl.edu	37	12	4835763	4835763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017417.1	+1	reviewed	p.D93Y	0.000	186	0%	167	22.2%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
GALNT8	26290	genome.wustl.edu	37	12	4853685	4853685	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017417.1	+1	reviewed	p.E227*	1.000	124	0%	98	30.6%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
KCNA6	3742	genome.wustl.edu	37	12	4919849	4919849	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002235.3	+1	reviewed	p.V214	0.000	78	0%	86	20.9%	0	-	-	-	-	superfamily_SSF81324
KCNA5	3741	genome.wustl.edu	37	12	5154291	5154291	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002234.2	+1	reviewed	p.I326	0.184	37	0%	45	24.4%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
NTF3	4908	genome.wustl.edu	37	12	5604142	5604142	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102654.1	+1	reviewed	p.I267	0.689	76	1.3%	101	23.8%	0	-	-	-	-	HMMPfam_NGF,superfamily_SSF57501
ANO2	57101	genome.wustl.edu	37	12	5860027	5860027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020373.2	-1	validated	p.A385S	1.000	62	0%	49	46.9%	0	-	possibly_damaging(0.49)	tolerated(0.07)	deleterious(0.482)	NULL
VWF	7450	genome.wustl.edu	37	12	6127975	6127975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000552.3	-1	reviewed	p.V1537I	0.852	67	0%	68	22.1%	1	0%	benign(0.001)	tolerated(0.94)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWF	7450	genome.wustl.edu	37	12	6184581	6184581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000552.3	-1	reviewed	p.C265Y	0.772	21	0%	31	45.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C8
NCAPD2	9918	genome.wustl.edu	37	12	6626175	6626175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014865.3	+1	validated	p.R390Q	0.974	190	0%	228	24.1%	6	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_ARM repeat
LAG3	3902	genome.wustl.edu	37	12	6884498	6884498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002286.5	+1	reviewed	p.P281S	1.000	133	0%	138	29.7%	105	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CD4	920	genome.wustl.edu	37	12	6909520	6909520	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000616.3	+1	validated	p.K33*	0.002	72	0%	78	30.8%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
USP5	8078	genome.wustl.edu	37	12	6970645	6970645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098536.1	+1	validated	p.E513K	0.938	32	0%	53	30.2%	34	26.4%	benign(0.011)	tolerated(0.19)	neutral(0.050)	HMMPfam_UCH,superfamily_Cysteine proteinases
TPI1	7167	genome.wustl.edu	37	12	6978921	6978921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000365.5	+1	reviewed	p.T176N	1.000	54	0%	92	23.9%	1377	31.2%	benign(0.081)	deleterious(0)	neutral(0.451)	HMMPfam_TIM,superfamily_Triosephosphate isomerase (TIM)
C1S	716	genome.wustl.edu	37	12	7174372	7174372	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001734.3	+1	reviewed	p.S339	0.860	115	0%	100	24%	74	6.7%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
PEX5	5830	genome.wustl.edu	37	12	7360319	7360319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001131023.1	+1	reviewed	p.R359Q	0.999	113	0%	104	28.8%	7	28.5%	benign(0.01)	tolerated(0.36)	neutral(0.021)	superfamily_SSF48452
CD163L1	283316	genome.wustl.edu	37	12	7527243	7527243	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174941.4	-1	reviewed	p.S1068	0.099	159	0%	203	32%	6	0%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7548800	7548800	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174941.4	-1	reviewed	p.L647	0.913	347	0.3%	286	35%	0	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7639969	7639969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004244.4	-1	validated	p.S679F	0.999	136	0%	101	29.7%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7655079	7655079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004244.4	-1	validated	p.S43Y	0.921	99	0%	97	15.5%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
APOBEC1	339	genome.wustl.edu	37	12	7802217	7802217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001644.3	-1	reviewed	p.C213G	0.825	90	0%	102	28.4%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
APOBEC1	339	genome.wustl.edu	37	12	7805253	7805253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001644.3	-1	reviewed	p.D75Y	0.001	62	0%	99	31.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
DPPA3	359787	genome.wustl.edu	37	12	7867847	7867847	+	Missense_Mutation	SNP	G	G	A	rs41449345	byCluster;byFrequency	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199286.2	+1	reviewed	p.E51K	0.000	87	0%	66	22.7%	0	-	benign(0.071)	tolerated(1)	neutral(0.005)	NULL
DPPA3	359787	genome.wustl.edu	37	12	7867981	7867981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199286.2	+1	reviewed	p.K95N	0.000	48	0%	64	40.6%	0	-	benign(0.141)	tolerated(0.08)	neutral(0.312)	NULL
NANOGP1	404635	genome.wustl.edu	37	12	8051354	8051354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000316043	+1	known	p.S185Y	0.020	87	0%	135	15.6%	0	-	possibly_damaging(0.741)	tolerated(0.4)	neutral(0.288)	NULL
SLC2A3	6515	genome.wustl.edu	37	12	8083212	8083212	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006931.2	-1	validated	p.G179	0.003	181	0%	154	29.2%	6	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
FOXJ2	55810	genome.wustl.edu	37	12	8197460	8197460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018416.2	+1	validated	p.F241L	1.000	422	0%	471	32.1%	1	100%	benign(0.073)	tolerated(0.8)	neutral(0.005)	NULL
C3AR1	719	genome.wustl.edu	37	12	8212164	8212164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004054.2	-1	validated	p.E206D	0.024	401	0%	461	22.8%	0	-	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CLEC4D	338339	genome.wustl.edu	37	12	8667901	8667901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080387.4	+1	reviewed	p.V33A	0.731	204	0%	191	27.7%	2	0%	benign(0)	tolerated(0.98)	-	NULL
CLEC4E	26253	genome.wustl.edu	37	12	8689804	8689804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014358.2	-1	reviewed	p.F93L	0.997	264	0%	232	28%	2	0%	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00034,superfamily_C-type lectin-like
MFAP5	8076	genome.wustl.edu	37	12	8803172	8803172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003480.2	-1	reviewed	p.E87D	1.000	95	0%	121	20.7%	3	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_MAGP
A2ML1	144568	genome.wustl.edu	37	12	9002850	9002850	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144670.3	+1	validated	p.L738	1.000	307	0%	401	35.7%	0	-	-	-	-	HMMPfam_A2M
A2ML1	144568	genome.wustl.edu	37	12	9013872	9013872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144670.3	+1	validated	p.D1161Y	0.995	251	0%	199	23.6%	0	-	possibly_damaging(0.799)	tolerated(0.07)	deleterious(0.620)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
A2M	2	genome.wustl.edu	37	12	9260133	9260133	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000014.4	-1	reviewed	p.K289T	0.995	153	0%	135	30.4%	7	0%	benign(0.11)	tolerated(0.08)	neutral(0.308)	NULL
PZP	5858	genome.wustl.edu	37	12	9349281	9349281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002864.2	-1	validated	p.L290I	0.319	156	0%	105	21%	0	-	benign(0.222)	deleterious(0.05)	neutral(0.367)	NULL
DDX12P	440081	genome.wustl.edu	37	12	9580249	9580249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000432996	-1	known	p.D488N	1.000	52	0%	62	16.1%	3	0%	-	-	-	NULL
GABARAPL1	23710	genome.wustl.edu	37	12	10373069	10373069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031412.2	+1	validated	p.R67I	1.000	156	0%	157	28%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
KLRC1	3821	genome.wustl.edu	37	12	10602524	10602524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002259.4	-1	reviewed	p.R109I	0.001	54	0%	29	31%	2	0%	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	NULL
TAS2R7	50837	genome.wustl.edu	37	12	10955028	10955028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023919.2	-1	reviewed	p.L48I	0.986	204	0%	213	30.5%	0	-	possibly_damaging(0.859)	deleterious(0.02)	deleterious(0.715)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R14	50840	genome.wustl.edu	37	12	11091325	11091325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023922.1	-1	reviewed	p.R161I	0.003	166	0%	176	15.9%	0	-	benign(0.006)	tolerated(0.11)	neutral(0.272)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R46	259292	genome.wustl.edu	37	12	11214528	11214528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176887.2	-1	validated	p.K122N	0.015	516	0%	443	21.4%	0	-	benign(0.405)	deleterious(0.01)	deleterious(0.536)	HMMPfam_TAS2R,superfamily_SSF81321
PRB3	5544	genome.wustl.edu	37	12	11420893	11420893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000279573	-1	known	p.G97V	0.001	582	0%	675	15.4%	0	-	unknown(0)	deleterious(0.01)	-	NULL
PRB4	5545	genome.wustl.edu	37	12	11461396	11461396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002723.3	-1	reviewed	p.R174Q	0.000	910	0%	819	29.2%	0	-	unknown(0)	tolerated(0.64)	-	NULL
PRB2	653247	genome.wustl.edu	37	12	11548411	11548411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006248.3	-1	validated	p.N18T	0.002	548	0%	418	18.7%	0	-	unknown(0)	tolerated(0.31)	-	NULL
LRP6	4040	genome.wustl.edu	37	12	12284808	12284808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002336.2	-1	reviewed	p.R1306Q	1.000	212	0%	231	26%	4	0%	benign(0.015)	tolerated(0.32)	neutral(0.025)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
LRP6	4040	genome.wustl.edu	37	12	12315300	12315300	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002336.2	-1	reviewed	p.F702	0.005	336	0%	271	27.3%	4	50%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP6	4040	genome.wustl.edu	37	12	12317235	12317235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002336.2	-1	reviewed	p.R675Q	1.000	150	0%	148	29.1%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
MANSC1	54682	genome.wustl.edu	37	12	12491392	12491392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018050.2	-1	validated	p.K109R	1.000	277	0%	320	35.6%	13	15.3%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	HMMPfam_MANEC,HMMSmart_MANEC
DUSP16	80824	genome.wustl.edu	37	12	12630251	12630251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030640.2	-1	reviewed	p.R505Q	0.494	118	0.8%	64	40.6%	10	60%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
GSG1	83445	genome.wustl.edu	37	12	13243734	13243734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080555.1	-1	validated	p.F23V	0.000	82	0%	99	24.2%	0	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	HMMPfam_GSG-1
GRIN2B	2904	genome.wustl.edu	37	12	13716018	13716018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000834.3	-1	reviewed	p.N1385S	1.000	47	0%	35	14.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13716909	13716909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000834.3	-1	reviewed	p.S1088N	1.000	36	0%	40	25%	0	-	probably_damaging(0.99)	tolerated(0.47)	neutral(0.453)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13906427	13906427	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000834.3	-1	reviewed	p.I278	1.000	288	0%	247	28.7%	0	-	-	-	-	superfamily_SSF53822
GRIN2B	2904	genome.wustl.edu	37	12	13906732	13906732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000834.3	-1	reviewed	p.P177T	1.000	438	0%	419	25.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF53822
ATF7IP	55729	genome.wustl.edu	37	12	14576842	14576842	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018179.3	+1	validated	e1-1	1.000	144	0%	82	24.4%	0	-	-	-	-	-
EPS8	2059	genome.wustl.edu	37	12	15784573	15784573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004447.5	-1	reviewed	p.R616I	0.055	121	0%	177	24.3%	45	48.8%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
DERA	51071	genome.wustl.edu	37	12	16185508	16185508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015954.2	+1	validated	p.E224*	1.000	22	0%	26	50%	3	0%	-	-	-	HMMPfam_DeoC,superfamily_SSF51569
PIK3C2G	5288	genome.wustl.edu	37	12	18658308	18658308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004570.4	+1	reviewed	p.N1038T	1.000	46	0%	41	12.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),PatternScan_PI3_4_KINASE_2
PLCZ1	89869	genome.wustl.edu	37	12	18876265	18876265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033123.2	-1	provisional	p.K116T	0.998	118	0%	82	32.9%	0	-	benign(0.12)	tolerated(0.45)	neutral(0.021)	HMMPfam_efhand_like,superfamily_EF-hand
ENSG00000248116	0	genome.wustl.edu	37	12	19460395	19460395	+	RNA	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000510738	+1	novel	NULL	0.363	33	0%	31	22.6%	0	-	-	-	-	-
SLCO1B3	28234	genome.wustl.edu	37	12	21011428	21011428	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019844.2	+1	validated	p.P94	0.870	123	0%	120	34.2%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1B3	28234	genome.wustl.edu	37	12	21032478	21032478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019844.2	+1	validated	p.S415L	0.000	167	0.6%	154	29.9%	0	-	benign(0.046)	deleterious(0.04)	neutral(0.351)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1B3	28234	genome.wustl.edu	37	12	21032525	21032525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019844.2	+1	validated	p.E431K	0.996	177	0%	179	24%	0	-	benign(0.047)	deleterious(0.05)	neutral(0.348)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21174514	21174514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009562.4	+1	validated	p.R113I	0.186	81	0%	50	24%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_OATP,superfamily_MFS general substrate transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21242858	21242858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009562.4	+1	validated	p.L581V	0.000	229	0%	120	31.7%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21329721	21329721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006446.4	+1	reviewed	p.S124Y	0.708	299	0%	209	33.5%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_OATP,superfamily_MFS general substrate transporter
RECQL	5965	genome.wustl.edu	37	12	21652550	21652550	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002907.3	-1	reviewed	e1-1	1.000	125	0%	94	31.9%	0	-	-	-	-	-
GYS2	2998	genome.wustl.edu	37	12	21712095	21712095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021957.3	-1	reviewed	p.I413S	1.000	80	0%	57	33.3%	0	-	possibly_damaging(0.661)	deleterious(0)	deleterious(0.678)	HMMPfam_Glycogen_syn
GYS2	2998	genome.wustl.edu	37	12	21733352	21733352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021957.3	-1	reviewed	p.T76I	1.000	214	0%	177	19.8%	0	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ABCC9	10060	genome.wustl.edu	37	12	21953992	21953992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020297.2	-1	reviewed	p.R1546C	1.000	159	0%	102	14.7%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_SSF52540
ABCC9	10060	genome.wustl.edu	37	12	21995261	21995261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005691.2	-1	reviewed	p.R1154W	1.000	172	0%	173	32.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22001138	22001138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005691.2	-1	reviewed	p.R938*	0.998	133	0%	109	11.9%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22028599	22028599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005691.2	-1	reviewed	p.R694Q	1.000	115	0%	104	25%	0	-	benign(0.293)	tolerated(0.47)	neutral(0.101)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0528	9847	genome.wustl.edu	37	12	22627702	22627702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014802.1	-1	predicted	p.D676Y	1.000	246	0%	132	21.2%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22627729	22627729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014802.1	-1	predicted	p.E667*	1.000	242	0%	134	30.6%	1	0%	-	-	-	NULL
LRMP	4033	genome.wustl.edu	37	12	25254157	25254157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006152.2	+1	reviewed	p.E263K	1.000	174	0%	155	19.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MRVI1
LYRM5	144363	genome.wustl.edu	37	12	25357236	25357236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001660.2	+1	validated	p.K88T	0.387	170	0%	163	31.9%	13	61.5%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
IFLTD1	160492	genome.wustl.edu	37	12	25705862	25705862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145728.1	-1	validated	p.S11L	0.000	62	0%	41	34.1%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26629871	26629871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002223.2	-1	validated	p.L2065I	1.000	116	0%	76	47.4%	2	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26640118	26640118	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002223.2	-1	validated	p.R1813*	1.000	135	0%	136	31.6%	0	-	-	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27829999	27829999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003622.2	+1	reviewed	p.R529C	1.000	132	0%	103	22.3%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27832540	27832540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003622.2	+1	reviewed	p.K578N	1.000	489	0%	377	34.5%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27841309	27841309	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003622.2	+1	reviewed	p.E817*	1.000	360	0%	319	26.6%	4	25%	-	-	-	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
ERGIC2	51290	genome.wustl.edu	37	12	29502984	29502984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016570.2	-1	validated	p.R197H	1.000	84	0%	63	30.2%	35	42.8%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_DUF1692
IPO8	10526	genome.wustl.edu	37	12	30816508	30816508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006390.2	-1	reviewed	p.K503N	1.000	148	0%	152	25%	2	50%	possibly_damaging(0.617)	tolerated(0.49)	neutral(0.225)	superfamily_ARM-type_fold
IPO8	10526	genome.wustl.edu	37	12	30819120	30819120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006390.2	-1	reviewed	p.K404E	1.000	140	0%	114	36%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ARM-type_fold
CAPRIN2	65981	genome.wustl.edu	37	12	30881897	30881897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002259.1	-1	validated	p.K489N	0.998	352	0%	332	14.2%	0	-	benign(0.008)	tolerated(0.28)	neutral(0.032)	NULL
OVOS2	144203	genome.wustl.edu	37	12	31280655	31280655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343151.1	-1	model	p.G1079E	0.691	63	0%	86	25.6%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
FAM60A	58516	genome.wustl.edu	37	12	31451044	31451044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135811.1	-1	validated	p.K32T	1.000	137	0%	180	31.1%	5	60%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
DENND5B	160518	genome.wustl.edu	37	12	31540648	31540648	+	Silent	SNP	G	G	A	rs188374345	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144973.3	-1	validated	p.S1238	0.050	37	0%	47	29.8%	0	-	-	-	-	HMMSmart_SM00593
DENND5B	160518	genome.wustl.edu	37	12	31605149	31605149	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144973.3	-1	validated	p.E452*	0.756	330	0%	445	26.3%	0	-	-	-	-	NULL
C12orf35	55196	genome.wustl.edu	37	12	32136260	32136260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018169.3	+1	validated	p.V791I	0.720	80	0%	83	26.5%	10	40%	possibly_damaging(0.582)	tolerated(0.1)	deleterious(0.486)	NULL
C12orf35	55196	genome.wustl.edu	37	12	32136502	32136502	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018169.3	+1	validated	p.N871	0.000	106	0%	111	14.4%	16	25%	-	-	-	NULL
FGD4	121512	genome.wustl.edu	37	12	32754345	32754345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139241.2	+1	reviewed	p.R275Q	1.000	258	0%	185	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
DNM1L	10059	genome.wustl.edu	37	12	32884798	32884798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012062.3	+1	reviewed	p.R456Q	1.000	67	0%	75	32%	24	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Dynamin_M
YARS2	51067	genome.wustl.edu	37	12	32906906	32906906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040436.1	-1	validated	p.S298F	1.000	148	0%	111	18.9%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1b,superfamily_SSF52374
SYT10	341359	genome.wustl.edu	37	12	33559931	33559931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198992.2	-1	provisional	p.K290N	1.000	225	0%	141	20.6%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYT10	341359	genome.wustl.edu	37	12	33560108	33560108	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198992.2	-1	provisional	p.I231	1.000	249	0%	153	32%	0	-	-	-	-	superfamily_C2_CaLB
SYT10	341359	genome.wustl.edu	37	12	33560167	33560167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198992.2	-1	provisional	p.E212*	1.000	265	0%	180	25.6%	0	-	-	-	-	NULL
ENSG00000245482	0	genome.wustl.edu	37	12	34176636	34176636	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501954	-1	known	NULL	0.012	19	0%	17	23.5%	0	-	-	-	-	-
ALG10	84920	genome.wustl.edu	37	12	34179674	34179674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032834.3	+1	reviewed	p.R416C	1.000	387	0%	310	29%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIE2_ALG10
CPNE8	144402	genome.wustl.edu	37	12	39268309	39268309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153634.2	-1	reviewed	p.L35I	1.000	134	0%	101	15.8%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KIF21A	55605	genome.wustl.edu	37	12	39734778	39734778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017641.3	-1	validated	p.E667D	1.000	233	0%	189	21.2%	1	0%	possibly_damaging(0.717)	tolerated(0.2)	neutral(0.308)	superfamily_WD40 repeat-like
KIF21A	55605	genome.wustl.edu	37	12	39745622	39745622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017641.3	-1	validated	p.D544Y	1.000	346	0%	321	28%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF21A	55605	genome.wustl.edu	37	12	39750644	39750644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017641.3	-1	validated	p.E487K	1.000	132	0%	99	15.2%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
KIF21A	55605	genome.wustl.edu	37	12	39761795	39761795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017641.3	-1	validated	p.R164C	0.994	390	0%	302	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRK2	120892	genome.wustl.edu	37	12	40618984	40618984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.K17N	1.000	15	0%	17	29.4%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40629501	40629501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.L141I	0.973	56	0%	82	28%	0	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40643638	40643638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.F283L	1.000	112	0%	87	19.5%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40645071	40645071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.K332N	1.000	76	0%	85	25.9%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40681158	40681158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.A836S	0.975	141	0%	96	30.2%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40693008	40693008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.L1149I	0.539	305	0%	246	23.6%	0	-	possibly_damaging(0.454)	tolerated(0.05)	deleterious(0.494)	HMMPfam_LRR_1,superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40713850	40713850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.D1630Y	1.000	159	0%	175	18.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40757321	40757321	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198578.3	+1	reviewed	p.K2382	1.000	67	0%	81	32.1%	1	0%	-	-	-	superfamily_WD40_like
LRRK2	120892	genome.wustl.edu	37	12	40758878	40758878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000446130	+1	known	p.F158L	0.000	89	0%	101	22.8%	0	-	-	-	-	NULL
CNTN1	1272	genome.wustl.edu	37	12	41374839	41374839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001843.2	+1	reviewed	p.L645I	0.994	264	0%	186	30.1%	0	-	benign(0.099)	tolerated(0.14)	neutral(0.257)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GXYLT1	283464	genome.wustl.edu	37	12	42499643	42499643	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173601.1	-1	validated	p.R281*	0.986	176	0%	115	23.5%	1	0%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
PRICKLE1	144165	genome.wustl.edu	37	12	42853972	42853972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144881.1	-1	reviewed	p.F712C	0.989	196	0%	213	32.9%	0	-	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43771264	43771264	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025003.3	-1	validated	p.V1633	0.103	82	0%	62	29%	0	-	-	-	-	superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43846171	43846171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025003.3	-1	validated	p.G662E	1.000	235	0.4%	188	31.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PUS7L	83448	genome.wustl.edu	37	12	44142400	44142400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098614.1	-1	validated	p.R308Q	1.000	173	0%	125	36.8%	0	-	benign(0.28)	tolerated(0.52)	neutral(0.095)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
NELL2	4753	genome.wustl.edu	37	12	45059323	45059323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145107.1	-1	reviewed	p.S513Y	1.000	235	0%	259	27.4%	0	-	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
NELL2	4753	genome.wustl.edu	37	12	45097554	45097554	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145107.1	-1	reviewed	p.R475*	1.000	188	0%	128	20.3%	0	-	-	-	-	HMMSmart_EGF,superfamily_ConA_like_lec_gl,superfamily_SSF57196
NELL2	4753	genome.wustl.edu	37	12	45171028	45171028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145107.1	-1	reviewed	p.R276C	1.000	172	0%	139	25.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_ConA_like_lec_gl
ARID2	196528	genome.wustl.edu	37	12	46246104	46246104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152641.2	+1	validated	p.D1400Y	1.000	213	0%	183	21.9%	3	100%	possibly_damaging(0.564)	deleterious(0.02)	deleterious(0.576)	NULL
ARID2	196528	genome.wustl.edu	37	12	46298770	46298770	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152641.2	+1	validated	p.E1806V	1.000	95	0%	64	26.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321208	46321208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004719.2	-1	validated	p.S759F	0.000	287	0%	277	33.6%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
SLC38A4	55089	genome.wustl.edu	37	12	47170734	47170734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143824.1	-1	validated	p.L376R	0.999	237	0%	235	18.3%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47178414	47178414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143824.1	-1	validated	p.S135Y	1.000	290	0%	190	34.7%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_Aa_trans
LOC100288986	100288986	genome.wustl.edu	37	12	47629473	47629473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343197.1	-1	model	p.E7K	0.876	50	0%	47	25.5%	43	25.5%	-	-	-	NULL
FAM113B	91523	genome.wustl.edu	37	12	47629694	47629694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138371.1	+1	predicted	p.R283I	0.000	61	0%	47	36.2%	18	0%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	NULL
RPAP3	79657	genome.wustl.edu	37	12	48081679	48081679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024604.2	-1	reviewed	p.A282T	1.000	248	0%	198	28.3%	2	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
RPAP3	79657	genome.wustl.edu	37	12	48090144	48090144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024604.2	-1	reviewed	p.D154Y	1.000	179	0%	249	27.7%	10	70%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
VDR	7421	genome.wustl.edu	37	12	48251023	48251023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000376.2	-1	reviewed	p.R158C	0.387	53	0%	71	21.1%	10	30%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Nuclear receptor ligand-binding domain
COL2A1	1280	genome.wustl.edu	37	12	48369808	48369808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001844.4	-1	reviewed	p.G1179*	1.000	77	0%	50	20%	0	-	-	-	-	HMMPfam_Collagen
ANP32D	23519	genome.wustl.edu	37	12	48866481	48866481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012404.2	+1	reviewed	p.R12W	1.000	296	0%	386	29.5%	0	-	benign(0.071)	deleterious(0.02)	neutral(0.388)	NULL
ANP32D	23519	genome.wustl.edu	37	12	48866744	48866744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012404.2	+1	reviewed	p.K99N	1.000	352	0%	437	22.9%	0	-	benign(0.303)	deleterious(0.04)	neutral(0.443)	superfamily_SSF52075
LALBA	3906	genome.wustl.edu	37	12	48962315	48962315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002289.2	-1	reviewed	p.K118T	0.845	172	0%	142	33.1%	0	-	benign(0.207)	deleterious(0.04)	neutral(0.369)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
CCNT1	904	genome.wustl.edu	37	12	49087554	49087554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001240.2	-1	reviewed	p.K481N	1.000	155	0%	186	32.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADCY6	112	genome.wustl.edu	37	12	49169121	49169121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015270.3	-1	reviewed	p.L649M	1.000	53	0%	82	30.5%	3	100%	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMPfam_DUF1053
CCDC65	85478	genome.wustl.edu	37	12	49298245	49298245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033124.4	+1	validated	p.F42L	1.000	233	0%	244	29.9%	0	-	probably_damaging(0.991)	tolerated(0.36)	neutral(0.464)	NULL
CCDC65	85478	genome.wustl.edu	37	12	49312057	49312057	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033124.4	+1	validated	e5-1	1.000	183	0%	157	24.2%	0	-	-	-	-	-
WNT10B	7480	genome.wustl.edu	37	12	49361735	49361735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000407467	-1	known	p.G188D	0.989	64	0%	55	25.5%	0	-	unknown(0)	tolerated(0.2)	-	HMMPfam_wnt,HMMSmart_WNT1
PRPF40B	25766	genome.wustl.edu	37	12	50030607	50030607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031698.1	+1	provisional	p.Q490P	1.000	74	0%	46	30.4%	26	42.3%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00441,superfamily_FF domain
NCKAP5L	57701	genome.wustl.edu	37	12	50186325	50186325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000433948	-1	known	p.E947*	1.000	22	0%	14	42.9%	22	27.2%	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50190135	50190135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037806.3	-1	validated	p.R503Q	0.995	5	0.000	8	0.625	7	71.4%	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	NULL
AQP2	359	genome.wustl.edu	37	12	50344655	50344655	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000486.5	+1	reviewed	p.F14	0.180	37	0%	33	24.2%	1	100%	-	-	-	HMMPfam_MIP,superfamily_MIP
SMARCD1	6602	genome.wustl.edu	37	12	50480416	50480416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003076.4	+1	reviewed	p.K126N	1.000	111	0%	78	21.8%	7	14.2%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51069199	51069199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173602.2	+1	validated	p.F295C	1.000	100	0%	80	33.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMPRSS12	283471	genome.wustl.edu	37	12	51281091	51281091	+	Missense_Mutation	SNP	G	G	T	rs147804767	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182559.2	+1	validated	p.R281I	0.000	192	0%	126	32.5%	0	-	probably_damaging(0.982)	tolerated(0.27)	neutral(0.460)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SLC11A2	4891	genome.wustl.edu	37	12	51386001	51386001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000617.2	-1	reviewed	p.D440A	1.000	165	0%	146	34.9%	17	52.9%	possibly_damaging(0.582)	tolerated(0.12)	neutral(0.461)	HMMPfam_Nramp
LETMD1	25875	genome.wustl.edu	37	12	51442916	51442916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015416.3	+1	validated	p.F74L	1.000	82	0%	86	23.3%	3	33.3%	possibly_damaging(0.93)	tolerated(0.25)	neutral(0.413)	NULL
TFCP2	7024	genome.wustl.edu	37	12	51566093	51566093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005653.4	-1	reviewed	p.Y38C	1.000	212	0%	184	30.4%	10	40%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_CP2
SLC4A8	9498	genome.wustl.edu	37	12	51856209	51856209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039960.1	+1	validated	p.R406I	1.000	197	0%	137	29.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_Phoshotransferase/anion transport protein
SCN8A	6334	genome.wustl.edu	37	12	52077998	52077998	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014191.2	+1	reviewed	p.F106C	1.000	164	0%	129	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52080229	52080229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014191.2	+1	reviewed	p.S158L	1.000	94	0%	79	30.4%	0	-	benign(0.271)	tolerated(0.08)	neutral(0.329)	superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52159701	52159701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014191.2	+1	reviewed	p.R931*	1.000	417	0%	365	32.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52184184	52184184	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014191.2	+1	reviewed	p.F1474	1.000	55	0%	43	30.2%	0	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52200889	52200889	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014191.2	+1	reviewed	p.F1873	0.998	98	0%	100	31%	0	-	-	-	-	NULL
ACVRL1	94	genome.wustl.edu	37	12	52309938	52309938	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000020.2	+1	reviewed	p.C389	1.000	28	0%	53	28.3%	15	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
GRASP	160622	genome.wustl.edu	37	12	52407560	52407560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181711.2	+1	provisional	p.L182I	0.870	84	0%	75	28%	5	0%	benign(0.006)	tolerated(0.3)	neutral(0.029)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
KRT85	3891	genome.wustl.edu	37	12	52757182	52757182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002283.3	-1	reviewed	p.L267I	0.909	108	0%	124	34.7%	0	-	possibly_damaging(0.54)	tolerated(0.08)	deleterious(0.483)	HMMPfam_Filament
KRT84	3890	genome.wustl.edu	37	12	52772018	52772018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033045.3	-1	reviewed	p.G535S	0.001	1	0.000	6	1.000	0	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
KRT75	9119	genome.wustl.edu	37	12	52827028	52827028	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004693.2	-1	reviewed	p.F169	1.000	84	0%	76	38.2%	0	-	-	-	-	HMMPfam_Filament
KRT6B	3854	genome.wustl.edu	37	12	52841589	52841589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005555.3	-1	reviewed	p.R466H	1.000	250	0%	330	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament,PatternScan_IF
KRT6C	286887	genome.wustl.edu	37	12	52865257	52865257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173086.4	-1	reviewed	p.K287T	0.145	179	0%	217	24.9%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_Filament
KRT6A	3853	genome.wustl.edu	37	12	52882330	52882330	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005554.3	-1	reviewed	p.C402	0.006	205	0%	247	32.4%	0	-	-	-	-	HMMPfam_Filament
KRT6A	3853	genome.wustl.edu	37	12	52883814	52883814	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005554.3	-1	reviewed	p.D372	0.877	190	0%	153	17.6%	0	-	-	-	-	HMMPfam_Filament
KRT73	319101	genome.wustl.edu	37	12	53011912	53011912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175068.2	-1	reviewed	p.R133W	1.000	126	0%	122	37.7%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_Filament
KRT79	338785	genome.wustl.edu	37	12	53227733	53227733	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175834.2	-1	reviewed	p.T104	0.000	50	0%	87	14.9%	0	-	-	-	-	NULL
MFSD5	84975	genome.wustl.edu	37	12	53646934	53646934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032889.4	+1	validated	p.K105N	1.000	239	0.4%	340	23.2%	38	42.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF791,superfamily_MFS general substrate transporter
MAP3K12	7786	genome.wustl.edu	37	12	53881028	53881028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000444144	-1	known	p.R50*	0.999	41	0%	54	31.5%	2	100%	-	-	-	NULL
HOXC11	3227	genome.wustl.edu	37	12	54367487	54367487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014212.3	+1	reviewed	p.F154L	1.000	32	0%	44	29.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
HOXC10	3226	genome.wustl.edu	37	12	54383067	54383067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017409.3	+1	reviewed	p.F289C	1.000	53	0%	67	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ITGA5	3678	genome.wustl.edu	37	12	54798618	54798618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002205.2	-1	reviewed	p.P429H	1.000	35	0%	35	25.7%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMSmart_Int_alpha,superfamily_SSF69318
NCKAP1L	3071	genome.wustl.edu	37	12	54932728	54932728	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005337.4	+1	reviewed	p.R1082*	1.000	107	0%	95	30.5%	42	0%	-	-	-	HMMPfam_Nckap1
NCKAP1L	3071	genome.wustl.edu	37	12	54936426	54936426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005337.4	+1	reviewed	p.R1114Q	1.000	117	0%	123	30.9%	71	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Nckap1
PDE1B	5153	genome.wustl.edu	37	12	54969784	54969784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000924.3	+1	validated	p.D426N	1.000	171	0%	242	28.9%	1	0%	possibly_damaging(0.885)	deleterious(0.04)	deleterious(0.695)	HMMPfam_PDEase_I,superfamily_SSF109604
KIAA0748	9840	genome.wustl.edu	37	12	55356986	55356986	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098815.1	-1	validated	p.D232E	1.000	84	0%	74	31.1%	3	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55420814	55420814	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021191.2	+1	validated	p.I197	0.978	343	0%	271	21%	0	-	-	-	-	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55420932	55420932	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021191.2	+1	validated	p.F237I	0.998	461	0.2%	309	25.6%	0	-	possibly_damaging(0.647)	tolerated(0.06)	deleterious(0.549)	NULL
OR10A7	121364	genome.wustl.edu	37	12	55615172	55615172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005280.1	+1	provisional	p.R122C	1.000	365	0%	410	35.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR6C74	254783	genome.wustl.edu	37	12	55641534	55641534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005490.1	+1	provisional	p.F155V	0.001	280	0%	245	23.3%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C74	254783	genome.wustl.edu	37	12	55641711	55641711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005490.1	+1	provisional	p.L214I	0.000	257	0%	199	28.1%	0	-	benign(0.032)	tolerated(0.25)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688437	55688437	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005493.1	-1	provisional	p.E194*	0.088	221	0%	200	31.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C75	390323	genome.wustl.edu	37	12	55759471	55759471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005497.1	+1	provisional	p.L193I	0.468	249	0%	243	28.4%	0	-	benign(0.175)	tolerated(0.72)	neutral(0.018)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C65	403282	genome.wustl.edu	37	12	55795043	55795043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005518.1	+1	provisional	p.I244S	0.200	165	0%	151	27.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C2	341416	genome.wustl.edu	37	12	55846078	55846078	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054105.1	+1	provisional	p.I27	0.005	270	0%	299	32.1%	0	-	-	-	-	superfamily_SSF81321
OR6C68	403284	genome.wustl.edu	37	12	55887086	55887086	+	Missense_Mutation	SNP	C	C	T	rs182070849	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005519.1	+1	provisional	p.R314C	0.000	144	0%	130	35.4%	0	-	possibly_damaging(0.732)	tolerated(0.17)	neutral(0.327)	superfamily_Family A G protein-coupled receptor-like
OR2AP1	121129	genome.wustl.edu	37	12	55969123	55969123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000321688	+1	known	p.L309I	0.431	17	0%	10	60%	0	-	benign(0.084)	tolerated(0.18)	neutral(0.062)	NULL
RDH5	5959	genome.wustl.edu	37	12	56115654	56115654	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002905.3	+1	reviewed	p.V164	1.000	21	0%	17	47.1%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
MMP19	4327	genome.wustl.edu	37	12	56231653	56231653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002429.4	-1	reviewed	p.R345Q	1.000	108	0%	180	27.8%	4	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP19	4327	genome.wustl.edu	37	12	56232478	56232478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002429.4	-1	reviewed	p.E269D	0.063	48	0%	69	34.8%	5	0%	benign(0.043)	tolerated(0.63)	neutral(0.006)	NULL
DGKA	1606	genome.wustl.edu	37	12	56330838	56330838	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001345.4	+1	reviewed	p.F34	0.340	430	0%	376	19.7%	2	0%	-	-	-	superfamily_EF-hand
DGKA	1606	genome.wustl.edu	37	12	56334722	56334722	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001345.4	+1	reviewed	p.K353	0.226	120	0%	127	32.3%	3	0%	-	-	-	NULL
SMARCC2	6601	genome.wustl.edu	37	12	56559402	56559402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003075.3	-1	reviewed	p.R947W	1.000	55	0%	100	38%	80	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CS	1431	genome.wustl.edu	37	12	56669901	56669901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004077.2	-1	reviewed	p.E223K	1.000	61	0%	77	35.1%	51	45%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
PAN2	9924	genome.wustl.edu	37	12	56717132	56717132	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127460.2	-1	reviewed	p.E774*	1.000	147	0%	166	25.3%	1	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
PAN2	9924	genome.wustl.edu	37	12	56722294	56722294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127460.2	-1	reviewed	p.K138N	1.000	160	0%	198	34.3%	0	-	benign(0.059)	deleterious(0.01)	neutral(0.410)	superfamily_WD40 repeat-like
STAT2	6773	genome.wustl.edu	37	12	56737176	56737176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005419.3	-1	reviewed	p.F851L	0.895	54	0%	87	19.5%	55	16.3%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
MIP	4284	genome.wustl.edu	37	12	56847452	56847452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012064.3	-1	reviewed	p.D150N	0.999	19	0%	23	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIP,superfamily_MIP
BAZ2A	11176	genome.wustl.edu	37	12	57005376	57005376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013449.3	-1	validated	p.R553C	1.000	77	0%	65	10.8%	8	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
NACA	4666	genome.wustl.edu	37	12	57114079	57114079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113203.1	-1	validated	p.S412Y	0.075	152	0%	128	18%	0	-	unknown(0)	deleterious(0)	-	NULL
SDR9C7	121214	genome.wustl.edu	37	12	57324155	57324155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148897.2	-1	reviewed	p.E139K	0.974	164	0%	123	37.4%	1	0%	benign(0.049)	tolerated(0.13)	neutral(0.256)	HMMPfam_adh_short,superfamily_NAD(P)-bd
MYO1A	4640	genome.wustl.edu	37	12	57430769	57430769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005379.2	-1	reviewed	p.R721Q	1.000	210	0%	211	35.5%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMSmart_IQ,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57432228	57432228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005379.2	-1	reviewed	p.K576N	1.000	63	0%	47	17%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57440382	57440382	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005379.2	-1	reviewed	p.F198	1.000	205	0%	167	18.6%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57440849	57440849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005379.2	-1	reviewed	p.R158Q	1.000	115	0%	104	36.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
LRP1	4035	genome.wustl.edu	37	12	57548049	57548049	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002332.2	+1	reviewed	p.I300	0.989	117	0%	145	30.3%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
GLI1	2735	genome.wustl.edu	37	12	57864605	57864605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005269.2	+1	reviewed	p.E694D	1.000	41	0%	49	24.5%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
GLI1	2735	genome.wustl.edu	37	12	57865380	57865380	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005269.2	+1	reviewed	p.G953*	0.959	74	0%	90	13.3%	2	0%	-	-	-	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57872519	57872519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032496.2	-1	reviewed	p.S113Y	0.923	46	0%	69	27.5%	8	0%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
DTX3	196403	genome.wustl.edu	37	12	58000810	58000810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000413885	+1	known	p.S58Y	0.999	132	0%	158	24.7%	9	0%	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58016670	58016670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133489.2	+1	validated	p.A298T	1.000	140	0%	162	22.2%	0	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_Sulfate_transp
B4GALNT1	2583	genome.wustl.edu	37	12	58020694	58020694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001478.3	-1	reviewed	p.V479I	0.975	50	0%	88	34.1%	0	-	possibly_damaging(0.535)	tolerated(0.16)	neutral(0.240)	NULL
AGAP2	116986	genome.wustl.edu	37	12	58128450	58128450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122772.1	-1	validated	p.D414N	0.836	135	0%	146	44.5%	1	0%	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
MARCH9	92979	genome.wustl.edu	37	12	58152076	58152076	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138396.4	+1	validated	p.V233	1.000	44	0%	50	10%	55	0%	-	-	-	NULL
TSFM	10102	genome.wustl.edu	37	12	58186838	58186838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005726.5	+1	reviewed	p.Q185K	1.000	60	0%	71	23.9%	21	19%	benign(0.286)	tolerated(0.45)	neutral(0.100)	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
XRCC6BP1	91419	genome.wustl.edu	37	12	58350527	58350527	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033276.2	+1	provisional	p.E199*	1.000	344	0%	412	15.5%	4	0%	-	-	-	HMMPfam_Peptidase_M76
SLC16A7	9194	genome.wustl.edu	37	12	60168877	60168877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004731.3	+1	provisional	p.F267L	1.000	238	0%	210	37.1%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FAM19A2	338811	genome.wustl.edu	37	12	62148734	62148734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178539.3	-1	reviewed	p.E60*	1.000	78	0%	73	34.2%	0	-	-	-	-	NULL
USP15	9958	genome.wustl.edu	37	12	62749230	62749230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006313.1	+1	provisional	p.T268A	1.000	123	0%	81	23.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_SSF54001
MON2	23041	genome.wustl.edu	37	12	62892728	62892728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015026.2	+1	validated	p.F155L	1.000	307	0%	244	18.9%	0	-	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	NULL
AVPR1A	552	genome.wustl.edu	37	12	63541185	63541185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000706.3	-1	reviewed	p.S404L	0.967	233	0%	190	28.9%	0	-	possibly_damaging(0.918)	tolerated(0.09)	deleterious(0.665)	HMMPfam_DUF1856
AVPR1A	552	genome.wustl.edu	37	12	63543729	63543729	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000706.3	-1	reviewed	p.I296	0.999	120	0%	108	26.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
AVPR1A	552	genome.wustl.edu	37	12	63544218	63544218	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000706.3	-1	reviewed	p.F133	1.000	22	0%	17	29.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SRGAP1	57522	genome.wustl.edu	37	12	64436579	64436579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020762.2	+1	validated	p.T167A	1.000	184	0%	126	33.3%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64521952	64521952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020762.2	+1	validated	p.K951T	1.000	99	0%	73	37%	0	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	NULL
C12orf56	115749	genome.wustl.edu	37	12	64679773	64679773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099676.2	-1	validated	p.N234S	0.095	89	0%	97	22.7%	5	60%	benign(0.001)	tolerated(0.92)	-	NULL
C12orf56	115749	genome.wustl.edu	37	12	64746803	64746803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099676.2	-1	validated	p.D96Y	0.616	119	0%	145	21.4%	0	-	possibly_damaging(0.887)	deleterious(0.03)	deleterious(0.712)	NULL
IRAK3	11213	genome.wustl.edu	37	12	66641740	66641740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007199.2	+1	reviewed	p.R527I	0.000	458	0%	318	19.8%	2	0%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
HELB	92797	genome.wustl.edu	37	12	66700134	66700134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033647.2	+1	reviewed	p.R206K	0.000	158	0%	126	27%	0	-	benign(0)	tolerated(1)	-	NULL
GRIP1	23426	genome.wustl.edu	37	12	66838440	66838440	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021150.3	-1	reviewed	p.F485	0.503	172	0%	122	18.9%	1	100%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
GRIP1	23426	genome.wustl.edu	37	12	66909495	66909495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021150.3	-1	reviewed	p.R210W	1.000	399	0%	280	31.8%	3	100%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
GRIP1	23426	genome.wustl.edu	37	12	66923624	66923624	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021150.3	-1	reviewed	p.G163	0.985	471	0%	437	27.7%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CAND1	55832	genome.wustl.edu	37	12	67699926	67699926	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018448.3	+1	validated	p.K826	1.000	268	0%	148	20.9%	12	41.6%	-	-	-	superfamily_ARM repeat
IFNG	3458	genome.wustl.edu	37	12	68551983	68551983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000619.2	-1	reviewed	p.K57N	0.000	68	0%	78	39.7%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
IL26	55801	genome.wustl.edu	37	12	68619377	68619377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018402.1	-1	reviewed	p.A54T	1.000	524	0%	513	30%	0	-	benign(0.316)	tolerated(0.29)	neutral(0.128)	superfamily_4_helix_cytokine,HMMSmart_IL10
MDM1	56890	genome.wustl.edu	37	12	68709027	68709027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017440.4	-1	reviewed	p.K400N	1.000	282	0%	219	23.3%	0	-	probably_damaging(0.96)	tolerated(0.1)	deleterious(0.690)	NULL
MDM1	56890	genome.wustl.edu	37	12	68715213	68715213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017440.4	-1	reviewed	p.E307K	1.000	130	0%	112	23.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAP1B	5908	genome.wustl.edu	37	12	69048013	69048013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010942.1	+1	validated	p.R102Q	1.000	501	0%	621	22.1%	6	33.3%	possibly_damaging(0.803)	deleterious(0.01)	deleterious(0.708)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPSF6	11052	genome.wustl.edu	37	12	69652544	69652544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007007.2	+1	validated	p.G290D	1.000	177	0%	259	22.8%	80	23.7%	unknown(0)	tolerated(0.16)	-	NULL
CNOT2	4848	genome.wustl.edu	37	12	70672044	70672044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014515.4	+1	provisional	p.R13I	1.000	176	0%	138	24.6%	2	0%	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
PTPRB	5787	genome.wustl.edu	37	12	70932787	70932787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001109754.1	-1	reviewed	p.K1929T	1.000	66	0%	54	18.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
TMEM19	55266	genome.wustl.edu	37	12	72092933	72092933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000422859	+1	known	p.K297N	0.806	67	0%	74	31.1%	0	-	unknown(0)	-	-	NULL
TRHDE	29953	genome.wustl.edu	37	12	72680548	72680548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013381.2	+1	reviewed	p.K289N	1.000	114	0%	138	29.7%	0	-	possibly_damaging(0.513)	tolerated(0.43)	neutral(0.186)	HMMPfam_Peptidase_M1,superfamily_SSF63737
TRHDE	29953	genome.wustl.edu	37	12	72969270	72969270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013381.2	+1	reviewed	p.L712I	1.000	170	0%	134	33.6%	0	-	benign(0.003)	tolerated(1)	-	NULL
KCNC2	3747	genome.wustl.edu	37	12	75436910	75436910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139137.2	-1	reviewed	p.R631Q	1.000	137	0%	122	24.6%	0	-	possibly_damaging(0.906)	tolerated(0.07)	deleterious(0.678)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444251	75444251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139137.2	-1	reviewed	p.E512K	1.000	233	0%	280	28.2%	0	-	benign(0.01)	tolerated(0.32)	neutral(0.025)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75445010	75445010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139137.2	-1	reviewed	p.N259H	1.000	198	0%	165	26.7%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_Voltage-gated potassium channels
NAP1L1	4673	genome.wustl.edu	37	12	76454036	76454036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004537.4	-1	reviewed	p.R77Q	1.000	280	0%	313	30.4%	51	33.3%	benign(0.227)	deleterious(0.02)	neutral(0.406)	HMMPfam_NAP
NAV3	89795	genome.wustl.edu	37	12	78562550	78562550	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014903.4	+1	validated	p.E1629*	1.000	387	0%	359	32%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78574654	78574654	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014903.4	+1	validated	p.E1819*	1.000	147	0.7%	95	30.5%	0	-	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80626701	80626701	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343203.1	+1	model	p.I155N	1.000	85	0%	73	24.7%	0	-	benign(0.306)	deleterious(0.01)	deleterious(0.501)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80690648	80690648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343203.1	+1	model	p.K895N	1.000	14	0.000	9	0.667	0	-	benign(0.202)	tolerated(0.07)	neutral(0.339)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80722474	80722474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343203.1	+1	model	p.K1315T	1.000	46	0%	63	27%	0	-	possibly_damaging(0.888)	tolerated(1)	neutral(0.347)	superfamily_Serine proterase inhibitors
OTOGL	283310	genome.wustl.edu	37	12	80735770	80735770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343203.1	+1	model	p.N1595S	1.000	92	0%	49	22.4%	0	-	probably_damaging(0.971)	tolerated(0.2)	neutral(0.462)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80735867	80735867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000298820	+1	known	p.G164E	0.987	62	0%	30	36.7%	0	-	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80752523	80752523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343203.1	+1	model	p.V1962A	0.938	133	0%	142	31.7%	0	-	possibly_damaging(0.94)	tolerated(0.18)	neutral(0.441)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81769649	81769649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003625.2	-1	reviewed	p.E353K	1.000	151	0%	170	20.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TSPAN19	144448	genome.wustl.edu	37	12	85421736	85421736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100917.1	-1	validated	p.L69I	0.987	81	0%	64	23.4%	0	-	benign(0.01)	tolerated(0.23)	neutral(0.042)	HMMPfam_Tetraspannin
TSPAN19	144448	genome.wustl.edu	37	12	85423685	85423685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100917.1	-1	validated	p.L14I	1.000	33	0%	22	31.8%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	HMMPfam_Tetraspannin
LRRIQ1	84125	genome.wustl.edu	37	12	85449335	85449335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.R255I	0.214	86	0%	68	29.4%	0	-	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85449404	85449404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.S278Y	0.000	130	0%	111	20.7%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450018	85450018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.K483Q	0.131	248	0%	165	21.8%	0	-	possibly_damaging(0.894)	tolerated(0.06)	deleterious(0.674)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450243	85450243	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.G558*	0.001	265	0%	195	23.6%	0	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85460671	85460671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.R897Q	1.000	125	0.8%	173	21.4%	0	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85517909	85517909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.L1207I	1.000	126	0%	113	23%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85546098	85546098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079910.1	+1	validated	p.R1457H	0.949	191	0%	240	24.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
RASSF9	9182	genome.wustl.edu	37	12	86199529	86199529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005447.3	-1	reviewed	p.E87K	1.000	235	0%	155	29%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00314
C12orf50	160419	genome.wustl.edu	37	12	88383104	88383104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152589.1	-1	predicted	p.D213N	0.997	144	0%	129	31.8%	0	-	benign(0.096)	deleterious(0)	neutral(0.452)	NULL
CEP290	80184	genome.wustl.edu	37	12	88465120	88465120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025114.3	-1	reviewed	p.E1988*	1.000	140	0%	109	22%	0	-	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88514815	88514815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025114.3	-1	reviewed	p.E440*	1.000	190	0%	119	21%	0	-	-	-	-	NULL
DUSP6	1848	genome.wustl.edu	37	12	89744467	89744467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001946.2	-1	reviewed	p.L246I	1.000	146	0%	135	26.7%	40	37.5%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
C12orf12	196477	genome.wustl.edu	37	12	91347711	91347711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152638.2	-1	predicted	p.S270F	0.002	387	0%	266	24.4%	0	-	unknown(0)	deleterious(0.02)	-	NULL
KERA	11081	genome.wustl.edu	37	12	91449634	91449634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007035.3	-1	reviewed	p.R142I	1.000	485	0%	559	15.2%	0	-	benign(0.286)	deleterious(0.01)	deleterious(0.494)	superfamily_SSF52058
KERA	11081	genome.wustl.edu	37	12	91449696	91449696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007035.3	-1	reviewed	p.K121N	0.999	473	0%	555	22.2%	0	-	benign(0.194)	tolerated(0.11)	neutral(0.290)	superfamily_SSF52058
KERA	11081	genome.wustl.edu	37	12	91449874	91449874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007035.3	-1	reviewed	p.G62D	1.000	309	0%	327	17.7%	0	-	possibly_damaging(0.804)	tolerated(0.61)	neutral(0.306)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
KERA	11081	genome.wustl.edu	37	12	91449939	91449939	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007035.3	-1	reviewed	p.F40	0.364	276	0%	358	24.6%	0	-	-	-	-	superfamily_SSF52058
LUM	4060	genome.wustl.edu	37	12	91501896	91501896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002345.3	-1	reviewed	p.E287D	1.000	342	0%	233	22.7%	28	0%	benign(0.027)	tolerated(0.06)	neutral(0.324)	superfamily_L domain-like
LUM	4060	genome.wustl.edu	37	12	91502039	91502039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002345.3	-1	reviewed	p.E240K	1.000	446	0.2%	287	26.5%	129	0%	benign(0)	tolerated(1)	-	HMMPfam_LRR_1,superfamily_L domain-like
DCN	1634	genome.wustl.edu	37	12	91558423	91558423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001920.3	-1	reviewed	p.E95K	1.000	109	0%	67	26.9%	23	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CLLU1	574028	genome.wustl.edu	37	12	92818791	92818791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001025233.1	+1	provisional	p.F112C	0.002	83	0%	76	23.7%	0	-	unknown(0)	-	-	NULL
EEA1	8411	genome.wustl.edu	37	12	93169825	93169825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003566.3	-1	validated	p.R1400C	1.000	287	0%	171	25.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF
EEA1	8411	genome.wustl.edu	37	12	93172978	93172978	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003566.3	-1	validated	p.E1189	1.000	484	0%	297	20.9%	0	-	-	-	-	NULL
EEA1	8411	genome.wustl.edu	37	12	93175873	93175873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003566.3	-1	validated	p.L1063F	1.000	250	0%	143	32.2%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
EEA1	8411	genome.wustl.edu	37	12	93213173	93213173	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003566.3	-1	validated	p.E547*	1.000	412	0%	367	21.8%	0	-	-	-	-	NULL
SOCS2	8835	genome.wustl.edu	37	12	93968650	93968650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003877.3	+1	reviewed	p.E98K	1.000	176	0%	121	30.6%	1	0%	possibly_damaging(0.52)	tolerated(0.09)	deleterious(0.471)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PLXNC1	10154	genome.wustl.edu	37	12	94699045	94699045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005761.1	+1	provisional	p.K1564T	1.000	53	0%	42	28.6%	0	-	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	NULL
CCDC41	51134	genome.wustl.edu	37	12	94761837	94761837	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042399.1	-1	validated	p.E397*	1.000	318	0%	178	21.9%	3	66.6%	-	-	-	NULL
CCDC41	51134	genome.wustl.edu	37	12	94761977	94761977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042399.1	-1	validated	p.G350E	0.998	155	0%	79	19%	1	100%	probably_damaging(0.971)	tolerated(0.63)	neutral(0.416)	NULL
FGD6	55785	genome.wustl.edu	37	12	95604098	95604098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018351.3	-1	validated	p.R321Q	0.254	272	0%	261	31%	0	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
USP44	84101	genome.wustl.edu	37	12	95922631	95922631	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042403.1	-1	validated	p.E526*	1.000	187	0%	174	23%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP44	84101	genome.wustl.edu	37	12	95927554	95927554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042403.1	-1	validated	p.K160T	1.000	224	0%	229	27.5%	0	-	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	NULL
CCDC38	120935	genome.wustl.edu	37	12	96310957	96310957	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182496.2	-1	validated	p.S85*	0.009	257	0%	218	28.4%	0	-	-	-	-	NULL
AMDHD1	144193	genome.wustl.edu	37	12	96350484	96350484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152435.2	+1	validated	p.E111*	1.000	30	0%	48	16.7%	0	-	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
AMDHD1	144193	genome.wustl.edu	37	12	96354342	96354342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152435.2	+1	validated	p.D252Y	0.999	160	0%	159	24.5%	0	-	benign(0.293)	deleterious(0.03)	neutral(0.455)	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
AMDHD1	144193	genome.wustl.edu	37	12	96360270	96360270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152435.2	+1	validated	p.I393V	0.986	224	0%	179	36.3%	4	100%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases
CDK17	5128	genome.wustl.edu	37	12	96692717	96692717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002595.3	-1	reviewed	p.E215D	1.000	292	0%	201	25.9%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
C12orf63	374467	genome.wustl.edu	37	12	97051678	97051678	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198520.2	+1	validated	p.E132*	1.000	360	0%	257	29.6%	0	-	-	-	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97137287	97137287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198520.2	+1	validated	p.L868I	0.346	538	0%	355	29%	4	0%	unknown(0)	tolerated(0.34)	-	NULL
MIR135A2	406926	genome.wustl.edu	37	12	97957647	97957647	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384854	+1	known	NULL	1.000	41	0%	38	28.9%	2	100%	-	-	-	-
LOC121456	121456	genome.wustl.edu	37	12	98850440	98850440	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_016411.2	-1	model	NULL	1.000	28	0%	26	30.8%	0	-	-	-	-	-
IKBIP	121457	genome.wustl.edu	37	12	99007780	99007780	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201612.1	-1	provisional	p.K212N	0.804	105	0%	85	21.2%	2	50%	benign(0.071)	tolerated(0.06)	neutral(0.328)	NULL
APAF1	317	genome.wustl.edu	37	12	99059507	99059507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181861.1	+1	reviewed	p.D378Y	1.000	155	0%	150	28.7%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	HMMPfam_NB-ARC,superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKS1B	56899	genome.wustl.edu	37	12	99192714	99192714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152788.3	-1	validated	p.R1089W	1.000	139	0%	101	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452444	100452444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015054.1	-1	validated	p.L871I	1.000	232	0%	182	29.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100559579	100559579	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_024261.1	-1	validated	NULL	0.020	14	0%	16	25%	1	0%	-	-	-	-
GOLGA2P5	55592	genome.wustl.edu	37	12	100562378	100562378	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_024261.1	-1	validated	NULL	0.723	34	0%	32	12.5%	0	-	-	-	-	-
ACTR6	64431	genome.wustl.edu	37	12	100613875	100613875	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022496.3	+1	validated	p.R338*	1.000	118	0%	128	32.8%	5	40%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DEPDC4	120863	genome.wustl.edu	37	12	100656060	100656060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152317.2	-1	provisional	p.L228I	0.027	161	0%	184	31.5%	0	-	possibly_damaging(0.832)	tolerated(0.09)	deleterious(0.613)	NULL
SLC17A8	246213	genome.wustl.edu	37	12	100797846	100797846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139319.2	+1	reviewed	p.V362F	1.000	89	0%	87	14.9%	0	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
NR1H4	9971	genome.wustl.edu	37	12	100957082	100957082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005123.2	+1	provisional	p.L412I	1.000	214	0%	197	27.4%	0	-	probably_damaging(0.986)	tolerated(0.12)	deleterious(0.695)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ANO4	121601	genome.wustl.edu	37	12	101368632	101368632	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178826.3	+1	validated	p.I154	1.000	123	0%	160	20.6%	0	-	-	-	-	NULL
ANO4	121601	genome.wustl.edu	37	12	101493479	101493479	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178826.3	+1	validated	p.F675	0.990	212	0%	138	26.8%	0	-	-	-	-	HMMPfam_DUF590
ANO4	121601	genome.wustl.edu	37	12	101505358	101505358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178826.3	+1	validated	p.L739I	1.000	164	0%	155	23.9%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_DUF590
ANO4	121601	genome.wustl.edu	37	12	101520688	101520688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178826.3	+1	validated	p.S868L	1.000	139	0%	80	22.5%	0	-	benign(0.179)	tolerated(0.17)	neutral(0.075)	HMMPfam_DUF590
UTP20	27340	genome.wustl.edu	37	12	101689299	101689299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014503.2	+1	validated	p.F431L	0.427	95	0%	111	27.9%	0	-	benign(0.202)	tolerated(0.73)	neutral(0.021)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101739448	101739448	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014503.2	+1	validated	p.F1574	1.000	182	0%	141	31.2%	0	-	-	-	-	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101767491	101767491	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014503.2	+1	validated	p.L2359	0.005	112	0%	94	31.9%	4	50%	-	-	-	superfamily_ARM repeat
ARL1	400	genome.wustl.edu	37	12	101796682	101796682	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001177.3	-1	reviewed	p.K62T	1.000	97	0%	70	32.9%	63	39.6%	benign(0.372)	tolerated(0.18)	neutral(0.174)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNPTAB	79158	genome.wustl.edu	37	12	102158702	102158702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024312.4	-1	reviewed	p.L665I	0.139	204	0%	167	24%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
PARPBP	55010	genome.wustl.edu	37	12	102542148	102542148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017915.2	+1	predicted	p.F17L	0.997	205	0%	167	31.1%	2	0%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
C12orf42	374470	genome.wustl.edu	37	12	103700111	103700111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099336.1	-1	validated	p.R91M	0.001	74	0%	64	28.1%	0	-	possibly_damaging(0.5)	tolerated(0.09)	neutral(0.464)	NULL
C12orf42	374470	genome.wustl.edu	37	12	103872168	103872168	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099336.1	-1	validated	p.E13*	0.003	79	0%	97	32%	0	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104049239	104049239	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017564.9	+1	reviewed	p.T538	0.967	235	0%	284	30.3%	0	-	-	-	-	HMMPfam_Fasciclin,superfamily_BIgH3_FAS1
STAB2	55576	genome.wustl.edu	37	12	104123996	104123996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017564.9	+1	reviewed	p.L1729V	0.098	448	0%	333	30.6%	0	-	probably_damaging(0.995)	tolerated(0.51)	neutral(0.467)	NULL
STAB2	55576	genome.wustl.edu	37	12	104134518	104134518	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017564.9	+1	reviewed	p.F1955	0.927	146	0%	157	31.2%	0	-	-	-	-	superfamily_Grow_fac_recept
HSP90B1	7184	genome.wustl.edu	37	12	104336433	104336433	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003299.1	+1	provisional	p.S501	0.732	125	0%	111	36%	807	48.8%	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
HSP90B1	7184	genome.wustl.edu	37	12	104341424	104341424	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003299.1	+1	provisional	p.E799A	0.998	113	0%	122	31.1%	1567	42.2%	unknown(0)	tolerated(0.67)	-	NULL
GLT8D2	83468	genome.wustl.edu	37	12	104388131	104388131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031302.3	-1	provisional	p.W250L	1.000	170	0%	107	28%	2	0%	probably_damaging(0.982)	tolerated(0.13)	deleterious(0.679)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
TXNRD1	7296	genome.wustl.edu	37	12	104645331	104645331	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000429002	+1	known	p.L40	0.000	85	0%	93	32.3%	0	-	-	-	-	NULL
EID3	493861	genome.wustl.edu	37	12	104698461	104698461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008394.1	+1	provisional	p.N250T	0.931	119	0%	102	26.5%	0	-	benign(0.202)	tolerated(0.09)	neutral(0.316)	HMMPfam_Nse4
NUAK1	9891	genome.wustl.edu	37	12	106461143	106461143	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014840.2	-1	validated	p.E475*	1.000	50	0%	48	22.9%	0	-	-	-	-	NULL
NUAK1	9891	genome.wustl.edu	37	12	106461578	106461578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014840.2	-1	validated	p.R330W	0.989	79	0%	57	38.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
LOC341378	341378	genome.wustl.edu	37	12	106565597	106565597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001715424.1	+1	model	p.S147R	0.999	103	0%	107	24.3%	0	-	-	-	-	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106729449	106729449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152772.1	+1	provisional	p.E269*	1.000	188	0%	150	31.3%	0	-	-	-	-	HMMPfam_Tcp11
POLR3B	55703	genome.wustl.edu	37	12	106821008	106821008	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018082.5	+1	validated	p.K379*	1.000	163	0%	107	23.4%	0	-	-	-	-	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
RFX4	5992	genome.wustl.edu	37	12	107048077	107048077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213594.1	+1	reviewed	p.D88A	1.000	131	0%	160	28.7%	0	-	possibly_damaging(0.915)	tolerated(0.35)	neutral(0.387)	HMMPfam_RFX_DNA_binding,superfamily_SSF46785
WSCD2	9671	genome.wustl.edu	37	12	108603905	108603905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014653.2	+1	validated	p.L169M	1.000	37	0%	42	28.6%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_WSC,HMMSmart_SM00321
WSCD2	9671	genome.wustl.edu	37	12	108620899	108620899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014653.2	+1	validated	p.G313R	1.000	88	0%	86	24.4%	0	-	possibly_damaging(0.874)	tolerated(0.13)	deleterious(0.592)	HMMPfam_WSC,HMMSmart_SM00321
ISCU	23479	genome.wustl.edu	37	12	108957906	108957906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014301.3	+1	reviewed	p.D5G	0.001	213	0%	139	33.1%	1	0%	benign(0.001)	-	-	NULL
CORO1C	23603	genome.wustl.edu	37	12	109042552	109042552	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014325.2	-1	reviewed	p.F378	1.000	72	0%	83	33.7%	30	36.6%	-	-	-	HMMPfam_DUF1900
SSH1	54434	genome.wustl.edu	37	12	109198847	109198847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360239	-1	known	p.S17L	0.999	105	0%	121	25.6%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMSmart_DSPc
DAO	1610	genome.wustl.edu	37	12	109293243	109293243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001917.4	+1	reviewed	p.N302H	0.006	169	0%	167	24.6%	0	-	benign(0.058)	tolerated(0.08)	neutral(0.303)	HMMPfam_DAO,superfamily_Nucleotide-binding domain
DAO	1610	genome.wustl.edu	37	12	109294278	109294278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001917.4	+1	reviewed	p.K337N	0.965	508	0%	528	28.8%	0	-	benign(0.287)	deleterious(0.04)	neutral(0.438)	superfamily_Nucleotide-binding domain
USP30	84749	genome.wustl.edu	37	12	109509448	109509448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032663.3	+1	validated	p.S171L	0.997	155	0%	170	29.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_UCH,superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109613832	109613832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001093.3	+1	reviewed	p.D438A	0.976	324	0.3%	197	13.7%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
ACACB	32	genome.wustl.edu	37	12	109644533	109644533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001093.3	+1	reviewed	p.E978*	0.000	171	0%	167	24.6%	0	-	-	-	-	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109696914	109696914	+	Splice_Site	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001093.3	+1	reviewed	e46+1	1.000	153	0%	96	36.5%	0	-	-	-	-	-
MYO1H	283446	genome.wustl.edu	37	12	109872858	109872858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001101421.3	+1	provisional	p.R688C	1.000	43	0%	32	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFT81	28981	genome.wustl.edu	37	12	110570439	110570439	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143779.1	+1	validated	p.K173Q	1.000	72	0%	56	28.6%	0	-	possibly_damaging(0.691)	tolerated(0.1)	deleterious(0.534)	NULL
IFT81	28981	genome.wustl.edu	37	12	110581194	110581194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143779.1	+1	validated	p.M263I	1.000	100	0%	85	24.7%	2	0%	benign(0.003)	tolerated(0.61)	neutral(0.004)	NULL
GPN3	51184	genome.wustl.edu	37	12	110893464	110893464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016301.3	-1	validated	p.S197Y	1.000	172	0%	157	24.2%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_ATP_bind_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD9B	144715	genome.wustl.edu	37	12	110957710	110957710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152442.3	+1	validated	p.Q293H	0.306	137	0%	164	30.5%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
CCDC63	160762	genome.wustl.edu	37	12	111319070	111319070	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152591.1	+1	provisional	p.E275*	0.281	61	0%	62	27.4%	0	-	-	-	-	NULL
CCDC63	160762	genome.wustl.edu	37	12	111330899	111330899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152591.1	+1	provisional	p.R365Q	0.917	77	0%	67	20.9%	0	-	probably_damaging(0.998)	tolerated(0.56)	deleterious(0.481)	NULL
SH2B3	10019	genome.wustl.edu	37	12	111885615	111885615	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005475.2	+1	reviewed	p.V464	0.970	70	0%	59	30.5%	7	14.2%	-	-	-	NULL
ATXN2	6311	genome.wustl.edu	37	12	111890605	111890605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000389154	-1	known	p.E403K	1.000	55	0%	60	26.7%	43	30.2%	benign(0.007)	tolerated(0.2)	neutral(0.049)	NULL
BRAP	8315	genome.wustl.edu	37	12	112121104	112121104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006768.3	-1	reviewed	p.E30D	1.000	206	0%	243	26.7%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
MAPKAPK5	8550	genome.wustl.edu	37	12	112306616	112306616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139078.1	+1	reviewed	p.S115I	1.000	27	0%	28	17.9%	8	50%	benign(0.382)	tolerated(0.24)	neutral(0.160)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NAA25	80018	genome.wustl.edu	37	12	112471069	112471069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024953.3	-1	reviewed	p.E922*	1.000	226	0%	202	21.8%	0	-	-	-	-	NULL
NAA25	80018	genome.wustl.edu	37	12	112478294	112478294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024953.3	-1	reviewed	p.F843L	1.000	153	0%	117	22.2%	2	50%	possibly_damaging(0.631)	deleterious(0.02)	deleterious(0.604)	NULL
NAA25	80018	genome.wustl.edu	37	12	112481549	112481549	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024953.3	-1	reviewed	p.K710	1.000	248	0%	210	24.8%	0	-	-	-	-	NULL
OAS3	4940	genome.wustl.edu	37	12	113400697	113400697	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006187.2	+1	reviewed	p.R692*	0.000	423	0%	415	23.9%	13	23%	-	-	-	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
OAS2	4939	genome.wustl.edu	37	12	113435421	113435421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016817.2	+1	reviewed	p.F242V	0.055	194	0%	261	28%	15	46.6%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
TPCN1	53373	genome.wustl.edu	37	12	113716009	113716009	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143819.1	+1	validated	p.Y472	0.906	42	0%	33	48.5%	1	100%	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116452926	116452926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015335.3	-1	validated	p.R388I	1.000	190	0%	183	22.4%	0	-	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
NOS1	4842	genome.wustl.edu	37	12	117701725	117701725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000620.2	-1	reviewed	p.R731W	1.000	154	0%	197	29.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KSR2	283455	genome.wustl.edu	37	12	117962914	117962914	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173598.4	-1	validated	p.I625	1.000	47	0%	62	19.4%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
RFC5	5985	genome.wustl.edu	37	12	118467597	118467597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007370.4	+1	reviewed	p.R298Q	1.000	366	0%	368	24.5%	28	42.8%	possibly_damaging(0.899)	deleterious(0.04)	deleterious(0.705)	superfamily_Pol_clamp_load_C,HMMPfam_Rep_fac_C
SUDS3	64426	genome.wustl.edu	37	12	118828947	118828947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022491.2	+1	validated	p.R126Q	1.000	85	0%	77	23.4%	1	100%	possibly_damaging(0.747)	deleterious(0.03)	deleterious(0.639)	HMMPfam_Sds3
CCDC60	160777	genome.wustl.edu	37	12	119978478	119978478	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178499.3	+1	validated	p.S537	0.067	70	0%	78	30.8%	0	-	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120295449	120295449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007174.1	-1	validated	p.E98K	1.000	510	0%	450	30%	0	-	benign(0.032)	tolerated(0.82)	neutral(0.002)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SIRT4	23409	genome.wustl.edu	37	12	120750520	120750520	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012240.1	+1	reviewed	p.A253	0.028	80	0%	106	28.3%	2	50%	-	-	-	HMMPfam_SIR2,superfamily_SSF52467
RNF10	9921	genome.wustl.edu	37	12	120990343	120990343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014868.4	+1	reviewed	p.F132L	1.000	173	0%	181	28.7%	10	50%	benign(0.227)	tolerated(0.41)	neutral(0.037)	NULL
P2RX7	5027	genome.wustl.edu	37	12	121614955	121614955	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002562.4	+1	reviewed	p.G326	0.990	65	0%	71	36.6%	0	-	-	-	-	HMMPfam_P2X_receptor
RNF34	80196	genome.wustl.edu	37	12	121855615	121855615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194271.1	+1	reviewed	p.S179	0.046	258	0%	268	24.6%	5	40%	-	-	-	NULL
BCL7A	605	genome.wustl.edu	37	12	122492769	122492769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020993.3	+1	reviewed	p.E166D	1.000	124	0%	138	23.2%	4	50%	benign(0.144)	tolerated(0.29)	neutral(0.042)	NULL
IL31	386653	genome.wustl.edu	37	12	122657080	122657080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014336.1	-1	validated	p.S125Y	0.000	83	0%	146	15.1%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
CLIP1	6249	genome.wustl.edu	37	12	122801328	122801328	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002956.2	-1	validated	p.E1136	1.000	27	0%	30	13.3%	0	-	-	-	-	NULL
ZCCHC8	55596	genome.wustl.edu	37	12	122964813	122964813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017612.2	-1	validated	p.K355T	0.670	34	0%	50	30%	2	0%	benign(0.177)	tolerated(0.16)	neutral(0.076)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123030763	123030763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014708.4	+1	reviewed	p.S237Y	0.861	77	0%	62	19.4%	0	-	unknown(0)	tolerated(0.08)	-	NULL
DENR	8562	genome.wustl.edu	37	12	123253441	123253441	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003677.3	+1	reviewed	p.I175	0.992	124	0%	94	29.8%	10	20%	-	-	-	HMMPfam_SUI1,superfamily_TIF_SUI1
CCDC62	84660	genome.wustl.edu	37	12	123282665	123282665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201435.3	+1	validated	p.L299I	0.998	71	0%	55	21.8%	0	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
DDX55	57696	genome.wustl.edu	37	12	124104235	124104235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020936.1	+1	reviewed	p.K530N	1.000	167	0%	136	19.9%	0	-	benign(0.215)	tolerated(0.1)	neutral(0.307)	NULL
GTF2H3	2967	genome.wustl.edu	37	12	124144725	124144725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001516.3	+1	provisional	p.K290N	1.000	243	0%	265	32.8%	5	60%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124268667	124268667	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.F330	0.000	109	0%	110	29.1%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124297867	124297867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.L983M	0.997	314	0%	357	35.9%	0	-	possibly_damaging(0.885)	tolerated(0.13)	deleterious(0.599)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124350538	124350538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.R2244Q	1.000	197	0%	168	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124352467	124352467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.K2322N	1.000	86	0%	106	11.3%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124359988	124359988	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.E2599*	0.988	97	0%	129	24.8%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124382450	124382450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207437.3	+1	validated	p.K3020N	1.000	127	0%	156	35.9%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
UBC	7316	genome.wustl.edu	37	12	125396967	125396967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021009.4	-1	validated	p.L451F	0.997	388	0%	369	17.9%	7019	14%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
DHX37	57647	genome.wustl.edu	37	12	125470672	125470672	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032656.2	-1	reviewed	p.K82	0.816	145	0%	156	24.4%	0	-	-	-	-	NULL
TMEM132B	114795	genome.wustl.edu	37	12	125834408	125834408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052907.2	+1	provisional	p.D155Y	0.000	170	0%	151	26.5%	0	-	benign(0.14)	deleterious(0.04)	neutral(0.361)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126137128	126137128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052907.2	+1	provisional	p.A681T	1.000	117	0%	124	22.6%	0	-	probably_damaging(0.967)	tolerated(0.23)	neutral(0.450)	NULL
GLT1D1	144423	genome.wustl.edu	37	12	129360609	129360609	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144669.1	+1	provisional	e2+2	0.993	138	0%	174	24.7%	0	-	-	-	-	-
TMEM132D	121256	genome.wustl.edu	37	12	129559527	129559527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133448.2	-1	validated	p.F731L	0.998	175	0%	165	32.1%	0	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130831536	130831536	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004764.3	+1	reviewed	p.T194	0.037	131	0%	103	26.2%	0	-	-	-	-	superfamily_PAZ domain
PIWIL1	9271	genome.wustl.edu	37	12	130833930	130833930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004764.3	+1	reviewed	p.K294T	0.015	66	0%	55	32.7%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_PAZ,superfamily_PAZ domain
STX2	2054	genome.wustl.edu	37	12	131283133	131283133	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194356.1	-1	reviewed	p.D241	0.998	188	0%	175	33.1%	0	-	-	-	-	HMMPfam_SNARE,HMMSmart_SM00397,superfamily_t-snare proteins
SFSWAP	6433	genome.wustl.edu	37	12	132239012	132239012	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004592.2	+1	reviewed	p.F474	0.998	41	0%	39	20.5%	40	30%	-	-	-	HMMPfam_Surp,HMMSmart_SM00648,superfamily_Surp module (SWAP domain Pfam 01805)
EP400	57634	genome.wustl.edu	37	12	132534955	132534955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015409.3	+1	validated	p.D2429Y	1.000	111	0%	119	35.3%	4	75%	unknown(0)	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133212500	133212500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006231.2	-1	validated	p.S1930*	0.276	61	1.6%	73	26%	8	37.5%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133212568	133212568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006231.2	-1	validated	p.F1907L	1.000	76	0%	80	23.7%	4	75%	benign(0.02)	tolerated(0.69)	neutral(0.003)	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006231.2	-1	validated	p.P286R	1.000	29	0%	45	20%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
GOLGA3	2802	genome.wustl.edu	37	12	133378462	133378462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005895.3	-1	reviewed	p.S564L	0.995	28	0%	39	23.1%	13	38.4%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	superfamily_Spectrin repeat
ENSG00000214029	0	genome.wustl.edu	37	12	133697403	133697403	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000397313	-1	known	p.R368	0.995	38	0%	35	22.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF268	10795	genome.wustl.edu	37	12	133780021	133780021	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003415.2	+1	validated	p.P583	0.548	21	0%	17	35.3%	2	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780083	133780083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003415.2	+1	validated	p.R604K	0.997	22	0%	16	37.5%	0	-	probably_damaging(0.97)	tolerated(0.32)	neutral(0.436)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780991	133780991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003415.2	+1	validated	p.L907I	0.903	27	0%	38	26.3%	3	66.6%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDC42BPB	9578	genome.wustl.edu	37	13	19761302	19761302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000240700	+1	known	p.E26*	1.000	37	0%	35	14.3%	0	-	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	19999158	19999158	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199254.2	-1	validated	e19-1	0.996	57	0%	48	33.3%	0	-	-	-	-	-
PSPC1	55269	genome.wustl.edu	37	13	20315772	20315772	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042414.1	-1	validated	p.E329*	1.000	101	0%	92	41.3%	11	9%	-	-	-	NULL
CRYL1	51084	genome.wustl.edu	37	13	21086683	21086683	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015974.2	-1	reviewed	p.V16	1.000	39	0%	63	17.5%	5	0%	-	-	-	HMMPfam_3HCDH_N,superfamily_NAD(P)-binding Rossmann-fold domains
IFT88	8100	genome.wustl.edu	37	13	21170326	21170326	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175605.3	+1	reviewed	p.N155H	1.000	52	0%	49	30.6%	0	-	benign(0.022)	tolerated(0.6)	neutral(0.005)	NULL
N6AMT2	221143	genome.wustl.edu	37	13	21306099	21306099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174928.1	-1	provisional	p.I130S	0.009	92	0%	106	16%	7	28.5%	benign(0.03)	tolerated(0.08)	neutral(0.301)	HMMPfam_DPPF
N6AMT2	221143	genome.wustl.edu	37	13	21331605	21331605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174928.1	-1	provisional	p.E45*	1.000	226	0%	307	25.7%	2	0%	-	-	-	NULL
XPO4	64328	genome.wustl.edu	37	13	21374438	21374438	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022459.4	-1	validated	p.F668	1.000	267	0.4%	216	31.9%	1	0%	-	-	-	superfamily_ARM-type_fold
SKA3	221150	genome.wustl.edu	37	13	21746492	21746492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314759	-1	known	p.V106A	0.015	158	0%	155	21.9%	1	100%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
EFHA1	221154	genome.wustl.edu	37	13	22067399	22067399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152726.2	-1	validated	p.G432C	0.858	261	0%	155	24.5%	5	0%	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	NULL
EFHA1	221154	genome.wustl.edu	37	13	22084146	22084146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152726.2	-1	validated	p.R253Q	1.000	139	0%	95	31.6%	1	0%	probably_damaging(0.995)	tolerated(0.41)	deleterious(0.473)	superfamily_SSF47473
SACS	26278	genome.wustl.edu	37	13	23905534	23905534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.P4161T	1.000	218	0%	163	29.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SACS	26278	genome.wustl.edu	37	13	23905732	23905732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.D4095Y	1.000	126	0%	94	26.6%	1	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
SACS	26278	genome.wustl.edu	37	13	23906479	23906479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.D3846Y	1.000	177	0.6%	139	33.8%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SACS	26278	genome.wustl.edu	37	13	23907160	23907160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E3619*	1.000	118	0%	110	39.1%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23908825	23908825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E3064K	1.000	110	0%	79	31.6%	0	-	benign(0.011)	tolerated(0.46)	neutral(0.013)	NULL
SACS	26278	genome.wustl.edu	37	13	23911784	23911784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.M2077I	1.000	82	0%	74	24.3%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
SACS	26278	genome.wustl.edu	37	13	23913043	23913043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E1658K	1.000	120	0%	184	21.7%	0	-	possibly_damaging(0.506)	tolerated(0.23)	neutral(0.211)	NULL
SACS	26278	genome.wustl.edu	37	13	23913425	23913425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.F1530L	1.000	92	0%	112	11.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SACS	26278	genome.wustl.edu	37	13	23913541	23913541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E1492*	1.000	106	0%	137	39.4%	0	-	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SACS	26278	genome.wustl.edu	37	13	23913964	23913964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E1351*	1.000	89	0%	70	18.6%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23914717	23914717	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E1100*	1.000	294	0%	255	24.7%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23915703	23915703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.R771I	0.963	137	0%	116	34.5%	0	-	benign(0.014)	tolerated(0.39)	neutral(0.017)	NULL
SACS	26278	genome.wustl.edu	37	13	23929628	23929628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.V375L	0.001	154	0%	137	26.3%	0	-	benign(0)	tolerated(0.9)	-	NULL
SACS	26278	genome.wustl.edu	37	13	23932558	23932558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014363.4	-1	reviewed	p.E174*	1.000	201	0%	185	26.5%	0	-	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
TNFRSF19	55504	genome.wustl.edu	37	13	24190167	24190167	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018647.2	+1	reviewed	p.C114	0.998	104	0%	69	37.7%	7	14.2%	-	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
MIPEP	4285	genome.wustl.edu	37	13	24460499	24460499	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005932.2	-1	reviewed	p.S112	0.407	147	0%	131	28.2%	8	12.5%	-	-	-	superfamily_SSF55486
C1QTNF9	338872	genome.wustl.edu	37	13	24890237	24890237	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178540.3	+1	validated	p.G32	0.977	99	0%	132	23.5%	0	-	-	-	-	HMMPfam_Collagen
C1QTNF9	338872	genome.wustl.edu	37	13	24890263	24890263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178540.3	+1	validated	p.G41V	1.000	98	0%	141	17%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Collagen
RNF17	56163	genome.wustl.edu	37	13	25436907	25436907	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031277.2	+1	reviewed	p.K1317	1.000	209	0%	134	18.7%	0	-	-	-	-	NULL
LOC100133284	100133284	genome.wustl.edu	37	13	25591774	25591774	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001715439.1	+1	model	p.Q60	1.000	33	0%	30	16.7%	0	-	-	-	-	HMMPfam_Striatin
MTMR6	9107	genome.wustl.edu	37	13	25841968	25841968	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004685.3	-1	validated	p.E85*	1.000	236	0%	197	19.8%	0	-	-	-	-	superfamily_PH domain-like
NUPL1	9818	genome.wustl.edu	37	13	25893470	25893470	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014089.3	+1	reviewed	p.K231T	1.000	255	0%	229	30.6%	0	-	benign(0.044)	tolerated(0.81)	neutral(0.003)	NULL
NUPL1	9818	genome.wustl.edu	37	13	25895091	25895091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014089.3	+1	reviewed	p.E271*	1.000	151	0%	129	32.6%	0	-	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26108321	26108321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000381648	+1	known	p.E130D	0.088	57	0%	48	20.8%	0	-	possibly_damaging(0.647)	tolerated(0.49)	neutral(0.238)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26108340	26108340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000381648	+1	known	p.E137*	0.000	63	0%	47	29.8%	0	-	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26129175	26129175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016529.4	+1	validated	p.R411M	1.000	263	0%	295	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26154071	26154071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016529.4	+1	validated	p.E665K	1.000	235	0%	198	26.3%	0	-	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A2	51761	genome.wustl.edu	37	13	26273425	26273425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016529.4	+1	validated	p.E776K	1.000	121	0%	100	29%	0	-	benign(0.055)	tolerated(0.08)	neutral(0.303)	superfamily_HAD-like
USP12	219333	genome.wustl.edu	37	13	27669927	27669927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182488.2	-1	provisional	p.F128L	1.000	220	0%	189	27.5%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_UCH,superfamily_SSF54001
RASL11A	387496	genome.wustl.edu	37	13	27847449	27847449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206827.1	+1	provisional	p.E183K	0.877	86	0%	84	27.4%	7	71.4%	benign(0.268)	tolerated(0.85)	neutral(0.029)	superfamily_SSF52540
LNX2	222484	genome.wustl.edu	37	13	28155548	28155548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153371.3	-1	validated	p.K98T	1.000	160	0%	93	19.4%	1	0%	possibly_damaging(0.772)	tolerated(0.16)	neutral(0.346)	NULL
FLT3	2322	genome.wustl.edu	37	13	28622519	28622519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004119.2	-1	reviewed	p.E366D	0.916	393	0%	256	26.6%	0	-	benign(0.004)	tolerated(1)	-	NULL
FLT3	2322	genome.wustl.edu	37	13	28631550	28631550	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004119.2	-1	reviewed	p.E140*	1.000	118	0%	79	29.1%	0	-	-	-	-	NULL
FLT1	2321	genome.wustl.edu	37	13	28886185	28886185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002019.4	-1	reviewed	p.R1146I	0.056	110	0%	69	20.3%	2	0%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT1	2321	genome.wustl.edu	37	13	29041080	29041080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002019.4	-1	reviewed	p.K116N	0.912	182	0%	138	13.8%	1	0%	possibly_damaging(0.826)	tolerated(0.28)	neutral(0.345)	HMMSmart_SM00409
SLC46A3	283537	genome.wustl.edu	37	13	29287374	29287374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135919.1	-1	validated	p.R168Q	1.000	97	0%	58	19%	2	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC46A3	283537	genome.wustl.edu	37	13	29287458	29287458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135919.1	-1	validated	p.F140C	0.427	78	0%	53	35.8%	0	-	benign(0.313)	deleterious(0.01)	deleterious(0.503)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MTUS2	23281	genome.wustl.edu	37	13	29600920	29600920	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033602.2	+1	validated	p.L705	0.998	154	0%	116	23.3%	0	-	-	-	-	NULL
KATNAL1	84056	genome.wustl.edu	37	13	30804708	30804708	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001014380.1	-1	validated	p.T303	0.694	147	0%	117	34.2%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
USPL1	10208	genome.wustl.edu	37	13	31232960	31232960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005800.4	+1	validated	p.R916*	0.002	158	0%	144	32.6%	3	0%	-	-	-	NULL
C13orf33	84935	genome.wustl.edu	37	13	31495938	31495938	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032849.3	+1	validated	p.R248*	0.726	195	0%	199	34.2%	0	-	-	-	-	NULL
HSPH1	10808	genome.wustl.edu	37	13	31714333	31714333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006644.2	-1	validated	p.F656L	0.961	203	0%	188	34%	30	53.3%	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
RXFP2	122042	genome.wustl.edu	37	13	32351543	32351543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130806.3	+1	reviewed	p.I224M	1.000	98	0%	72	16.7%	0	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
FRY	10129	genome.wustl.edu	37	13	32705925	32705925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023037.2	+1	validated	p.R278Q	1.000	133	0%	114	23.7%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FRY	10129	genome.wustl.edu	37	13	32745211	32745211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023037.2	+1	validated	p.L652R	0.988	207	0%	152	30.3%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
FRY	10129	genome.wustl.edu	37	13	32758752	32758752	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023037.2	+1	validated	p.E1024*	1.000	150	0%	96	24%	0	-	-	-	-	NULL
FRY	10129	genome.wustl.edu	37	13	32760406	32760406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023037.2	+1	validated	p.R1110Q	1.000	415	0%	329	26.1%	0	-	possibly_damaging(0.939)	tolerated(0.34)	neutral(0.408)	NULL
FRY	10129	genome.wustl.edu	37	13	32868675	32868675	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023037.2	+1	validated	p.L2917	0.122	146	0%	122	23.8%	1	0%	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32907143	32907143	+	Nonsense_Mutation	SNP	G	G	T	rs80358438		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000059.3	+1	reviewed	p.E510*	0.014	224	0%	235	30.2%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32910767	32910767	+	Missense_Mutation	SNP	C	C	A	rs80358497		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000059.3	+1	reviewed	p.L759I	0.000	106	0%	89	18%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911181	32911181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000059.3	+1	reviewed	p.E897*	0.005	108	0%	67	25.4%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32929416	32929416	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000059.3	+1	reviewed	p.E2476*	0.002	125	0%	118	20.3%	0	-	-	-	-	NULL
N4BP2L1	90634	genome.wustl.edu	37	13	32981475	32981475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052818.2	-1	validated	p.A103G	1.000	133	0%	87	24.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
N4BP2L2	10443	genome.wustl.edu	37	13	33092051	33092051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033111.3	-1	validated	p.S118*	1.000	144	0%	137	19%	37	29.7%	-	-	-	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33110498	33110498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014887.2	-1	validated	p.D223Y	0.007	212	0%	202	18.3%	3	66.6%	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33347452	33347452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015032.3	+1	reviewed	p.S1433Y	1.000	302	0%	247	26.7%	5	0%	unknown(0)	tolerated(0.06)	-	NULL
KL	9365	genome.wustl.edu	37	13	33635089	33635089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004795.3	+1	reviewed	p.E625K	1.000	90	0%	58	39.7%	0	-	probably_damaging(0.953)	tolerated(0.36)	neutral(0.417)	superfamily_(Trans)glycosidases
KL	9365	genome.wustl.edu	37	13	33638220	33638220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004795.3	+1	reviewed	p.R979Q	0.892	220	0%	179	27.9%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
NBEA	26960	genome.wustl.edu	37	13	35923297	35923297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015678.4	+1	validated	p.E1986K	1.000	117	0%	105	33.3%	0	-	probably_damaging(0.965)	deleterious(0.04)	deleterious(0.756)	HMMPfam_DUF1088,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36026257	36026257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015678.4	+1	validated	p.K2111N	1.000	72	0%	69	18.8%	0	-	possibly_damaging(0.579)	tolerated(0.08)	deleterious(0.499)	HMMPfam_DUF1088,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36124617	36124617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015678.4	+1	validated	p.L2197F	1.000	83	0%	71	18.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36202234	36202234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015678.4	+1	validated	p.F2489C	1.000	67	0%	82	11%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
NBEA	26960	genome.wustl.edu	37	13	36220436	36220436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015678.4	+1	validated	p.S2553Y	1.000	68	0%	62	24.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
DCLK1	9201	genome.wustl.edu	37	13	36348746	36348746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360631	-1	known	p.E717K	1.000	13	0.000	9	0.444	0	-	benign(0.076)	tolerated(0.05)	neutral(0.351)	NULL
SOHLH2	54937	genome.wustl.edu	37	13	36744902	36744902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017826.2	-1	validated	p.E341D	0.400	214	0%	164	26.2%	0	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
SOHLH2	54937	genome.wustl.edu	37	13	36765959	36765959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017826.2	-1	validated	p.G168E	0.000	188	0%	225	27.1%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SPG20	23111	genome.wustl.edu	37	13	36909222	36909222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142294.1	-1	reviewed	p.R249Q	1.000	219	0%	286	24.5%	9	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TRPC4	7223	genome.wustl.edu	37	13	38211598	38211598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003306.1	-1	validated	p.K797N	1.000	162	0%	143	27.3%	0	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	NULL
FREM2	341640	genome.wustl.edu	37	13	39264573	39264573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207361.4	+1	reviewed	p.S1031Y	1.000	213	0%	105	21.9%	0	-	benign(0.408)	tolerated(1)	neutral(0.132)	NULL
NHLRC3	387921	genome.wustl.edu	37	13	39613321	39613321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012754.2	+1	validated	p.L45I	0.873	86	0%	60	26.7%	3	33.3%	benign(0.106)	tolerated(0.16)	neutral(0.068)	superfamily_SSF101898
NHLRC3	387921	genome.wustl.edu	37	13	39616246	39616246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012754.2	+1	validated	p.F130L	0.032	87	0%	64	31.2%	1	0%	benign(0.011)	tolerated(0.24)	neutral(0.038)	superfamily_SSF101898
LHFP	10186	genome.wustl.edu	37	13	40175338	40175338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005780.2	-1	reviewed	p.T6P	1.000	107	0%	105	34.3%	20	15%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FOXO1	2308	genome.wustl.edu	37	13	41134508	41134508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002015.3	-1	reviewed	p.L374I	1.000	369	0%	276	25.4%	6	33.3%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
ELF1	1997	genome.wustl.edu	37	13	41507679	41507679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172373.3	-1	reviewed	p.N581S	0.196	364	0%	374	29.9%	8	50%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
ENSG00000244957	0	genome.wustl.edu	37	13	41704466	41704466	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000499385	+1	novel	NULL	0.000	37	0%	16	43.8%	0	-	-	-	-	-
NAA16	79612	genome.wustl.edu	37	13	41910870	41910870	+	Missense_Mutation	SNP	C	C	A	rs193222711	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024561.4	+1	validated	p.S331Y	1.000	205	0%	148	28.4%	0	-	possibly_damaging(0.9)	tolerated(0.46)	neutral(0.368)	superfamily_TPR-like
KIAA0564	23078	genome.wustl.edu	37	13	42524137	42524137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015058.1	-1	validated	p.N59T	0.976	55	0%	54	33.3%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
DGKH	160851	genome.wustl.edu	37	13	42763196	42763196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178009.2	+1	reviewed	p.E555K	1.000	162	0%	129	45%	0	-	benign(0.01)	tolerated(0.18)	neutral(0.057)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42876598	42876598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016248.2	+1	reviewed	p.R1239K	0.500	185	0%	190	30.5%	0	-	benign(0.059)	tolerated(0.56)	neutral(0.010)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42877168	42877168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016248.2	+1	reviewed	p.R1429I	0.059	191	0%	208	21.2%	0	-	possibly_damaging(0.906)	tolerated(0.11)	deleterious(0.631)	NULL
TNFSF11	8600	genome.wustl.edu	37	13	43180940	43180940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003701.3	+1	reviewed	p.F280L	1.000	234	0%	203	23.6%	1	0%	benign(0.001)	tolerated(1)	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
ZC3H13	23091	genome.wustl.edu	37	13	46542050	46542050	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015070.3	-1	validated	p.R1304*	0.991	304	0%	326	23%	12	0%	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46542897	46542897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015070.3	-1	validated	p.R1261Q	1.000	561	0%	452	31.2%	6	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46559868	46559868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015070.3	-1	validated	p.K428N	1.000	541	0%	473	22.6%	3	0%	unknown(0)	tolerated(0.23)	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46619601	46619601	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015070.3	-1	validated	p.K14	1.000	464	0%	355	29%	1	100%	-	-	-	NULL
HTR2A	3356	genome.wustl.edu	37	13	47409525	47409525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000621.3	-1	reviewed	p.S288Y	1.000	178	0%	138	31.2%	0	-	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SUCLA2	8803	genome.wustl.edu	37	13	48542766	48542766	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003850.2	-1	reviewed	p.E256*	1.000	196	0%	134	23.1%	6	0%	-	-	-	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like
MED4	29079	genome.wustl.edu	37	13	48655850	48655850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014166.2	-1	provisional	p.E147*	1.000	86	0%	83	42.2%	23	0%	-	-	-	HMMPfam_VDRIP
CYSLTR2	57105	genome.wustl.edu	37	13	49281635	49281635	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020377.2	+1	reviewed	p.L228	0.960	146	0%	149	35.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYSLTR2	57105	genome.wustl.edu	37	13	49281721	49281721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020377.2	+1	reviewed	p.F256L	1.000	125	0%	121	29.8%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SETDB2	83852	genome.wustl.edu	37	13	50050936	50050936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031915.2	+1	validated	p.F222L	1.000	168	0%	170	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
RCBTB1	55213	genome.wustl.edu	37	13	50115126	50115126	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018191.3	-1	reviewed	p.A447	0.195	67	0%	74	24.3%	4	75%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
SPRYD7	57213	genome.wustl.edu	37	13	50505247	50505247	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020456.2	-1	validated	p.N44H	1.000	72	0%	73	26%	10	50%	possibly_damaging(0.644)	tolerated(0.33)	neutral(0.249)	NULL
INTS6	26512	genome.wustl.edu	37	13	52025202	52025202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012141.2	-1	reviewed	p.N100H	1.000	95	0%	70	27.1%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_vWA-like
CCDC70	83446	genome.wustl.edu	37	13	52440185	52440185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031290.2	+1	validated	p.R224H	0.000	65	0%	61	26.2%	0	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
ATP7B	540	genome.wustl.edu	37	13	52548680	52548680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000053.2	-1	reviewed	p.R226W	0.063	266	0.8%	131	29%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ALG11	440138	genome.wustl.edu	37	13	52593151	52593151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004127.1	+1	provisional	p.K49N	1.000	158	0%	198	26.3%	1	0%	benign(0.132)	tolerated(0.15)	neutral(0.252)	NULL
UTP14C	9724	genome.wustl.edu	37	13	52603501	52603501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021645.5	+1	validated	p.I187M	1.000	176	0%	230	34.8%	2	50%	possibly_damaging(0.781)	deleterious(0.01)	deleterious(0.698)	HMMPfam_Utp14
THSD1	55901	genome.wustl.edu	37	13	52971567	52971567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018676.3	-1	reviewed	p.V274A	0.977	95	0%	133	18.8%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
LOC121981	121981	genome.wustl.edu	37	13	53394795	53394795	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017783.1	+1	model	NULL	1.000	211	0%	192	21.9%	0	-	-	-	-	-
PCDH17	27253	genome.wustl.edu	37	13	58208642	58208642	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040429.2	+1	reviewed	p.D654	1.000	25	0%	19	21.1%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LOC341689	341689	genome.wustl.edu	37	13	59103052	59103052	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017487.3	+1	model	NULL	0.120	294	0%	278	26.3%	0	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59103335	59103335	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017487.3	+1	model	NULL	0.104	222	0%	214	27.6%	0	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59104229	59104229	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017487.3	+1	model	NULL	0.063	198	0%	196	25.5%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60498958	60498958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042517.1	-1	validated	p.K707N	1.000	250	0%	163	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
TDRD3	81550	genome.wustl.edu	37	13	61102575	61102575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030794.2	+1	validated	p.D313Y	1.000	248	0%	175	29.7%	5	60%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61103155	61103155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030794.2	+1	validated	p.R506Q	1.000	125	0%	91	29.7%	4	25%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61141662	61141662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030794.2	+1	validated	p.E615K	1.000	129	0%	132	34.1%	32	18.7%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61985627	61985627	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022843.3	-1	validated	p.E869*	1.000	141	0%	73	24.7%	0	-	-	-	-	NULL
LOC647264	647264	genome.wustl.edu	37	13	64406999	64406999	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078476.1	-1	model	NULL	0.705	142	0%	150	28.7%	0	-	-	-	-	-
KLHL1	57626	genome.wustl.edu	37	13	70413259	70413259	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020866.2	-1	validated	p.K421	0.999	339	0%	220	28.6%	0	-	-	-	-	NULL
DACH1	1602	genome.wustl.edu	37	13	72133978	72133978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080759.4	-1	reviewed	p.R470L	0.998	81	0%	54	22.2%	2	0%	possibly_damaging(0.829)	tolerated(0.19)	neutral(0.364)	NULL
DACH1	1602	genome.wustl.edu	37	13	72204776	72204776	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080759.4	-1	reviewed	p.K346	1.000	499	0%	520	29.4%	0	-	-	-	-	NULL
BORA	79866	genome.wustl.edu	37	13	73309097	73309097	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024808.2	+1	validated	e3-1	1.000	84	0%	73	30.1%	0	-	-	-	-	-
DIS3	22894	genome.wustl.edu	37	13	73340168	73340168	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014953.3	-1	validated	p.R638*	1.000	73	0%	49	26.5%	1	0%	-	-	-	HMMPfam_RNB
TBC1D4	9882	genome.wustl.edu	37	13	75861065	75861065	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014832.2	-1	validated	p.E1254*	1.000	209	0%	227	30.8%	2	0%	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77661630	77661630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015057.4	-1	validated	p.N3584H	1.000	120	0%	101	15.8%	3	33.3%	possibly_damaging(0.502)	tolerated(0.12)	neutral(0.428)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77692588	77692588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360084	-1	known	p.P161H	1.000	62	0%	42	14.3%	2	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77739483	77739483	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015057.4	-1	validated	p.V2090	1.000	231	0%	291	21%	0	-	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77740513	77740513	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015057.4	-1	validated	p.K2059	1.000	144	0%	163	30.1%	0	-	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77764443	77764443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015057.4	-1	validated	p.K1328N	1.000	116	0%	68	38.2%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_PHR
MYCBP2	23077	genome.wustl.edu	37	13	77837813	77837813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015057.4	-1	validated	p.D477N	1.000	181	0%	126	18.3%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
SCEL	8796	genome.wustl.edu	37	13	78130797	78130797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144777.2	+1	validated	p.R37I	1.000	421	0%	275	36%	0	-	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	NULL
SCEL	8796	genome.wustl.edu	37	13	78165564	78165564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144777.2	+1	validated	p.E221*	0.265	61	0%	81	25.9%	0	-	-	-	-	NULL
SCEL	8796	genome.wustl.edu	37	13	78176795	78176795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144777.2	+1	validated	p.Q328H	0.969	292	0%	235	24.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SCEL	8796	genome.wustl.edu	37	13	78183236	78183236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144777.2	+1	validated	p.E421*	0.242	132	0%	121	25.6%	0	-	-	-	-	NULL
SCEL	8796	genome.wustl.edu	37	13	78191733	78191733	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144777.2	+1	validated	e24-1	0.996	218	0%	216	25.5%	0	-	-	-	-	-
EDNRB	1910	genome.wustl.edu	37	13	78474736	78474736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000115.2	-1	reviewed	p.C335*	0.983	127	0%	144	15.3%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF219	79596	genome.wustl.edu	37	13	79190358	79190358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024546.3	-1	validated	p.S513Y	0.999	256	0%	279	28%	1	100%	possibly_damaging(0.783)	deleterious(0.03)	deleterious(0.657)	NULL
RBM26	64062	genome.wustl.edu	37	13	79951537	79951537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022118.3	-1	validated	p.E102*	1.000	105	0%	82	23.2%	0	-	-	-	-	superfamily_SSF101233
PTMAP5	150928	genome.wustl.edu	37	13	82264270	82264270	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000393073	+1	known	p.V23G	0.950	65	0%	57	17.5%	443	0.2%	-	-	-	HMMPfam_Prothymosin
SLITRK1	114798	genome.wustl.edu	37	13	84455409	84455409	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052910.1	-1	reviewed	p.F78	1.000	123	0%	156	12.8%	0	-	-	-	-	superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86370073	86370073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032229.2	-1	validated	p.R191C	1.000	287	0%	301	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88327750	88327750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015567.1	+1	validated	p.S36L	1.000	236	0%	310	23.2%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329002	88329002	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015567.1	+1	validated	p.F453	0.917	74	0%	97	33%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88329984	88329984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015567.1	+1	validated	p.E781K	1.000	28	0%	36	27.8%	2	0%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
GPC5	2262	genome.wustl.edu	37	13	92345744	92345744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004466.4	+1	reviewed	p.R210I	0.002	119	0%	84	29.8%	0	-	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_Glypican
GPC5	2262	genome.wustl.edu	37	13	92380916	92380916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004466.4	+1	reviewed	p.R384I	1.000	380	0%	361	26.3%	0	-	probably_damaging(0.977)	tolerated(0.09)	deleterious(0.716)	HMMPfam_Glypican
GPC5	2262	genome.wustl.edu	37	13	92408550	92408550	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004466.4	+1	reviewed	p.E386*	1.000	372	0%	285	28.1%	0	-	-	-	-	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95118887	95118887	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001129889.1	-1	validated	p.I207	0.184	216	0%	231	32%	0	-	-	-	-	HMMPfam_Tyrosinase,superfamily_Di-copper_centre
DCT	1638	genome.wustl.edu	37	13	95131486	95131486	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001129889.1	-1	validated	p.F8	0.016	67	0%	66	37.9%	0	-	-	-	-	NULL
DZIP1	22873	genome.wustl.edu	37	13	96242066	96242066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198968.2	-1	validated	p.S655Y	0.017	263	0%	205	24.9%	0	-	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
DZIP1	22873	genome.wustl.edu	37	13	96242579	96242579	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198968.2	-1	validated	p.E599	0.045	310	0%	235	30.6%	2	0%	-	-	-	NULL
DZIP1	22873	genome.wustl.edu	37	13	96242691	96242691	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198968.2	-1	validated	p.I562R	0.011	248	0%	186	28%	1	0%	possibly_damaging(0.604)	deleterious(0.02)	deleterious(0.593)	NULL
DNAJC3	5611	genome.wustl.edu	37	13	96394968	96394968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000360638	+1	known	p.M158I	0.047	499	0%	521	24.6%	0	-	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96506702	96506702	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020121.3	-1	validated	p.R1346*	0.901	199	0%	161	30.4%	3	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
UGGT2	55757	genome.wustl.edu	37	13	96579550	96579550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020121.3	-1	validated	p.M673T	1.000	104	0%	60	10%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UGGT2	55757	genome.wustl.edu	37	13	96589189	96589189	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020121.3	-1	validated	p.E656*	0.995	287	0%	227	29.1%	0	-	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96622496	96622496	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020121.3	-1	validated	p.L402*	0.873	510	0.4%	353	26.1%	0	-	-	-	-	NULL
OXGR1	27199	genome.wustl.edu	37	13	97639987	97639987	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080818.3	-1	reviewed	p.A9	0.064	273	0%	225	29.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
FARP1	10160	genome.wustl.edu	37	13	99045956	99045956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005766.2	+1	reviewed	p.S383L	0.770	38	0%	34	20.6%	11	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
FARP1	10160	genome.wustl.edu	37	13	99098432	99098432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005766.2	+1	reviewed	p.F959L	1.000	51	0%	53	9.4%	302	15.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
STK24	8428	genome.wustl.edu	37	13	99127546	99127546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003576.3	-1	validated	p.D145N	1.000	68	0%	56	19.6%	12	33.3%	possibly_damaging(0.892)	tolerated(0.07)	deleterious(0.670)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK9	23348	genome.wustl.edu	37	13	99554115	99554115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130049.1	-1	validated	p.L475I	1.000	39	0%	33	42.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
GPR183	1880	genome.wustl.edu	37	13	99947473	99947473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004951.4	-1	reviewed	p.F309L	1.000	215	0%	169	32.5%	8	0%	possibly_damaging(0.947)	tolerated(0.16)	neutral(0.450)	superfamily_SSF81321
GPR183	1880	genome.wustl.edu	37	13	99948103	99948103	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004951.4	-1	reviewed	p.I99	0.099	182	0%	156	30.8%	18	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TM9SF2	9375	genome.wustl.edu	37	13	100193889	100193889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004800.1	+1	provisional	p.D329Y	1.000	344	0%	242	29.8%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EMP70
TM9SF2	9375	genome.wustl.edu	37	13	100196132	100196132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004800.1	+1	provisional	p.E345*	1.000	237	0%	158	29.7%	18	5.5%	-	-	-	HMMPfam_EMP70
CLYBL	171425	genome.wustl.edu	37	13	100511124	100511124	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000339105	+1	known	p.R87*	0.980	89	0%	89	24.7%	2	0%	-	-	-	HMMPfam_HpcH_HpaI,superfamily_Phosphoenolpyruvate/pyruvate domain
NALCN	259232	genome.wustl.edu	37	13	101755641	101755641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052867.2	-1	validated	p.S980L	1.000	187	0%	168	39.9%	0	-	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101768898	101768898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000376200	-1	known	p.K133N	1.000	50	0%	38	36.8%	0	-	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	101944627	101944627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052867.2	-1	validated	p.R297H	1.000	156	0%	137	28.5%	0	-	possibly_damaging(0.645)	tolerated(0.16)	neutral(0.285)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TPP2	7174	genome.wustl.edu	37	13	103292684	103292684	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003291.2	+1	reviewed	p.R660*	1.000	121	0%	104	22.1%	4	0%	-	-	-	NULL
METTL21C	196541	genome.wustl.edu	37	13	103338488	103338488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010977.1	-1	predicted	p.D230N	0.999	80	0%	61	36.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Methyltransf_16,superfamily_SSF53335
TEX30	93081	genome.wustl.edu	37	13	103421875	103421875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138779.3	-1	validated	p.P11H	1.000	118	0%	88	14.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF53474
KDELC1	79070	genome.wustl.edu	37	13	103441556	103441556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024089.2	-1	reviewed	p.N367H	0.923	143	0%	155	29%	4	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_CAP10,HMMPfam_DUF821
KDELC1	79070	genome.wustl.edu	37	13	103445731	103445731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024089.2	-1	reviewed	p.R211I	1.000	121	0%	79	34.2%	1	100%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_DUF821
BIVM	54841	genome.wustl.edu	37	13	103474151	103474151	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017693.3	+1	validated	p.E254*	1.000	148	0%	142	42.3%	1	100%	-	-	-	NULL
ERCC5	2073	genome.wustl.edu	37	13	103514931	103514931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000123.2	+1	reviewed	p.L478F	0.000	97	0%	96	12.5%	9	11.1%	benign(0.001)	tolerated(0.27)	neutral(0.034)	superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103520605	103520605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000123.2	+1	reviewed	p.F892L	1.000	214	0%	149	22.1%	2	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_5' to 3' exonuclease C-terminal subdomain
LIG4	3981	genome.wustl.edu	37	13	108862744	108862744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098268.1	-1	reviewed	p.F291L	1.000	102	0%	77	18.2%	1	100%	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_DNA_ligase_A_M,superfamily_SSF56091
MYO16	23026	genome.wustl.edu	37	13	109475550	109475550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015011.1	+1	validated	p.L319V	0.000	317	0%	256	36.7%	0	-	benign(0.059)	tolerated(0.18)	neutral(0.060)	NULL
MYO16	23026	genome.wustl.edu	37	13	109496740	109496740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015011.1	+1	validated	p.D361Y	1.000	221	0%	117	20.5%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
MYO16	23026	genome.wustl.edu	37	13	109699295	109699295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015011.1	+1	validated	p.K921T	1.000	419	0%	242	28.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109817279	109817279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015011.1	+1	validated	p.R1710Q	0.769	79	0%	68	36.8%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
COL4A1	1282	genome.wustl.edu	37	13	110802717	110802717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001845.4	-1	reviewed	p.R1668I	1.000	42	0%	26	42.3%	280	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A1	1282	genome.wustl.edu	37	13	110839483	110839483	+	Splice_Site	SNP	A	A	G	rs112314120		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001845.4	-1	reviewed	e25+2	1.000	126	0%	83	27.7%	0	-	-	-	-	-
COL4A1	1282	genome.wustl.edu	37	13	110866154	110866154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001845.4	-1	reviewed	p.G85E	1.000	126	0%	104	38.5%	9	0%	unknown(0)	deleterious(0.01)	-	NULL
COL4A2	1284	genome.wustl.edu	37	13	111134946	111134946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001846.2	+1	reviewed	p.E948K	0.982	96	0%	96	20.8%	24	0%	possibly_damaging(0.778)	tolerated(0.19)	neutral(0.340)	HMMPfam_Collagen
ARHGEF7	8874	genome.wustl.edu	37	13	111896631	111896631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113511.1	+1	reviewed	p.E335*	1.000	108	0%	98	32.7%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TUBGCP3	10426	genome.wustl.edu	37	13	113153399	113153399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006322.4	-1	provisional	p.R803Q	0.988	150	0%	141	27%	5	0%	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113174225	113174225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006322.4	-1	provisional	p.R619Q	0.394	91	0%	80	37.5%	2	50%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Spc97_Spc98
TUBGCP3	10426	genome.wustl.edu	37	13	113181698	113181698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006322.4	-1	provisional	p.Q479P	1.000	104	0%	84	19%	1	0%	possibly_damaging(0.816)	deleterious(0.03)	deleterious(0.673)	HMMPfam_Spc97_Spc98
C13orf35	400165	genome.wustl.edu	37	13	113333490	113333490	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207440.1	+1	provisional	e1-1	0.000	10	0%	19	26.3%	0	-	-	-	-	-
ATP11A	23250	genome.wustl.edu	37	13	113488969	113488969	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418678	+1	known	p.S517L	0.011	236	0%	147	37.4%	4	0%	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
PROZ	8858	genome.wustl.edu	37	13	113815278	113815278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003891.1	+1	provisional	p.R84L	0.000	51	0%	60	10%	0	-	benign(0.09)	tolerated(0.15)	neutral(0.247)	HMMPfam_Gla,HMMSmart_SM00069,superfamily_GLA-domain
PROZ	8858	genome.wustl.edu	37	13	113819410	113819410	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003891.1	+1	provisional	p.P183	0.001	37	0%	28	25%	0	-	-	-	-	HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_EGF/Laminin
CUL4A	8451	genome.wustl.edu	37	13	113898762	113898762	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008895.1	+1	validated	p.E423*	1.000	28	0%	39	12.8%	14	0%	-	-	-	HMMPfam_Cullin,superfamily_Cullin homology domain
GAS6	2621	genome.wustl.edu	37	13	114531619	114531619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000820.2	-1	reviewed	p.I403	0.772	7	0.000	12	0.333	23	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CDC16	8881	genome.wustl.edu	37	13	115008795	115008795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001078645.1	+1	reviewed	p.R202H	0.904	92	0%	93	24.7%	3	33.3%	benign(0.001)	tolerated(0.28)	neutral(0.032)	superfamily_TPR-like
CHAMP1	283489	genome.wustl.edu	37	13	115091019	115091019	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032436.2	+1	validated	p.L568	0.000	777	0%	785	29.8%	2	50%	-	-	-	NULL
OR11H12	440153	genome.wustl.edu	37	14	19378551	19378551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013354.1	+1	provisional	p.L320M	0.138	451	0%	651	19.2%	0	-	benign(0.113)	tolerated(0.2)	neutral(0.058)	superfamily_SSF81321
POTEG	404785	genome.wustl.edu	37	14	19559150	19559150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005356.2	+1	validated	p.E266K	0.144	162	0%	136	8.8%	0	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEG	404785	genome.wustl.edu	37	14	19574200	19574200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005356.2	+1	validated	p.M419I	0.023	523	0%	503	9.7%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
OR11H2	79334	genome.wustl.edu	37	14	20181450	20181450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000334072	-1	known	p.R209I	0.001	913	0%	1119	12.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR11H2	79334	genome.wustl.edu	37	14	20181799	20181799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000334072	-1	known	p.V93F	0.163	655	0%	716	7.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR11H2	79334	genome.wustl.edu	37	14	20181827	20181827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000334072	-1	known	p.F83L	0.010	505	0.2%	569	10.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4Q3	441669	genome.wustl.edu	37	14	20216237	20216237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172194.1	+1	provisional	p.F217L	0.292	286	0%	376	21.5%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_7tm_1,superfamily_SSF81321
OR4M1	441670	genome.wustl.edu	37	14	20248533	20248533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005500.1	+1	provisional	p.S18P	0.431	785	0%	730	14%	0	-	possibly_damaging(0.512)	deleterious(0)	deleterious(0.617)	superfamily_Family A G protein-coupled receptor-like
OR4M1	441670	genome.wustl.edu	37	14	20248651	20248651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005500.1	+1	provisional	p.S57Y	0.970	972	0%	942	19.3%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K2	390431	genome.wustl.edu	37	14	20344443	20344443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005501.1	+1	provisional	p.K6T	0.133	311	0%	269	15.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_Family A G protein-coupled receptor-like
OR4K5	79317	genome.wustl.edu	37	14	20389557	20389557	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005483.1	+1	provisional	p.I264	0.000	952	0%	958	17.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K13	390433	genome.wustl.edu	37	14	20502241	20502241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004714.1	-1	provisional	p.R226M	0.000	225	0%	160	33.1%	0	-	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N5	390437	genome.wustl.edu	37	14	20612639	20612639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004724.1	+1	provisional	p.L249I	1.000	763	0%	858	30.8%	0	-	benign(0.043)	tolerated(0.07)	neutral(0.322)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20665531	20665531	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005503.1	+1	provisional	p.L13	0.025	72	0%	74	18.9%	0	-	-	-	-	PatternScan_G_PROTEIN_RECEP_F1_1
OR11G2	390439	genome.wustl.edu	37	14	20666219	20666219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005503.1	+1	provisional	p.P242H	0.234	325	0%	304	26.6%	0	-	benign(0.247)	tolerated(0.54)	neutral(0.033)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H6	122748	genome.wustl.edu	37	14	20692231	20692231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004480.1	+1	provisional	p.F121L	0.997	263	0%	264	33%	0	-	benign(0.194)	deleterious(0.01)	neutral(0.424)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H4	390442	genome.wustl.edu	37	14	20711400	20711400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004479.1	+1	provisional	p.F150L	0.000	159	0%	178	27%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PARP2	10038	genome.wustl.edu	37	14	20824590	20824590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005484.3	+1	reviewed	p.N422S	1.000	381	0%	411	30.9%	12	33.3%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_PARP,superfamily_ADP-ribosylation
RNASE9	390443	genome.wustl.edu	37	14	21024823	21024823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001673.3	-1	provisional	p.L136F	0.000	136	0%	134	23.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_RNase A-like
OR6S1	341799	genome.wustl.edu	37	14	21109481	21109481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001968.1	-1	provisional	p.R124C	1.000	95	0%	91	31.9%	0	-	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
RNASE6	6039	genome.wustl.edu	37	14	21250048	21250048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005615.4	+1	validated	p.N64Y	0.987	217	0%	293	29%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RnaseA,HMMSmart_SM00092,PatternScan_RNASE_PANCREATIC,superfamily_RNase A-like
LOC643332	643332	genome.wustl.edu	37	14	21387536	21387536	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_016287.2	+1	model	NULL	0.062	31	0%	25	24%	1	0%	-	-	-	-
SUPT16H	11198	genome.wustl.edu	37	14	21825452	21825452	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007192.3	-1	reviewed	p.F855C	1.000	115	0%	150	26.7%	48	45.8%	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	HMMPfam_Rtt106
CHD8	57680	genome.wustl.edu	37	14	21871806	21871806	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020920.3	-1	reviewed	p.I829	1.000	49	0%	29	34.5%	1	100%	-	-	-	NULL
SALL2	6297	genome.wustl.edu	37	14	21992693	21992693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005407.1	-1	validated	p.I390T	1.000	67	0%	91	14.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR10G3	26533	genome.wustl.edu	37	14	22038012	22038012	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005465.1	-1	validated	p.I288	1.000	69	0%	67	28.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4E2	26686	genome.wustl.edu	37	14	22133389	22133389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001912.1	+1	validated	p.F31L	1.000	377	0%	409	23.7%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	superfamily_SSF81321
ACIN1	22985	genome.wustl.edu	37	14	23528431	23528431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014977.3	-1	validated	p.R1318C	1.000	92	0%	193	38.3%	205	37%	unknown(0)	deleterious(0)	-	NULL
ACIN1	22985	genome.wustl.edu	37	14	23549596	23549596	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014977.3	-1	validated	p.I374	0.662	154	0%	193	21.2%	4	50%	-	-	-	NULL
SLC7A8	23428	genome.wustl.edu	37	14	23600757	23600757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000334354	-1	known	p.R139C	1.000	32	0%	31	38.7%	2	0%	benign(0.249)	tolerated(0.16)	neutral(0.085)	NULL
CMTM5	116173	genome.wustl.edu	37	14	23846581	23846581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138460.2	+1	reviewed	p.E41K	0.996	44	0%	47	36.2%	0	-	possibly_damaging(0.946)	tolerated(0.05)	deleterious(0.736)	HMMPfam_MARVEL
MYH6	4624	genome.wustl.edu	37	14	23869471	23869471	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002471.3	-1	validated	p.I525	0.400	67	0%	54	24.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23885404	23885404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000257.2	-1	reviewed	p.R1588C	1.000	93	0%	126	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH7	4625	genome.wustl.edu	37	14	23886423	23886423	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000257.2	-1	reviewed	p.N1486	0.985	128	0%	193	24.4%	0	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH7	4625	genome.wustl.edu	37	14	23889159	23889159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000257.2	-1	reviewed	p.I1207	0.746	57	0%	114	24.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH7	4625	genome.wustl.edu	37	14	23896949	23896949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000257.2	-1	reviewed	p.S578Y	1.000	99	0%	146	26.7%	0	-	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23898488	23898488	+	Missense_Mutation	SNP	G	G	A	rs3218714	byCluster	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000257.2	-1	reviewed	p.R403W	0.944	169	0%	247	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
AP1G2	8906	genome.wustl.edu	37	14	24030804	24030804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003917.2	-1	reviewed	p.G592S	0.001	38	0%	47	29.8%	26	23%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
DHRS4L1	728635	genome.wustl.edu	37	14	24517368	24517368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001082488.1	+1	provisional	p.L141M	1.000	98	0%	89	30.3%	0	-	possibly_damaging(0.87)	tolerated(0.17)	neutral(0.397)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
LRRC16B	90668	genome.wustl.edu	37	14	24523678	24523678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138360.3	+1	validated	p.R107Q	0.010	71	0%	60	31.7%	0	-	unknown(0)	tolerated(0.64)	-	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24524016	24524016	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138360.3	+1	validated	p.C153	0.991	44	0%	50	36%	0	-	-	-	-	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24529255	24529255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138360.3	+1	validated	p.E649K	0.998	45	0%	27	29.6%	0	-	unknown(0)	deleterious(0.02)	-	NULL
PCK2	5106	genome.wustl.edu	37	14	24566322	24566322	+	Missense_Mutation	SNP	G	G	A	rs112490159		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004563.2	+1	reviewed	p.R84Q	0.998	92	0%	127	26%	17	11.7%	benign(0.025)	tolerated(0.43)	neutral(0.014)	HMMPfam_PEPCK,superfamily_PEP carboxykinase N-terminal domain
DCAF11	80344	genome.wustl.edu	37	14	24586589	24586589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025230.4	+1	reviewed	p.R133Q	0.989	43	0%	60	28.3%	6	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
RNF31	55072	genome.wustl.edu	37	14	24629123	24629123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017999.4	+1	validated	p.E984*	0.972	130	0%	140	18.6%	56	8.9%	-	-	-	NULL
NFATC4	4776	genome.wustl.edu	37	14	24839598	24839598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136022.1	+1	reviewed	p.R395W	0.973	27	0%	25	20%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NFATC4	4776	genome.wustl.edu	37	14	24839797	24839797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136022.1	+1	reviewed	p.F461S	1.000	35	0%	39	25.6%	2	0%	probably_damaging(0.979)	tolerated(0.14)	deleterious(0.671)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24885241	24885241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025081.2	+1	validated	p.R1429Q	1.000	99	1%	86	22.1%	1	0%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_Ribonuclease H-like
KHNYN	23351	genome.wustl.edu	37	14	24905658	24905658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015299.2	+1	validated	p.G584C	0.998	92	0%	75	14.7%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GZMB	3002	genome.wustl.edu	37	14	25101113	25101113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004131.4	-1	reviewed	p.T184S	0.000	259	0%	126	15.9%	135	0%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
STXBP6	29091	genome.wustl.edu	37	14	25288541	25288541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000445298	-1	known	p.S2L	0.000	53	0%	51	29.4%	0	-	unknown(0)	-	-	NULL
NOVA1	4857	genome.wustl.edu	37	14	26939685	26939685	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006491.2	-1	reviewed	p.I177	0.065	98	0%	63	42.9%	0	-	-	-	-	NULL
SCFD1	23256	genome.wustl.edu	37	14	31164051	31164051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016106.2	+1	validated	p.L439I	1.000	136	0%	112	25%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMPfam_Sec1,superfamily_Sec1-like
COCH	1690	genome.wustl.edu	37	14	31358979	31358979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135058.1	+1	reviewed	p.F545L	1.000	155	0%	105	27.6%	0	-	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	superfamily_vWA-like
STRN3	29966	genome.wustl.edu	37	14	31364925	31364925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083893.1	-1	validated	p.L723V	1.000	106	0%	65	16.9%	1	0%	benign(0.202)	tolerated(0.16)	neutral(0.079)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HECTD1	25831	genome.wustl.edu	37	14	31572204	31572204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015382.2	-1	validated	p.L2490I	1.000	195	0%	165	34.5%	18	11.1%	possibly_damaging(0.936)	tolerated(0.36)	neutral(0.402)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HEATR5A	25938	genome.wustl.edu	37	14	31813268	31813268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015473.2	-1	validated	p.N728S	0.991	75	0%	82	32.9%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	superfamily_ARM repeat
AKAP6	9472	genome.wustl.edu	37	14	32902936	32902936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.M79I	1.000	238	0%	260	24.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33204981	33204981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.E1089*	1.000	189	0%	157	27.4%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33291257	33291257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.F1413C	0.197	190	0%	192	31.8%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33291725	33291725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.E1569A	1.000	347	0%	341	32.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33292161	33292161	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.S1714	0.364	273	0%	267	24.3%	0	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33292374	33292374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004274.4	+1	reviewed	p.I1785M	1.000	218	0%	190	33.2%	0	-	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	NULL
NPAS3	64067	genome.wustl.edu	37	14	34029370	34029370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173159.2	+1	reviewed	p.F158C	1.000	162	0%	128	12.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785
SNX6	58533	genome.wustl.edu	37	14	35078867	35078867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152233.2	-1	reviewed	p.V58I	1.000	138	0%	110	18.2%	4	0%	possibly_damaging(0.874)	tolerated(0.12)	deleterious(0.600)	HMMPfam_PX,superfamily_PX domain
BAZ1A	11177	genome.wustl.edu	37	14	35243589	35243589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013448.2	-1	validated	p.D981Y	1.000	121	0%	136	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRP54	6729	genome.wustl.edu	37	14	35468785	35468785	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003136.3	+1	validated	p.E34*	1.000	109	0%	125	28.8%	3	0%	-	-	-	HMMPfam_SRP54_N,superfamily_Domain of the SRP/SRP receptor G-proteins
RALGAPA1	253959	genome.wustl.edu	37	14	36018318	36018318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194301.2	-1	provisional	p.A2034V	0.992	143	0%	132	29.5%	4	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36143792	36143792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194301.2	-1	provisional	p.S1077*	0.812	156	0%	128	23.4%	0	-	-	-	-	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37754622	37754622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138731.5	+1	validated	p.R198Q	0.887	291	0%	246	30.9%	2	100%	possibly_damaging(0.679)	deleterious(0.04)	deleterious(0.591)	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37777572	37777572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138731.5	+1	validated	p.N226D	1.000	317	0%	403	30.5%	0	-	possibly_damaging(0.541)	tolerated(0.39)	neutral(0.200)	NULL
TTC6	319089	genome.wustl.edu	37	14	38281591	38281591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343299.1	+1	model	p.R1276S	1.000	229	0%	186	27.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SSTR1	6751	genome.wustl.edu	37	14	38678956	38678956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001049.2	+1	reviewed	p.R121H	1.000	101	0%	113	32.7%	0	-	benign(0.012)	tolerated(0.24)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
CLEC14A	161198	genome.wustl.edu	37	14	38724414	38724414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175060.1	-1	provisional	p.E272K	0.964	127	0%	72	29.2%	13	0%	probably_damaging(0.959)	tolerated(0.57)	neutral(0.409)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196
MIA2	117153	genome.wustl.edu	37	14	39716613	39716613	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_054024.3	+1	validated	p.E279*	0.228	143	0%	143	32.2%	0	-	-	-	-	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39762580	39762580	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005930.3	+1	validated	p.E164*	1.000	161	0%	118	37.3%	2	50%	-	-	-	NULL
FSCB	84075	genome.wustl.edu	37	14	44974450	44974450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032135.3	-1	validated	p.G581C	0.000	78	0%	73	23.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
FSCB	84075	genome.wustl.edu	37	14	44975349	44975349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032135.3	-1	validated	p.A281V	0.000	162	0%	117	36.8%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
C14orf28	122525	genome.wustl.edu	37	14	45374709	45374709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017923.1	+1	validated	p.L297I	1.000	188	0%	139	33.1%	0	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
KLHL28	54813	genome.wustl.edu	37	14	45403496	45403496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017658.3	-1	validated	p.Y389D	1.000	215	0%	238	29%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FAM179B	23116	genome.wustl.edu	37	14	45521721	45521721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015091.2	+1	validated	p.D1413Y	1.000	103	0%	73	30.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
FANCM	57697	genome.wustl.edu	37	14	45636336	45636336	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.R658*	0.001	319	0%	235	34%	0	-	-	-	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45644568	45644568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.N871D	0.000	228	0%	178	19.1%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
FANCM	57697	genome.wustl.edu	37	14	45644847	45644847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.E964K	0.993	206	0%	163	25.8%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
FANCM	57697	genome.wustl.edu	37	14	45645051	45645051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.D1032Y	0.000	135	0%	107	34.6%	0	-	probably_damaging(0.96)	deleterious(0.04)	deleterious(0.752)	NULL
FANCM	57697	genome.wustl.edu	37	14	45645544	45645544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.R1196H	0.000	207	0%	146	18.5%	0	-	possibly_damaging(0.772)	deleterious(0.04)	deleterious(0.636)	NULL
FANCM	57697	genome.wustl.edu	37	14	45665613	45665613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.R1860H	1.000	338	0%	216	25.9%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ERCC4,superfamily_Restriction endonuclease-like
FANCM	57697	genome.wustl.edu	37	14	45667871	45667871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020937.2	+1	reviewed	p.R1914K	1.000	359	0%	274	15%	4	25%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	superfamily_Restriction endonuclease-like
MIS18BP1	55320	genome.wustl.edu	37	14	45673405	45673405	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018353.4	-1	validated	p.E1102	0.148	192	0%	103	31.1%	2	100%	-	-	-	NULL
MIS18BP1	55320	genome.wustl.edu	37	14	45711630	45711630	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018353.4	-1	validated	p.I250M	0.252	422	0%	364	18.1%	0	-	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47342735	47342735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113498.1	-1	validated	p.L816F	0.979	167	0%	196	28.1%	0	-	possibly_damaging(0.562)	tolerated(0.09)	deleterious(0.488)	HMMPfam_MAM,HMMSmart_MAM
MDGA2	161357	genome.wustl.edu	37	14	47389308	47389308	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113498.1	-1	validated	p.N646	1.000	113	0%	112	26.8%	0	-	-	-	-	NULL
MDGA2	161357	genome.wustl.edu	37	14	47566224	47566224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001113498.1	-1	validated	p.S274Y	0.982	324	0%	204	29.9%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NEMF	9147	genome.wustl.edu	37	14	50266244	50266244	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004713.3	-1	validated	e25-2	1.000	259	0%	245	26.1%	0	-	-	-	-	-
CDKL1	8814	genome.wustl.edu	37	14	50863904	50863904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356146	-1	known	p.D129G	0.000	30	0%	17	35.3%	0	-	-	-	-	NULL
MAP4K5	11183	genome.wustl.edu	37	14	50904624	50904624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006575.3	-1	reviewed	p.R604Q	1.000	193	0%	192	34.9%	0	-	possibly_damaging(0.876)	deleterious(0.01)	deleterious(0.747)	HMMPfam_CNH,HMMSmart_SM00036
NIN	51199	genome.wustl.edu	37	14	51224265	51224265	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020921.3	-1	reviewed	p.S1161	0.864	310	0%	291	29.2%	0	-	-	-	-	NULL
PYGL	5836	genome.wustl.edu	37	14	51379846	51379846	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002863.4	-1	reviewed	p.K507	1.000	58	0%	63	38.1%	0	-	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
C14orf166	51637	genome.wustl.edu	37	14	52460480	52460480	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016039.2	+1	validated	p.R76*	1.000	76	0%	82	37.8%	27	7.4%	-	-	-	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52493932	52493932	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007361.3	-1	validated	p.G887	0.996	28	0%	27	29.6%	16	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
ERO1L	30001	genome.wustl.edu	37	14	53128011	53128011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014584.1	-1	provisional	p.E230*	1.000	149	0%	129	22.5%	6	0%	-	-	-	HMMPfam_ERO1,superfamily_ERO1
ERO1L	30001	genome.wustl.edu	37	14	53133106	53133106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014584.1	-1	provisional	p.E206*	1.000	71	0%	61	13.1%	2	0%	-	-	-	HMMPfam_ERO1,superfamily_ERO1
FERMT2	10979	genome.wustl.edu	37	14	53385887	53385887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134999.1	-1	validated	p.F115L	1.000	600	0%	367	26.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_B41
CGRRF1	10668	genome.wustl.edu	37	14	54997759	54997759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006568.2	+1	validated	p.I187M	0.983	115	0%	74	13.5%	0	-	benign(0.267)	tolerated(0.1)	neutral(0.315)	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55168925	55168925	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015589.4	+1	validated	p.E113	0.992	120	0%	122	36.9%	0	-	-	-	-	NULL
SOCS4	122809	genome.wustl.edu	37	14	55510977	55510977	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080867.2	+1	reviewed	p.I406	0.979	96	0%	122	24.6%	0	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_SH2 domain
FBXO34	55030	genome.wustl.edu	37	14	55818777	55818777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017943.3	+1	validated	p.D557Y	1.000	271	0%	198	18.7%	10	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
KTN1	3895	genome.wustl.edu	37	14	56078857	56078857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079521.1	+1	validated	p.E31*	1.000	145	0%	124	18.5%	0	-	-	-	-	NULL
PELI2	57161	genome.wustl.edu	37	14	56757008	56757008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021255.2	+1	validated	p.N177S	1.000	261	0%	208	34.1%	0	-	benign(0.043)	tolerated(0.65)	neutral(0.005)	HMMPfam_Pellino
EXOC5	10640	genome.wustl.edu	37	14	57698246	57698246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006544.3	-1	reviewed	p.K376Q	1.000	161	0%	165	18.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec10
MUDENG	55745	genome.wustl.edu	37	14	57755707	57755707	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_026895.1	+1	validated	NULL	0.001	65	0%	46	28.3%	6	16.6%	-	-	-	-
SLC35F4	341880	genome.wustl.edu	37	14	58036680	58036680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080455.1	-1	provisional	p.L354I	1.000	67	0%	45	20%	0	-	probably_damaging(0.969)	tolerated(0.53)	neutral(0.419)	NULL
SLC35F4	341880	genome.wustl.edu	37	14	58055985	58055985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080455.1	-1	provisional	p.S215Y	1.000	160	0%	126	21.4%	0	-	benign(0.359)	tolerated(0.3)	neutral(0.143)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58599840	58599840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001872.2	-1	predicted	p.P530H	0.625	172	0%	152	18.4%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58599961	58599961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001872.2	-1	predicted	p.D490Y	0.143	192	0%	158	27.2%	0	-	possibly_damaging(0.662)	deleterious(0.02)	deleterious(0.617)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58932601	58932601	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014749.3	+1	validated	p.K627T	0.001	289	0%	222	30.6%	2	0%	benign(0.306)	tolerated(0.13)	neutral(0.348)	NULL
DAAM1	23002	genome.wustl.edu	37	14	59819301	59819301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014992.1	+1	reviewed	p.E750K	1.000	80	0%	62	30.6%	0	-	possibly_damaging(0.837)	tolerated(0.28)	neutral(0.351)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DAAM1	23002	genome.wustl.edu	37	14	59821888	59821888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014992.1	+1	reviewed	p.R798C	1.000	282	0%	290	31.7%	6	33.3%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
C14orf39	317761	genome.wustl.edu	37	14	60923639	60923639	+	Missense_Mutation	SNP	C	C	T	rs147627198		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174978.2	-1	validated	p.E452K	0.984	835	0%	586	31.2%	0	-	benign(0.224)	deleterious(0.03)	neutral(0.387)	NULL
C14orf39	317761	genome.wustl.edu	37	14	60933665	60933665	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174978.2	-1	validated	p.K289Q	0.046	128	0%	83	24.1%	0	-	possibly_damaging(0.45)	tolerated(0.63)	neutral(0.151)	NULL
SLC38A6	145389	genome.wustl.edu	37	14	61512100	61512100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153811.2	+1	validated	p.L261I	1.000	282	0%	132	30.3%	3	66.6%	possibly_damaging(0.896)	tolerated(0.13)	deleterious(0.606)	HMMPfam_Aa_trans
PRKCH	5583	genome.wustl.edu	37	14	61919967	61919967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006255.3	+1	reviewed	p.R286*	0.998	233	0%	203	32%	11	9%	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
HIF1A	3091	genome.wustl.edu	37	14	62200959	62200959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001530.3	+1	validated	p.K328N	1.000	133	0%	172	30.2%	24	54.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00086,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
HIF1A	3091	genome.wustl.edu	37	14	62207710	62207710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001530.3	+1	validated	p.E633K	0.992	186	0%	214	23.4%	58	24.1%	benign(0.03)	tolerated(0.16)	neutral(0.061)	NULL
SYT16	83851	genome.wustl.edu	37	14	62541887	62541887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031914.2	+1	validated	p.E257D	0.907	104	0%	149	28.9%	0	-	possibly_damaging(0.753)	tolerated(0.21)	neutral(0.321)	NULL
SYT16	83851	genome.wustl.edu	37	14	62542084	62542084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031914.2	+1	validated	p.D323G	1.000	326	0%	474	24.9%	0	-	benign(0.035)	tolerated(0.29)	neutral(0.031)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64408437	64408437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.D56N	1.000	410	0%	241	22%	0	-	probably_damaging(0.999)	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
SYNE2	23224	genome.wustl.edu	37	14	64434459	64434459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.E341D	1.000	151	0%	90	33.3%	0	-	probably_damaging(0.979)	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64467362	64467362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.K1188T	0.274	225	0%	165	29.1%	1	0%	possibly_damaging(0.918)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64518377	64518377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.E2582D	0.031	187	0%	126	34.1%	0	-	benign(0.047)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64518804	64518804	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.N2725H	0.096	394	0%	301	25.9%	0	-	probably_damaging(0.999)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64519707	64519707	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.E3026*	0.793	321	0%	250	33.6%	0	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64520040	64520040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.L3137I	0.978	203	0%	156	23.7%	0	-	probably_damaging(0.995)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64529480	64529480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.N3360T	0.110	59	0%	49	28.6%	0	-	probably_damaging(0.998)	-	-	superfamily_4_helix_cytokine,superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64545241	64545241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.E3694*	0.999	176	0%	122	37.7%	0	-	-	-	-	HMMSmart_SPEC
SYNE2	23224	genome.wustl.edu	37	14	64608684	64608684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182914.2	+1	reviewed	p.R5062C	1.000	98	0%	69	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC
ZBTB25	7597	genome.wustl.edu	37	14	64954122	64954122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006977.2	-1	validated	p.S276N	1.000	128	0%	183	22.4%	4	25%	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	NULL
SPTB	6710	genome.wustl.edu	37	14	65234558	65234558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024858.2	-1	reviewed	p.F2014L	1.000	68	0%	71	31%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65241861	65241861	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024858.2	-1	reviewed	p.I1608	0.999	81	0%	93	10.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65260352	65260352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024858.2	-1	reviewed	p.R677C	1.000	65	0%	61	39.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
FUT8	2530	genome.wustl.edu	37	14	66136003	66136003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178154.1	+1	reviewed	p.I214V	1.000	155	0%	152	27%	13	30.7%	benign(0.203)	deleterious(0.01)	neutral(0.425)	NULL
FUT8	2530	genome.wustl.edu	37	14	66208947	66208947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178154.1	+1	reviewed	p.R516Q	1.000	321	0%	411	24.6%	14	28.5%	benign(0.016)	tolerated(0.2)	neutral(0.050)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ARG2	384	genome.wustl.edu	37	14	68113381	68113381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001172.3	+1	reviewed	p.F181L	1.000	156	0%	136	20.6%	14	21.4%	benign(0.07)	deleterious(0.04)	neutral(0.354)	HMMPfam_Arginase,superfamily_Arginase/deacetylase
ZFYVE26	23503	genome.wustl.edu	37	14	68248193	68248193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015346.3	-1	reviewed	p.R1476W	0.784	181	0%	214	20.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68252856	68252856	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015346.3	-1	reviewed	p.L1038	0.021	133	0%	123	24.4%	0	-	-	-	-	NULL
SLC39A9	55334	genome.wustl.edu	37	14	69922507	69922507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018375.3	+1	validated	p.R206Q	1.000	281	0%	262	24.4%	5	0%	probably_damaging(0.997)	tolerated(0.47)	deleterious(0.477)	HMMPfam_Zip
ADAM20	8748	genome.wustl.edu	37	14	70989351	70989351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003814.4	-1	reviewed	p.F758L	0.000	460	0%	365	29.6%	0	-	benign(0.094)	tolerated(0.7)	neutral(0.009)	NULL
PCNX	22990	genome.wustl.edu	37	14	71434938	71434938	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014982.2	+1	validated	p.L164	1.000	103	0%	93	23.7%	0	-	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71444805	71444805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014982.2	+1	validated	p.R584Q	1.000	291	0%	257	37%	0	-	unknown(0)	tolerated(0.14)	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72176044	72176044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015556.1	+1	provisional	p.E1312K	1.000	120	0%	61	32.8%	28	42.8%	benign(0.334)	deleterious(0.02)	deleterious(0.488)	NULL
DPF3	8110	genome.wustl.edu	37	14	73190363	73190363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012074.3	-1	provisional	p.R168Q	0.996	186	0%	193	21.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
DCAF4	26094	genome.wustl.edu	37	14	73418569	73418569	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015604.3	+1	reviewed	p.F264	0.971	258	0%	265	20.8%	3	33.3%	-	-	-	superfamily_WD40 repeat-like
ZFYVE1	53349	genome.wustl.edu	37	14	73444742	73444742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021260.1	-1	reviewed	p.E510*	1.000	190	0%	216	34.7%	4	0%	-	-	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73578383	73578383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021239.2	+1	validated	p.K722T	1.000	332	0%	349	24.9%	12	41.6%	unknown(0)	tolerated(0.05)	-	NULL
PSEN1	5663	genome.wustl.edu	37	14	73683937	73683937	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000021.3	+1	reviewed	p.F411	1.000	165	0%	172	29.7%	29	37.9%	-	-	-	HMMPfam_Presenilin,HMMSmart_SM00730
HEATR4	399671	genome.wustl.edu	37	14	73967349	73967349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203309.1	-1	provisional	p.L684I	1.000	136	0%	123	17.9%	1	0%	probably_damaging(0.991)	tolerated(0.44)	neutral(0.457)	superfamily_ARM-type_fold
PNMA1	9240	genome.wustl.edu	37	14	74179578	74179578	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006029.4	-1	validated	p.Q255	1.000	81	0%	109	34.9%	5	40%	-	-	-	NULL
ZNF410	57862	genome.wustl.edu	37	14	74363198	74363198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021188.1	+1	provisional	p.D117N	1.000	255	0%	211	29.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM161B	145483	genome.wustl.edu	37	14	74413187	74413187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152445.1	-1	predicted	p.S59Y	0.974	231	0%	308	26.6%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ALDH6A1	4329	genome.wustl.edu	37	14	74527415	74527415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005589.2	-1	reviewed	p.T513N	1.000	139	0%	178	23.6%	21	28.5%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_ALDH-like
PROX2	283571	genome.wustl.edu	37	14	75330052	75330052	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080408.1	-1	provisional	p.G162	0.000	47	0%	63	27%	0	-	-	-	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75513214	75513214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040108.1	-1	reviewed	p.D1049N	1.000	198	0%	184	28.3%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MLH3	27030	genome.wustl.edu	37	14	75514123	75514123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040108.1	-1	reviewed	p.S746R	0.999	188	0%	199	37.2%	0	-	unknown(0)	deleterious(0)	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75515064	75515064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040108.1	-1	reviewed	p.R432I	0.002	168	0%	113	23.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
TTLL5	23093	genome.wustl.edu	37	14	76175560	76175560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000286650	+1	known	p.R260I	0.000	104	0%	82	26.8%	0	-	benign(0.001)	-	-	NULL
TTLL5	23093	genome.wustl.edu	37	14	76211887	76211887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015072.4	+1	reviewed	p.R484C	1.000	269	0%	251	27.9%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTLL5	23093	genome.wustl.edu	37	14	76232669	76232669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015072.4	+1	reviewed	p.K658T	0.984	239	0%	234	27.4%	1	100%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
IFT43	112752	genome.wustl.edu	37	14	76549621	76549621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052873.2	+1	validated	p.E171K	1.000	48	0%	57	31.6%	151	33.1%	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76638294	76638294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017926.2	+1	validated	p.R279I	1.000	366	0%	304	26.6%	1	0%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
KIAA1737	85457	genome.wustl.edu	37	14	77580019	77580019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033426.2	+1	validated	p.K186N	1.000	97	0%	99	31.3%	1	0%	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	NULL
ZDHHC22	283576	genome.wustl.edu	37	14	77600059	77600059	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174976.2	-1	validated	p.V253	0.679	32	0%	34	38.2%	0	-	-	-	-	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77722982	77722982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020431.2	+1	validated	p.E778D	0.998	73	0%	89	23.6%	0	-	benign(0.008)	tolerated(0.16)	neutral(0.059)	NULL
C14orf133	63894	genome.wustl.edu	37	14	77893973	77893973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022067.2	-1	provisional	p.R490*	1.000	90	0%	134	31.3%	20	25%	-	-	-	HMMPfam_Golgin_A5
ISM2	145501	genome.wustl.edu	37	14	77942073	77942073	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199296.2	-1	reviewed	p.T527	0.971	72	0%	46	32.6%	0	-	-	-	-	HMMPfam_AMOP,HMMSmart_SM00723
CEP128	145508	genome.wustl.edu	37	14	81362124	81362124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152446.3	-1	validated	p.E195K	0.935	65	0%	37	18.9%	1	100%	possibly_damaging(0.875)	tolerated(0.07)	deleterious(0.659)	NULL
CEP128	145508	genome.wustl.edu	37	14	81371200	81371200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152446.3	-1	validated	p.R146I	0.962	378	0%	335	23.3%	0	-	possibly_damaging(0.901)	tolerated(0.05)	deleterious(0.702)	NULL
TSHR	7253	genome.wustl.edu	37	14	81528515	81528515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000369.2	+1	reviewed	p.R65K	1.000	164	0%	145	24.1%	0	-	-	-	-	superfamily_L domain-like
GTF2A1	2957	genome.wustl.edu	37	14	81658902	81658902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015859.2	-1	validated	p.D298E	0.996	444	0%	454	25.1%	3	100%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_TFIIA
SEL1L	6400	genome.wustl.edu	37	14	81950663	81950663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005065.4	-1	validated	p.F651C	0.999	498	0%	397	34.3%	3	66.6%	possibly_damaging(0.658)	tolerated(0.1)	deleterious(0.519)	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
FLRT2	23768	genome.wustl.edu	37	14	86088580	86088580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013231.4	+1	reviewed	p.S241L	1.000	252	0%	191	23.6%	0	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	superfamily_SSF52058
GPR65	8477	genome.wustl.edu	37	14	88477483	88477483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003608.3	+1	validated	p.F98V	0.997	421	0%	575	30.6%	4	0%	possibly_damaging(0.903)	tolerated(0.08)	deleterious(0.658)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPATA7	55812	genome.wustl.edu	37	14	88903906	88903906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018418.4	+1	reviewed	p.E394K	1.000	350	0.3%	288	12.5%	1	0%	possibly_damaging(0.542)	deleterious(0.02)	deleterious(0.567)	NULL
ZC3H14	79882	genome.wustl.edu	37	14	89038542	89038542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024824.4	+1	validated	p.S135L	1.000	124	0%	110	22.7%	1	0%	probably_damaging(0.963)	deleterious(0.03)	deleterious(0.770)	NULL
EML5	161436	genome.wustl.edu	37	14	89171223	89171223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183387.2	-1	validated	p.R678*	0.997	193	0%	180	30.6%	0	-	-	-	-	HMMPfam_HELP
EML5	161436	genome.wustl.edu	37	14	89181321	89181321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183387.2	-1	validated	p.N469T	1.000	237	0%	209	25.4%	0	-	possibly_damaging(0.521)	tolerated(0.39)	neutral(0.192)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EML5	161436	genome.wustl.edu	37	14	89210416	89210416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183387.2	-1	validated	p.D159G	1.000	37	0%	21	33.3%	0	-	possibly_damaging(0.804)	tolerated(0.11)	deleterious(0.574)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
FOXN3	1112	genome.wustl.edu	37	14	89629008	89629008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085471.1	-1	reviewed	p.S408Y	0.986	96	0%	109	35.8%	1	0%	possibly_damaging(0.64)	deleterious(0.03)	deleterious(0.589)	NULL
TTC7B	145567	genome.wustl.edu	37	14	91196530	91196530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010854.1	-1	provisional	p.S196Y	1.000	333	0%	293	34.1%	0	-	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	superfamily_TPR-like
SMEK1	55671	genome.wustl.edu	37	14	91948214	91948214	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032560.4	-1	validated	p.L207	1.000	151	0%	157	28.7%	3	33.3%	-	-	-	HMMPfam_DUF625,superfamily_ARM-type_fold
CATSPERB	79820	genome.wustl.edu	37	14	92195816	92195816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024764.2	-1	validated	p.S3L	0.000	84	0%	69	33.3%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92480613	92480613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004239.3	-1	reviewed	p.L378I	0.000	148	0%	176	25%	1	0%	benign(0.012)	tolerated(0.29)	neutral(0.030)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92622941	92622941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017437.1	+1	validated	p.K521Q	1.000	210	0%	186	34.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC24A4	123041	genome.wustl.edu	37	14	92792305	92792305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153646.2	+1	validated	p.K58R	1.000	42	0%	42	26.2%	0	-	benign(0.02)	tolerated(0.22)	neutral(0.043)	NULL
COX8C	341947	genome.wustl.edu	37	14	93814374	93814374	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182971.2	+1	validated	p.E43*	0.995	84	0%	94	26.6%	0	-	-	-	-	HMMPfam_COX8,superfamily_Cyt_c_oxidase_8
UNC79	57578	genome.wustl.edu	37	14	94044389	94044389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020818.3	+1	validated	p.F628L	1.000	198	0%	146	28.8%	0	-	possibly_damaging(0.94)	tolerated(1)	neutral(0.385)	NULL
UNC79	57578	genome.wustl.edu	37	14	94097188	94097188	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020818.3	+1	validated	p.E1707*	1.000	190	0%	181	30.4%	0	-	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94156635	94156635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020818.3	+1	validated	p.P2282S	1.000	238	0%	184	34.8%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PRIMA1	145270	genome.wustl.edu	37	14	94187876	94187876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178013.3	-1	reviewed	p.D126Y	0.997	23	0%	32	34.4%	0	-	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
DDX24	57062	genome.wustl.edu	37	14	94521359	94521359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020414.3	-1	reviewed	p.Y721D	1.000	449	0%	443	25.5%	99	44.4%	benign(0.039)	tolerated(0.07)	neutral(0.321)	superfamily_SSF52540
SERPINA12	145264	genome.wustl.edu	37	14	94964291	94964291	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173850.2	-1	provisional	p.R148	0.000	213	0%	257	27.2%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA4	5267	genome.wustl.edu	37	14	95035828	95035828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006215.2	+1	provisional	p.R394C	0.000	65	0%	59	32.2%	19	42.1%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA3	12	genome.wustl.edu	37	14	95088736	95088736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085.4	+1	reviewed	p.D326N	0.000	81	0%	85	30.6%	222	20.7%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95574305	95574305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030621.3	-1	reviewed	p.F854L	1.000	92	0%	105	34.3%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
CLMN	79789	genome.wustl.edu	37	14	95662971	95662971	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024734.3	-1	validated	p.E858*	0.003	99	0%	96	18.8%	3	0%	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95912351	95912351	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152592.3	-1	validated	p.I509	0.815	100	0%	103	24.3%	0	-	-	-	-	superfamily_Spectrin repeat
ATG2B	55102	genome.wustl.edu	37	14	96800138	96800138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018036.5	-1	validated	p.R365Q	1.000	174	0%	139	29.5%	0	-	probably_damaging(0.985)	tolerated(0.33)	neutral(0.456)	NULL
AK7	122481	genome.wustl.edu	37	14	96949408	96949408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152327.2	+1	validated	p.R609Q	0.995	154	0%	138	35.5%	9	55.5%	benign(0.352)	deleterious(0.03)	deleterious(0.476)	superfamily_P-loop containing nucleoside triphosphate hydrolases
VRK1	7443	genome.wustl.edu	37	14	97299913	97299913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003384.2	+1	reviewed	p.K35N	0.996	337	0%	298	24.2%	10	50%	benign(0.014)	tolerated(0.25)	neutral(0.037)	superfamily_Kinase_like
CYP46A1	10858	genome.wustl.edu	37	14	100157461	100157461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006668.1	+1	reviewed	p.V55I	1.000	70	0%	86	18.6%	0	-	benign(0.017)	tolerated(0.48)	neutral(0.011)	HMMPfam_p450,superfamily_Cytochrome_P450
EML1	2009	genome.wustl.edu	37	14	100404179	100404179	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008707.1	+1	reviewed	p.V726	0.863	55	0%	69	26.1%	1	0%	-	-	-	NULL
MIR370	442915	genome.wustl.edu	37	14	101377483	101377483	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000362135	+1	known	NULL	0.997	46	0%	60	28.3%	0	-	-	-	-	-
MIR544A	664613	genome.wustl.edu	37	14	101515048	101515048	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384855	+1	known	NULL	1.000	46	0%	46	28.3%	0	-	-	-	-	-
MIR485	574436	genome.wustl.edu	37	14	101521821	101521821	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385292	+1	known	NULL	1.000	49	0%	44	27.3%	0	-	-	-	-	-
DIO3	1735	genome.wustl.edu	37	14	102028328	102028328	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001362.3	+1	reviewed	p.F139	1.000	23	0%	33	15.2%	0	-	-	-	-	HMMPfam_T4_deiodinase
DYNC1H1	1778	genome.wustl.edu	37	14	102442081	102442081	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001376.4	+1	reviewed	p.E97*	1.000	140	0%	130	13.8%	1	100%	-	-	-	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102449796	102449796	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001376.4	+1	reviewed	p.I437	0.679	105	0%	111	24.3%	0	-	-	-	-	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102502868	102502868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001376.4	+1	reviewed	p.F3599L	1.000	164	0%	108	26.9%	12	66.6%	possibly_damaging(0.434)	deleterious(0)	deleterious(0.586)	NULL
RCOR1	23186	genome.wustl.edu	37	14	103188616	103188616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015156.2	+1	validated	p.R425*	1.000	268	0.4%	229	29.7%	2	0%	-	-	-	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
CDC42BPB	9578	genome.wustl.edu	37	14	103429464	103429464	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006035.3	-1	reviewed	p.R919	1.000	92	0%	44	13.6%	1	0%	-	-	-	HMMPfam_DMPK_coil
MARK3	4140	genome.wustl.edu	37	14	103918266	103918266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128918.1	+1	validated	p.E120K	1.000	384	0%	306	25.8%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TDRD9	122402	genome.wustl.edu	37	14	104474793	104474793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153046.2	+1	validated	p.R699I	1.000	299	0%	235	27.7%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
PLD4	122618	genome.wustl.edu	37	14	105397117	105397117	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138790.2	+1	validated	p.H252	1.000	33	6.1%	23	39.1%	5	0%	-	-	-	HMMPfam_PLD_envelope,superfamily_SSF56024
AHNAK2	113146	genome.wustl.edu	37	14	105405818	105405818	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138420.2	-1	validated	p.E5324*	0.002	46	0%	31	35.5%	1	0%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105407698	105407698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138420.2	-1	validated	p.S4697L	0.000	46	0%	27	33.3%	0	-	probably_damaging(0.969)	tolerated(0.73)	neutral(0.413)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105408573	105408573	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138420.2	-1	validated	p.V4405	0.001	80	0%	75	32%	1	0%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105409300	105409300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138420.2	-1	validated	p.A4163V	0.000	72	0%	71	31%	2	0%	benign(0.03)	tolerated(0.2)	neutral(0.051)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105419666	105419666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138420.2	-1	validated	p.D708N	0.792	71	0%	78	32.1%	1	100%	possibly_damaging(0.922)	tolerated(0.05)	deleterious(0.717)	NULL
C14orf79	122616	genome.wustl.edu	37	14	105455297	105455297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174891.3	+1	validated	p.E147D	0.464	46	0%	39	25.6%	16	31.2%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
IGHG1	3500	genome.wustl.edu	37	14	106208474	106208474	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390548	-1	known	p.V142	0.984	226	0%	236	27.5%	5844	0%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
IGHV3-49	28423	genome.wustl.edu	37	14	107013357	107013357	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390625	-1	known	p.L14*	0.001	504	0%	425	28%	0	-	-	-	-	NULL
LOC727924	727924	genome.wustl.edu	37	15	22332448	22332448	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_015416.1	+1	predicted	NULL	1.000	367	0%	365	23.6%	0	-	-	-	-	-
TUBGCP5	114791	genome.wustl.edu	37	15	22836066	22836066	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102610.1	+1	validated	p.I68	0.992	121	0%	125	24%	0	-	-	-	-	NULL
GOLGA8IP	283796	genome.wustl.edu	37	15	23265552	23265552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000450802	+1	known	p.R632I	0.492	170	0%	171	22.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000140181	0	genome.wustl.edu	37	15	23299970	23299970	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000454333	-1	known	p.I102	0.984	122	0%	86	29.1%	11	18.1%	-	-	-	NULL
ENSG00000140181	0	genome.wustl.edu	37	15	23303809	23303809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000454333	-1	known	p.L35R	1.000	1008	0%	788	13.2%	10	50%	-	-	-	NULL
HERC2P2	400322	genome.wustl.edu	37	15	23330484	23330484	+	RNA	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_002824.3	-1	validated	NULL	1.000	161	0%	151	11.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
LOC283685	283685	genome.wustl.edu	37	15	23690482	23690482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343322.1	-1	model	p.S63L	0.059	12	0%	17	41.2%	0	-	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	NULL
MKRN3	7681	genome.wustl.edu	37	15	23812084	23812084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005664.3	+1	reviewed	p.Q385H	1.000	91	0%	96	18.8%	0	-	probably_damaging(0.961)	tolerated(0.06)	deleterious(0.727)	superfamily_SSF57850
SNORD116-4	100033416	genome.wustl.edu	37	15	25304758	25304758	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_003319.1	+1	provisional	NULL	0.009	173	0%	206	25.7%	0	-	-	-	-	-
UBE3A	7337	genome.wustl.edu	37	15	25615773	25615773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000462.2	-1	reviewed	p.L519F	0.995	241	0%	175	25.1%	13	23%	possibly_damaging(0.691)	tolerated(0.09)	deleterious(0.544)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616254	25616254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000462.2	-1	reviewed	p.R359L	1.000	198	0%	156	16.7%	4	50%	benign(0.192)	tolerated(0.29)	neutral(0.047)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25953415	25953415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024490.3	-1	reviewed	p.R793W	0.005	59	0%	49	69.4%	1	100%	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	superfamily_SSF56784,superfamily_SSF81660
GABRG3	2567	genome.wustl.edu	37	15	27772697	27772697	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426363	+1	known	p.S137L	0.993	72	0%	70	44.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OCA2	4948	genome.wustl.edu	37	15	28263546	28263546	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000275.2	-1	reviewed	p.Q268H	0.964	53	0%	25	36%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
HERC2	8924	genome.wustl.edu	37	15	28414721	28414721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004667.4	-1	reviewed	p.L3380F	1.000	308	0%	191	22.5%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
HERC2	8924	genome.wustl.edu	37	15	28473507	28473507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004667.4	-1	reviewed	p.G1774E	1.000	66	0%	70	42.9%	0	-	probably_damaging(0.992)	tolerated(0.2)	deleterious(0.496)	NULL
LOC653720	653720	genome.wustl.edu	37	15	28947104	28947104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001724258.2	-1	model	p.R632I	0.010	213	0%	190	8.9%	0	-	-	-	-	NULL
APBA2	321	genome.wustl.edu	37	15	29346703	29346703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005503.3	+1	reviewed	p.G206S	0.001	21	0%	47	34%	2	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
ENSG00000103832	0	genome.wustl.edu	37	15	31093844	31093844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000220188	+1	known	p.K437T	0.298	33	0%	41	31.7%	0	-	-	-	-	NULL
FAN1	22909	genome.wustl.edu	37	15	31197563	31197563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014967.4	+1	reviewed	p.G233R	0.000	53	0%	65	30.8%	0	-	benign(0.429)	deleterious(0.04)	deleterious(0.488)	NULL
MTMR10	54893	genome.wustl.edu	37	15	31266654	31266654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017762.2	-1	validated	p.D113N	1.000	67	0%	43	25.6%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	superfamily_PH domain-like
TRPM1	4308	genome.wustl.edu	37	15	31294303	31294303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002420.4	-1	reviewed	p.A1512T	0.000	688	0.1%	543	29.3%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31327797	31327797	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002420.4	-1	reviewed	p.W862*	1.000	99	0%	65	16.9%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33855113	33855113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.D350Y	1.000	242	0%	253	23.3%	0	-	probably_damaging(1)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33872331	33872331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.L475I	1.000	83	0%	88	25%	0	-	probably_damaging(0.971)	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	33876639	33876639	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.S539	1.000	51	0%	51	13.7%	0	-	-	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	33895473	33895473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.A691V	1.000	227	0%	174	28.7%	0	-	probably_damaging(0.99)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR3	6263	genome.wustl.edu	37	15	33938641	33938641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.M1285I	1.000	220	0%	193	21.8%	0	-	possibly_damaging(0.794)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33988607	33988607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.L2017M	1.000	115	0%	120	27.5%	0	-	probably_damaging(1)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33991959	33991959	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.R2102*	1.000	46	0%	29	34.5%	0	-	-	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	34047373	34047373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001036.3	+1	validated	p.A2836V	0.998	60	0%	32	21.9%	0	-	benign(0.425)	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34646776	34646776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175741.1	+1	validated	p.I374T	1.000	142	0%	87	20.7%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35275290	35275290	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014106.2	-1	validated	p.R116	1.000	105	0%	99	36.4%	7	71.4%	-	-	-	NULL
C15orf54	400360	genome.wustl.edu	37	15	39544401	39544401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207445.2	+1	validated	p.R22I	0.243	612	0%	686	30.3%	0	-	unknown(0)	-	-	NULL
FSIP1	161835	genome.wustl.edu	37	15	39910127	39910127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152597.4	-1	validated	p.N503S	0.031	502	0%	386	16.6%	0	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40269025	40269025	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013703.2	+1	validated	p.G743	0.000	20	0%	31	32.3%	4	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLCB2	5330	genome.wustl.edu	37	15	40591348	40591348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004573.2	-1	validated	p.D222Y	0.995	63	0%	98	21.4%	2	0%	benign(0.125)	tolerated(0.06)	neutral(0.333)	HMMPfam_efhand_like,superfamily_EF-hand
DISP2	85455	genome.wustl.edu	37	15	40661343	40661343	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033510.1	+1	reviewed	p.L1010	0.001	40	0%	41	24.4%	0	-	-	-	-	superfamily_SSF82866
ENSG00000246741	0	genome.wustl.edu	37	15	40849324	40849324	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501408	+1	known	NULL	0.000	59	0%	80	33.8%	0	-	-	-	-	-
MGA	23269	genome.wustl.edu	37	15	41988793	41988793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080541.2	+1	validated	p.G529C	0.979	213	0%	224	25%	0	-	benign(0.269)	deleterious(0.01)	neutral(0.434)	NULL
MGA	23269	genome.wustl.edu	37	15	42028504	42028504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080541.2	+1	validated	p.R1348W	1.000	171	0%	174	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MGA	23269	genome.wustl.edu	37	15	42041835	42041835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080541.2	+1	validated	p.Q2059H	0.812	214	0%	230	20%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
MGA	23269	genome.wustl.edu	37	15	42042415	42042415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080541.2	+1	validated	p.E2253*	0.008	202	0%	262	26.7%	0	-	-	-	-	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42178542	42178542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016642.2	-1	validated	p.T269R	0.997	10	0%	15	40%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Spectrin repeat
TMEM87A	25963	genome.wustl.edu	37	15	42520982	42520982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015497.3	-1	validated	p.K390Q	1.000	272	0%	199	33.2%	20	45%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_Lung_7-TM_R
GANC	2595	genome.wustl.edu	37	15	42632940	42632940	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198141.2	+1	reviewed	p.E714*	1.000	147	0%	119	24.4%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
CAPN3	825	genome.wustl.edu	37	15	42678425	42678425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000070.2	+1	reviewed	p.R147Q	1.000	102	0%	94	29.8%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
ZFP106	64397	genome.wustl.edu	37	15	42730815	42730815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022473.1	-1	provisional	p.S1509Y	1.000	69	0%	50	22%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SNAP23	8773	genome.wustl.edu	37	15	42820618	42820618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003825.2	+1	reviewed	p.R142H	1.000	98	0%	45	37.8%	12	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00397,HMMPfam_SNAP-25
TTBK2	146057	genome.wustl.edu	37	15	43067613	43067613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173500.3	-1	reviewed	p.K573T	1.000	283	0%	341	25.8%	0	-	benign(0.129)	deleterious(0)	neutral(0.456)	NULL
UBR1	197131	genome.wustl.edu	37	15	43277128	43277128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174916.2	-1	reviewed	p.G1337E	1.000	309	0%	350	20.9%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
UBR1	197131	genome.wustl.edu	37	15	43328743	43328743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174916.2	-1	reviewed	p.D691Y	1.000	114	0%	119	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR1	197131	genome.wustl.edu	37	15	43340621	43340621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174916.2	-1	reviewed	p.R503Q	1.000	147	0%	128	32%	0	-	benign(0.133)	tolerated(0.57)	neutral(0.017)	NULL
TMEM62	80021	genome.wustl.edu	37	15	43452969	43452969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024956.3	+1	provisional	p.L425I	1.000	189	0%	164	20.7%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814314	43814314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002373.5	+1	reviewed	p.L215I	1.000	61	0%	70	21.4%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814480	43814480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002373.5	+1	reviewed	p.N270S	1.000	57	0%	62	27.4%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43815532	43815532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002373.5	+1	reviewed	p.D621Y	0.821	44	0%	60	23.3%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43818851	43818851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002373.5	+1	reviewed	p.S1727N	1.000	77	0%	89	34.8%	0	-	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	NULL
PPIP5K1	9677	genome.wustl.edu	37	15	43826986	43826986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130858.1	-1	validated	p.E1396D	0.038	150	0%	134	32.8%	3	0%	benign(0.04)	deleterious(0.03)	neutral(0.367)	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43928011	43928011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172095.1	-1	reviewed	p.Q345H	1.000	84	0%	98	35.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Voltage-gated potassium channels
ELL3	80237	genome.wustl.edu	37	15	44068065	44068065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025165.2	-1	validated	p.W113L	1.000	91	0%	83	27.7%	0	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	HMMPfam_ELL
SPG11	80208	genome.wustl.edu	37	15	44944435	44944435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025137.3	-1	reviewed	p.R300I	0.997	125	0%	96	27.1%	0	-	possibly_damaging(0.532)	tolerated(0.17)	neutral(0.239)	NULL
TRIM69	140691	genome.wustl.edu	37	15	45059668	45059668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182985.3	+1	reviewed	p.R401W	0.997	445	0%	402	23.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
DUOX2	50506	genome.wustl.edu	37	15	45391589	45391589	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014080.4	-1	reviewed	p.V1169	0.159	31	0%	27	29.6%	0	-	-	-	-	HMMPfam_Ferric_reduct
SQRDL	58472	genome.wustl.edu	37	15	45968306	45968306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021199.2	+1	provisional	p.K221T	1.000	246	0%	364	25%	44	47.7%	benign(0.208)	tolerated(0.08)	neutral(0.320)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
SEMA6D	80031	genome.wustl.edu	37	15	48057155	48057155	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153618.1	+1	reviewed	p.S443	0.047	219	0%	185	30.3%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48058156	48058156	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153618.1	+1	reviewed	p.C506	0.815	279	0%	271	26.9%	0	-	-	-	-	superfamily_Sema domain
SLC12A1	6557	genome.wustl.edu	37	15	48593536	48593536	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000338.2	+1	reviewed	p.E1041*	1.000	35	0%	34	20.6%	0	-	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48703282	48703282	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.E2841*	1.000	197	0.5%	109	24.8%	3	0%	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48719807	48719807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.K2387N	1.000	106	0%	131	29%	3	0%	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN1	2200	genome.wustl.edu	37	15	48760624	48760624	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.R1523*	0.997	105	0%	57	29.8%	0	-	-	-	-	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48776136	48776136	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.I1239	0.816	110	0%	76	23.7%	0	-	-	-	-	HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48782078	48782078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.E1018*	1.000	120	0%	82	28%	0	-	-	-	-	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN1	2200	genome.wustl.edu	37	15	48787750	48787750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.G819*	1.000	407	0%	322	23.3%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48789529	48789529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000138.4	-1	reviewed	p.R743C	1.000	169	0%	194	26.3%	0	-	possibly_damaging(0.929)	tolerated(0.17)	neutral(0.435)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CEP152	22995	genome.wustl.edu	37	15	49031110	49031110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014985.2	-1	provisional	p.L1434R	0.000	337	0%	338	27.5%	2	50%	possibly_damaging(0.59)	deleterious(0)	deleterious(0.648)	NULL
EID1	23741	genome.wustl.edu	37	15	49170772	49170772	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014335.2	+1	validated	p.K133	1.000	105	0%	113	19.5%	40	45%	-	-	-	NULL
C15orf33	196951	genome.wustl.edu	37	15	49833922	49833922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152647.2	-1	validated	p.E277*	0.999	343	0%	450	30.2%	0	-	-	-	-	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50189583	50189583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024837.2	-1	validated	p.R868Q	1.000	687	0%	450	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50223502	50223502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024837.2	-1	validated	p.E486*	0.563	240	0%	362	22.9%	0	-	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50288950	50288950	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024837.2	-1	validated	p.T171	0.021	79	0%	100	24%	1	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
USP8	9101	genome.wustl.edu	37	15	50773935	50773935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128610.1	+1	validated	p.E492D	1.000	106	0%	116	22.4%	1	0%	possibly_damaging(0.783)	tolerated(0.56)	neutral(0.299)	NULL
USP50	373509	genome.wustl.edu	37	15	50835837	50835837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203494.4	-1	validated	p.F139L	1.000	73	0%	72	15.3%	0	-	probably_damaging(0.986)	tolerated(0.66)	neutral(0.437)	HMMPfam_UCH,superfamily_SSF54001
TRPM7	54822	genome.wustl.edu	37	15	50853889	50853889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017672.4	-1	reviewed	p.R1862C	1.000	106	0%	103	19.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51226862	51226862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007347.3	+1	validated	p.R304Q	1.000	78	0%	49	30.6%	1	0%	probably_damaging(0.981)	tolerated(0.18)	deleterious(0.481)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
AP4E1	23431	genome.wustl.edu	37	15	51285712	51285712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007347.3	+1	validated	p.T746P	0.000	250	0.4%	179	29.1%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51289671	51289671	+	Missense_Mutation	SNP	C	C	T	rs144189610	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007347.3	+1	validated	p.S832L	0.139	331	0%	251	29.9%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
CYP19A1	1588	genome.wustl.edu	37	15	51503245	51503245	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000103.3	-1	reviewed	p.Y424	0.995	218	0%	146	28.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
GLDN	342035	genome.wustl.edu	37	15	51689762	51689762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181789.2	+1	validated	p.R262W	0.834	48	0%	37	32.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51743895	51743895	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015263.3	-1	validated	e41-1	1.000	116	0%	77	26%	0	-	-	-	-	-
DMXL2	23312	genome.wustl.edu	37	15	51792160	51792160	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015263.3	-1	validated	p.K1087	0.998	133	0%	105	28.6%	1	0%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51828783	51828783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015263.3	-1	validated	p.S632P	0.999	320	0%	249	30.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
MYO5C	55930	genome.wustl.edu	37	15	52534331	52534331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018728.2	-1	validated	p.R824C	0.956	390	0%	296	31.8%	2	50%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5C	55930	genome.wustl.edu	37	15	52534406	52534406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018728.2	-1	validated	p.A799S	1.000	252	0%	210	23.3%	3	0%	benign(0.032)	tolerated(0.19)	neutral(0.051)	HMMSmart_SM00015
MYO5A	4644	genome.wustl.edu	37	15	52672020	52672020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000259.3	-1	reviewed	p.R700W	0.795	182	0%	121	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52718114	52718114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000259.3	-1	reviewed	p.I123T	1.000	170	0%	122	18.9%	0	-	possibly_damaging(0.943)	tolerated(0.54)	neutral(0.395)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM214A	56204	genome.wustl.edu	37	15	52900909	52900909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019600.2	-1	validated	p.F734L	0.128	147	0%	109	23.9%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
WDR72	256764	genome.wustl.edu	37	15	53905952	53905952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.S928Y	0.979	238	0%	291	19.6%	1	0%	benign(0.273)	deleterious(0.04)	neutral(0.378)	NULL
WDR72	256764	genome.wustl.edu	37	15	53907886	53907886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.F839L	1.000	549	0.2%	596	30.2%	1	100%	benign(0.001)	tolerated(0.85)	neutral(0.001)	NULL
WDR72	256764	genome.wustl.edu	37	15	53907917	53907917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.S829Y	1.000	651	0%	715	23.1%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	NULL
WDR72	256764	genome.wustl.edu	37	15	53992005	53992005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.E569D	0.998	489	0%	342	20.2%	1	0%	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR72	256764	genome.wustl.edu	37	15	53994475	53994475	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.S475	0.786	300	0%	212	32.5%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR72	256764	genome.wustl.edu	37	15	54007452	54007452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182758.2	-1	validated	p.R151K	0.001	170	0%	123	21.1%	0	-	benign(0.002)	tolerated(0.94)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
UNC13C	440279	genome.wustl.edu	37	15	54305923	54305923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080534.1	+1	provisional	p.D275N	1.000	339	0%	275	33.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54306276	54306276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080534.1	+1	provisional	p.K392N	1.000	270	0%	244	32%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307945	54307945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080534.1	+1	provisional	p.E949*	1.000	171	0%	128	26.6%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54685316	54685316	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080534.1	+1	provisional	p.L1595R	1.000	170	0%	181	24.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1041
CCPG1	9236	genome.wustl.edu	37	15	55651802	55651802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004748.3	-1	validated	p.E723D	1.000	71	0%	71	26.8%	13	23%	benign(0.349)	tolerated(0.55)	neutral(0.118)	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838864	55838864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015617.1	-1	provisional	p.P206H	1.000	265	0%	275	32.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PRTG	283659	genome.wustl.edu	37	15	55912260	55912260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173814.4	-1	validated	p.D1135N	1.000	198	0%	148	19.6%	0	-	benign(0.043)	deleterious(0.02)	neutral(0.386)	NULL
PRTG	283659	genome.wustl.edu	37	15	55971598	55971598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173814.4	-1	validated	p.R340Q	1.000	142	0%	116	24.1%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TEX9	374618	genome.wustl.edu	37	15	56657869	56657869	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198524.1	+1	provisional	e2+1	1.000	136	0%	82	18.3%	0	-	-	-	-	-
TEX9	374618	genome.wustl.edu	37	15	56704563	56704563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198524.1	+1	provisional	p.R298C	1.000	420	0%	350	36%	2	50%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56923710	56923710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017661.2	-1	validated	p.K976Q	0.762	192	0%	180	31.7%	6	66.6%	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56958922	56958922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017661.2	-1	validated	p.S603I	0.776	241	0%	184	28.8%	2	100%	possibly_damaging(0.688)	tolerated(0.09)	deleterious(0.542)	NULL
TCF12	6938	genome.wustl.edu	37	15	57565313	57565313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207036.1	+1	reviewed	p.R611C	1.000	255	0%	212	23.6%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
CGNL1	84952	genome.wustl.edu	37	15	57820903	57820903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032866.3	+1	validated	p.A1031T	1.000	287	0.3%	209	34.9%	7	14.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57976681	57976681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001018100.2	+1	reviewed	p.K462N	1.000	248	0%	221	25.3%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
ALDH1A2	8854	genome.wustl.edu	37	15	58302863	58302863	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003888.2	-1	reviewed	p.G159	0.995	151	0.7%	98	39.8%	0	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
ALDH1A2	8854	genome.wustl.edu	37	15	58302943	58302943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003888.2	-1	reviewed	p.L133M	1.000	127	0%	107	25.2%	0	-	benign(0.361)	tolerated(0.13)	neutral(0.367)	HMMPfam_Aldedh,superfamily_ALDH-like
AQP9	366	genome.wustl.edu	37	15	58467202	58467202	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020980.3	+1	reviewed	p.P154	0.000	144	0%	97	24.7%	2	0%	-	-	-	HMMPfam_MIP,superfamily_Aquaporin-like
SLTM	79811	genome.wustl.edu	37	15	59185137	59185137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024755.2	-1	validated	p.L619F	1.000	215	0%	148	17.6%	3	33.3%	unknown(0)	tolerated(0.13)	-	NULL
SLTM	79811	genome.wustl.edu	37	15	59186159	59186159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024755.2	-1	validated	p.E503D	0.630	233	0%	160	38.1%	0	-	benign(0.016)	tolerated(0.22)	neutral(0.043)	NULL
SLTM	79811	genome.wustl.edu	37	15	59205860	59205860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024755.2	-1	validated	p.Q117H	1.000	247	0%	268	31%	2	50%	possibly_damaging(0.888)	tolerated(0.1)	deleterious(0.634)	NULL
RNF111	54778	genome.wustl.edu	37	15	59323665	59323665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017610.6	+1	reviewed	p.R215I	1.000	355	0%	344	22.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59466433	59466433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004998.2	-1	validated	p.L686I	1.000	201	0%	156	27.6%	3	33.3%	possibly_damaging(0.735)	tolerated(0.2)	neutral(0.318)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1E	4643	genome.wustl.edu	37	15	59502775	59502775	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004998.2	-1	validated	p.R434	0.128	141	0%	88	23.9%	3	33.3%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100130107	100130107	genome.wustl.edu	37	15	60060607	60060607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001719310.2	-1	model	p.L214I	1.000	85	0%	117	22.2%	227	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62214161	62214161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020821.1	-1	validated	p.W2349C	1.000	447	0%	251	27.9%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62221754	62221754	+	Nonsense_Mutation	SNP	C	C	A	rs191791132		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020821.1	-1	validated	p.E2078*	0.986	193	0%	160	23.7%	0	-	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62256049	62256049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020821.1	-1	validated	p.E1106K	1.000	208	0%	180	27.2%	0	-	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62256067	62256067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020821.1	-1	validated	p.E1100K	1.000	196	0%	171	32.2%	0	-	possibly_damaging(0.904)	tolerated(0.23)	neutral(0.400)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62269297	62269297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020821.1	-1	validated	p.D798Y	1.000	194	0%	119	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLN2	83660	genome.wustl.edu	37	15	62948164	62948164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015059.2	+1	reviewed	p.R180Q	1.000	100	0%	81	33.3%	0	-	possibly_damaging(0.896)	tolerated(0.16)	neutral(0.413)	HMMPfam_FERM_N,HMMSmart_B41
TLN2	83660	genome.wustl.edu	37	15	62948246	62948246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015059.2	+1	reviewed	p.D207E	1.000	104	0%	84	22.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
TLN2	83660	genome.wustl.edu	37	15	63000932	63000932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015059.2	+1	reviewed	p.D802N	1.000	27	0%	20	30%	2	100%	benign(0.196)	deleterious(0.04)	neutral(0.367)	superfamily_SSF109885
TLN2	83660	genome.wustl.edu	37	15	63125738	63125738	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015059.2	+1	reviewed	p.I2346	0.997	188	0%	174	14.9%	4	0%	-	-	-	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,superfamily_SSF109885
LACTB	114294	genome.wustl.edu	37	15	63419597	63419597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032857.2	+1	reviewed	p.R221C	1.000	129	0%	113	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
APH1B	83464	genome.wustl.edu	37	15	63571483	63571483	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031301.3	+1	validated	p.S79	0.005	137	0%	99	28.3%	0	-	-	-	-	HMMPfam_Aph-1
HERC1	8925	genome.wustl.edu	37	15	64048805	64048805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003922.3	-1	reviewed	p.R455I	1.000	139	0%	134	28.4%	0	-	probably_damaging(0.969)	-	-	superfamily_RCC1/BLIP-II
HERC1	8925	genome.wustl.edu	37	15	64048815	64048815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003922.3	-1	reviewed	p.E452K	1.000	136	0%	125	30.4%	0	-	probably_damaging(0.985)	-	-	superfamily_RCC1/BLIP-II
SNX1	6642	genome.wustl.edu	37	15	64418352	64418352	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003099.3	+1	reviewed	p.E195	1.000	135	0%	107	32.7%	5	40%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SNX1	6642	genome.wustl.edu	37	15	64422171	64422171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003099.3	+1	reviewed	p.F288L	1.000	71	0%	77	31.2%	28	42.8%	benign(0.004)	tolerated(0.31)	neutral(0.027)	HMMPfam_Vps5
OAZ2	4947	genome.wustl.edu	37	15	64980914	64980914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002537.2	-1	reviewed	p.D187N	1.000	32	0%	26	30.8%	75	42.6%	benign(0.042)	tolerated(0.08)	neutral(0.302)	NULL
ANKDD1A	348094	genome.wustl.edu	37	15	65223091	65223091	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182703.3	+1	validated	p.I214	0.169	21	0%	35	25.7%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PDCD7	10081	genome.wustl.edu	37	15	65412129	65412129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005707.1	-1	reviewed	p.K391N	1.000	227	0%	322	37%	0	-	benign(0.046)	tolerated(0.13)	neutral(0.255)	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65628180	65628180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004884.3	-1	validated	p.N175I	1.000	73	0%	100	25%	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DPP8	54878	genome.wustl.edu	37	15	65782575	65782575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_197960.2	-1	reviewed	p.E276*	1.000	136	0%	118	37.3%	0	-	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DENND4A	10260	genome.wustl.edu	37	15	65983022	65983022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144823.1	-1	validated	p.V1303M	0.068	172	0%	160	20%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66606425	66606425	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133375.3	+1	validated	p.R179*	1.000	41	0%	50	28%	1	0%	-	-	-	NULL
DIS3L	115752	genome.wustl.edu	37	15	66621357	66621357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133375.3	+1	validated	p.D668N	0.998	170	0%	140	31.4%	6	66.6%	probably_damaging(0.981)	tolerated(0.76)	neutral(0.426)	HMMPfam_RNB
TIPIN	54962	genome.wustl.edu	37	15	66641713	66641713	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017858.2	-1	validated	p.K117N	1.000	169	0%	164	35.4%	14	50%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_Swi3
LCTL	197021	genome.wustl.edu	37	15	66850102	66850102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207338.2	-1	validated	p.I294V	1.000	252	0%	267	30.3%	0	-	possibly_damaging(0.625)	tolerated(0.07)	deleterious(0.537)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
IQCH	64799	genome.wustl.edu	37	15	67664855	67664855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031715.2	+1	validated	p.K387T	0.000	381	0%	355	33.8%	0	-	probably_damaging(0.988)	tolerated(0.6)	neutral(0.442)	HMMPfam_IQ
IQCH	64799	genome.wustl.edu	37	15	67713870	67713870	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031715.2	+1	validated	p.S820	0.001	171	0%	168	26.8%	0	-	-	-	-	NULL
PIAS1	8554	genome.wustl.edu	37	15	68473683	68473683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016166.1	+1	reviewed	p.D539N	1.000	73	0%	62	41.9%	12	8.3%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
SPESP1	246777	genome.wustl.edu	37	15	69238449	69238449	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145658.3	+1	reviewed	p.I192	0.000	221	0%	273	32.6%	0	-	-	-	-	NULL
NOX5	79400	genome.wustl.edu	37	15	69347681	69347681	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024505.3	+1	validated	p.F651	1.000	48	0%	81	35.8%	0	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_SSF52343
GLCE	26035	genome.wustl.edu	37	15	69560903	69560903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015554.1	+1	validated	p.D392N	1.000	114	0%	87	25.3%	2	0%	probably_damaging(0.956)	tolerated(0.06)	deleterious(0.722)	NULL
KIF23	9493	genome.wustl.edu	37	15	69730600	69730600	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138555.1	+1	reviewed	p.K523N	0.997	121	0%	124	29%	4	50%	possibly_damaging(0.833)	deleterious(0.01)	deleterious(0.723)	NULL
LRRC49	54839	genome.wustl.edu	37	15	71185952	71185952	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017691.2	+1	validated	p.Q26	0.997	107	0%	134	31.3%	0	-	-	-	-	NULL
LRRC49	54839	genome.wustl.edu	37	15	71272474	71272474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017691.2	+1	validated	p.K319R	1.000	254	0%	173	22.5%	0	-	benign(0)	tolerated(0.88)	-	NULL
NR2E3	10002	genome.wustl.edu	37	15	72106454	72106454	+	Missense_Mutation	SNP	G	G	A	rs150971548	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014249.2	+1	reviewed	p.V366M	0.983	24	0%	23	43.5%	0	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
SENP8	123228	genome.wustl.edu	37	15	72432105	72432105	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145204.3	+1	reviewed	p.C47	0.167	445	0%	299	19.7%	3	33.3%	-	-	-	HMMPfam_Peptidase_C48,superfamily_SSF54001
GRAMD2	196996	genome.wustl.edu	37	15	72457721	72457721	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012642.2	-1	validated	p.E192*	0.997	69	0%	88	29.5%	0	-	-	-	-	NULL
TMEM202	338949	genome.wustl.edu	37	15	72700068	72700068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080462.1	+1	provisional	p.S219*	0.000	138	0%	184	22.3%	0	-	-	-	-	NULL
BBS4	585	genome.wustl.edu	37	15	73007664	73007664	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033028.3	+1	reviewed	p.E85*	1.000	259	0%	167	18%	0	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
NEO1	4756	genome.wustl.edu	37	15	73408998	73408998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002499.3	+1	validated	p.K83I	1.000	551	0%	440	26.6%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ISLR2	57611	genome.wustl.edu	37	15	74426677	74426677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130136.1	+1	validated	p.R528C	0.996	9	0.000	6	0.667	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ISLR	3671	genome.wustl.edu	37	15	74467745	74467745	+	Silent	SNP	C	C	T	rs187982067	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005545.3	+1	validated	p.F182	0.595	57	0%	52	26.9%	194	0%	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
CYP1A1	1543	genome.wustl.edu	37	15	75014819	75014819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000499.3	-1	reviewed	p.Y207C	1.000	54	0%	64	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome P450
LOC646791	646791	genome.wustl.edu	37	15	75614252	75614252	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_017650.3	-1	model	NULL	0.051	96	0%	118	33.1%	0	-	-	-	-	-
PTPN9	5780	genome.wustl.edu	37	15	75815580	75815580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002833.2	-1	reviewed	p.R102W	1.000	77	0%	107	41.1%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
CSPG4	1464	genome.wustl.edu	37	15	75970057	75970057	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001897.4	-1	reviewed	p.L1707	0.995	41	0%	70	21.4%	4	50%	-	-	-	NULL
UBE2Q2	92912	genome.wustl.edu	37	15	76165844	76165844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173469.2	+1	validated	p.I175L	1.000	152	0%	187	33.2%	0	-	benign(0.011)	tolerated(0.45)	neutral(0.013)	NULL
UBE2Q2	92912	genome.wustl.edu	37	15	76175737	76175737	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173469.2	+1	validated	p.R286*	0.997	153	0%	180	26.7%	4	0%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
FBXO22	26263	genome.wustl.edu	37	15	76205629	76205629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147188.1	+1	reviewed	p.R122K	1.000	93	0%	77	23.4%	12	50%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
FBXO22	26263	genome.wustl.edu	37	15	76225245	76225245	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147188.1	+1	reviewed	p.G338	0.003	288	0%	189	24.9%	33	27.2%	-	-	-	HMMPfam_FIST_C
SCAPER	49855	genome.wustl.edu	37	15	76673874	76673874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020843.2	-1	validated	p.L1183I	0.849	29	0%	44	25%	1	0%	possibly_damaging(0.879)	tolerated(0.76)	neutral(0.344)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77064115	77064115	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020843.2	-1	validated	p.E405*	1.000	623	0%	504	13.5%	0	-	-	-	-	NULL
SCAPER	49855	genome.wustl.edu	37	15	77064249	77064249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020843.2	-1	validated	p.R360Q	0.013	501	0%	368	23.1%	0	-	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77067330	77067330	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020843.2	-1	validated	p.E300*	1.000	357	0%	267	28.1%	0	-	-	-	-	NULL
SGK269	79834	genome.wustl.edu	37	15	77471638	77471638	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024776.2	-1	validated	p.S877	0.990	151	0%	123	24.4%	4	50%	-	-	-	NULL
CIB2	10518	genome.wustl.edu	37	15	78401709	78401709	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006383.2	-1	validated	p.E72*	1.000	55	0%	79	26.6%	1	0%	-	-	-	superfamily_SSF47473
CHRNB4	1143	genome.wustl.edu	37	15	78921964	78921964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000750.3	-1	validated	p.I228T	1.000	165	0%	232	26.3%	0	-	possibly_damaging(0.841)	deleterious(0)	deleterious(0.766)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ADAMTS7	11173	genome.wustl.edu	37	15	79089028	79089028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014272.3	-1	reviewed	p.E241D	1.000	52	0%	73	9.6%	1	0%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
KIAA1024	23251	genome.wustl.edu	37	15	79748612	79748612	+	Silent	SNP	G	G	A	rs146044996	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015206.2	+1	validated	p.S41	0.098	134	0%	191	25.1%	0	-	-	-	-	NULL
ARNT2	9915	genome.wustl.edu	37	15	80866545	80866545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014862.3	+1	reviewed	p.S458L	0.994	65	0%	86	36%	10	40%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81173443	81173443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018689.1	+1	validated	p.D195N	0.691	192	0%	139	13.7%	7	14.2%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81224265	81224265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018689.1	+1	validated	p.R893Q	0.999	233	0%	167	18%	7	42.8%	possibly_damaging(0.827)	tolerated(0.11)	deleterious(0.586)	NULL
C15orf26	161502	genome.wustl.edu	37	15	81440852	81440852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173528.2	+1	predicted	p.A295V	0.002	85	0%	89	29.2%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
IL16	3603	genome.wustl.edu	37	15	81571987	81571987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172217.3	+1	reviewed	p.C318Y	1.000	77	0%	101	33.7%	0	-	possibly_damaging(0.597)	tolerated(0.39)	neutral(0.222)	NULL
IL16	3603	genome.wustl.edu	37	15	81598384	81598384	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172217.3	+1	reviewed	p.R1186*	0.992	146	0%	112	24.1%	47	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TMC3	342125	genome.wustl.edu	37	15	81625493	81625493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080532.1	-1	provisional	p.R857Q	0.966	117	0%	89	38.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMC3	342125	genome.wustl.edu	37	15	81631802	81631802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080532.1	-1	provisional	p.L630M	1.000	25	0%	29	37.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TMC3	342125	genome.wustl.edu	37	15	81633816	81633816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080532.1	-1	provisional	p.L587I	0.976	38	0%	33	15.2%	0	-	benign(0.172)	tolerated(0.28)	neutral(0.047)	HMMPfam_TMC
TMC3	342125	genome.wustl.edu	37	15	81635682	81635682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080532.1	-1	provisional	p.E551G	1.000	145	0%	143	33.6%	0	-	benign(0.415)	tolerated(0.29)	neutral(0.164)	HMMPfam_TMC
MEX3B	84206	genome.wustl.edu	37	15	82336338	82336338	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032246.3	-1	provisional	p.S291	0.216	18	0%	12	41.7%	0	-	-	-	-	NULL
MEX3B	84206	genome.wustl.edu	37	15	82336472	82336472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032246.3	-1	provisional	p.D247N	1.000	45	0%	41	12.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FAM154B	283726	genome.wustl.edu	37	15	82564057	82564057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008226.1	+1	predicted	p.S56L	0.633	197	0%	246	21.1%	0	-	benign(0.059)	tolerated(0.15)	neutral(0.245)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83334220	83334220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004644.3	-1	validated	p.R654C	1.000	43	0%	55	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83350216	83350216	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004644.3	-1	validated	p.P159	0.996	44	0%	36	27.8%	1	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FSD2	123722	genome.wustl.edu	37	15	83431013	83431013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007122.2	-1	provisional	p.G613V	0.998	91	0%	95	25.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WHAMM	123720	genome.wustl.edu	37	15	83495207	83495207	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080435.1	+1	provisional	p.E502*	0.809	162	0.6%	159	26.4%	0	-	-	-	-	NULL
BNC1	646	genome.wustl.edu	37	15	83926485	83926485	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001717.3	-1	reviewed	p.S898	0.970	366	0%	414	29.2%	0	-	-	-	-	NULL
BNC1	646	genome.wustl.edu	37	15	83933489	83933489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001717.3	-1	reviewed	p.R172C	1.000	178	0%	134	23.9%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
BNC1	646	genome.wustl.edu	37	15	83935666	83935666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001717.3	-1	reviewed	p.L119F	1.000	208	0%	186	19.9%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84683415	84683415	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207517.2	+1	validated	p.Y1365	0.113	147	0%	164	17.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PDE8A	5151	genome.wustl.edu	37	15	85669532	85669532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002605.2	+1	validated	p.V727A	1.000	192	0%	145	11%	11	18.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
AKAP13	11214	genome.wustl.edu	37	15	86124750	86124750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006738.4	+1	reviewed	p.E1151*	0.010	161	0%	111	28.8%	0	-	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86227984	86227984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006738.4	+1	reviewed	p.E1727D	0.941	281	0%	224	29.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
AKAP13	11214	genome.wustl.edu	37	15	86269670	86269670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006738.4	+1	reviewed	p.L2263V	0.961	192	0%	189	31.2%	2	0%	possibly_damaging(0.843)	deleterious(0.02)	deleterious(0.706)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
AGBL1	123624	genome.wustl.edu	37	15	86801196	86801196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152336.2	+1	validated	p.E255D	0.662	473	0%	424	31.6%	0	-	benign(0.009)	tolerated(0.13)	neutral(0.253)	NULL
AGBL1	123624	genome.wustl.edu	37	15	86807791	86807791	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152336.2	+1	validated	p.P417	0.000	270	0%	207	24.2%	0	-	-	-	-	NULL
AGBL1	123624	genome.wustl.edu	37	15	87066049	87066049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152336.2	+1	validated	p.C809Y	1.000	347	0%	358	27.4%	0	-	possibly_damaging(0.521)	deleterious(0.02)	deleterious(0.558)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
NTRK3	4916	genome.wustl.edu	37	15	88476340	88476340	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012338.1	-1	reviewed	p.E598*	1.000	79	0%	62	22.6%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MFGE8	4240	genome.wustl.edu	37	15	89442929	89442929	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005928.2	-1	validated	p.A328	0.000	224	0.4%	377	26.5%	434	42.1%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
MFGE8	4240	genome.wustl.edu	37	15	89449889	89449889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005928.2	-1	validated	p.D170N	0.620	69	0%	65	44.6%	166	77.7%	benign(0.039)	tolerated(0.38)	neutral(0.020)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
POLG	5428	genome.wustl.edu	37	15	89864000	89864000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001126131.1	-1	reviewed	p.R993H	1.000	19	0%	41	19.5%	26	53.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DNA_pol_A,HMMSmart_POLAc,superfamily_SSF56672
C15orf42	90381	genome.wustl.edu	37	15	90137785	90137785	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152259.3	+1	validated	p.R561*	1.000	168	0%	123	23.6%	0	-	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90342704	90342704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001150.2	-1	reviewed	p.E636K	0.000	40	0%	88	27.3%	27	44.4%	benign(0.062)	tolerated(0.51)	neutral(0.013)	NULL
ANPEP	290	genome.wustl.edu	37	15	90344341	90344341	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001150.2	-1	reviewed	e11+1	0.991	36	0%	31	38.7%	0	-	-	-	-	-
ZNF774	342132	genome.wustl.edu	37	15	90904247	90904247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004309.2	+1	validated	p.R395L	0.954	163	0%	183	29.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IQGAP1	8826	genome.wustl.edu	37	15	91019920	91019920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003870.3	+1	reviewed	p.L937R	1.000	322	0%	200	26%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS33B	26276	genome.wustl.edu	37	15	91544668	91544668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018668.3	-1	reviewed	p.S477Y	1.000	79	0%	99	31.3%	34	44.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
ENSG00000214432	0	genome.wustl.edu	37	15	91573294	91573294	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000501381	+1	novel	NULL	0.518	62	0%	62	11.3%	0	-	-	-	-	-
SV2B	9899	genome.wustl.edu	37	15	91824956	91824956	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014848.4	+1	validated	e9-2	1.000	158	0%	142	12%	0	-	-	-	-	-
SLCO3A1	28232	genome.wustl.edu	37	15	92663839	92663839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013272.3	+1	validated	p.S385Y	1.000	119	0%	147	24.5%	7	42.8%	possibly_damaging(0.757)	deleterious(0)	deleterious(0.724)	HMMPfam_OATP,superfamily_MFS general substrate transporter
CHD2	1106	genome.wustl.edu	37	15	93489376	93489376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001271.3	+1	reviewed	p.K436T	1.000	233	0%	207	25.6%	3	100%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
MCTP2	55784	genome.wustl.edu	37	15	95001398	95001398	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018349.3	+1	validated	p.I761	1.000	93	0%	63	23.8%	2	100%	-	-	-	NULL
IGF1R	3480	genome.wustl.edu	37	15	99452077	99452077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000875.3	+1	reviewed	p.R471C	0.998	57	0%	41	24.4%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF52058
IGF1R	3480	genome.wustl.edu	37	15	99460067	99460067	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000875.3	+1	reviewed	p.V721	0.955	75	0%	69	23.2%	1	0%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
SYNM	23336	genome.wustl.edu	37	15	99672562	99672562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000336292	+1	known	p.L1332M	0.000	143	0%	168	14.3%	0	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	NULL
HSP90B2P	7190	genome.wustl.edu	37	15	99799703	99799703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000378906	+1	known	p.K267N	1.000	92	0%	80	21.2%	1	100%	-	-	-	HMMPfam_HSP90,superfamily_SSF110942
CERS3	204219	genome.wustl.edu	37	15	100996236	100996236	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178842.3	-1	validated	p.T287	0.004	103	0%	135	28.1%	0	-	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
CERS3	204219	genome.wustl.edu	37	15	101031058	101031058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178842.3	-1	validated	p.E84D	1.000	154	0%	123	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
LINS	55180	genome.wustl.edu	37	15	101114417	101114417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040614.1	-1	reviewed	p.D221N	0.326	100	0%	140	24.3%	0	-	benign(0.116)	deleterious(0)	neutral(0.454)	NULL
ALDH1A3	220	genome.wustl.edu	37	15	101427837	101427837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000693.2	+1	reviewed	p.R89C	1.000	23	0%	48	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
OR4F6	390648	genome.wustl.edu	37	15	102346130	102346130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005326.1	+1	provisional	p.N70H	0.576	670	0%	1000	34%	0	-	benign(0.064)	deleterious(0)	neutral(0.449)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4F15	390649	genome.wustl.edu	37	15	102358659	102358659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001674.1	+1	provisional	p.K90N	0.045	732	0%	713	23.6%	0	-	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4F15	390649	genome.wustl.edu	37	15	102358805	102358805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001674.1	+1	provisional	p.R139K	0.000	932	0%	878	30.1%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ABCA3	21	genome.wustl.edu	37	16	2349494	2349494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001089.2	-1	reviewed	p.D551Y	0.993	29	0%	45	33.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SRRM2	23524	genome.wustl.edu	37	16	2815594	2815594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016333.3	+1	validated	p.R1689C	0.824	120	0%	169	33.1%	47	46.8%	unknown(0)	-	-	NULL
PRSS21	10942	genome.wustl.edu	37	16	2871451	2871451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006799.2	+1	reviewed	p.R264W	0.000	19	0%	27	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
THOC6	79228	genome.wustl.edu	37	16	3077066	3077066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024339.3	+1	validated	p.D231N	0.998	19	0%	27	18.5%	62	33.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_WD40 repeat-like
ZSCAN10	84891	genome.wustl.edu	37	16	3141569	3141569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032805.1	-1	provisional	p.E198D	0.000	52	0%	49	26.5%	0	-	benign(0.288)	tolerated(0.14)	neutral(0.338)	NULL
MEFV	4210	genome.wustl.edu	37	16	3299592	3299592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000243.2	-1	reviewed	p.L367I	0.000	15	0%	24	25%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	NULL
ZNF263	10127	genome.wustl.edu	37	16	3339418	3339418	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005741.4	+1	validated	p.E304D	0.263	111	0%	87	28.7%	1	0%	possibly_damaging(0.655)	tolerated(0.14)	deleterious(0.480)	NULL
ZNF263	10127	genome.wustl.edu	37	16	3340035	3340035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005741.4	+1	validated	p.R510I	1.000	53	0%	53	20.8%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF263	10127	genome.wustl.edu	37	16	3340119	3340119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005741.4	+1	validated	p.R538I	1.000	61	0%	42	19%	6	66.6%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF597	146434	genome.wustl.edu	37	16	3486428	3486428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152457.1	-1	provisional	p.T424M	0.000	47	0%	51	11.8%	0	-	probably_damaging(0.985)	-	-	NULL
ZNF597	146434	genome.wustl.edu	37	16	3487414	3487414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152457.1	-1	provisional	p.E95D	0.364	134	0%	192	30.2%	0	-	benign(0.008)	tolerated(0.52)	neutral(0.009)	NULL
SLX4	84464	genome.wustl.edu	37	16	3658963	3658963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032444.2	-1	provisional	p.M1I	0.195	97	0%	63	19%	0	-	unknown(0)	-	-	NULL
ADCY9	115	genome.wustl.edu	37	16	4164273	4164273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001116.2	-1	reviewed	p.E391K	1.000	38	0%	57	19.3%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ANKS3	124401	genome.wustl.edu	37	16	4776998	4776998	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133450.2	-1	provisional	p.I117	1.000	38	0%	61	13.1%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PPL	5493	genome.wustl.edu	37	16	4934869	4934869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002705.4	-1	reviewed	p.E1263K	0.998	210	0.5%	216	26.4%	8	25%	probably_damaging(0.999)	tolerated(0.92)	deleterious(0.490)	NULL
PPL	5493	genome.wustl.edu	37	16	4935547	4935547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002705.4	-1	reviewed	p.R1037C	1.000	25	0%	41	24.4%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857127	9857127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000833.3	-1	reviewed	p.S1425L	0.911	145	0%	88	22.7%	0	-	benign(0.086)	tolerated(0.06)	neutral(0.329)	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	10031836	10031836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000833.3	-1	reviewed	p.V329	0.550	72	0%	106	38.7%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
ATF7IP2	80063	genome.wustl.edu	37	16	10524750	10524750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024997.2	+1	validated	p.F91L	0.000	181	0%	157	24.2%	0	-	benign(0.075)	deleterious(0)	neutral(0.450)	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11862325	11862325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014153.2	-1	provisional	p.E402D	0.994	144	0%	118	35.6%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
MKL2	57496	genome.wustl.edu	37	16	14234613	14234613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014048.3	+1	validated	p.K50N	1.000	154	0%	135	28.1%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PARN	5073	genome.wustl.edu	37	16	14674797	14674797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002582.2	-1	reviewed	p.S399Y	1.000	236	0%	169	36.1%	9	0%	benign(0.328)	deleterious(0.04)	neutral(0.452)	NULL
PARN	5073	genome.wustl.edu	37	16	14723470	14723470	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002582.2	-1	reviewed	p.I27	1.000	73	1.4%	58	31%	2	0%	-	-	-	HMMPfam_CAF1,superfamily_Ribonuclease H-like
NOMO1	23420	genome.wustl.edu	37	16	14947797	14947797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014287.3	+1	reviewed	p.P293S	1.000	365	0%	380	18.4%	10	10%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Carboxypeptidase regulatory domain
KIAA0430	9665	genome.wustl.edu	37	16	15715696	15715696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014647.3	-1	validated	p.D845Y	1.000	107	0%	70	32.9%	1	0%	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
KIAA0430	9665	genome.wustl.edu	37	16	15718739	15718739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014647.3	-1	validated	p.E719D	1.000	222	0%	166	32.5%	0	-	benign(0.005)	tolerated(0.36)	neutral(0.020)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15730093	15730093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014647.3	-1	validated	p.R84H	1.000	216	0%	215	34.9%	2	0%	probably_damaging(0.973)	tolerated(0.77)	neutral(0.416)	NULL
MYH11	4629	genome.wustl.edu	37	16	15844009	15844009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040114.1	-1	reviewed	p.N689D	1.000	17	0%	31	22.6%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH11	4629	genome.wustl.edu	37	16	15850312	15850312	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040114.1	-1	reviewed	p.T552	0.898	43	0%	47	10.6%	5	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH11	4629	genome.wustl.edu	37	16	15878554	15878554	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040114.1	-1	reviewed	e5+1	1.000	68	0%	56	32.1%	0	-	-	-	-	-
MYH11	4629	genome.wustl.edu	37	16	15878565	15878565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040114.1	-1	reviewed	p.S215Y	0.998	71	0%	58	19%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ABCC6	368	genome.wustl.edu	37	16	16302655	16302655	+	Nonsense_Mutation	SNP	C	C	A	rs72650697		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001171.5	-1	reviewed	p.E242*	0.898	191	0%	254	27.6%	0	-	-	-	-	NULL
NOMO2	283820	genome.wustl.edu	37	16	18532101	18532101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004060.1	-1	reviewed	p.F753L	1.000	618	0%	671	11.5%	23	21.7%	possibly_damaging(0.882)	tolerated(0.06)	deleterious(0.667)	NULL
RPS15A	6210	genome.wustl.edu	37	16	18794371	18794371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001019.4	-1	reviewed	p.R118Q	1.000	143	0%	169	30.2%	644	21.1%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_Ribosomal_S8,superfamily_Ribosomal protein S8
SMG1	23049	genome.wustl.edu	37	16	18823123	18823123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015092.4	-1	reviewed	p.R3623Q	1.000	709	0%	765	17.3%	8	25%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TMC7	79905	genome.wustl.edu	37	16	19027800	19027800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024847.3	+1	validated	p.L114I	0.366	32	0%	39	46.2%	0	-	benign(0.301)	tolerated(0.09)	neutral(0.389)	NULL
TMC5	79838	genome.wustl.edu	37	16	19451758	19451758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105248.1	+1	validated	p.R133Q	0.000	430	0.2%	626	31.2%	1	100%	benign(0.002)	tolerated(0.31)	neutral(0.027)	NULL
TMC5	79838	genome.wustl.edu	37	16	19509268	19509268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105248.1	+1	validated	p.E1001*	0.983	279	0%	345	22%	29	24.1%	-	-	-	NULL
CCP110	9738	genome.wustl.edu	37	16	19562553	19562553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014711.4	+1	validated	p.K979T	1.000	236	0%	208	25%	2	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
IQCK	124152	genome.wustl.edu	37	16	19746686	19746686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153208.1	+1	provisional	p.E130*	1.000	91	0%	126	31.7%	0	-	-	-	-	NULL
IQCK	124152	genome.wustl.edu	37	16	19775391	19775391	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153208.1	+1	provisional	p.E188*	1.000	66	0%	64	28.1%	1	0%	-	-	-	NULL
IQCK	124152	genome.wustl.edu	37	16	19838351	19838351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153208.1	+1	provisional	p.R232S	1.000	191	0%	188	25%	7	42.8%	-	-	-	NULL
UMOD	7369	genome.wustl.edu	37	16	20355444	20355444	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008389.1	-1	reviewed	p.E411	0.990	54	0%	48	33.3%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ACSM5	54988	genome.wustl.edu	37	16	20441037	20441037	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017888.2	+1	validated	p.G347*	1.000	170	0%	138	23.9%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM5	54988	genome.wustl.edu	37	16	20451726	20451726	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017888.2	+1	validated	p.R573*	0.489	33	0%	47	44.7%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
ACSM2A	123876	genome.wustl.edu	37	16	20476853	20476853	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010845.2	+1	validated	p.L64	0.000	47	0%	56	37.5%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
ACSM2B	348158	genome.wustl.edu	37	16	20576052	20576052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105069.1	-1	validated	p.E39G	0.479	53	0%	73	12.3%	0	-	benign(0.045)	deleterious(0.02)	neutral(0.386)	superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20796311	20796311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005622.3	+1	validated	p.K342T	1.000	194	0%	133	32.3%	2	100%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DNAH3	55567	genome.wustl.edu	37	16	20975196	20975196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.T3337M	0.000	292	0%	322	34.5%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	NULL
DNAH3	55567	genome.wustl.edu	37	16	20976052	20976052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.R3052S	1.000	234	0%	299	29.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21033379	21033379	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.F1897C	0.997	46	0%	60	31.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21045308	21045308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.D1729N	1.000	51	0%	29	37.9%	0	-	possibly_damaging(0.475)	tolerated(0.51)	neutral(0.166)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21069510	21069510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.R1274Q	0.999	69	0%	55	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21133296	21133296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017539.1	-1	provisional	p.E518D	1.000	177	0%	150	34.7%	0	-	benign(0.075)	tolerated(0.33)	neutral(0.029)	NULL
ZP2	7783	genome.wustl.edu	37	16	21210894	21210894	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003460.1	-1	reviewed	p.R642*	0.003	41	0%	58	24.1%	0	-	-	-	-	NULL
ZP2	7783	genome.wustl.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003460.1	-1	reviewed	p.E440K	1.000	206	0%	199	25.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ZP2	7783	genome.wustl.edu	37	16	21215510	21215510	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003460.1	-1	reviewed	p.T271	1.000	193	0%	186	23.7%	0	-	-	-	-	NULL
ZP2	7783	genome.wustl.edu	37	16	21218165	21218165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003460.1	-1	reviewed	p.F159L	0.051	262	0%	192	25.5%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
OTOA	146183	genome.wustl.edu	37	16	21698770	21698770	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144672.3	+1	reviewed	p.R146*	0.941	126	0%	137	20.4%	0	-	-	-	-	NULL
OTOA	146183	genome.wustl.edu	37	16	21728281	21728281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144672.3	+1	reviewed	p.F514L	0.997	249	0%	306	30.7%	0	-	benign(0.003)	tolerated(1)	-	NULL
OTOA	146183	genome.wustl.edu	37	16	21739665	21739665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144672.3	+1	reviewed	p.A707V	0.989	80	0%	136	22.1%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
OTOA	146183	genome.wustl.edu	37	16	21747639	21747639	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144672.3	+1	reviewed	p.E787*	0.877	162	0%	180	24.4%	0	-	-	-	-	NULL
ENSG00000179038	0	genome.wustl.edu	37	16	21812034	21812034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314442	-1	known	p.S43Y	1.000	395	0%	296	25%	0	-	-	-	-	HMMPfam_RRN3
UQCRC2	7385	genome.wustl.edu	37	16	21964747	21964747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003366.2	+1	validated	p.M1I	1.000	17	0%	22	27.3%	21	38%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
UQCRC2	7385	genome.wustl.edu	37	16	21968562	21968562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003366.2	+1	validated	p.Y14D	1.000	89	0%	91	28.6%	13	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
UQCRC2	7385	genome.wustl.edu	37	16	21974167	21974167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003366.2	+1	validated	p.K159Q	0.797	185	0%	179	29.1%	62	30.6%	benign(0.038)	tolerated(0.13)	neutral(0.255)	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16
PDZD9	255762	genome.wustl.edu	37	16	21999996	21999996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173806.3	-1	validated	p.D48N	0.992	191	0%	171	21.6%	0	-	benign(0.397)	tolerated(0.97)	neutral(0.128)	NULL
HS3ST2	9956	genome.wustl.edu	37	16	22926796	22926796	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006043.1	+1	reviewed	p.P339	0.471	686	0%	623	30.5%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
SCNN1G	6340	genome.wustl.edu	37	16	23200705	23200705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039.3	+1	reviewed	p.R111C	0.677	110	0%	94	33%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_ASC
SCNN1B	6338	genome.wustl.edu	37	16	23382771	23382771	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000336.2	+1	reviewed	p.I344	1.000	39	0%	44	18.2%	1	0%	-	-	-	HMMPfam_ASC
GGA2	23062	genome.wustl.edu	37	16	23504719	23504719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015044.4	-1	reviewed	p.R105C	1.000	99	0%	127	28.3%	12	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
PLK1	5347	genome.wustl.edu	37	16	23695284	23695284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005030.3	+1	provisional	p.F304V	1.000	437	0%	484	22.1%	32	40.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKCB	5579	genome.wustl.edu	37	16	24105583	24105583	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002738.6	+1	reviewed	p.G262	1.000	241	0%	192	30.2%	1	0%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKCB	5579	genome.wustl.edu	37	16	24196781	24196781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002738.6	+1	reviewed	p.A539T	1.000	75	0%	67	22.4%	1	0%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNG3	10368	genome.wustl.edu	37	16	24268218	24268218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006539.2	+1	reviewed	p.N48S	1.000	80	0%	68	23.5%	0	-	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	HMMPfam_PMP22_Claudin
CACNG3	10368	genome.wustl.edu	37	16	24372800	24372800	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006539.2	+1	reviewed	p.I188	1.000	387	0%	339	13%	0	-	-	-	-	HMMPfam_PMP22_Claudin
TNRC6A	27327	genome.wustl.edu	37	16	24834197	24834197	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000450465	+1	known	p.R683*	0.934	141	0%	136	21.3%	4	0%	-	-	-	superfamily_RNA-binding domain RBD
SLC5A11	115584	genome.wustl.edu	37	16	24922830	24922830	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052944.2	+1	provisional	p.I668	0.920	192	0%	172	26.2%	0	-	-	-	-	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24964277	24964277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006634.1	-1	validated	p.F313L	1.000	93	0%	86	20.9%	0	-	possibly_damaging(0.888)	tolerated(0.43)	neutral(0.361)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP17	55114	genome.wustl.edu	37	16	24990313	24990313	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006634.1	-1	validated	p.E23*	1.000	94	0%	113	19.5%	4	0%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
ZKSCAN2	342357	genome.wustl.edu	37	16	25251633	25251633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012981.4	-1	validated	p.F803C	0.998	173	0%	283	28.6%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288274	100288274	genome.wustl.edu	37	16	27221867	27221867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343456.1	-1	model	p.D72N	0.004	30	0%	12	41.7%	0	-	-	-	-	NULL
SH2B1	25970	genome.wustl.edu	37	16	28883581	28883581	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015503.2	+1	reviewed	p.F528	1.000	38	0%	42	14.3%	31	45.1%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RRN3P2	653390	genome.wustl.edu	37	16	29088001	29088001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000415221	+1	known	p.E38D	1.000	167	0%	237	29.1%	0	-	probably_damaging(0.953)	tolerated(0.07)	deleterious(0.716)	NULL
RRN3P2	653390	genome.wustl.edu	37	16	29108452	29108452	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000219758	+1	known	e10-1	1.000	194	0%	252	23.4%	0	-	-	-	-	-
RRN3P2	653390	genome.wustl.edu	37	16	29124381	29124381	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_003369.2	+1	validated	NULL	0.994	66	0%	69	30.4%	0	-	unknown(0)	deleterious(0.04)	-	-
MVP	9961	genome.wustl.edu	37	16	29853387	29853387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005115.3	+1	reviewed	p.E530K	1.000	19	0%	13	38.5%	335	36.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOC2A	8448	genome.wustl.edu	37	16	30018552	30018552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003586.2	-1	reviewed	p.R199H	1.000	21	4.8%	24	41.7%	0	-	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMSmart_C2,superfamily_C2_CaLB
ALDOA	226	genome.wustl.edu	37	16	30080985	30080985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000034.2	+1	reviewed	p.A264T	1.000	32	0%	30	36.7%	4562	44.2%	benign(0.329)	deleterious(0)	deleterious(0.547)	HMMPfam_Glycolytic,superfamily_SSF51569
GDPD3	79153	genome.wustl.edu	37	16	30122741	30122741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024307.2	-1	validated	p.F225L	0.970	66	0%	64	21.9%	0	-	benign(0.02)	tolerated(0.15)	neutral(0.242)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
ITGAL	3683	genome.wustl.edu	37	16	30506072	30506072	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002209.2	+1	reviewed	p.D468	0.379	32	0%	25	40%	4	0%	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGAL	3683	genome.wustl.edu	37	16	30532869	30532869	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002209.2	+1	reviewed	p.P1132	0.000	58	0%	102	27.5%	4	0%	-	-	-	NULL
ZNF646	9726	genome.wustl.edu	37	16	31089880	31089880	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014699.3	+1	validated	p.E745	0.029	53	0%	40	17.5%	1	100%	-	-	-	NULL
PRSS36	146547	genome.wustl.edu	37	16	31151684	31151684	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173502.3	-1	validated	p.L740	1.000	56	0%	73	11%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITGAM	3684	genome.wustl.edu	37	16	31335829	31335829	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000632.3	+1	reviewed	p.V704	0.001	35	0%	53	30.2%	1	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGAX	3687	genome.wustl.edu	37	16	31373186	31373186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000887.3	+1	reviewed	p.E348K	0.733	47	0%	70	24.3%	7	0%	benign(0.175)	deleterious(0.05)	neutral(0.361)	superfamily_SSF69318
ITGAX	3687	genome.wustl.edu	37	16	31388506	31388506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000887.3	+1	reviewed	p.E903D	0.984	129	0%	152	23.7%	18	0%	benign(0.044)	tolerated(0.36)	neutral(0.022)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGAD	3681	genome.wustl.edu	37	16	31435471	31435471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005353.2	+1	validated	p.D1070N	0.005	32	0%	43	32.6%	1	0%	benign(0.126)	tolerated(1)	neutral(0.011)	NULL
LOC401847	401847	genome.wustl.edu	37	16	33605616	33605616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001718104.2	+1	model	p.K95N	0.960	338	0%	383	32.6%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
LOC100130700	100130700	genome.wustl.edu	37	16	34739755	34739755	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078680.1	-1	model	NULL	0.001	78	0%	31	32.3%	0	-	-	-	-	-
VPS35	55737	genome.wustl.edu	37	16	46711253	46711253	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018206.4	-1	reviewed	p.E260*	1.000	123	0.8%	122	23.8%	1	0%	-	-	-	HMMPfam_Vps35
MYLK3	91807	genome.wustl.edu	37	16	46743504	46743504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182493.2	-1	validated	p.R783C	0.257	277	0%	297	26.9%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_Kinase_like
MYLK3	91807	genome.wustl.edu	37	16	46766461	46766461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182493.2	-1	validated	p.G374D	0.017	18	0%	21	23.8%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
DNAJA2	10294	genome.wustl.edu	37	16	46993268	46993268	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005880.3	-1	reviewed	p.C280G	0.999	236	0%	223	22%	13	23%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
DNAJA2	10294	genome.wustl.edu	37	16	47005304	47005304	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005880.3	-1	reviewed	p.R107*	1.000	159	0%	177	32.2%	28	25%	-	-	-	superfamily_Chaperone J-domain
ABCC12	94160	genome.wustl.edu	37	16	48175259	48175259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033226.2	-1	reviewed	p.R94Q	0.818	107	0%	109	22.9%	0	-	benign(0.015)	tolerated(0.55)	neutral(0.007)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48595226	48595226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153029.3	-1	validated	p.S443Y	0.010	143	0%	124	34.7%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48595307	48595307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153029.3	-1	validated	p.S416I	0.001	144	0%	132	35.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PAPD5	64282	genome.wustl.edu	37	16	50258833	50258833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040284.2	+1	validated	p.E290*	1.000	405	0%	427	24.1%	0	-	-	-	-	NULL
BRD7	29117	genome.wustl.edu	37	16	50353864	50353864	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013263.3	-1	validated	p.R612*	1.000	143	0%	107	29.9%	67	7.4%	-	-	-	NULL
BRD7	29117	genome.wustl.edu	37	16	50368632	50368632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013263.3	-1	validated	p.E293*	1.000	296	0%	360	21.7%	7	14.2%	-	-	-	NULL
CYLD	1540	genome.wustl.edu	37	16	50825508	50825508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015247.2	+1	reviewed	p.Q716H	0.995	93	0%	87	19.5%	0	-	benign(0.088)	deleterious(0)	neutral(0.451)	HMMPfam_UCH,superfamily_Cysteine proteinases
SALL1	6299	genome.wustl.edu	37	16	51171382	51171382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002968.2	-1	reviewed	p.L1206I	1.000	46	0%	44	18.2%	8	0%	possibly_damaging(0.882)	tolerated(0.11)	deleterious(0.616)	NULL
SALL1	6299	genome.wustl.edu	37	16	51173551	51173551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002968.2	-1	reviewed	p.S861L	0.995	157	0%	151	25.2%	3	33.3%	possibly_damaging(0.442)	tolerated(0.15)	neutral(0.385)	NULL
CHD9	80205	genome.wustl.edu	37	16	53191175	53191175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025134.4	+1	validated	p.H392N	1.000	53	0%	49	36.7%	0	-	possibly_damaging(0.459)	tolerated(0.11)	neutral(0.422)	NULL
CHD9	80205	genome.wustl.edu	37	16	53279629	53279629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025134.4	+1	validated	p.K1107N	1.000	133	0%	126	22.2%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_SNF2_N
RBL2	5934	genome.wustl.edu	37	16	53495699	53495699	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005611.3	+1	validated	p.E465*	1.000	165	0%	141	26.2%	0	-	-	-	-	HMMPfam_RB_A,superfamily_Cyclin_like
RBL2	5934	genome.wustl.edu	37	16	53504307	53504307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005611.3	+1	validated	p.E753A	1.000	213	0%	185	25.4%	11	63.6%	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53675262	53675262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015272.2	-1	reviewed	p.R937C	0.000	136	0%	144	25.7%	1	100%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
IRX3	79191	genome.wustl.edu	37	16	54319377	54319377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024336.2	-1	validated	p.T139I	1.000	44	0%	40	25%	9	55.5%	possibly_damaging(0.717)	deleterious(0)	deleterious(0.704)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
IRX6	79190	genome.wustl.edu	37	16	55362738	55362738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024335.2	+1	validated	p.T283M	0.355	27	0%	29	37.9%	0	-	benign(0.076)	tolerated(0.23)	neutral(0.047)	NULL
MMP2	4313	genome.wustl.edu	37	16	55530905	55530905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004530.4	+1	reviewed	p.P514S	1.000	95	0%	125	22.4%	131	14.5%	benign(0.004)	deleterious(0.03)	neutral(0.364)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
CAPNS2	84290	genome.wustl.edu	37	16	55600912	55600912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032330.1	+1	validated	p.R82W	1.000	196	0.5%	189	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF47473
AMFR	267	genome.wustl.edu	37	16	56396223	56396223	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000314566	-1	known	p.E262*	0.000	64	0%	46	21.7%	136	30.8%	-	-	-	NULL
NUDT21	11051	genome.wustl.edu	37	16	56485037	56485037	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007006.2	-1	reviewed	p.Q26	1.000	28	0%	29	17.2%	60	41.6%	-	-	-	NULL
CETP	1071	genome.wustl.edu	37	16	57004967	57004967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000078.2	+1	reviewed	p.F184L	0.163	109	0%	60	30%	0	-	probably_damaging(1)	tolerated(0.84)	deleterious(0.500)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
RSPRY1	89970	genome.wustl.edu	37	16	57261295	57261295	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133368.1	+1	provisional	p.Y401	0.992	55	0%	73	17.8%	10	10%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RSPRY1	89970	genome.wustl.edu	37	16	57265151	57265151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133368.1	+1	provisional	p.F483L	1.000	144	0%	151	29.1%	10	30%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
DOK4	55715	genome.wustl.edu	37	16	57507543	57507543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018110.3	-1	validated	p.E282K	0.990	70	0%	70	10%	25	12%	benign(0.39)	deleterious(0.04)	deleterious(0.474)	NULL
CCDC102A	92922	genome.wustl.edu	37	16	57550208	57550208	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033212.3	-1	validated	p.D472	0.812	27	0%	58	22.4%	13	46.1%	-	-	-	NULL
CDH8	1006	genome.wustl.edu	37	16	61687531	61687531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001796.2	-1	reviewed	p.E794A	1.000	187	0%	188	22.9%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
CDH8	1006	genome.wustl.edu	37	16	61689563	61689563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001796.2	-1	reviewed	p.L573I	1.000	151	0%	145	23.4%	0	-	benign(0.015)	tolerated(0.1)	neutral(0.287)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61851532	61851532	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001796.2	-1	reviewed	p.A376	0.072	144	0%	113	21.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH11	1009	genome.wustl.edu	37	16	64982588	64982588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000394156	-1	known	p.R666I	0.000	57	0%	64	10.9%	0	-	unknown(0)	-	-	NULL
PDP2	57546	genome.wustl.edu	37	16	66918405	66918405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020786.1	+1	validated	p.F73C	0.999	181	0%	202	33.7%	0	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
CDH16	1014	genome.wustl.edu	37	16	66944308	66944308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004062.2	-1	reviewed	p.Y674*	0.988	37	0%	39	25.6%	8	0%	-	-	-	NULL
ELMO3	79767	genome.wustl.edu	37	16	67236090	67236090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024712.3	+1	reviewed	p.E441D	1.000	69	0%	38	31.6%	30	16.6%	possibly_damaging(0.648)	deleterious(0.02)	deleterious(0.611)	HMMPfam_ELMO_CED12
FHOD1	29109	genome.wustl.edu	37	16	67264120	67264120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013241.2	-1	reviewed	p.F1021L	0.608	41	0%	34	44.1%	19	42.1%	benign(0.307)	tolerated(0.23)	neutral(0.137)	HMMSmart_FH2
SLC9A5	6553	genome.wustl.edu	37	16	67290489	67290489	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004594.2	+1	validated	p.I343	1.000	63	0%	79	30.4%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
CTCF	10664	genome.wustl.edu	37	16	67645102	67645102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006565.2	+1	reviewed	p.T123A	1.000	180	0%	194	24.2%	4	0%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
CTCF	10664	genome.wustl.edu	37	16	67645270	67645270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006565.2	+1	reviewed	p.E179*	1.000	165	0.6%	169	21.9%	7	0%	-	-	-	NULL
RLTPR	146206	genome.wustl.edu	37	16	67688681	67688681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013838.1	+1	provisional	p.R1195W	0.994	35	0%	34	29.4%	10	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TSNAXIP1	55815	genome.wustl.edu	37	16	67858664	67858664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018430.2	+1	validated	p.K166N	1.000	34	0%	33	24.2%	0	-	possibly_damaging(0.546)	deleterious(0.02)	deleterious(0.569)	NULL
DPEP3	64180	genome.wustl.edu	37	16	68011693	68011693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022357.3	-1	reviewed	p.D291Y	1.000	25	0%	32	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases
DPEP2	64174	genome.wustl.edu	37	16	68021654	68021654	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022355.2	-1	validated	p.E406*	0.000	112	0%	108	33.3%	0	-	-	-	-	superfamily_Metallo-dependent hydrolases
DUS2L	54920	genome.wustl.edu	37	16	68112866	68112866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017803.3	+1	provisional	p.E487K	0.056	42	0%	51	23.5%	8	37.5%	benign(0.007)	tolerated(0.12)	neutral(0.261)	NULL
PRMT7	54496	genome.wustl.edu	37	16	68358585	68358585	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019023.2	+1	validated	e3-1	1.000	85	0%	79	29.1%	0	-	-	-	-	-
ZFP90	146198	genome.wustl.edu	37	16	68597334	68597334	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133458.2	+1	provisional	p.K215T	0.997	356	0.3%	308	28.2%	1	0%	benign(0.004)	tolerated(0.07)	neutral(0.319)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP90	146198	genome.wustl.edu	37	16	68598023	68598023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133458.2	+1	provisional	p.T445A	0.626	281	0%	268	26.5%	0	-	possibly_damaging(0.935)	deleterious(0.04)	deleterious(0.730)	superfamily_C2H2 and C2HC zinc fingers
ZFP90	146198	genome.wustl.edu	37	16	68598492	68598492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133458.2	+1	provisional	p.R601K	1.000	310	0%	255	43.1%	0	-	possibly_damaging(0.815)	tolerated(0.23)	neutral(0.349)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDH3	1001	genome.wustl.edu	37	16	68712098	68712098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001793.4	+1	reviewed	p.R103Q	0.998	97	0%	109	23.9%	7	14.2%	probably_damaging(0.994)	tolerated(0.38)	deleterious(0.470)	NULL
CDH1	999	genome.wustl.edu	37	16	68842745	68842745	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004360.3	+1	reviewed	p.T227	0.001	97	0%	121	30.6%	13	30.7%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TMCO7	79613	genome.wustl.edu	37	16	68894337	68894337	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024562.1	+1	validated	p.I215	1.000	129	0%	213	19.2%	1	0%	-	-	-	NULL
TMCO7	79613	genome.wustl.edu	37	16	68894414	68894414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024562.1	+1	validated	p.T241K	0.000	115	0%	124	38.7%	1	0%	benign(0)	tolerated(0.98)	-	NULL
PDXDC2P	283970	genome.wustl.edu	37	16	70048061	70048061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000325845	-1	known	p.E383*	1.000	57	0%	69	27.5%	2	0%	-	-	-	superfamily_PLP-dependent transferases
PDPR	55066	genome.wustl.edu	37	16	70162898	70162898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017990.3	+1	validated	p.K160N	1.000	361	0%	455	14.7%	0	-	benign(0.081)	tolerated(0.11)	neutral(0.278)	HMMPfam_DAO,superfamily_SSF51905
AARS	16	genome.wustl.edu	37	16	70310908	70310908	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001605.2	-1	reviewed	p.F98	1.000	163	0%	173	31.2%	16	18.7%	-	-	-	HMMPfam_tRNA-synt_2c,superfamily_SSF55681
COG4	25839	genome.wustl.edu	37	16	70534993	70534993	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015386.2	-1	validated	p.E355*	1.000	84	0%	76	27.6%	8	37.5%	-	-	-	HMMPfam_COG4,HMMSmart_SM00762
VAC14	55697	genome.wustl.edu	37	16	70817441	70817441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018052.3	-1	validated	p.S204L	0.999	49	0%	33	30.3%	4	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM-type_fold
HYDIN	54768	genome.wustl.edu	37	16	70852326	70852326	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.P4858	0.435	26	0%	22	18.2%	4	100%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70866887	70866887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.S4587Y	0.606	107	0%	83	9.6%	0	-	benign(0.091)	tolerated(0.06)	neutral(0.329)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70894047	70894047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.I4017S	0.000	241	0%	202	30.2%	0	-	benign(0)	tolerated(1)	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70913257	70913257	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.L3499	1.000	50	0%	38	18.4%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70913595	70913595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.S3426F	0.998	102	0%	108	13%	1	0%	benign(0.091)	deleterious(0.01)	neutral(0.412)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71009055	71009055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.R1585C	0.000	243	0%	266	19.9%	0	-	benign(0.141)	tolerated(0.1)	neutral(0.298)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71015319	71015319	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.C1494	0.996	143	0%	132	23.5%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	71019120	71019120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032821.2	-1	validated	p.L1433I	0.000	51	0%	55	20%	0	-	possibly_damaging(0.806)	tolerated(0.41)	neutral(0.319)	NULL
ZNF23	7571	genome.wustl.edu	37	16	71482142	71482142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145911.1	-1	provisional	p.G596C	1.000	256	0%	252	27.8%	4	50%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71483711	71483711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145911.1	-1	provisional	p.D73N	0.007	404	0%	358	24%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
TAT	6898	genome.wustl.edu	37	16	71604689	71604689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000353.2	-1	reviewed	p.D269N	0.928	115	0%	91	29.7%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
PHLPP2	23035	genome.wustl.edu	37	16	71692587	71692587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015020.2	-1	validated	p.F706S	1.000	233	0%	288	20.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00364,superfamily_L domain-like
AP1G1	164	genome.wustl.edu	37	16	71767052	71767052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001030007.1	-1	reviewed	p.R796Q	1.000	47	0%	58	34.5%	16	31.2%	unknown(0)	tolerated(0.1)	-	HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain
AP1G1	164	genome.wustl.edu	37	16	71823246	71823246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001030007.1	-1	reviewed	p.R46Q	1.000	59	0%	56	32.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
TXNL4B	54957	genome.wustl.edu	37	16	72122918	72122918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142317.1	-1	validated	p.F84L	1.000	166	0%	199	16.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIM1,superfamily_Thiordxn-like_fd
ZFHX3	463	genome.wustl.edu	37	16	72992268	72992268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006885.3	-1	reviewed	p.E593K	1.000	88	0%	66	33.3%	4	0%	unknown(0)	-	-	NULL
PSMD7	5713	genome.wustl.edu	37	16	74334091	74334091	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002811.3	+1	reviewed	p.S51	1.000	71	0%	55	27.3%	24	20.8%	-	-	-	HMMPfam_Mov34,HMMSmart_JAB_MPN
MLKL	197259	genome.wustl.edu	37	16	74729229	74729229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152649.2	-1	validated	p.E143K	0.980	209	0%	182	17%	2	0%	probably_damaging(0.995)	tolerated(0.31)	deleterious(0.485)	NULL
ZFP1	162239	genome.wustl.edu	37	16	75203871	75203871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153688.2	+1	validated	p.R288I	1.000	79	0%	129	29.5%	3	100%	probably_damaging(0.961)	tolerated(0.05)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KARS	3735	genome.wustl.edu	37	16	75669973	75669973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130089.1	-1	reviewed	p.F197C	1.000	60	0%	71	21.1%	24	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
CNTNAP4	85445	genome.wustl.edu	37	16	76311629	76311629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000307431	+1	known	p.E23K	0.005	39	0%	42	47.6%	0	-	benign(0.074)	tolerated(0.56)	neutral(0.011)	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76483713	76483713	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033401.3	+1	reviewed	p.S343*	0.996	44	0%	27	37%	0	-	-	-	-	NULL
ADAMTS18	170692	genome.wustl.edu	37	16	77331221	77331221	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199355.2	-1	reviewed	p.E922	0.999	197	0%	151	24.5%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NUDT7	283927	genome.wustl.edu	37	16	77775565	77775565	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105663.1	+1	reviewed	p.F145	0.937	142	0%	159	28.3%	11	27.2%	-	-	-	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
CLEC3A	10143	genome.wustl.edu	37	16	78056600	78056600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005752.3	+1	validated	p.R26I	0.852	139	0%	161	29.8%	0	-	possibly_damaging(0.613)	deleterious(0.02)	deleterious(0.596)	NULL
CLEC3A	10143	genome.wustl.edu	37	16	78064421	78064421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005752.3	+1	validated	p.E93*	1.000	157	0%	150	36.7%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
WWOX	51741	genome.wustl.edu	37	16	78466392	78466392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016373.1	+1	reviewed	p.D267Y	1.000	199	0%	132	32.6%	6	50%	benign(0.127)	deleterious(0)	neutral(0.455)	superfamily_NAD(P)-binding Rossmann-fold domains
ATMIN	23300	genome.wustl.edu	37	16	81075941	81075941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015251.2	+1	validated	p.S173L	0.939	138	0%	206	27.2%	16	18.7%	probably_damaging(0.975)	tolerated(0.28)	neutral(0.449)	HMMSmart_SM00355
PKD1L2	114780	genome.wustl.edu	37	16	81145769	81145769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052892.3	-1	reviewed	p.R2328C	0.950	141	0%	211	28.9%	0	-	unknown(0)	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81253836	81253836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001076780.1	-1	reviewed	p.R47H	0.012	148	0%	170	21.8%	0	-	benign(0.034)	tolerated(0.29)	neutral(0.031)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLCG2	5336	genome.wustl.edu	37	16	81934316	81934316	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002661.2	+1	validated	p.T431	0.000	29	0%	30	30%	2	0%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
HSD17B2	3294	genome.wustl.edu	37	16	82069255	82069255	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002153.2	+1	validated	p.E76*	0.701	153	0%	166	31.9%	0	-	-	-	-	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84189296	84189296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178452.4	+1	reviewed	p.S228L	1.000	172	0%	249	35.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Outer arm dynein light chain 1
ZC3H18	124245	genome.wustl.edu	37	16	88688691	88688691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144604.3	+1	validated	p.R521Q	1.000	18	0%	12	50%	17	70.5%	unknown(0)	deleterious(0.04)	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89349410	89349410	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013275.4	-1	validated	p.E1180	0.000	204	0%	212	19.8%	1	0%	-	-	-	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89349799	89349799	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013275.4	-1	validated	p.E1051*	1.000	314	0%	288	23.6%	0	-	-	-	-	superfamily_Ankyrin repeat
FANCA	2175	genome.wustl.edu	37	16	89874745	89874745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000135.2	-1	reviewed	p.L185I	0.969	233	0%	319	19.7%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1577960	1577960	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006445.3	-1	reviewed	p.T1025	0.349	255	0%	337	24%	9	11.1%	-	-	-	HMMPfam_RRM_4
SERPINF2	5345	genome.wustl.edu	37	17	1656056	1656056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000934.3	+1	reviewed	p.M345I	1.000	12	0%	18	38.9%	17	41.1%	benign(0.235)	tolerated(0.33)	neutral(0.048)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SMYD4	114826	genome.wustl.edu	37	17	1707951	1707951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052928.2	-1	validated	p.S113L	1.000	78	0%	60	31.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_TPR-like
SMG6	23293	genome.wustl.edu	37	17	2203416	2203416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017575.4	-1	validated	p.A211T	0.005	249	0%	260	21.5%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
RAP1GAP2	23108	genome.wustl.edu	37	17	2861061	2861061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015085.4	+1	reviewed	p.E58D	1.000	42	0%	66	13.6%	0	-	possibly_damaging(0.601)	tolerated(0.78)	neutral(0.209)	NULL
OR1G1	8390	genome.wustl.edu	37	17	3029950	3029950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003555.1	-1	provisional	p.S299Y	0.000	239	0%	175	26.3%	0	-	possibly_damaging(0.463)	deleterious(0)	deleterious(0.597)	superfamily_SSF81321
OR1A2	26189	genome.wustl.edu	37	17	3101316	3101316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012352.1	+1	provisional	p.F168L	1.000	292	0%	312	33.7%	0	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMPfam_7tm_1,superfamily_SSF81321
OR1A2	26189	genome.wustl.edu	37	17	3101684	3101684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012352.1	+1	provisional	p.R291I	1.000	275	0%	278	26.3%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF81321
OR1A1	8383	genome.wustl.edu	37	17	3119369	3119369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014565.2	+1	validated	p.G152E	0.002	274	0%	287	32.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_SSF81321
OR1E1	8387	genome.wustl.edu	37	17	3301556	3301556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003553.2	-1	validated	p.R50Q	0.000	386	0%	486	29.6%	0	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
SPATA22	84690	genome.wustl.edu	37	17	3343618	3343618	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032598.4	-1	validated	p.P305	1.000	199	0%	243	26.7%	0	-	-	-	-	NULL
TRPV3	162514	genome.wustl.edu	37	17	3433498	3433498	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145068.2	-1	reviewed	e8-1	1.000	44	0%	56	25%	0	-	-	-	-	-
TRPV3	162514	genome.wustl.edu	37	17	3445840	3445840	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145068.2	-1	reviewed	p.E207*	0.934	42	0%	66	10.6%	0	-	-	-	-	superfamily_Ankyrin repeat
CTNS	1497	genome.wustl.edu	37	17	3563594	3563594	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031681.2	+1	reviewed	p.F345	1.000	30	0%	33	18.2%	4	75%	-	-	-	NULL
C17orf85	55421	genome.wustl.edu	37	17	3724601	3724601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114118.1	-1	provisional	p.K314N	1.000	111	0%	134	34.3%	3	66.6%	benign(0.189)	deleterious(0)	neutral(0.462)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3968049	3968049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015113.3	-1	validated	p.E1442K	0.957	117	0%	96	28.1%	1	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4120394	4120394	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016376.3	-1	validated	p.T114	0.920	71	0%	73	27.4%	0	-	-	-	-	HMMSmart_BTB,superfamily_ANK,HMMPfam_BTB
ALOX15	246	genome.wustl.edu	37	17	4536716	4536716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001140.3	-1	validated	p.F414S	0.354	199	0%	348	31.9%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
GP1BA	2811	genome.wustl.edu	37	17	4836490	4836490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000173.5	+1	reviewed	p.E197D	0.007	161	0%	238	13%	1	0%	benign(0.006)	tolerated(0.34)	neutral(0.023)	superfamily_SSF52058
ZFP3	124961	genome.wustl.edu	37	17	4995365	4995365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153018.2	+1	validated	p.R189I	1.000	215	0.5%	182	34.6%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF232	7775	genome.wustl.edu	37	17	5009376	5009376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014519.2	-1	validated	p.E360K	0.001	96	0%	114	32.5%	4	25%	unknown(0)	tolerated(0.65)	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
USP6	9098	genome.wustl.edu	37	17	5073925	5073925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004505.2	+1	validated	p.K1223N	1.000	91	0%	77	28.6%	0	-	benign(0.042)	tolerated(0.07)	neutral(0.322)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF594	84622	genome.wustl.edu	37	17	5087181	5087181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032530.1	-1	validated	p.N124T	0.990	170	0%	173	26.6%	0	-	benign(0.073)	deleterious(0.04)	neutral(0.354)	superfamily_SSF57667
RABEP1	9135	genome.wustl.edu	37	17	5238602	5238602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004703.4	+1	validated	p.G164D	0.994	130	0%	88	30.7%	3	0%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Rabaptin
RABEP1	9135	genome.wustl.edu	37	17	5281510	5281510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004703.4	+1	validated	p.K752E	0.998	140	0%	143	33.6%	1	100%	benign(0.053)	tolerated(0.34)	neutral(0.026)	HMMPfam_Rab5-bind
DERL2	51009	genome.wustl.edu	37	17	5384696	5384696	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016041.3	-1	provisional	p.R83*	1.000	146	0%	171	22.2%	17	11.7%	-	-	-	HMMPfam_DER1
NLRP1	22861	genome.wustl.edu	37	17	5421161	5421161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033004.3	-1	reviewed	p.S1321L	1.000	203	0%	159	18.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP1	22861	genome.wustl.edu	37	17	5424907	5424907	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033004.3	-1	reviewed	p.R1240	0.000	77	0%	220	12.7%	3	0%	-	-	-	NULL
ALOX12	239	genome.wustl.edu	37	17	6902112	6902112	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000697.2	+1	validated	p.F166	1.000	176	0%	268	10.1%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
BCL6B	255877	genome.wustl.edu	37	17	6927918	6927918	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181844.3	+1	validated	p.I200	0.992	61	0%	58	17.2%	0	-	-	-	-	NULL
PHF23	79142	genome.wustl.edu	37	17	7139698	7139698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024297.2	-1	validated	p.R183Q	1.000	39	0%	58	24.1%	12	25%	possibly_damaging(0.772)	deleterious(0.03)	deleterious(0.651)	NULL
NEURL4	84461	genome.wustl.edu	37	17	7219510	7219510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032442.2	-1	validated	p.E1541K	0.998	36	0%	55	23.6%	21	57.1%	possibly_damaging(0.892)	deleterious(0.05)	deleterious(0.697)	NULL
FGF11	2256	genome.wustl.edu	37	17	7344857	7344857	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004112.2	+1	reviewed	p.P87	0.035	38	0%	42	33.3%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
EFNB3	1949	genome.wustl.edu	37	17	7611805	7611805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001406.3	+1	reviewed	p.C156	1.000	14	0%	28	28.6%	0	-	-	-	-	HMMPfam_Ephrin,superfamily_Cupredoxins
DNAH2	146754	genome.wustl.edu	37	17	7626947	7626947	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.E56	0.793	71	0%	70	25.7%	0	-	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7646318	7646318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.V588F	0.068	78	0%	122	11.5%	0	-	possibly_damaging(0.6)	tolerated(0.7)	neutral(0.209)	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7646565	7646565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000082259	+1	known	p.S752Y	0.000	41	0%	80	27.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7668730	7668730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.L1120F	0.064	155	0%	173	32.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Spectrin repeat
DNAH2	146754	genome.wustl.edu	37	17	7678131	7678131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.S1519Y	1.000	93	0%	94	29.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7690246	7690246	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.F2166	1.000	79	0%	79	30.4%	0	-	-	-	-	HMMPfam_AAA_5
DNAH2	146754	genome.wustl.edu	37	17	7708333	7708333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.A3081S	1.000	107	0%	94	18.1%	0	-	possibly_damaging(0.833)	tolerated(0.09)	deleterious(0.614)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7735060	7735060	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.I4231	0.994	23	0%	40	22.5%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH2	146754	genome.wustl.edu	37	17	7736532	7736532	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020877.2	+1	validated	p.S4374	0.785	28	0%	26	34.6%	0	-	-	-	-	HMMPfam_Dynein_heavy
ALOX12B	242	genome.wustl.edu	37	17	7976206	7976206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001139.2	-1	reviewed	p.E663D	0.452	47	0%	54	22.2%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
PER1	5187	genome.wustl.edu	37	17	8052892	8052892	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002616.2	-1	reviewed	p.D247	0.956	62	0%	65	24.6%	5	0%	-	-	-	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
AURKB	9212	genome.wustl.edu	37	17	8110514	8110514	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004217.2	-1	validated	p.I126	0.998	53	0%	69	29%	49	20.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KRBA2	124751	genome.wustl.edu	37	17	8273383	8273383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213597.2	-1	provisional	p.R183Q	0.012	323	0%	322	31.7%	2	0%	possibly_damaging(0.901)	tolerated(0.15)	deleterious(0.598)	NULL
MYH10	4628	genome.wustl.edu	37	17	8526242	8526242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005964.1	-1	validated	p.R108H	1.000	289	0%	234	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPDYE4	388333	genome.wustl.edu	37	17	8660703	8660703	+	Missense_Mutation	SNP	G	G	A	rs149790109	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128076.1	-1	provisional	p.R73C	0.000	36	0%	85	20%	0	-	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	NULL
USP43	124739	genome.wustl.edu	37	17	9631454	9631454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153210.3	+1	validated	p.R840Q	0.999	26	0%	31	25.8%	39	20.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GLP2R	9340	genome.wustl.edu	37	17	9774139	9774139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004246.1	+1	reviewed	p.D378Y	1.000	203	0%	147	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
GAS7	8522	genome.wustl.edu	37	17	9843493	9843493	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_201433.1	-1	reviewed	p.A252	0.956	269	0%	316	33.5%	2	0%	-	-	-	HMMPfam_FCH,HMMSmart_SM00055
MYH13	8735	genome.wustl.edu	37	17	10216027	10216027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003802.2	-1	validated	p.T1410M	1.000	41	0%	31	35.5%	0	-	benign(0.038)	deleterious(0.03)	neutral(0.366)	HMMPfam_Myosin_tail_1
MYH13	8735	genome.wustl.edu	37	17	10223760	10223760	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003802.2	-1	validated	p.A1055	0.909	122	0%	119	20.2%	1	0%	-	-	-	superfamily_Prefoldin
MYH13	8735	genome.wustl.edu	37	17	10267830	10267830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003802.2	-1	validated	p.E6D	0.989	53	0%	51	23.5%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
MYH8	4626	genome.wustl.edu	37	17	10304272	10304272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002472.2	-1	reviewed	p.E1087*	1.000	140	0.7%	118	30.5%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10304475	10304475	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002472.2	-1	reviewed	p.R1048*	1.000	221	0%	190	28.4%	0	-	-	-	-	NULL
MYH8	4626	genome.wustl.edu	37	17	10304929	10304929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002472.2	-1	reviewed	p.K954N	1.000	583	0%	481	29.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MYH4	4622	genome.wustl.edu	37	17	10359218	10359218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017533.2	-1	validated	p.E657K	1.000	223	0%	222	19.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10360991	10360991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017533.2	-1	validated	p.D548A	1.000	130	0.8%	145	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10363584	10363584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017533.2	-1	validated	p.S401Y	1.000	173	0%	167	29.3%	0	-	benign(0.021)	deleterious(0.02)	neutral(0.384)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10426982	10426982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100112.1	-1	reviewed	p.A1768V	1.000	222	0%	186	29%	0	-	benign(0.077)	tolerated(0.09)	neutral(0.302)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10429015	10429015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100112.1	-1	reviewed	p.D1456N	1.000	187	0%	145	27.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10447242	10447242	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100112.1	-1	reviewed	p.E209*	0.967	132	0%	166	37.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
DNAH9	1770	genome.wustl.edu	37	17	11556132	11556132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001372.3	+1	reviewed	p.R803I	1.000	254	0%	165	38.8%	0	-	possibly_damaging(0.951)	tolerated(0.1)	deleterious(0.680)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11583101	11583101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001372.3	+1	reviewed	p.K1127N	0.000	141	0.7%	183	29.5%	0	-	benign(0.076)	tolerated(0.45)	neutral(0.018)	superfamily_Spectrin repeat
DNAH9	1770	genome.wustl.edu	37	17	11645569	11645569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001372.3	+1	reviewed	p.Q2017P	0.983	238	0%	199	23.1%	0	-	benign(0.164)	deleterious(0)	neutral(0.460)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11783453	11783453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001372.3	+1	reviewed	p.L3513I	0.703	157	0%	153	36.6%	0	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11784537	11784537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001372.3	+1	reviewed	p.I3538S	1.000	182	0%	187	31.6%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
MYOCD	93649	genome.wustl.edu	37	17	12655809	12655809	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153604.2	+1	reviewed	p.R402*	0.994	74	0%	134	29.9%	0	-	-	-	-	HMMPfam_SAP,HMMSmart_SM00513,superfamily_SAP domain
ENSG00000205325	0	genome.wustl.edu	37	17	14683311	14683311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000379640	-1	known	p.G59D	0.000	104	0%	99	34.3%	0	-	unknown(0)	-	-	NULL
LOC732391	732391	genome.wustl.edu	37	17	15469518	15469518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001722159.1	-1	model	p.E21K	0.000	128	0%	131	35.1%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
CDRT1	374286	genome.wustl.edu	37	17	15498116	15498116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006382.3	-1	provisional	p.A598V	1.000	76	0%	74	21.6%	0	-	probably_damaging(0.99)	tolerated(0.9)	neutral(0.442)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZNF286A	57335	genome.wustl.edu	37	17	15620186	15620186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130842.1	+1	validated	p.K383T	0.925	115	0%	168	19%	1	0%	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF286A	57335	genome.wustl.edu	37	17	15620187	15620187	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130842.1	+1	validated	p.K383	0.919	114	0%	168	20.2%	1	100%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TBC1D26	353149	genome.wustl.edu	37	17	15642057	15642057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178571.4	+1	validated	p.R137M	0.000	137	0%	152	17.8%	0	-	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
NCOR1	9611	genome.wustl.edu	37	17	15965477	15965477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006311.2	-1	reviewed	p.G1777*	1.000	262	0%	315	14.9%	9	0%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15965583	15965583	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006311.2	-1	reviewed	p.G1741	0.995	159	0%	181	29.8%	16	81.2%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15978861	15978861	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006311.2	-1	reviewed	p.I1219	0.880	174	0%	185	32.4%	1	100%	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16612268	16612268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014695.1	+1	provisional	p.K299N	1.000	542	0%	347	17.6%	0	-	possibly_damaging(0.931)	deleterious(0.02)	deleterious(0.760)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16612848	16612848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014695.1	+1	provisional	p.E493*	0.927	482	0%	370	29.2%	5	0%	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16638556	16638556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014695.1	+1	provisional	p.D991Y	0.008	128	0%	128	8.6%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16664886	16664886	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014695.1	+1	provisional	p.L1174	0.995	124	0%	124	9.7%	0	-	-	-	-	NULL
TNFRSF13B	23495	genome.wustl.edu	37	17	16842951	16842951	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012452.2	-1	reviewed	p.R264	0.000	17	0%	25	40%	0	-	-	-	-	NULL
COPS3	8533	genome.wustl.edu	37	17	17158199	17158199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003653.2	-1	reviewed	p.E333K	1.000	143	0%	178	33.1%	61	36%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
COPS3	8533	genome.wustl.edu	37	17	17165365	17165365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003653.2	-1	reviewed	p.K226T	1.000	104	0%	75	32%	19	57.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COPS3	8533	genome.wustl.edu	37	17	17179364	17179364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003653.2	-1	reviewed	p.G57D	1.000	207	0%	279	29%	28	67.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAI1	10743	genome.wustl.edu	37	17	17701173	17701173	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030665.3	+1	reviewed	p.S1637	0.761	47	0%	58	10.3%	34	5.8%	-	-	-	NULL
TOP3A	7156	genome.wustl.edu	37	17	18181298	18181298	+	Missense_Mutation	SNP	C	C	T	rs144665877	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004618.3	-1	reviewed	p.G840R	0.000	46	0%	49	24.5%	4	0%	possibly_damaging(0.502)	tolerated(0.26)	neutral(0.202)	HMMPfam_zf-GRF
SHMT1	6470	genome.wustl.edu	37	17	18232204	18232204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004169.3	-1	reviewed	p.D438N	0.002	28	0%	33	18.2%	29	31%	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_PLP-dependent transferases
LOC645139	645139	genome.wustl.edu	37	17	18554445	18554445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_928169.3	+1	model	p.E353*	1.000	99	0%	101	27.7%	21	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
ZNF286B	729288	genome.wustl.edu	37	17	18565679	18565679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145045.1	-1	validated	p.E380D	1.000	107	0%	133	20.3%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF286B	729288	genome.wustl.edu	37	17	18566096	18566096	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145045.1	-1	validated	p.K241	1.000	110	0%	141	27%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ENSG00000248683	0	genome.wustl.edu	37	17	18574862	18574862	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000507743	+1	novel	NULL	1.000	136	0%	122	18.9%	2	0%	-	-	-	-
FBXW10	10517	genome.wustl.edu	37	17	18661636	18661636	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031456.3	+1	validated	p.V417	1.000	346	0.3%	361	18.6%	0	-	-	-	-	superfamily_WD40 repeat-like
FBXW10	10517	genome.wustl.edu	37	17	18673250	18673250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031456.3	+1	validated	p.D620N	0.916	217	0%	254	28.7%	0	-	benign(0.143)	tolerated(0.49)	neutral(0.023)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXW10	10517	genome.wustl.edu	37	17	18675854	18675854	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031456.3	+1	validated	p.L712	0.000	291	0%	337	27.9%	0	-	-	-	-	NULL
FAM18B1	51030	genome.wustl.edu	37	17	18694260	18694260	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016078.4	+1	predicted	p.I49	0.772	519	0%	550	22.5%	9	0%	-	-	-	HMMPfam_DUF846
RNF112	7732	genome.wustl.edu	37	17	19316902	19316902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007148.4	+1	reviewed	p.L245M	1.000	22	0%	16	25%	1	0%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
ALDH3A1	218	genome.wustl.edu	37	17	19646609	19646609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000333946	-1	known	p.S27*	1.000	62	0%	32	18.8%	19	31.5%	-	-	-	NULL
ULK2	9706	genome.wustl.edu	37	17	19720126	19720126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142610.1	-1	reviewed	p.K344N	1.000	278	0%	248	16.5%	2	50%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	superfamily_Protein kinase-like (PK-like)
AKAP10	11216	genome.wustl.edu	37	17	19827766	19827766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007202.2	-1	reviewed	p.A569V	1.000	75	0%	93	33.3%	1	0%	possibly_damaging(0.452)	tolerated(0.16)	neutral(0.207)	NULL
SPECC1	92521	genome.wustl.edu	37	17	20108622	20108622	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033553.1	+1	validated	p.T420	0.000	184	0%	190	21.6%	5	60%	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20243609	20243609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000425519	+1	known	p.E469*	0.998	280	0%	230	13%	0	-	-	-	-	NULL
TMEM11	8834	genome.wustl.edu	37	17	21101654	21101654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003876.2	-1	validated	p.E188K	1.000	75	0%	49	10.2%	133	10.5%	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
LOC440419	440419	genome.wustl.edu	37	17	25758368	25758368	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_040504.2	+1	model	NULL	0.010	24	0%	30	30%	0	-	-	-	-	-
NOS2	4843	genome.wustl.edu	37	17	26101415	26101415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000625.4	-1	reviewed	p.Q448H	1.000	30	0%	26	30.8%	0	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
ENSG00000207844	0	genome.wustl.edu	37	17	26603556	26603556	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385109	-1	novel	NULL	0.796	29	0%	38	34.2%	0	-	-	-	-	-
POLDIP2	26073	genome.wustl.edu	37	17	26679959	26679959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015584.3	-1	reviewed	p.L200I	1.000	19	0%	17	35.3%	26	34.6%	-	-	-	NULL
SARM1	23098	genome.wustl.edu	37	17	26711462	26711462	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015077.2	+1	validated	p.R392C	0.976	13	0%	39	28.2%	1	0%	-	-	-	NULL
UNC119	9094	genome.wustl.edu	37	17	26874826	26874826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005148.3	-1	reviewed	p.R160H	1.000	77	0%	99	38.4%	26	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GMP_PDE_delta,superfamily_E set domains
ENSG00000167524	0	genome.wustl.edu	37	17	26939298	26939298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000301037	-1	known	p.E212K	1.000	161	0%	197	26.9%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIAA0100	9703	genome.wustl.edu	37	17	26961567	26961567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014680.2	-1	validated	p.R1013Q	1.000	108	0%	149	33.6%	6	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27010367	27010367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003170.3	+1	validated	p.L654I	1.000	109	0%	99	19.2%	0	-	probably_damaging(0.964)	tolerated(0.29)	neutral(0.435)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27016529	27016529	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003170.3	+1	validated	p.R1098*	0.987	119	0%	82	11%	5	20%	-	-	-	NULL
ERAL1	26284	genome.wustl.edu	37	17	27183340	27183340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000412138	+1	known	p.Y20C	0.994	250	0%	331	25.4%	32	25%	unknown(0)	-	-	NULL
PHF12	57649	genome.wustl.edu	37	17	27239661	27239661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033561.1	-1	validated	p.R643I	1.000	45	0%	41	26.8%	25	64%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
PHF12	57649	genome.wustl.edu	37	17	27244316	27244316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033561.1	-1	validated	p.R374I	1.000	99	0%	92	23.9%	3	66.6%	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	NULL
NUFIP2	57532	genome.wustl.edu	37	17	27620964	27620964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020772.2	-1	validated	p.F38L	1.000	39	0%	43	25.6%	8	0%	unknown(0)	tolerated(0.39)	-	NULL
GIT1	28964	genome.wustl.edu	37	17	27901774	27901774	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001085454.1	-1	validated	p.I753	0.996	9	0.000	14	0.357	71	28.1%	-	-	-	NULL
SSH2	85464	genome.wustl.edu	37	17	27959366	27959366	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033389.2	-1	reviewed	p.S922*	0.002	253	0%	369	27.1%	1	0%	-	-	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28414080	28414080	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198529.3	+1	validated	e19-1	0.998	226	0%	178	24.7%	0	-	-	-	-	-
SLC6A4	6532	genome.wustl.edu	37	17	28545857	28545857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001045.4	-1	reviewed	p.G146*	1.000	262	0%	248	20.2%	0	-	-	-	-	HMMPfam_SNF
TMIGD1	388364	genome.wustl.edu	37	17	28645840	28645840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206832.1	-1	provisional	p.K244N	0.019	180	0%	127	34.6%	0	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
TMIGD1	388364	genome.wustl.edu	37	17	28651988	28651988	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_206832.1	-1	provisional	p.L162	0.030	295	0%	277	28.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ATAD5	79915	genome.wustl.edu	37	17	29162437	29162437	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024857.3	+1	provisional	p.I446	0.307	166	0%	200	33%	0	-	-	-	-	NULL
TEFM	79736	genome.wustl.edu	37	17	29226354	29226354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024683.3	-1	validated	p.D306N	0.550	173	0%	190	22.6%	3	0%	benign(0.054)	deleterious(0.02)	neutral(0.387)	superfamily_Ribonuclease H-like
LOC646021	646021	genome.wustl.edu	37	17	29335205	29335205	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_933339.3	+1	model	p.G30	1.000	107	0%	81	14.8%	1	0%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29587481	29587481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042492.2	+1	reviewed	p.R1509C	1.000	342	0%	260	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
NF1	4763	genome.wustl.edu	37	17	29592269	29592269	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042492.2	+1	reviewed	p.E1583*	1.000	335	0%	294	30.6%	0	-	-	-	-	HMMSmart_SM00516
NF1	4763	genome.wustl.edu	37	17	29677227	29677227	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042492.2	+1	reviewed	p.R2450*	1.000	204	0%	140	22.9%	2	50%	-	-	-	NULL
SUZ12	23512	genome.wustl.edu	37	17	30302555	30302555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015355.2	+1	reviewed	p.N216H	1.000	120	0%	154	21.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUZ12	23512	genome.wustl.edu	37	17	30315377	30315377	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015355.2	+1	reviewed	p.T354	0.034	154	0%	190	23.7%	2	50%	-	-	-	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30348822	30348822	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052888.2	+1	validated	p.K219	0.000	217	0%	254	26.4%	0	-	-	-	-	NULL
ZNF207	7756	genome.wustl.edu	37	17	30696759	30696759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098507.1	+1	validated	p.S489L	1.000	62	0%	62	27.4%	201	41.2%	unknown(0)	deleterious(0)	-	NULL
CDK5R1	8851	genome.wustl.edu	37	17	30814748	30814748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003885.2	+1	reviewed	p.K37T	1.000	63	0%	32	28.1%	0	-	possibly_damaging(0.647)	tolerated(0.26)	neutral(0.261)	HMMPfam_CDK5_activator
CDK5R1	8851	genome.wustl.edu	37	17	30814875	30814875	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003885.2	+1	reviewed	p.T79	1.000	91	0%	61	36.1%	0	-	-	-	-	HMMPfam_CDK5_activator
MYO1D	4642	genome.wustl.edu	37	17	31075981	31075981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015194.1	-1	provisional	p.R504Q	1.000	279	0%	248	28.6%	3	33.3%	possibly_damaging(0.85)	deleterious(0.04)	deleterious(0.676)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASIC2	40	genome.wustl.edu	37	17	31351000	31351000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183377.1	-1	reviewed	p.L410I	1.000	358	0%	476	26.3%	0	-	benign(0.003)	tolerated(0.43)	neutral(0.013)	HMMPfam_ASC
LIG3	3980	genome.wustl.edu	37	17	33318736	33318736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013975.2	+1	reviewed	p.S363Y	1.000	134	0%	164	26.8%	11	27.2%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	HMMPfam_DNA_ligase_A_N
SLFN5	162394	genome.wustl.edu	37	17	33588077	33588077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144975.3	+1	validated	p.S367L	0.001	166	0%	199	18.1%	5	40%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
SLFN5	162394	genome.wustl.edu	37	17	33591285	33591285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144975.3	+1	validated	p.N408H	0.006	142	0%	101	35.6%	2	0%	benign(0.036)	tolerated(0.28)	neutral(0.034)	NULL
SLFN11	91607	genome.wustl.edu	37	17	33679519	33679519	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001104587.1	-1	validated	p.V854	0.005	389	0%	356	24.2%	33	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN13	146857	genome.wustl.edu	37	17	33768114	33768114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144682.5	-1	validated	p.R732C	0.001	577	0%	565	22.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN12L	100506736	genome.wustl.edu	37	17	33802344	33802344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145027.1	-1	validated	p.E484D	0.003	111	0.9%	113	28.3%	0	-	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33806394	33806394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145027.1	-1	validated	p.E308K	0.000	101	0%	97	23.7%	0	-	possibly_damaging(0.832)	tolerated(1)	neutral(0.317)	HMMPfam_AAA_4
PEX12	5193	genome.wustl.edu	37	17	33902830	33902830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000286.2	-1	reviewed	p.L351M	1.000	185	0%	132	20.5%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RING/U-box
TAF15	8148	genome.wustl.edu	37	17	34169376	34169376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139215.1	+1	reviewed	p.E307*	1.000	34	0%	23	26.1%	128	2.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ENSG00000248695	0	genome.wustl.edu	37	17	34233356	34233356	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000506920	-1	known	NULL	0.003	15	0%	15	33.3%	0	-	-	-	-	-
CCL4	6351	genome.wustl.edu	37	17	34431299	34431299	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002984.2	+1	validated	p.M1L	1.000	571	0%	580	28.3%	100	0%	possibly_damaging(0.526)	deleterious(0)	deleterious(0.622)	NULL
PIGW	284098	genome.wustl.edu	37	17	34893132	34893132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178517.3	+1	validated	p.F61S	0.188	161	0%	192	30.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ACACA	31	genome.wustl.edu	37	17	35600461	35600461	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198834.1	-1	reviewed	p.V919	1.000	361	0%	399	32.6%	0	-	-	-	-	HMMPfam_ACC_central
ENSG00000224974	0	genome.wustl.edu	37	17	36214825	36214825	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000432091	-1	known	p.I24	1.000	61	0%	66	24.2%	0	-	-	-	-	HMMPfam_14-3-3,HMMSmart_14_3_3,superfamily_14-3-3
GPR179	440435	genome.wustl.edu	37	17	36482808	36482808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004334.2	-1	validated	p.G2215E	0.251	180	0%	307	30.9%	0	-	benign(0.064)	deleterious(0.03)	neutral(0.368)	NULL
GPR179	440435	genome.wustl.edu	37	17	36484352	36484352	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004334.2	-1	validated	p.G1700	0.000	113	0%	193	39.4%	0	-	-	-	-	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36708269	36708269	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025248.2	-1	validated	p.F860	0.917	33	0%	24	37.5%	0	-	-	-	-	NULL
FBXO47	494188	genome.wustl.edu	37	17	37113491	37113491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008777.2	-1	validated	p.R123K	1.000	139	0%	181	29.8%	0	-	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	NULL
FLJ43826	342666	genome.wustl.edu	37	17	37188378	37188378	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_040620.2	+1	model	NULL	0.001	130	0%	208	32.7%	0	-	-	-	-	-
CACNB1	782	genome.wustl.edu	37	17	37343761	37343761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000723.3	-1	reviewed	p.E129K	1.000	101	0%	163	23.3%	0	-	benign(0.413)	tolerated(0.1)	neutral(0.420)	HMMPfam_SH3_1,superfamily_SH3-domain
FBXL20	84961	genome.wustl.edu	37	17	37431266	37431266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032875.2	-1	validated	p.D262Y	1.000	154	0%	140	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00367,superfamily_RNI-like
PPP1R1B	84152	genome.wustl.edu	37	17	37790282	37790282	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032192.2	+1	provisional	p.E130*	0.780	106	0%	159	28.9%	22	4.5%	-	-	-	HMMPfam_DARPP-32
IKZF3	22806	genome.wustl.edu	37	17	37922718	37922718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012481.3	-1	reviewed	p.N285K	0.369	58	0%	64	23.4%	1	0%	benign(0.004)	tolerated(0.22)	neutral(0.042)	NULL
IKZF3	22806	genome.wustl.edu	37	17	37949076	37949076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012481.3	-1	reviewed	p.E92*	1.000	244	0%	302	25.8%	0	-	-	-	-	NULL
ZPBP2	124626	genome.wustl.edu	37	17	38027874	38027874	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_199321.2	+1	validated	p.V134	0.153	145	0%	89	29.2%	0	-	-	-	-	HMMPfam_Sp38
MED24	9862	genome.wustl.edu	37	17	38178266	38178266	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000422942	-1	known	p.E110K	0.015	49	0%	33	36.4%	175	35.4%	-	-	-	NULL
TOP2A	7153	genome.wustl.edu	37	17	38546236	38546236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001067.2	-1	reviewed	p.S1483L	0.303	24	0%	40	25%	20	30%	possibly_damaging(0.718)	deleterious(0.04)	deleterious(0.609)	HMMPfam_DTHCT
KRT222	125113	genome.wustl.edu	37	17	38816445	38816445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152349.2	-1	validated	p.E80D	1.000	232	0%	210	29%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Filament
KRT28	162605	genome.wustl.edu	37	17	38950166	38950166	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181535.3	-1	reviewed	p.L371	0.016	176	0%	252	20.2%	0	-	-	-	-	HMMPfam_Filament
TMEM99	147184	genome.wustl.edu	37	17	38991322	38991322	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145274.2	+1	validated	p.K185T	0.003	365	0%	469	27.5%	1	100%	benign(0.158)	-	-	NULL
KRT12	3859	genome.wustl.edu	37	17	39023060	39023060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000223.3	-1	reviewed	p.E127*	1.000	422	0%	353	31.2%	0	-	-	-	-	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39118805	39118805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_213656.3	-1	reviewed	p.S240Y	0.969	507	0%	368	24.5%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Filament
KRT40	125115	genome.wustl.edu	37	17	39135094	39135094	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182497.3	-1	reviewed	p.I386	0.823	129	0%	124	24.2%	0	-	-	-	-	HMMPfam_Filament
KRTAP4-3	85290	genome.wustl.edu	37	17	39323847	39323847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033187.1	-1	validated	p.S193F	0.007	39	0%	51	19.6%	0	-	unknown(0)	deleterious(0.01)	-	NULL
KRT34	3885	genome.wustl.edu	37	17	39535727	39535727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021013.3	-1	reviewed	p.E294K	0.944	140	0%	176	29.5%	0	-	possibly_damaging(0.753)	tolerated(0.05)	deleterious(0.622)	HMMPfam_Filament
KRT37	8688	genome.wustl.edu	37	17	39577666	39577666	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003770.4	-1	reviewed	p.E398	0.981	112	0%	121	33.9%	0	-	-	-	-	HMMPfam_Filament
KRT37	8688	genome.wustl.edu	37	17	39577825	39577825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003770.4	-1	reviewed	p.Q345H	0.992	66	0%	93	29%	0	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_Filament
KRT38	8687	genome.wustl.edu	37	17	39596473	39596473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006771.3	-1	reviewed	p.N172T	0.974	101	0%	81	25.9%	0	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_Filament
KRT35	3886	genome.wustl.edu	37	17	39634660	39634660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002280.4	-1	reviewed	p.R318C	1.000	138	0%	111	29.7%	0	-	probably_damaging(0.963)	deleterious(0.04)	deleterious(0.754)	superfamily_Prefoldin,HMMPfam_Filament
KRT9	3857	genome.wustl.edu	37	17	39724606	39724606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000226.3	-1	reviewed	p.T401M	0.055	97	0%	144	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
EIF1	10209	genome.wustl.edu	37	17	39846099	39846099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005801.3	+1	validated	p.R34I	1.000	100	0%	74	20.3%	336	30.9%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SUI1,superfamily_eIF1-like
KLHL10	317719	genome.wustl.edu	37	17	40004386	40004386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152467.3	+1	validated	p.D552N	0.832	147	0%	168	30.4%	0	-	benign(0.089)	tolerated(1)	neutral(0.006)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ACLY	47	genome.wustl.edu	37	17	40061039	40061039	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001096.2	-1	reviewed	p.K336	1.000	58	0%	79	25.3%	27	44.4%	-	-	-	superfamily_CoA_ligase
KCNH4	23415	genome.wustl.edu	37	17	40330466	40330466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012285.2	-1	reviewed	p.M114L	1.000	67	0%	32	37.5%	0	-	benign(0.039)	deleterious(0.01)	neutral(0.408)	HMMSmart_PAC,HMMPfam_PAS,superfamily_SSF55785
PLEKHH3	79990	genome.wustl.edu	37	17	40821630	40821630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024927.4	-1	validated	p.R675W	0.995	13	0%	11	45.5%	55	50.9%	benign(0.119)	-	-	NULL
EZH1	2145	genome.wustl.edu	37	17	40870044	40870044	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001991.3	-1	validated	p.E325*	1.000	56	0%	71	19.7%	0	-	-	-	-	NULL
WNK4	65266	genome.wustl.edu	37	17	40934883	40934883	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032387.4	+1	reviewed	p.S242	0.026	44	0%	49	18.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
VAT1	10493	genome.wustl.edu	37	17	41170655	41170655	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006373.3	-1	validated	p.F183	0.989	33	0%	31	16.1%	101	17.8%	-	-	-	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
NBR2	10230	genome.wustl.edu	37	17	41297074	41297074	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_003108.1	+1	reviewed	NULL	0.953	39	0%	46	23.9%	2	50%	-	-	-	-
DHX8	1659	genome.wustl.edu	37	17	41569623	41569623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004941.1	+1	reviewed	p.A156T	0.998	62	0%	66	28.8%	1	0%	unknown(0)	tolerated(0.57)	-	NULL
MEOX1	4222	genome.wustl.edu	37	17	41738738	41738738	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004527.3	-1	reviewed	p.A55	0.346	19	0%	19	21.1%	0	-	unknown(0)	-	-	NULL
C17orf53	78995	genome.wustl.edu	37	17	42232678	42232678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024032.3	+1	validated	p.R558*	0.955	106	0%	187	28.9%	9	22.2%	-	-	-	NULL
ASB16	92591	genome.wustl.edu	37	17	42248388	42248388	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080863.4	+1	reviewed	p.F77	1.000	19	0%	18	44.4%	0	-	-	-	-	superfamily_Ankyrin repeat
UBTF	7343	genome.wustl.edu	37	17	42290648	42290648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014233.2	-1	validated	p.M159I	1.000	49	0%	60	26.7%	5	0%	benign(0.104)	tolerated(0.17)	neutral(0.067)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SLC4A1	6521	genome.wustl.edu	37	17	42335838	42335838	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000342.3	-1	reviewed	p.R344*	0.812	65	0%	72	27.8%	0	-	-	-	-	superfamily_PTrfase/Anion_transptr
ITGA2B	3674	genome.wustl.edu	37	17	42453552	42453552	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000419.3	-1	reviewed	p.G783	0.998	68	0%	90	33.3%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
FZD2	2535	genome.wustl.edu	37	17	42636381	42636381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001466.2	+1	reviewed	p.R442H	1.000	26	0%	46	17.4%	40	37.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Frizzled
GFAP	2670	genome.wustl.edu	37	17	42990720	42990720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002055.3	-1	reviewed	p.A233T	0.998	75	0%	79	29.1%	0	-	benign(0.049)	tolerated(0.07)	neutral(0.322)	HMMPfam_Filament
KIF18B	146909	genome.wustl.edu	37	17	43012651	43012651	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080443.1	-1	provisional	p.F149	0.024	20	0%	25	32%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
FMNL1	752	genome.wustl.edu	37	17	43321221	43321221	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005892.3	+1	reviewed	p.E759	0.799	38	0%	28	32.1%	21	4.7%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
MAP3K14	9020	genome.wustl.edu	37	17	43364301	43364301	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000344686	-1	known	p.G216	0.945	31	0%	54	29.6%	1	0%	-	-	-	NULL
PLEKHM1	9842	genome.wustl.edu	37	17	43522933	43522933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014798.2	-1	reviewed	p.R914W	0.979	70	0%	73	35.6%	12	33.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
CRHR1	1394	genome.wustl.edu	37	17	43884377	43884377	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145146.1	+1	reviewed	p.A12G	1.000	42	0%	71	32.4%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	superfamily_Hormone receptor domain (HRM Pfam 02793)
SPPL2C	162540	genome.wustl.edu	37	17	43923272	43923272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175882.2	+1	validated	p.V334M	0.260	75	0%	46	17.4%	0	-	benign(0.355)	tolerated(0.06)	neutral(0.435)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
SPPL2C	162540	genome.wustl.edu	37	17	43924216	43924216	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175882.2	+1	validated	p.G648	0.606	43	0%	38	26.3%	0	-	-	-	-	NULL
MAPT	4137	genome.wustl.edu	37	17	44101463	44101463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001123066.3	+1	validated	p.D753N	1.000	83	0%	89	10.1%	2	0%	benign(0)	tolerated(1)	-	NULL
CDC27	996	genome.wustl.edu	37	17	45216112	45216112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114091.1	-1	reviewed	p.S572L	1.000	88	0%	107	31.8%	3	33.3%	possibly_damaging(0.47)	deleterious(0)	deleterious(0.600)	superfamily_TPR-like
ITGB3	3690	genome.wustl.edu	37	17	45384956	45384956	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000212.2	+1	reviewed	p.E752*	1.000	99	0%	119	28.6%	5	0%	-	-	-	HMMPfam_Integrin_b_cyt
KPNB1	3837	genome.wustl.edu	37	17	45730222	45730222	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000290158	+1	known	p.R88*	1.000	71	0%	83	24.1%	15	0%	-	-	-	HMMPfam_IBN_N,superfamily_ARM repeat
KPNB1	3837	genome.wustl.edu	37	17	45755420	45755420	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000290158	+1	known	p.N704	0.994	252	0%	350	30%	39	64.1%	-	-	-	superfamily_ARM repeat
SKAP1	8631	genome.wustl.edu	37	17	46262141	46262141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003726.3	-1	reviewed	p.D171Y	1.000	309	0%	427	31.6%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
HOXB13	10481	genome.wustl.edu	37	17	46805538	46805538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006361.5	-1	reviewed	p.M140V	0.998	90	0%	80	21.2%	0	-	benign(0)	tolerated(1)	-	NULL
TTLL6	284076	genome.wustl.edu	37	17	46862321	46862321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130918.1	-1	validated	p.K668N	0.009	107	0%	165	24.8%	0	-	benign(0.044)	deleterious(0)	neutral(0.447)	NULL
UBE2Z	65264	genome.wustl.edu	37	17	47004424	47004424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023079.3	+1	validated	p.E331D	0.999	47	0%	79	25.3%	16	25%	possibly_damaging(0.941)	tolerated(0.22)	neutral(0.428)	NULL
IGF2BP1	10642	genome.wustl.edu	37	17	47119664	47119664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006546.3	+1	reviewed	p.E334D	1.000	199	0%	199	22.6%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
B4GALNT2	124872	genome.wustl.edu	37	17	47241534	47241534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153446.2	+1	validated	p.R344Q	0.989	298	0%	367	31.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ZNF652	22834	genome.wustl.edu	37	17	47390127	47390127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145365.1	-1	validated	p.K327N	1.000	187	0%	147	38.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2H2 and C2HC zinc fingers
LOC100131693	100131693	genome.wustl.edu	37	17	47502210	47502210	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726582.1	-1	model	p.N25K	1.000	222	0%	375	27.7%	1	0%	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
NGFR	4804	genome.wustl.edu	37	17	47588002	47588002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002507.3	+1	reviewed	p.L266R	0.934	71	0%	53	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NXPH3	11248	genome.wustl.edu	37	17	47656364	47656364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007225.2	+1	validated	p.A154V	0.995	46	0%	55	25.5%	0	-	benign(0.036)	tolerated(0.28)	neutral(0.034)	HMMPfam_Neurexophilin
SPOP	8405	genome.wustl.edu	37	17	47696405	47696405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001007226.1	-1	reviewed	p.D140N	1.000	353	0%	337	25.8%	6	33.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
FAM117A	81558	genome.wustl.edu	37	17	47799863	47799863	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030802.3	-1	validated	p.E154*	1.000	32	0%	37	32.4%	7	0%	-	-	-	NULL
TOB1	10140	genome.wustl.edu	37	17	48941243	48941243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005749.2	-1	reviewed	p.P46S	1.000	208	0%	165	27.9%	9	22.2%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	HMMPfam_BTG,HMMSmart_SM00099,PatternScan_BTG_1
SPAG9	9043	genome.wustl.edu	37	17	49072812	49072812	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130528.2	-1	reviewed	p.S684*	1.000	97	0%	95	29.5%	1	0%	-	-	-	NULL
MMD	23531	genome.wustl.edu	37	17	53499045	53499045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012329.2	-1	reviewed	p.K4N	1.000	11	0%	15	26.7%	3	0%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
COIL	8161	genome.wustl.edu	37	17	55028112	55028112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004645.2	-1	reviewed	p.R164I	0.143	255	0%	275	23.3%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	NULL
SCPEP1	59342	genome.wustl.edu	37	17	55065066	55065066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021626.2	+1	validated	p.A109V	1.000	85	0%	136	25.7%	12	50%	possibly_damaging(0.498)	tolerated(0.16)	neutral(0.226)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
MRPS23	51649	genome.wustl.edu	37	17	55917165	55917165	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016070.2	-1	reviewed	p.S184	0.000	198	0%	319	35.1%	66	36.3%	-	-	-	NULL
OR4D1	26689	genome.wustl.edu	37	17	56232705	56232705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012374.1	+1	provisional	p.R64Q	0.972	441	0%	510	29.2%	0	-	benign(0.253)	deleterious(0.04)	neutral(0.375)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D1	26689	genome.wustl.edu	37	17	56232784	56232784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012374.1	+1	provisional	p.K90N	0.004	349	0%	408	27.9%	0	-	benign(0.017)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_SSF81321
MPO	4353	genome.wustl.edu	37	17	56350806	56350806	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000250.1	-1	reviewed	p.V530	1.000	59	0%	47	34%	2	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MPO	4353	genome.wustl.edu	37	17	56355384	56355384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000250.1	-1	reviewed	p.F336	0.812	50	0%	65	35.4%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
BZRAP1	9256	genome.wustl.edu	37	17	56386646	56386646	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004758.2	-1	validated	p.L1329	0.723	46	0%	27	33.3%	0	-	-	-	-	NULL
C17orf47	284083	genome.wustl.edu	37	17	56619994	56619994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001038704.1	-1	predicted	p.F518L	1.000	111	0%	110	30%	0	-	possibly_damaging(0.86)	-	-	NULL
C17orf47	284083	genome.wustl.edu	37	17	56621035	56621035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001038704.1	-1	predicted	p.Q171H	0.000	147	0%	182	28%	0	-	probably_damaging(0.978)	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56642288	56642288	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198393.2	-1	reviewed	p.E1376*	0.976	187	0%	176	26.7%	0	-	-	-	-	NULL
SMG8	55181	genome.wustl.edu	37	17	57289153	57289153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018149.6	+1	validated	p.H581N	1.000	69	0%	71	33.8%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_DUF2146
GDPD1	284161	genome.wustl.edu	37	17	57335176	57335176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182569.3	+1	validated	p.E184G	1.000	83	0%	99	25.3%	0	-	benign(0.12)	tolerated(0.31)	neutral(0.036)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
GDPD1	284161	genome.wustl.edu	37	17	57344523	57344523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182569.3	+1	validated	p.S233Y	1.000	131	0%	168	30.4%	1	0%	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CLTC	1213	genome.wustl.edu	37	17	57760295	57760295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004859.3	+1	reviewed	p.E1265*	1.000	213	0%	157	22.9%	48	2%	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
VMP1	81671	genome.wustl.edu	37	17	57842453	57842453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030938.3	+1	validated	p.S179Y	1.000	140	0%	148	24.3%	16	12.5%	possibly_damaging(0.903)	deleterious(0.04)	deleterious(0.707)	NULL
USP32	84669	genome.wustl.edu	37	17	58258686	58258686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032582.3	-1	validated	p.S1516L	1.000	137	0%	122	36.1%	18	33.3%	probably_damaging(0.978)	tolerated(0.13)	deleterious(0.673)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
PPM1D	8493	genome.wustl.edu	37	17	58725289	58725289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003620.2	+1	reviewed	p.F288C	1.000	227	0%	291	23.4%	7	57.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PPM1D	8493	genome.wustl.edu	37	17	58740668	58740668	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003620.2	+1	reviewed	p.E525*	1.000	183	0%	227	36.1%	0	-	-	-	-	NULL
INTS2	57508	genome.wustl.edu	37	17	59984791	59984791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020748.2	-1	validated	p.L395V	1.000	46	0%	38	13.2%	0	-	possibly_damaging(0.767)	tolerated(0.09)	deleterious(0.581)	NULL
INTS2	57508	genome.wustl.edu	37	17	60003726	60003726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020748.2	-1	validated	p.E102*	1.000	139	0%	181	20.4%	0	-	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60033759	60033759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005121.2	-1	reviewed	p.S1855L	1.000	193	0%	164	39%	0	-	benign(0.037)	tolerated(0.09)	neutral(0.298)	HMMPfam_TRAP_240kDa
ENSG00000188755	0	genome.wustl.edu	37	17	60351200	60351200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000339120	-1	known	p.F39V	0.062	118	0%	96	10.4%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
EFCAB3	146779	genome.wustl.edu	37	17	60472539	60472539	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144933.1	+1	validated	p.E212*	0.988	403	0%	375	25.1%	0	-	-	-	-	NULL
TLK2	11011	genome.wustl.edu	37	17	60631042	60631042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006852.3	+1	validated	p.K216Q	1.000	194	0%	245	31.8%	0	-	benign(0.176)	tolerated(0.44)	neutral(0.029)	NULL
MARCH10	162333	genome.wustl.edu	37	17	60813387	60813387	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100875.1	-1	validated	p.D614	0.000	324	0%	423	17.3%	0	-	-	-	-	NULL
KCNH6	81033	genome.wustl.edu	37	17	61619699	61619699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030779.2	+1	reviewed	p.K684N	1.000	10	0%	21	42.9%	0	-	probably_damaging(0.979)	tolerated(0.29)	neutral(0.451)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
STRADA	92335	genome.wustl.edu	37	17	61781013	61781013	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001003787.2	-1	reviewed	p.I414	1.000	40	0%	32	31.2%	12	25%	-	-	-	NULL
DDX42	11325	genome.wustl.edu	37	17	61888463	61888463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007372.2	+1	reviewed	p.K443T	1.000	109	0%	140	25%	6	33.3%	possibly_damaging(0.679)	deleterious(0.01)	deleterious(0.647)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FTSJ3	117246	genome.wustl.edu	37	17	61898226	61898226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017647.3	-1	reviewed	p.R682I	1.000	212	0%	252	18.7%	23	43.4%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_Spb1_C
CSH1	1442	genome.wustl.edu	37	17	61972770	61972770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022640.2	-1	reviewed	p.E173D	0.000	122	0%	172	21.5%	0	-	benign(0.035)	tolerated(0.46)	neutral(0.014)	NULL
SCN4A	6329	genome.wustl.edu	37	17	62036709	62036709	+	Silent	SNP	G	G	A	rs181494727	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000334.4	-1	reviewed	p.F645	0.995	66	0%	52	17.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TEX2	55852	genome.wustl.edu	37	17	62265639	62265639	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018469.3	-1	validated	p.K778	0.997	78	0%	72	30.6%	13	38.4%	-	-	-	NULL
CEP95	90799	genome.wustl.edu	37	17	62530844	62530844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138363.1	+1	provisional	p.R687W	1.000	61	0%	51	19.6%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AXIN2	8313	genome.wustl.edu	37	17	63526198	63526198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004655.3	-1	reviewed	p.D810N	1.000	269	0%	266	32%	19	68.4%	possibly_damaging(0.944)	tolerated(0.09)	deleterious(0.685)	HMMPfam_DIX,HMMSmart_SM00021
CEP112	201134	genome.wustl.edu	37	17	64066094	64066094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145036.3	-1	validated	p.E265V	1.000	178	0%	121	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKCA	5578	genome.wustl.edu	37	17	64685162	64685162	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002737.2	+1	reviewed	p.F305	1.000	97	0%	86	25.6%	3	66.6%	-	-	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65110475	65110475	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014877.3	-1	validated	p.R1295*	1.000	317	0%	220	20.9%	2	0%	-	-	-	NULL
BPTF	2186	genome.wustl.edu	37	17	65907293	65907293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182641.3	+1	reviewed	p.S1098Y	0.618	144	0%	135	29.6%	0	-	possibly_damaging(0.855)	deleterious(0.01)	deleterious(0.736)	NULL
BPTF	2186	genome.wustl.edu	37	17	65907430	65907430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182641.3	+1	reviewed	p.D1144Y	0.272	118	0%	132	18.2%	0	-	possibly_damaging(0.745)	deleterious(0.01)	deleterious(0.679)	NULL
BPTF	2186	genome.wustl.edu	37	17	65955683	65955683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182641.3	+1	reviewed	p.I2651M	0.998	117	0%	138	32.6%	3	66.6%	possibly_damaging(0.765)	tolerated(0.29)	neutral(0.313)	NULL
BPTF	2186	genome.wustl.edu	37	17	65972027	65972027	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182641.3	+1	reviewed	p.V2893	1.000	107	0%	88	22.7%	6	33.3%	-	-	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
SLC16A6	9120	genome.wustl.edu	37	17	66267275	66267275	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004694.4	-1	validated	p.F342	0.009	97	0%	100	35%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A6	9120	genome.wustl.edu	37	17	66274245	66274245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004694.4	-1	validated	p.V73L	1.000	72	0%	75	34.7%	0	-	benign(0.097)	tolerated(0.11)	neutral(0.279)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A6	9120	genome.wustl.edu	37	17	66274446	66274446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004694.4	-1	validated	p.L6V	0.001	105	0%	111	26.1%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	superfamily_MFS_gen_substrate_transporter
ARSG	22901	genome.wustl.edu	37	17	66347801	66347801	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014960.3	+1	validated	p.A180	0.003	102	0%	95	31.6%	2	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
WIPI1	55062	genome.wustl.edu	37	17	66447029	66447029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017983.5	-1	validated	p.P58L	0.998	45	0%	47	21.3%	30	56.6%	benign(0.422)	deleterious(0.02)	deleterious(0.520)	superfamily_WD40 repeat-like
FAM20A	54757	genome.wustl.edu	37	17	66548040	66548040	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017565.3	-1	validated	p.F231	0.918	27	0%	14	28.6%	2	0%	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66878020	66878020	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007168.2	-1	reviewed	p.S1270	0.998	242	0%	186	20.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA9	10350	genome.wustl.edu	37	17	66989221	66989221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080283.3	-1	reviewed	p.S1187Y	0.015	205	0%	212	36.8%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67145057	67145057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080282.3	-1	reviewed	p.E1515*	1.000	242	0%	192	24%	0	-	-	-	-	NULL
ABCA10	10349	genome.wustl.edu	37	17	67160293	67160293	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080282.3	-1	reviewed	p.L1095	0.000	210	0%	167	24%	0	-	-	-	-	NULL
ABCA10	10349	genome.wustl.edu	37	17	67189275	67189275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080282.3	-1	reviewed	p.M586V	1.000	236	0%	253	32.8%	0	-	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67300808	67300808	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018672.3	-1	reviewed	e6+2	1.000	102	0%	72	31.9%	0	-	-	-	-	-
ABCA5	23461	genome.wustl.edu	37	17	67310467	67310467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018672.3	-1	reviewed	p.K30N	0.974	208	0%	153	24.8%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
MAP2K6	5608	genome.wustl.edu	37	17	67521049	67521049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002758.3	+1	reviewed	p.R224I	1.000	128	0%	101	30.7%	22	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SDK2	54549	genome.wustl.edu	37	17	71334547	71334547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000316893	-1	known	p.R2166C	0.000	5	0.000	7	0.571	0	-	unknown(0)	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71418494	71418494	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144952.1	-1	provisional	p.R659	0.966	41	0%	57	10.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TTYH2	94015	genome.wustl.edu	37	17	72233435	72233435	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032646.5	+1	reviewed	p.V139	0.868	60	0%	60	25%	1	0%	-	-	-	HMMPfam_Tweety
DNAI2	64446	genome.wustl.edu	37	17	72281206	72281206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023036.4	+1	reviewed	p.T71A	0.998	48	0%	44	40.9%	0	-	benign(0.004)	tolerated(0.25)	neutral(0.037)	NULL
DNAI2	64446	genome.wustl.edu	37	17	72295872	72295872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023036.4	+1	reviewed	p.R247Q	0.992	23	0%	49	18.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40 repeat-like
DNAI2	64446	genome.wustl.edu	37	17	72301504	72301504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023036.4	+1	reviewed	p.K378N	1.000	47	0%	57	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIF19	124602	genome.wustl.edu	37	17	72324649	72324650	+	Frame_Shift_Ins	INS	-	-	C	rs11412158	byCluster;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000440684	+1	known	p.R320fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
GPR142	350383	genome.wustl.edu	37	17	72368371	72368371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181790.1	+1	provisional	p.R341W	0.069	26	0%	40	25%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_SSF81321
CD300A	11314	genome.wustl.edu	37	17	72469988	72469988	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007261.2	+1	validated	p.V118	0.000	126	0%	127	23.6%	13	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
C17orf77	146723	genome.wustl.edu	37	17	72588425	72588425	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152460.2	+1	validated	p.T80	0.000	155	0%	159	27%	0	-	-	-	-	NULL
CD300LF	146722	genome.wustl.edu	37	17	72691300	72691300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139018.3	-1	validated	p.S270G	0.000	24	0%	39	30.8%	6	0%	benign(0.103)	tolerated(0.11)	neutral(0.280)	NULL
TMEM104	54868	genome.wustl.edu	37	17	72791203	72791203	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017728.3	+1	validated	p.L160	1.000	100	0%	78	26.9%	0	-	-	-	-	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72846012	72846012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000835.3	-1	reviewed	p.E518K	0.998	22	0%	40	32.5%	0	-	benign(0.39)	tolerated(0.09)	neutral(0.421)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
KCTD2	23510	genome.wustl.edu	37	17	73058280	73058280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015353.1	+1	validated	p.V234	0.998	49	0%	58	27.6%	3	33.3%	-	-	-	NULL
ITGB4	3691	genome.wustl.edu	37	17	73732134	73732134	+	Nonsense_Mutation	SNP	C	C	T	rs121912462		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000213.3	+1	reviewed	p.R554*	1.000	50	0%	85	17.6%	24	0%	-	-	-	HMMPfam_EGF_2,superfamily_EGF/Laminin
PRPSAP1	5635	genome.wustl.edu	37	17	74307681	74307681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002766.2	-1	validated	p.R367I	1.000	57	0%	52	23.1%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PRTase-like
MFSD11	79157	genome.wustl.edu	37	17	74774367	74774367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024311.2	+1	provisional	p.S428Y	0.479	106	0.9%	93	34.4%	7	42.8%	possibly_damaging(0.437)	deleterious(0.02)	deleterious(0.525)	superfamily_MFS general substrate transporter
DNAH17	8632	genome.wustl.edu	37	17	76567819	76567819	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000389840	-1	known	p.T195	1.000	30	0%	37	40.5%	0	-	-	-	-	HMMPfam_DHC_N1
C1QTNF1	114897	genome.wustl.edu	37	17	77044092	77044092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030968.2	+1	validated	p.E256D	1.000	73	0%	91	28.6%	7	14.2%	benign(0.012)	tolerated(0.22)	neutral(0.043)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
EIF4A3	9775	genome.wustl.edu	37	17	78111286	78111286	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014740.3	-1	reviewed	p.T294	0.031	40	0%	51	43.1%	131	39.6%	-	-	-	HMMSmart_HELICc,superfamily_SSF52540
RNF213	57674	genome.wustl.edu	37	17	78318916	78318916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508628	+1	known	p.D2261Y	1.000	98	0%	85	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF213	57674	genome.wustl.edu	37	17	78320284	78320284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508628	+1	known	p.D2717N	0.000	41	0%	51	31.4%	1	0%	benign(0.013)	tolerated(0.9)	neutral(0.001)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FN3K	64122	genome.wustl.edu	37	17	80698702	80698702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022158.3	+1	validated	p.E119D	0.986	39	0%	55	10.9%	75	9.3%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Kinase_like
TBCD	6904	genome.wustl.edu	37	17	80851477	80851477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005993.4	+1	reviewed	p.G540S	1.000	21	0%	34	17.6%	26	42.3%	benign(0.092)	tolerated(0.42)	neutral(0.021)	superfamily_ARM repeat
THOC1	9984	genome.wustl.edu	37	18	224148	224148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005131.2	-1	validated	p.R414W	0.759	35	0%	29	20.7%	4	50%	benign(0.175)	deleterious(0.01)	neutral(0.422)	NULL
COLEC12	81035	genome.wustl.edu	37	18	348156	348156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130386.2	-1	validated	p.E63D	1.000	78	0%	103	24.3%	0	-	unknown(0)	-	-	NULL
CLUL1	27098	genome.wustl.edu	37	18	627445	627445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014410.4	+1	validated	p.F258L	1.000	249	0%	218	30.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Clusterin,HMMSmart_CLa
YES1	7525	genome.wustl.edu	37	18	736915	736915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005433.3	-1	reviewed	p.R395Q	1.000	179	0%	150	36.7%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
METTL4	64863	genome.wustl.edu	37	18	2539133	2539133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022840.3	-1	validated	p.D429Y	1.000	477	0%	405	20.7%	2	0%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_MT-A70
SMCHD1	23347	genome.wustl.edu	37	18	2697859	2697859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015295.2	+1	validated	p.K388Q	1.000	209	0%	150	24.7%	0	-	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	NULL
LPIN2	9663	genome.wustl.edu	37	18	2951301	2951301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014646.2	-1	reviewed	p.F114L	1.000	92	0%	68	32.4%	0	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	HMMPfam_Lipin_N
MYOM1	8736	genome.wustl.edu	37	18	3164279	3164279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003803.3	-1	reviewed	p.R500*	1.000	36	0%	24	20.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
DLGAP1	9229	genome.wustl.edu	37	18	3502552	3502552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004746.2	-1	provisional	p.F888C	1.000	155	0%	80	35%	2	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_GKAP
DLGAP1	9229	genome.wustl.edu	37	18	3814081	3814081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004746.2	-1	provisional	p.L384I	1.000	175	0%	243	21.8%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
EPB41L3	23136	genome.wustl.edu	37	18	5398065	5398065	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012307.2	-1	provisional	p.T809	1.000	460	0%	379	23.7%	0	-	-	-	-	NULL
LAMA1	284217	genome.wustl.edu	37	18	6966239	6966239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005559.2	-1	validated	p.E2319D	1.000	56	0%	45	28.9%	0	-	probably_damaging(0.991)	tolerated(0.32)	neutral(0.468)	superfamily_Concanavalin A-like lectins/glucanases
LRRC30	339291	genome.wustl.edu	37	18	7231781	7231781	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105581.1	+1	provisional	p.I215	0.850	112	0.9%	98	23.5%	0	-	-	-	-	superfamily_SSF52058
PTPRM	5797	genome.wustl.edu	37	18	8143705	8143705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105244.1	+1	reviewed	p.I743S	0.999	314	0%	334	32%	1	0%	benign(0.406)	deleterious(0)	deleterious(0.575)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9254250	9254250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015208.3	+1	validated	p.E329*	1.000	230	0%	237	28.7%	0	-	-	-	-	superfamily_Ankyrin repeat
TXNDC2	84203	genome.wustl.edu	37	18	9887209	9887209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098529.1	+1	validated	p.E245*	0.000	467	0%	586	32.9%	0	-	-	-	-	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10671631	10671631	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000503781	-1	known	p.R612*	0.963	139	0%	80	17.5%	0	-	-	-	-	NULL
LOC729602	729602	genome.wustl.edu	37	18	11625742	11625742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002344140.1	-1	model	p.K68N	0.002	500	0%	542	26.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_NPIP
SLMO1	10650	genome.wustl.edu	37	18	12421567	12421567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142405.1	+1	validated	p.Y77C	1.000	48	2.1%	63	28.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRELI
SLMO1	10650	genome.wustl.edu	37	18	12427292	12427292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142405.1	+1	validated	p.M145I	1.000	101	0%	165	24.2%	0	-	benign(0.019)	tolerated(0.27)	neutral(0.035)	HMMPfam_PRELI
SEH1L	81929	genome.wustl.edu	37	18	12986964	12986964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013437.1	+1	reviewed	p.D392N	1.000	99	0%	126	35.7%	124	37%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	NULL
SEH1L	81929	genome.wustl.edu	37	18	12987041	12987041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013437.1	+1	reviewed	p.E417D	1.000	107	0%	143	19.6%	27	18.5%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
ZNF519	162655	genome.wustl.edu	37	18	14105065	14105065	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145287.3	-1	validated	p.E492*	0.780	450	0%	450	29.1%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF519	162655	genome.wustl.edu	37	18	14106058	14106058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145287.3	-1	validated	p.N161H	0.001	173	0%	152	32.9%	0	-	benign(0.084)	tolerated(0.14)	neutral(0.256)	NULL
NF1P5	4768	genome.wustl.edu	37	18	14156216	14156216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418350	-1	known	p.F94L	0.214	29	0%	33	27.3%	0	-	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14377654	14377654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_929288.3	-1	model	p.S370Y	0.997	176	0%	165	18.2%	0	-	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
LOC646359	646359	genome.wustl.edu	37	18	14377894	14377894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_929288.3	-1	model	p.S290Y	0.794	108	0%	102	25.5%	0	-	-	-	-	NULL
ROCK1	6093	genome.wustl.edu	37	18	18608876	18608876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005406.2	-1	reviewed	p.D358N	1.000	271	0%	202	25.2%	1	100%	benign(0.347)	deleterious(0)	deleterious(0.554)	HMMSmart_S_TK_X,superfamily_Kinase_like,HMMPfam_Pkinase_C
MIB1	57534	genome.wustl.edu	37	18	19399502	19399502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020774.2	+1	validated	p.R575H	1.000	423	0%	355	26.5%	4	25%	benign(0.036)	tolerated(0.6)	neutral(0.006)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MIB1	57534	genome.wustl.edu	37	18	19424149	19424149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020774.2	+1	validated	p.R716C	1.000	100	0%	119	28.6%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CTAGE1	64693	genome.wustl.edu	37	18	19996610	19996610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_172241.2	-1	validated	p.E389K	0.004	463	0%	565	28%	0	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20774417	20774417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001100619.2	+1	validated	p.R308Q	1.000	37	0%	36	25%	3	33.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
NPC1	4864	genome.wustl.edu	37	18	21148836	21148836	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000271.4	-1	reviewed	p.K138N	0.006	83	0%	88	12.5%	0	-	benign(0.018)	tolerated(0.47)	neutral(0.011)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21470011	21470011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198129.1	+1	reviewed	p.F1780L	0.979	97	0%	145	20.7%	1	100%	benign(0.01)	tolerated(0.71)	neutral(0.002)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
TTC39C	125488	genome.wustl.edu	37	18	21705426	21705426	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135993.1	+1	validated	p.A444	0.939	121	0%	176	33.5%	3	100%	-	-	-	HMMPfam_Deme6,superfamily_TPR-like
CABYR	26256	genome.wustl.edu	37	18	21723370	21723370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012189.2	+1	reviewed	p.Q64H	0.320	42	0%	46	17.4%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
CABYR	26256	genome.wustl.edu	37	18	21735699	21735699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012189.2	+1	reviewed	p.K78N	0.998	163	0%	132	30.3%	1	0%	benign(0.382)	deleterious(0)	deleterious(0.567)	NULL
ZNF521	25925	genome.wustl.edu	37	18	22805776	22805776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015461.2	-1	validated	p.Q702H	1.000	371	0%	231	29%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF521	25925	genome.wustl.edu	37	18	22806343	22806343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015461.2	-1	validated	p.F513L	1.000	230	0%	175	26.9%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDH2	1000	genome.wustl.edu	37	18	25565162	25565162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001792.3	-1	reviewed	p.L671I	1.000	76	0%	70	32.9%	3	100%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25565608	25565608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001792.3	-1	reviewed	p.S620*	1.000	184	0%	209	28.2%	1	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28649015	28649015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024422.3	-1	reviewed	p.E785K	0.979	91	0%	110	30%	20	45%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
DSC1	1823	genome.wustl.edu	37	18	28719768	28719768	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024421.2	-1	reviewed	p.E536*	1.000	125	0%	82	22%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28720116	28720116	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024421.2	-1	reviewed	p.E470A	0.997	182	0%	113	27.4%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMSmart_SM00112,superfamily_Cadherin-like
DSG4	147409	genome.wustl.edu	37	18	28972226	28972226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001134453.1	+1	reviewed	p.L310I	1.000	111	0%	82	35.4%	0	-	benign(0.005)	tolerated(0.63)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29041210	29041210	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001944.2	+1	reviewed	p.E278D	1.000	111	0%	101	25.7%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_Cadherin,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29055730	29055730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001944.2	+1	reviewed	p.F836C	1.000	173	0%	141	27.7%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29488744	29488744	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014939.3	-1	validated	p.E365	1.000	102	0%	65	21.5%	0	-	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29496337	29496337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014939.3	-1	validated	p.R172Q	1.000	142	0%	103	28.2%	1	100%	benign(0.158)	tolerated(1)	neutral(0.014)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29787227	29787227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005925.2	+1	validated	p.N187T	1.000	47	0%	59	27.1%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
FAM59A	64762	genome.wustl.edu	37	18	29848074	29848074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022751.1	-1	provisional	p.G796	0.143	76	0%	59	23.7%	1	0%	-	-	-	NULL
KLHL14	57565	genome.wustl.edu	37	18	30260506	30260506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020805.1	-1	provisional	p.R432M	1.000	86	0%	95	20%	8	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL14	57565	genome.wustl.edu	37	18	30275470	30275470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020805.1	-1	provisional	p.N372S	1.000	127	0%	107	26.2%	7	57.1%	possibly_damaging(0.643)	tolerated(0.16)	neutral(0.285)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
C18orf34	374864	genome.wustl.edu	37	18	30672747	30672747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105528.1	-1	validated	p.T789N	0.000	154	0%	103	19.4%	0	-	benign(0.331)	tolerated(0.47)	neutral(0.115)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30873233	30873233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105528.1	-1	validated	p.S356A	0.000	156	0%	160	28.7%	0	-	benign(0.062)	tolerated(0.67)	neutral(0.007)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30926319	30926319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105528.1	-1	validated	p.R172C	0.216	184	0.5%	170	25.9%	0	-	benign(0.19)	deleterious(0.03)	neutral(0.383)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31263384	31263384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030632.1	+1	provisional	p.T244I	1.000	69	0%	43	27.9%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31312004	31312004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030632.1	+1	provisional	p.G318W	1.000	277	0%	315	11.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31320115	31320115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030632.1	+1	provisional	p.F916S	0.929	111	0%	101	36.6%	0	-	possibly_damaging(0.441)	deleterious(0)	deleterious(0.589)	NULL
NOL4	8715	genome.wustl.edu	37	18	31709925	31709925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003787.3	-1	validated	p.F108L	1.000	343	0%	448	27.2%	0	-	possibly_damaging(0.458)	deleterious(0)	deleterious(0.595)	NULL
DTNA	1837	genome.wustl.edu	37	18	32418103	32418103	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001390.4	+1	reviewed	p.A380	1.000	201	0%	162	29%	0	-	-	-	-	NULL
DTNA	1837	genome.wustl.edu	37	18	32418758	32418758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001390.4	+1	reviewed	p.L408I	1.000	211	0%	248	29.8%	0	-	possibly_damaging(0.887)	tolerated(0.17)	neutral(0.406)	NULL
DTNA	1837	genome.wustl.edu	37	18	32438299	32438299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001390.4	+1	reviewed	p.S501Y	1.000	102	0%	132	40.2%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
ZNF396	252884	genome.wustl.edu	37	18	32948410	32948410	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145756.2	-1	validated	e4-1	0.020	139	0%	93	24.7%	0	-	-	-	-	-
GALNT1	2589	genome.wustl.edu	37	18	33234695	33234695	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020474.3	+1	reviewed	p.F23	1.000	73	0%	82	9.8%	3	0%	-	-	-	NULL
GALNT1	2589	genome.wustl.edu	37	18	33272250	33272250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020474.3	+1	reviewed	p.S422Y	1.000	198	0.5%	127	33.9%	5	60%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases
C18orf21	83608	genome.wustl.edu	37	18	33558801	33558801	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031446.3	+1	validated	p.T165	0.999	172	0%	142	26.1%	13	38.4%	-	-	-	NULL
SLC39A6	25800	genome.wustl.edu	37	18	33703529	33703529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012319.3	-1	validated	p.L357I	1.000	552	0%	629	26.7%	5	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_Zip
FHOD3	80206	genome.wustl.edu	37	18	34261521	34261521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025135.2	+1	validated	p.R478I	1.000	138	0%	154	29.9%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34310720	34310720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025135.2	+1	validated	p.A1002T	1.000	181	0%	88	35.2%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
KIAA1328	57536	genome.wustl.edu	37	18	34424262	34424262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020776.1	+1	validated	p.A110V	1.000	95	0%	77	16.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PIK3C3	5289	genome.wustl.edu	37	18	39593533	39593533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002647.2	+1	validated	p.S433Y	1.000	571	0%	329	23.4%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
SYT4	6860	genome.wustl.edu	37	18	40854298	40854298	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020783.3	-1	validated	p.L32	0.896	164	0%	137	24.1%	0	-	-	-	-	NULL
SETBP1	26040	genome.wustl.edu	37	18	42281665	42281665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015559.2	+1	validated	p.K118N	1.000	382	0%	379	27.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43216962	43216962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007163.3	+1	validated	p.L220I	0.000	713	0%	686	25.2%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_UT
SLC14A2	8170	genome.wustl.edu	37	18	43262478	43262478	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007163.3	+1	validated	p.V919	0.998	215	0%	210	24.8%	0	-	-	-	-	NULL
SLC14A1	6563	genome.wustl.edu	37	18	43310353	43310353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128588.3	+1	reviewed	p.S79L	0.000	124	0%	119	61.3%	1	0%	benign(0.001)	tolerated(0.83)	neutral(0.001)	NULL
EPG5	57724	genome.wustl.edu	37	18	43462380	43462380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020964.2	-1	validated	p.H1793N	1.000	191	0%	168	29.2%	0	-	probably_damaging(0.962)	tolerated(0.45)	neutral(0.417)	NULL
EPG5	57724	genome.wustl.edu	37	18	43502542	43502542	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020964.2	-1	validated	p.R955*	1.000	187	0.5%	181	43.6%	0	-	-	-	-	NULL
EPG5	57724	genome.wustl.edu	37	18	43510656	43510656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020964.2	-1	validated	p.L800M	1.000	194	0%	147	19%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
ST8SIA5	29906	genome.wustl.edu	37	18	44260332	44260332	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013305.4	-1	reviewed	p.F268	1.000	17	0%	25	28%	0	-	-	-	-	HMMPfam_Glyco_transf_29
PIAS2	9063	genome.wustl.edu	37	18	44400988	44400988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004671.2	-1	validated	p.S519L	0.985	210	0%	194	25.3%	28	28.5%	benign(0.196)	deleterious(0.05)	neutral(0.364)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470867	44470867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004671.2	-1	validated	p.E59*	1.000	235	0%	249	37.8%	1	100%	-	-	-	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44593414	44593414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031303.2	+1	validated	p.N178S	1.000	188	0%	108	17.6%	0	-	benign(0.09)	tolerated(0.21)	neutral(0.050)	superfamily_SSF52540
MYO5B	4645	genome.wustl.edu	37	18	47463706	47463706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080467.2	-1	reviewed	p.G605V	1.000	168	0%	179	20.1%	4	100%	possibly_damaging(0.594)	tolerated(0.12)	neutral(0.466)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MBD1	4152	genome.wustl.edu	37	18	47796400	47796400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000339998	-1	known	p.I545S	0.022	245	0%	172	27.9%	3	33.3%	unknown(0)	-	-	NULL
MEX3C	51320	genome.wustl.edu	37	18	48702883	48702883	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016626.4	-1	reviewed	p.H606	1.000	255	0%	259	30.1%	17	52.9%	-	-	-	superfamily_SSF57850
DCC	1630	genome.wustl.edu	37	18	50731718	50731718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005215.3	+1	reviewed	p.S569F	0.741	357	0%	288	27.1%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MBD2	8932	genome.wustl.edu	37	18	51686182	51686182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003927.3	-1	reviewed	p.M401L	0.661	198	0%	156	25.6%	267	41.9%	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
POLI	11201	genome.wustl.edu	37	18	51810358	51810358	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007195.2	+1	validated	p.E348*	1.000	80	0%	71	36.6%	1	0%	-	-	-	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain
POLI	11201	genome.wustl.edu	37	18	51820558	51820558	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007195.2	+1	validated	p.N648	0.877	285	0%	243	26.7%	5	80%	-	-	-	NULL
C18orf54	162681	genome.wustl.edu	37	18	51904607	51904607	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173529.4	+1	validated	p.P370	0.980	160	0%	139	31.7%	6	0%	-	-	-	NULL
TCF4	6925	genome.wustl.edu	37	18	52946880	52946880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083962.1	-1	reviewed	p.A186V	1.000	119	0%	97	30.9%	5	0%	benign(0.072)	deleterious(0.01)	neutral(0.411)	NULL
TCF4	6925	genome.wustl.edu	37	18	53017609	53017609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083962.1	-1	reviewed	p.P177H	1.000	152	0%	152	19.7%	2	100%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
TCF4	6925	genome.wustl.edu	37	18	53302958	53302958	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000398339	-1	known	p.S57	0.000	18	0%	39	33.3%	0	-	-	-	-	NULL
TXNL1	9352	genome.wustl.edu	37	18	54281690	54281690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004786.2	-1	validated	p.R234C	1.000	90	0%	64	35.9%	120	30%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1000
TXNL1	9352	genome.wustl.edu	37	18	54285275	54285275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004786.2	-1	validated	p.R151Q	1.000	244	0%	253	24.1%	60	28.3%	benign(0.076)	tolerated(0.51)	neutral(0.014)	NULL
WDR7	23335	genome.wustl.edu	37	18	54348593	54348593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015285.2	+1	reviewed	p.K106Q	1.000	260	0%	209	31.1%	0	-	possibly_damaging(0.486)	deleterious(0.01)	deleterious(0.567)	superfamily_Prolyl oligopeptidase N-terminal domain
WDR7	23335	genome.wustl.edu	37	18	54361879	54361879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015285.2	+1	reviewed	p.F332L	1.000	134	0%	101	27.7%	1	0%	probably_damaging(0.973)	tolerated(1)	neutral(0.415)	superfamily_Prolyl oligopeptidase N-terminal domain
WDR7	23335	genome.wustl.edu	37	18	54424511	54424511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015285.2	+1	reviewed	p.S896Y	1.000	492	0.2%	299	28.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ST8SIA3	51046	genome.wustl.edu	37	18	55024661	55024661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015879.2	+1	validated	p.Q274*	1.000	143	0%	125	24.8%	0	-	-	-	-	HMMPfam_Glyco_transf_29
NEDD4L	23327	genome.wustl.edu	37	18	55833031	55833031	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144967.1	+1	validated	p.R20	0.978	50	0%	35	25.7%	1	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NEDD4L	23327	genome.wustl.edu	37	18	55989679	55989679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144967.1	+1	validated	p.R124Q	1.000	21	0%	16	56.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ALPK2	115701	genome.wustl.edu	37	18	56202263	56202263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052947.3	-1	validated	p.G1719V	0.000	202	0%	200	27.5%	0	-	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56247380	56247380	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052947.3	-1	validated	p.E210*	0.531	361	0%	302	32.5%	0	-	-	-	-	NULL
ZNF532	55205	genome.wustl.edu	37	18	56587855	56587855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018181.4	+1	validated	p.T779M	0.998	255	0%	165	24.8%	18	22.2%	possibly_damaging(0.944)	deleterious(0.04)	deleterious(0.738)	NULL
LMAN1	3998	genome.wustl.edu	37	18	57022585	57022585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005570.3	-1	reviewed	p.G146D	1.000	63	0%	72	16.7%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
CDH20	28316	genome.wustl.edu	37	18	59167718	59167718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031891.2	+1	reviewed	p.S215Y	1.000	104	0%	105	16.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PHLPP1	23239	genome.wustl.edu	37	18	60612354	60612354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_194449.2	+1	validated	p.K546N	0.993	75	0%	74	24.3%	1	100%	possibly_damaging(0.848)	tolerated(0.1)	deleterious(0.612)	superfamily_L domain-like
KDSR	2531	genome.wustl.edu	37	18	61030017	61030017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002035.2	-1	reviewed	p.N65H	0.996	207	0%	202	27.2%	3	0%	probably_damaging(0.956)	deleterious(0.02)	deleterious(0.782)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
SERPINB4	6318	genome.wustl.edu	37	18	61310688	61310688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002974.2	-1	validated	p.L42F	0.000	235	0%	168	58.3%	0	-	benign(0.054)	tolerated(0.58)	neutral(0.009)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB3	6317	genome.wustl.edu	37	18	61322905	61322905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006919.2	-1	validated	p.F387L	0.006	272	0%	238	61.3%	0	-	possibly_damaging(0.889)	tolerated(0.11)	deleterious(0.621)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB7	8710	genome.wustl.edu	37	18	61471494	61471494	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040147.1	+1	validated	p.Q256	0.346	164	0%	127	33.9%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB2	5055	genome.wustl.edu	37	18	61564971	61564971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143818.1	+1	validated	p.R143Q	0.001	203	0%	190	33.2%	0	-	possibly_damaging(0.453)	tolerated(0.34)	neutral(0.171)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB2	5055	genome.wustl.edu	37	18	61570237	61570237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143818.1	+1	validated	p.E316*	1.000	130	0%	134	19.4%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
HMSD	284293	genome.wustl.edu	37	18	61627535	61627535	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001123366.1	+1	validated	p.F122	0.000	150	0%	103	35%	0	-	-	-	-	NULL
CDH19	28513	genome.wustl.edu	37	18	64235666	64235666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021153.2	-1	reviewed	p.E159D	1.000	191	0%	207	35.7%	0	-	possibly_damaging(0.774)	deleterious(0)	deleterious(0.733)	HMMPfam_Cadherin,superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64235727	64235727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021153.2	-1	reviewed	p.S139L	0.989	186	0%	226	34.5%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65178608	65178608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032160.2	-1	validated	p.E1090K	0.998	195	0%	180	27.8%	0	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TMX3	54495	genome.wustl.edu	37	18	66348217	66348217	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019022.3	-1	validated	e14+1	1.000	462	0%	286	32.2%	0	-	-	-	-	-
CD226	10666	genome.wustl.edu	37	18	67531668	67531668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006566.2	-1	reviewed	p.N298T	0.108	194	0%	165	23%	0	-	benign(0)	tolerated(0.89)	-	NULL
RTTN	25914	genome.wustl.edu	37	18	67816255	67816255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173630.3	-1	validated	p.D731N	1.000	504	0%	369	24.7%	3	0%	possibly_damaging(0.952)	tolerated(0.39)	neutral(0.412)	superfamily_ARM repeat
NETO1	81832	genome.wustl.edu	37	18	70451127	70451127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138966.2	-1	reviewed	p.F218L	1.000	270	0%	169	24.3%	0	-	benign(0.14)	deleterious(0.02)	neutral(0.395)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NETO1	81832	genome.wustl.edu	37	18	70526208	70526208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138966.2	-1	reviewed	p.F108V	1.000	139	0%	145	25.5%	0	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FBXO15	201456	genome.wustl.edu	37	18	71796803	71796803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001142958.1	-1	reviewed	p.K208Q	0.935	197	0%	135	20%	0	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72344952	72344952	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017757.2	+1	reviewed	p.Q659	0.475	140	0%	100	28%	0	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72346340	72346340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017757.2	+1	reviewed	p.R1122I	0.008	123	0%	70	22.9%	0	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72347067	72347067	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017757.2	+1	reviewed	p.K1364	1.000	290	0%	206	31.1%	0	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72347472	72347472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017757.2	+1	reviewed	p.Q1499H	1.000	66	0%	36	19.4%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ1	10194	genome.wustl.edu	37	18	73000152	73000152	+	Silent	SNP	G	G	A	rs145714683	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005786.4	+1	reviewed	p.S885	1.000	54	0%	45	28.9%	11	27.2%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389
C18orf62	284274	genome.wustl.edu	37	18	73130845	73130845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037331.2	-1	provisional	p.F52L	0.001	183	0%	146	28.8%	0	-	benign(0.009)	-	-	NULL
ZNF236	7776	genome.wustl.edu	37	18	74622023	74622023	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007345.3	+1	validated	e15-1	1.000	168	0%	162	25.9%	0	-	-	-	-	-
ATP9B	374868	genome.wustl.edu	37	18	76914503	76914503	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198531.3	+1	validated	e7-1	1.000	452	0%	234	25.2%	0	-	-	-	-	-
ATP9B	374868	genome.wustl.edu	37	18	77090038	77090038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198531.3	+1	validated	p.F654L	0.957	89	0%	70	31.4%	6	83.3%	benign(0.17)	tolerated(0.12)	neutral(0.276)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
C19orf21	126353	genome.wustl.edu	37	19	758354	758354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173481.2	+1	predicted	p.L470I	0.000	54	0%	64	20.3%	15	46.6%	possibly_damaging(0.832)	tolerated(0.49)	neutral(0.328)	NULL
POLR2E	5434	genome.wustl.edu	37	19	1091827	1091827	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002695.3	-1	reviewed	p.I104	0.981	10	0%	14	50%	436	43.8%	-	-	-	superfamily_RNA_pol_Rpb5_N
AP3D1	8943	genome.wustl.edu	37	19	2121230	2121230	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003938.5	-1	validated	p.D394	0.994	24	0%	26	26.9%	58	31%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
ZNF556	80032	genome.wustl.edu	37	19	2877593	2877593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024967.1	+1	provisional	p.L213I	0.019	92	0%	112	33.9%	0	-	benign(0.01)	tolerated(0.69)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TLE6	79816	genome.wustl.edu	37	19	2993570	2993570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143986.1	+1	validated	p.F509L	1.000	37	0%	40	22.5%	13	7.6%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ANKRD24	170961	genome.wustl.edu	37	19	4219723	4219723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133475.1	+1	provisional	p.A1047T	1.000	49	0%	43	30.2%	2	100%	possibly_damaging(0.888)	tolerated(0.65)	neutral(0.350)	NULL
FSD1	79187	genome.wustl.edu	37	19	4306218	4306218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024333.2	+1	reviewed	p.E45D	1.000	54	0%	85	37.6%	0	-	benign(0.071)	tolerated(0.09)	neutral(0.301)	HMMSmart_BBC
ARRDC5	645432	genome.wustl.edu	37	19	4902817	4902817	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080523.1	-1	provisional	p.I21	0.079	82	0%	104	27.9%	0	-	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
SAFB	6294	genome.wustl.edu	37	19	5654384	5654384	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002967.2	+1	reviewed	p.R558*	0.493	278	0%	316	25.6%	47	10.6%	-	-	-	superfamily_SSF54928
LONP1	9361	genome.wustl.edu	37	19	5711811	5711811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004793.2	-1	reviewed	p.E281K	1.000	40	0%	42	28.6%	78	33.3%	benign(0.023)	tolerated(0.19)	neutral(0.051)	HMMPfam_LON,HMMSmart_LON
VMAC	400673	genome.wustl.edu	37	19	5908922	5908922	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017921.3	+1	validated	p.L93	0.280	22	0%	28	32.1%	6	50%	-	-	-	NULL
RFX2	5990	genome.wustl.edu	37	19	6016224	6016224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000635.3	-1	reviewed	p.S219Y	1.000	49	0%	45	42.2%	0	-	possibly_damaging(0.796)	deleterious(0)	deleterious(0.744)	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
C3	718	genome.wustl.edu	37	19	6707518	6707518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000064.2	-1	reviewed	p.R669Q	0.072	17	0%	20	40%	367	25.8%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TRIP10	9322	genome.wustl.edu	37	19	6743844	6743844	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004240.2	+1	validated	p.F213	0.998	126	0%	172	29.7%	27	22.2%	-	-	-	NULL
VAV1	7409	genome.wustl.edu	37	19	6825086	6825086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005428.2	+1	reviewed	p.R226L	0.988	243	0%	182	20.3%	1	0%	benign(0.008)	tolerated(0.21)	neutral(0.044)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,superfamily_Calponin-homology
EMR1	2015	genome.wustl.edu	37	19	6908776	6908776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001974.3	+1	reviewed	p.S372Y	0.037	301	0%	288	29.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Family A G protein-coupled receptor-like
EMR1	2015	genome.wustl.edu	37	19	6928286	6928286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000381404	+1	known	p.D735Y	0.001	165	0%	180	33.3%	0	-	probably_damaging(0.976)	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR4P	326342	genome.wustl.edu	37	19	6977332	6977332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000359590	-1	known	p.E192D	0.004	106	0%	83	27.7%	0	-	-	-	-	NULL
ZNF557	79230	genome.wustl.edu	37	19	7083365	7083365	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001044387.1	+1	validated	p.F301	0.814	142	0%	147	29.3%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF557	79230	genome.wustl.edu	37	19	7083376	7083376	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001044387.1	+1	validated	p.S305*	0.003	140	0%	154	19.5%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RETN	56729	genome.wustl.edu	37	19	7734706	7734706	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020415.2	+1	reviewed	e2-1	0.797	38	0%	59	18.6%	0	-	-	-	-	-
CD209	30835	genome.wustl.edu	37	19	7809840	7809840	+	Missense_Mutation	SNP	C	C	A	rs187051357	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021155.3	-1	reviewed	p.S296I	0.001	122	0%	190	30.5%	0	-	possibly_damaging(0.744)	deleterious(0)	deleterious(0.718)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
FBN3	84467	genome.wustl.edu	37	19	8152996	8152996	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032447.3	-1	reviewed	p.F2148	1.000	37	0%	32	25%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN3	84467	genome.wustl.edu	37	19	8173063	8173063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032447.3	-1	reviewed	p.I1560V	1.000	208	0%	149	22.8%	0	-	probably_damaging(0.98)	tolerated(0.35)	neutral(0.445)	NULL
FBN3	84467	genome.wustl.edu	37	19	8188378	8188378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032447.3	-1	reviewed	p.A1018T	1.000	19	0%	26	34.6%	0	-	possibly_damaging(0.523)	tolerated(0.27)	neutral(0.210)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
FBN3	84467	genome.wustl.edu	37	19	8206888	8206888	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032447.3	-1	reviewed	p.C225	1.000	15	0%	40	30%	0	-	-	-	-	HMMPfam_TB,superfamily_TB module/8-cys domain
CERS4	79603	genome.wustl.edu	37	19	8321901	8321901	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024552.2	+1	validated	p.N227	1.000	143	0%	104	26.9%	43	16.2%	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
ADAMTS10	81794	genome.wustl.edu	37	19	8651564	8651564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030957.2	-1	reviewed	p.P761S	0.983	49	0%	52	19.2%	3	0%	benign(0.422)	deleterious(0.01)	deleterious(0.542)	HMMPfam_ADAM_spacer1
ACTL9	284382	genome.wustl.edu	37	19	8807937	8807937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178525.3	-1	validated	p.A372D	0.715	25	0%	38	18.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MUC16	94025	genome.wustl.edu	37	19	9049134	9049134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.P10833S	0.000	709	0.3%	958	30.2%	4	100%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9061944	9061944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.S8501Y	0.000	288	0%	543	26.3%	6	50%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9069047	9069047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.I6133M	0.001	134	0%	250	35.6%	6	50%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9072555	9072555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.P4964Q	0.000	339	0%	477	31.2%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9076660	9076660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.D3596Y	0.001	286	0%	371	10.5%	4	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9082646	9082646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.L3057I	0.014	293	0%	212	28.8%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9083556	9083556	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.A2753	0.005	297	0%	300	27.3%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9086155	9086155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024690.2	-1	validated	p.S1887Y	0.011	205	0%	223	32.3%	0	-	unknown(0)	-	-	NULL
ZNF317	57693	genome.wustl.edu	37	19	9272050	9272050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020933.3	+1	provisional	p.V577M	0.499	138	0%	164	26.8%	11	9%	possibly_damaging(0.688)	tolerated(0.14)	deleterious(0.495)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF699	374879	genome.wustl.edu	37	19	9408153	9408153	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198535.1	-1	provisional	p.F97V	0.001	72	0%	93	30.1%	0	-	benign(0.071)	tolerated(0.5)	neutral(0.015)	NULL
ZNF559	84527	genome.wustl.edu	37	19	9449979	9449979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.K48N	0.014	307	0%	412	31.6%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF559	84527	genome.wustl.edu	37	19	9452459	9452459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.R111I	0.000	210	0%	196	24%	0	-	benign(0.114)	tolerated(0.16)	neutral(0.068)	superfamily_SSF57667
ZNF559	84527	genome.wustl.edu	37	19	9452785	9452785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.E220K	0.055	271	0%	263	36.9%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF559	84527	genome.wustl.edu	37	19	9452909	9452909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.R261I	0.002	268	0%	209	23.9%	1	0%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF559	84527	genome.wustl.edu	37	19	9453497	9453497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.R457I	0.350	178	0%	145	27.6%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF559	84527	genome.wustl.edu	37	19	9453633	9453633	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032497.1	+1	provisional	p.F502	0.009	167	0%	192	30.2%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF177	7730	genome.wustl.edu	37	19	9491877	9491877	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003451.2	+1	validated	p.G130	0.998	180	0.6%	147	31.3%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577344	9577344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152476.2	-1	validated	p.R760I	0.111	224	0%	222	33.8%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577428	9577428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152476.2	-1	validated	p.R732Q	0.003	260	0.4%	246	30.9%	0	-	benign(0.423)	deleterious(0.03)	deleterious(0.502)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9578016	9578016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152476.2	-1	validated	p.R536Q	0.047	224	0%	221	31.7%	0	-	benign(0.075)	tolerated(0.07)	neutral(0.324)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF121	7675	genome.wustl.edu	37	19	9677049	9677049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008727.2	-1	validated	p.F247C	0.005	221	0%	233	37.8%	1	100%	possibly_damaging(0.719)	deleterious(0.02)	deleterious(0.643)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF121	7675	genome.wustl.edu	37	19	9677735	9677735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008727.2	-1	validated	p.E18D	0.182	110	0%	137	32.8%	3	100%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
COL5A3	50509	genome.wustl.edu	37	19	10114391	10114391	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015719.3	-1	reviewed	e6-1	0.812	81	0%	101	36.6%	0	-	-	-	-	-
RAVER1	125950	genome.wustl.edu	37	19	10428163	10428163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000331131	-1	known	p.R603Q	0.907	16	0.000	9	0.444	30	40%	unknown(0)	-	-	NULL
TYK2	7297	genome.wustl.edu	37	19	10472850	10472850	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003331.4	-1	reviewed	p.S559	1.000	16	0%	29	34.5%	23	30.4%	-	-	-	superfamily_SSF55550
DNM2	1785	genome.wustl.edu	37	19	10886411	10886411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005360.1	+1	reviewed	p.I140V	1.000	207	0%	342	32.2%	74	48.6%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA4	6597	genome.wustl.edu	37	19	11100016	11100016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128849.1	+1	reviewed	p.R381Q	1.000	41	0%	44	38.6%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK6	57572	genome.wustl.edu	37	19	11313309	11313309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020812.2	-1	validated	p.Y1771C	1.000	82	0%	95	31.6%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RGL3	57139	genome.wustl.edu	37	19	11515870	11515870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001035223.2	-1	validated	p.F380V	1.000	105	0%	148	27%	14	42.8%	possibly_damaging(0.714)	deleterious(0)	deleterious(0.703)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ACP5	54	genome.wustl.edu	37	19	11687914	11687914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001111034.1	-1	reviewed	p.F73L	1.000	32	0%	54	31.5%	83	2.4%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	HMMPfam_Metallophos,superfamily_SSF56300
ZNF627	199692	genome.wustl.edu	37	19	11727949	11727949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145295.3	+1	validated	p.R211C	0.000	30	0%	55	32.7%	2	50%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF441	126068	genome.wustl.edu	37	19	11891848	11891848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152355.2	+1	validated	p.F403L	0.000	133	0%	158	30.4%	0	-	benign(0.005)	tolerated(0.66)	neutral(0.003)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF491	126069	genome.wustl.edu	37	19	11917544	11917544	+	Missense_Mutation	SNP	G	G	A	rs186336457	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152356.3	+1	validated	p.R259Q	0.002	169	0%	162	27.8%	0	-	possibly_damaging(0.809)	tolerated(0.84)	neutral(0.305)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917992	11917992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152356.3	+1	validated	p.E408D	0.695	101	0%	112	36.6%	0	-	benign(0.012)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
ZNF700	90592	genome.wustl.edu	37	19	12059732	12059732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144566.1	+1	provisional	p.R298I	0.779	147	0%	159	23.3%	0	-	possibly_damaging(0.584)	tolerated(0.08)	deleterious(0.501)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF433	163059	genome.wustl.edu	37	19	12125782	12125782	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080411.1	-1	provisional	p.R634*	0.000	171	0%	187	31%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF433	163059	genome.wustl.edu	37	19	12126118	12126118	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080411.1	-1	provisional	p.R522*	0.000	249	0.4%	201	30.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF136	7695	genome.wustl.edu	37	19	12298008	12298008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003437.2	+1	validated	p.R272I	1.000	207	0%	181	29.8%	0	-	possibly_damaging(0.468)	tolerated(0.14)	neutral(0.403)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287841	100287841	genome.wustl.edu	37	19	12358792	12358792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343641.1	-1	model	p.R308I	0.000	44	0%	47	27.7%	0	-	benign(0.016)	tolerated(0.44)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF44	51710	genome.wustl.edu	37	19	12383415	12383415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016264.3	-1	validated	p.R552M	0.370	85	0%	116	19.8%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429769	12429769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145276.2	-1	validated	p.R357Q	0.981	309	0%	389	31.4%	3	0%	possibly_damaging(0.921)	deleterious(0.02)	deleterious(0.754)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12461221	12461221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030824.2	-1	validated	p.R393Q	0.003	664	0.2%	568	27.6%	1	100%	probably_damaging(0.986)	tolerated(0.61)	neutral(0.439)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461473	12461473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030824.2	-1	validated	p.R309Q	0.000	637	0.2%	616	37.3%	0	-	benign(0.151)	tolerated(0.51)	neutral(0.022)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF709	163051	genome.wustl.edu	37	19	12575093	12575093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152601.3	-1	validated	p.R548Q	0.000	442	0%	334	26.9%	1	100%	possibly_damaging(0.681)	tolerated(0.73)	neutral(0.244)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576017	12576017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152601.3	-1	validated	p.R240Q	0.000	216	0.5%	204	28.4%	0	-	possibly_damaging(0.528)	tolerated(0.68)	neutral(0.180)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF490	57474	genome.wustl.edu	37	19	12691589	12691589	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020714.2	-1	validated	p.R434*	0.000	256	0%	353	34.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF791	163049	genome.wustl.edu	37	19	12739234	12739234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153358.2	+1	validated	p.E297D	0.999	146	0%	169	21.9%	0	-	possibly_damaging(0.873)	deleterious(0.04)	deleterious(0.688)	superfamily_SSF57667
MAN2B1	4125	genome.wustl.edu	37	19	12757477	12757477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000528.3	-1	reviewed	p.R998H	1.000	52	0%	71	22.5%	428	24%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2B1	4125	genome.wustl.edu	37	19	12758346	12758346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000528.3	-1	reviewed	p.E911K	0.000	42	0%	59	28.8%	329	23.1%	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2B1	4125	genome.wustl.edu	37	19	12774641	12774641	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000528.3	-1	reviewed	p.F213	0.840	51	0%	51	41.2%	9	55.5%	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
GCDH	2639	genome.wustl.edu	37	19	13008529	13008529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000159.2	+1	reviewed	p.E365D	0.939	128	0%	99	34.3%	20	35%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
NFIX	4784	genome.wustl.edu	37	19	13201123	13201123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002501.2	+1	validated	p.R422Q	1.000	52	0%	57	22.8%	33	39.3%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
CACNA1A	773	genome.wustl.edu	37	19	13419322	13419322	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127222.1	-1	reviewed	p.F563	0.935	41	0%	33	21.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13446664	13446664	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001127222.1	-1	reviewed	p.I346	0.978	69	0%	62	21%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GIPC1	10755	genome.wustl.edu	37	19	14591507	14591507	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005716.2	-1	validated	p.F124	0.963	54	0%	72	34.7%	248	44.7%	-	-	-	superfamily_PDZ
CLEC17A	388512	genome.wustl.edu	37	19	14707965	14707965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207390.2	+1	validated	p.R196Q	0.004	56	0%	55	27.3%	0	-	benign(0.071)	tolerated(0.11)	neutral(0.277)	NULL
EMR3	84658	genome.wustl.edu	37	19	14743818	14743818	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032571.3	-1	reviewed	p.L520V	0.245	85	0%	97	21.6%	0	-	probably_damaging(0.99)	tolerated(0.22)	deleterious(0.483)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR3	84658	genome.wustl.edu	37	19	14749127	14749127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032571.3	-1	reviewed	p.A425V	0.018	103	0%	80	28.7%	0	-	benign(0.097)	tolerated(0.67)	neutral(0.010)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR3	84658	genome.wustl.edu	37	19	14752279	14752279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000443157	-1	known	p.S368F	1.000	66	0%	48	31.2%	0	-	-	-	-	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829464	14829464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032433.2	+1	validated	p.R442I	0.970	313	0%	281	17.1%	3	0%	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR7C1	26664	genome.wustl.edu	37	19	14910306	14910306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198944.1	-1	validated	p.F215V	0.000	212	0.5%	256	34%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_SSF81321
OR7A5	26659	genome.wustl.edu	37	19	14938836	14938836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017506.1	-1	validated	p.V73A	0.000	537	0%	579	32%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7A17	26333	genome.wustl.edu	37	19	14991649	14991649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030901.1	-1	provisional	p.E173D	0.118	217	0%	339	33.6%	0	-	possibly_damaging(0.585)	deleterious(0.04)	deleterious(0.550)	HMMPfam_7tm_1,superfamily_SSF81321
OR7C2	26658	genome.wustl.edu	37	19	15052948	15052948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012377.1	+1	provisional	p.F216L	0.459	213	0%	271	32.8%	0	-	benign(0.01)	tolerated(0.38)	neutral(0.018)	HMMPfam_7tm_1,superfamily_SSF81321
OR7C2	26658	genome.wustl.edu	37	19	15053121	15053121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012377.1	+1	provisional	p.S274L	0.255	192	0%	252	27.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC105	126402	genome.wustl.edu	37	19	15132169	15132169	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173482.2	+1	validated	p.C293	0.868	34	0%	47	14.9%	0	-	-	-	-	NULL
ILVBL	10994	genome.wustl.edu	37	19	15226687	15226687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006844.3	-1	reviewed	p.E530K	1.000	40	0%	35	20%	63	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPP_enzyme_C,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
BRD4	23476	genome.wustl.edu	37	19	15366193	15366193	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_058243.2	-1	reviewed	p.I654	0.330	93	0%	58	27.6%	28	50%	-	-	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15651326	15651326	+	Missense_Mutation	SNP	G	G	A	rs184021211	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173483.3	+1	reviewed	p.R246H	0.005	79	0%	87	26.4%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F22	126410	genome.wustl.edu	37	19	15654966	15654966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173483.3	+1	reviewed	p.D338N	1.000	184	0%	194	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F8	11283	genome.wustl.edu	37	19	15728823	15728823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000441682	+1	known	p.E71K	0.653	62	0%	68	23.5%	0	-	benign(0.111)	tolerated(0.12)	neutral(0.269)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F8	11283	genome.wustl.edu	37	19	15739592	15739592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000441682	+1	known	p.D445N	0.995	117	0%	119	23.5%	0	-	benign(0.195)	tolerated(0.38)	neutral(0.036)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F3	4051	genome.wustl.edu	37	19	15757898	15757898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000896.2	+1	reviewed	p.F127C	0.357	177	0%	224	27.2%	0	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F12	66002	genome.wustl.edu	37	19	15791167	15791167	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000430608	+1	known	p.L153	0.000	75	0%	67	26.9%	0	-	-	-	-	NULL
CYP4F12	66002	genome.wustl.edu	37	19	15795949	15795949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023944.2	+1	reviewed	p.R353C	0.909	141	0%	170	29.4%	2	100%	possibly_damaging(0.48)	deleterious(0.01)	deleterious(0.565)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F12	66002	genome.wustl.edu	37	19	15806987	15806987	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023944.2	+1	reviewed	p.I422	0.026	223	0%	323	27.6%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
ENSG00000225607	0	genome.wustl.edu	37	19	15890551	15890551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000412610	-1	known	p.Q57H	0.066	45	0%	24	29.2%	0	-	-	-	-	superfamily_Cytochrome P450
HSH2D	84941	genome.wustl.edu	37	19	16268097	16268097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000253680	+1	known	p.K184N	0.001	84	0%	101	18.8%	4	0%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
CHERP	10523	genome.wustl.edu	37	19	16631231	16631231	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006387.5	-1	validated	p.S763	0.840	26	0%	25	28%	45	60%	-	-	-	NULL
SLC35E1	79939	genome.wustl.edu	37	19	16664577	16664577	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024881.4	-1	validated	p.Y382	0.882	55	0%	80	30%	11	9%	-	-	-	NULL
SIN3B	23309	genome.wustl.edu	37	19	16963954	16963954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015260.1	+1	provisional	p.F308L	0.997	37	0%	26	50%	0	-	benign(0.221)	tolerated(0.48)	neutral(0.033)	superfamily_PAH2 domain
CPAMD8	27151	genome.wustl.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015692.2	-1	validated	p.R568C	0.032	37	0%	40	35%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_A2M_N_2
HAUS8	93323	genome.wustl.edu	37	19	17170822	17170822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033417.1	-1	validated	p.L104I	0.996	82	0%	134	14.9%	13	53.8%	possibly_damaging(0.892)	tolerated(0.3)	neutral(0.380)	NULL
MYO9B	4650	genome.wustl.edu	37	19	17311121	17311121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004145.3	+1	reviewed	p.F1420L	0.998	30	0%	33	39.4%	1	0%	benign(0.005)	tolerated(0.56)	neutral(0.006)	NULL
FCHO1	23149	genome.wustl.edu	37	19	17893968	17893968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015122.2	+1	validated	p.D694N	0.942	49	0%	75	33.3%	26	42.3%	benign(0.03)	tolerated(0.06)	neutral(0.324)	HMMPfam_SAFF
FCHO1	23149	genome.wustl.edu	37	19	17898630	17898630	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015122.2	+1	validated	p.S874	0.114	9	0.000	22	0.364	41	29.2%	-	-	-	NULL
ARRDC2	27106	genome.wustl.edu	37	19	18119563	18119563	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015683.1	+1	validated	p.F106	1.000	35	0%	31	22.6%	24	20.8%	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
TMEM59L	25789	genome.wustl.edu	37	19	18726786	18726786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012109.2	+1	reviewed	p.R137I	0.847	31	0%	35	40%	0	-	possibly_damaging(0.912)	tolerated(0.05)	deleterious(0.709)	NULL
SUGP2	10147	genome.wustl.edu	37	19	19115365	19115365	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017392.3	-1	reviewed	p.P847	0.000	138	0%	126	38.1%	29	55.1%	-	-	-	NULL
NCAN	1463	genome.wustl.edu	37	19	19360650	19360650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004386.2	+1	validated	p.R1299H	0.000	43	0%	115	47%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TM6SF2	53345	genome.wustl.edu	37	19	19375598	19375598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001524.2	-1	validated	p.F337V	0.044	41	0%	56	25%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
TM6SF2	53345	genome.wustl.edu	37	19	19380882	19380882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000431465	-1	known	p.R190I	0.001	19	0%	15	46.7%	0	-	unknown(0)	-	-	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790292	19790292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033204.2	+1	provisional	p.R165Q	0.919	149	0%	273	26%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_SSF57667
ZNF506	440515	genome.wustl.edu	37	19	19905663	19905663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099269.2	-1	validated	p.E345K	0.535	179	0%	174	32.2%	0	-	benign(0.387)	deleterious(0.02)	deleterious(0.507)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF506	440515	genome.wustl.edu	37	19	19906415	19906415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099269.2	-1	validated	p.S94Y	0.000	114	0%	111	17.1%	0	-	benign(0.058)	deleterious(0.05)	neutral(0.349)	NULL
ZNF93	81931	genome.wustl.edu	37	19	20026119	20026119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031218.3	+1	validated	p.E12*	0.039	655	0%	466	23.6%	2	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF90	7643	genome.wustl.edu	37	19	20216089	20216089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007138.1	+1	validated	p.T64A	0.001	590	0.2%	318	30.5%	2	50%	benign(0.323)	tolerated(0.75)	neutral(0.103)	HMMSmart_KRAB
ENSG00000213985	0	genome.wustl.edu	37	19	20368578	20368578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000397155	+1	known	p.F17Y	1.000	47	0%	38	13.2%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ENSG00000213985	0	genome.wustl.edu	37	19	20370147	20370147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000397155	+1	known	p.D370Y	1.000	73	0%	70	12.9%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ZNF66P	7617	genome.wustl.edu	37	19	20975394	20975394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000425625	+1	known	p.N73S	0.273	355	0%	266	32%	1	100%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF85	7639	genome.wustl.edu	37	19	21132895	21132895	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003429.3	+1	validated	p.L525	0.155	182	0%	162	16.7%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21366549	21366549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133473.2	+1	validated	p.E481D	1.000	321	0%	356	20.5%	0	-	benign(0.017)	tolerated(0.12)	neutral(0.261)	superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21606093	21606093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001076678.2	+1	validated	p.R211Q	0.031	243	0%	271	32.1%	0	-	benign(0.005)	tolerated(0.28)	neutral(0.032)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21607744	21607744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001076678.2	+1	validated	p.I761M	0.517	137	0%	134	32.1%	0	-	benign(0.044)	deleterious(0.04)	neutral(0.351)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21910188	21910188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173531.3	-1	validated	p.R309I	0.931	200	0%	236	31.4%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992001	21992001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003423.2	-1	validated	p.R280C	0.991	247	0%	276	32.6%	0	-	benign(0.017)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992125	21992125	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003423.2	-1	validated	p.V238	0.024	205	0%	198	27.3%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF257	113835	genome.wustl.edu	37	19	22270857	22270857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033468.2	+1	provisional	p.R102I	0.005	126	0%	153	25.5%	0	-	possibly_damaging(0.657)	deleterious(0.02)	deleterious(0.615)	NULL
ZNF257	113835	genome.wustl.edu	37	19	22270879	22270879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033468.2	+1	provisional	p.E109D	0.285	117	0%	160	28.7%	0	-	benign(0.008)	tolerated(0.34)	neutral(0.023)	NULL
ZNF257	113835	genome.wustl.edu	37	19	22271725	22271725	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033468.2	+1	provisional	p.K391	1.000	127	0%	183	28.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22362861	22362861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001411.2	-1	provisional	p.R553I	0.885	360	0.3%	308	29.5%	0	-	benign(0.176)	tolerated(0.26)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF676	163223	genome.wustl.edu	37	19	22364033	22364033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001411.2	-1	provisional	p.I162M	0.088	381	0%	314	23.2%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22496698	22496698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343636.1	+1	model	p.M27T	0.000	43	0%	46	28.3%	0	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22496705	22496705	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343636.1	+1	model	p.V29	0.000	43	0%	44	29.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22496808	22496808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343636.1	+1	model	p.R64*	0.000	30	0%	27	14.8%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574641	22574641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098626.1	-1	validated	p.E466*	0.004	320	0%	327	12.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22575422	22575422	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098626.1	-1	validated	p.S205R	0.934	144	0%	129	38%	0	-	benign(0.092)	deleterious(0.01)	neutral(0.413)	superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22585636	22585636	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001098626.1	-1	validated	p.E70*	0.046	409	0%	404	19.1%	0	-	-	-	-	HMMSmart_SM00349
LOC440518	440518	genome.wustl.edu	37	19	22780139	22780139	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_041921.2	+1	model	NULL	0.209	62	0%	88	30.7%	0	-	-	-	-	-
ENSG00000213974	0	genome.wustl.edu	37	19	22786092	22786092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000397112	+1	known	p.D181Y	0.756	18	0%	28	39.3%	0	-	-	-	-	NULL
ZNF492	57615	genome.wustl.edu	37	19	22847809	22847809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020855.2	+1	validated	p.E446D	0.776	251	0%	237	36.3%	0	-	benign(0.015)	deleterious(0.02)	neutral(0.384)	superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22940594	22940594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080409.1	-1	provisional	p.K615T	0.017	408	0%	462	24.5%	0	-	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC646864	646864	genome.wustl.edu	37	19	23031100	23031100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726885.1	+1	model	p.S43Y	0.183	208	0%	213	15.5%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC646864	646864	genome.wustl.edu	37	19	23040208	23040208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726885.1	+1	model	p.S201Y	0.718	87	0%	97	33%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040439	23040439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726885.1	+1	model	p.R278I	0.987	214	0%	243	36.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040539	23040539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726885.1	+1	model	p.E311D	1.000	173	0%	233	29.6%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040607	23040607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726885.1	+1	model	p.R334I	0.995	215	0%	304	15.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23158143	23158143	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726961.1	-1	model	p.K619	0.009	61	0%	37	32.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159468	23159468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001726961.1	-1	model	p.G224E	0.997	301	0%	261	26.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF730	100129543	genome.wustl.edu	37	19	23328241	23328241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001719792.2	+1	model	p.R174I	0.001	54	0%	33	30.3%	0	-	benign(0.023)	tolerated(0.2)	neutral(0.050)	NULL
ZNF724P	440519	genome.wustl.edu	37	19	23406735	23406735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418100	-1	known	p.E104D	0.002	62	0%	71	29.6%	0	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	NULL
ZNF91	7644	genome.wustl.edu	37	19	23543832	23543832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003430.2	-1	validated	p.R650I	0.974	344	0.9%	355	27.9%	0	-	unknown(0)	tolerated(0.19)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100131479	100131479	genome.wustl.edu	37	19	23779741	23779741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001719802.1	+1	model	p.S155Y	0.045	41	0%	32	15.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23837169	23837169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138330.2	-1	validated	p.R189Q	0.000	127	0%	123	10.6%	1	0%	benign(0.003)	tolerated(1)	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF726	730087	genome.wustl.edu	37	19	24115410	24115410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000322487	+1	known	p.K164N	0.976	55	0%	50	44%	0	-	possibly_damaging(0.625)	tolerated(0.22)	neutral(0.260)	superfamily_C2H2 and C2HC zinc fingers
ZNF726	730087	genome.wustl.edu	37	19	24116244	24116244	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000322487	+1	known	p.E442D	0.800	217	0%	177	33.3%	0	-	benign(0.007)	tolerated(0.46)	neutral(0.012)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310052	24310052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203282.2	+1	validated	p.R417Q	0.029	286	0%	294	46.3%	3	100%	benign(0.234)	tolerated(0.45)	neutral(0.036)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310358	24310358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203282.2	+1	validated	p.K519R	0.182	480	0%	503	25.4%	3	33.3%	possibly_damaging(0.765)	tolerated(0.05)	deleterious(0.629)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCNE1	898	genome.wustl.edu	37	19	30303907	30303907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001238.1	+1	reviewed	p.K48T	1.000	38	0%	35	20%	5	40%	possibly_damaging(0.532)	tolerated(0.26)	neutral(0.214)	NULL
URI1	8725	genome.wustl.edu	37	19	30496308	30496308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003796.2	+1	reviewed	p.K136N	1.000	136	0%	104	26.9%	4	25%	possibly_damaging(0.931)	tolerated(0.19)	neutral(0.427)	HMMPfam_Prefoldin,superfamily_Prefoldin
URI1	8725	genome.wustl.edu	37	19	30499948	30499948	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003796.2	+1	reviewed	p.T241	0.000	108	0%	61	26.2%	37	51.3%	-	-	-	NULL
URI1	8725	genome.wustl.edu	37	19	30505958	30505958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003796.2	+1	reviewed	p.R530S	0.998	690	0%	424	22.6%	13	7.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32845208	32845208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136156.1	+1	validated	p.R491Q	0.993	132	0%	139	21.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32873797	32873797	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136156.1	+1	validated	p.S890	0.921	122	0%	153	22.9%	0	-	-	-	-	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33096837	33096837	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032139.2	-1	validated	p.S799	0.000	71	0%	50	18%	2	50%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD27	84079	genome.wustl.edu	37	19	33140596	33140596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032139.2	-1	validated	p.N69H	0.989	80	0%	99	20.2%	0	-	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	NULL
SLC7A9	11136	genome.wustl.edu	37	19	33353113	33353113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001126335.1	-1	reviewed	p.K205N	0.924	100	0%	81	21%	1	0%	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_AA_permease
GPATCH1	55094	genome.wustl.edu	37	19	33617535	33617535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018025.2	+1	provisional	p.K887N	1.000	93	0%	109	29.4%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
RPS4XP21	126235	genome.wustl.edu	37	19	34513780	34513780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000334591	-1	known	p.R191I	1.000	53	0%	39	30.8%	0	-	-	-	-	NULL
LSM14A	26065	genome.wustl.edu	37	19	34699863	34699863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001114093.1	+1	validated	p.E149K	1.000	81	0%	79	24.1%	57	47.3%	benign(0.022)	tolerated(0.5)	neutral(0.011)	NULL
PDCD2L	84306	genome.wustl.edu	37	19	34900381	34900381	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032346.1	+1	provisional	p.E218*	1.000	81	0%	95	25.3%	8	0%	-	-	-	HMMPfam_PDCD2_C
ZNF302	55900	genome.wustl.edu	37	19	35175465	35175465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012320.1	+1	validated	p.N175H	0.616	180	0%	183	38.3%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
ZNF181	339318	genome.wustl.edu	37	19	35232274	35232274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029997.3	+1	validated	p.F330V	0.999	120	0%	126	27.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF181	339318	genome.wustl.edu	37	19	35232812	35232812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001029997.3	+1	validated	p.R509I	0.999	113	0%	126	25.4%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LGI4	163175	genome.wustl.edu	37	19	35616231	35616231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139284.2	-1	validated	p.L494M	1.000	17	0%	20	30%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FFAR3	2865	genome.wustl.edu	37	19	35862721	35862721	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000246538	+1	known	p.E154*	0.020	58	0%	48	16.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SBSN	374897	genome.wustl.edu	37	19	36018884	36018884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198538.3	-1	validated	p.E100D	0.000	64	0%	81	28.4%	3	66.6%	possibly_damaging(0.887)	tolerated(0.61)	neutral(0.351)	NULL
ATP4A	495	genome.wustl.edu	37	19	36050924	36050924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000704.2	-1	reviewed	p.R280H	1.000	124	0%	173	34.7%	0	-	benign(0.314)	deleterious(0.03)	neutral(0.463)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
UPK1A	11045	genome.wustl.edu	37	19	36166745	36166745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007000.2	+1	reviewed	p.E158*	0.984	15	0%	24	45.8%	0	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
MLL4	9757	genome.wustl.edu	37	19	36221616	36221616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014727.1	+1	reviewed	p.R1762H	1.000	46	0%	63	38.1%	3	66.6%	probably_damaging(0.978)	-	-	HMMPfam_FYRN,HMMSmart_SM00541
C19orf55	148137	genome.wustl.edu	37	19	36258938	36258938	+	Frame_Shift_Del	DEL	G	G	-	rs139446374	byCluster;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039887.1	+1	predicted	p.G398fs	0.903	-	-	-	-	-	-	-	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36334378	36334378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004646.3	-1	reviewed	p.R777I	0.970	277	0%	206	20.9%	0	-	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TBCB	1155	genome.wustl.edu	37	19	36607038	36607038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001281.2	+1	validated	p.E70D	0.997	43	0%	59	18.6%	218	32.1%	benign(0)	tolerated(0.91)	-	superfamily_SSF54236
ZNF565	147929	genome.wustl.edu	37	19	36685205	36685205	+	Silent	SNP	G	G	A	rs139103330	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042474.1	-1	validated	p.V54	0.993	40	0%	47	19.1%	0	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF146	7705	genome.wustl.edu	37	19	36727929	36727929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099638.1	+1	validated	p.R196Q	0.863	170	0%	215	24.2%	21	9.5%	benign(0.039)	tolerated(0.24)	neutral(0.040)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP14	57677	genome.wustl.edu	37	19	36831826	36831826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020917.1	-1	provisional	p.R301H	0.000	314	0%	246	15.4%	0	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP14	57677	genome.wustl.edu	37	19	36832145	36832145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020917.1	-1	provisional	p.T195A	1.000	324	0%	291	30.2%	0	-	benign(0.058)	deleterious(0.04)	neutral(0.352)	superfamily_SSF57667
ZFP14	57677	genome.wustl.edu	37	19	36832459	36832459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020917.1	-1	provisional	p.S90Y	0.995	196	0%	136	25%	0	-	possibly_damaging(0.8)	tolerated(1)	neutral(0.301)	NULL
ZFP82	284406	genome.wustl.edu	37	19	36883749	36883749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133466.2	-1	provisional	p.R498I	1.000	195	0.5%	206	33%	0	-	possibly_damaging(0.818)	deleterious(0)	deleterious(0.754)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF260	339324	genome.wustl.edu	37	19	37005705	37005706	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001012756.2	-1	validated	p.N145fs	0.019:0.055	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF529	57711	genome.wustl.edu	37	19	37038298	37038298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145649.1	-1	validated	p.H388N	1.000	408	0%	436	27.3%	1	100%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF529	57711	genome.wustl.edu	37	19	37038767	37038767	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145649.1	-1	validated	p.E231	0.803	232	0%	200	29.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF529	57711	genome.wustl.edu	37	19	37038923	37038923	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145649.1	-1	validated	p.V179	0.000	217	0%	153	24.2%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37117073	37117073	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032825.3	+1	validated	p.E92*	0.361	137	0%	144	31.9%	0	-	-	-	-	NULL
ZNF382	84911	genome.wustl.edu	37	19	37118082	37118082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032825.3	+1	validated	p.R428I	1.000	200	0%	250	30.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37118166	37118166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032825.3	+1	validated	p.R456I	1.000	234	0%	233	26.2%	1	100%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37618315	37618315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144689.3	+1	provisional	p.C141Y	0.998	171	0%	180	25%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585A	199704	genome.wustl.edu	37	19	37642535	37642535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152655.2	-1	validated	p.V701I	0.035	294	0%	368	32.9%	0	-	possibly_damaging(0.751)	tolerated(0.41)	neutral(0.291)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585A	199704	genome.wustl.edu	37	19	37643003	37643003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152655.2	-1	validated	p.H545N	1.000	436	0%	435	21.1%	2	50%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37903864	37903864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152484.2	-1	validated	p.N566D	0.465	246	0%	318	25.8%	0	-	benign(0.033)	tolerated(0.1)	neutral(0.288)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF570	148268	genome.wustl.edu	37	19	37975736	37975736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144694.1	+1	provisional	p.H404Q	0.996	289	0%	279	17.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF793	390927	genome.wustl.edu	37	19	38028286	38028286	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013659.2	+1	validated	p.F242	0.038	41	0%	64	23.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38103793	38103793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152606.3	+1	validated	p.L538I	0.013	289	0%	244	16.8%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP30	22835	genome.wustl.edu	37	19	38125985	38125985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014898.2	-1	validated	p.R486K	1.000	183	0%	170	27.1%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP30	22835	genome.wustl.edu	37	19	38127119	38127119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014898.2	-1	validated	p.R108I	0.821	159	0%	168	35.7%	0	-	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	NULL
ZNF781	163115	genome.wustl.edu	37	19	38160892	38160892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152605.3	-1	validated	p.R53Q	0.001	289	0%	292	25.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38189206	38189206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032689.4	-1	validated	p.R609I	1.000	142	0%	193	12.4%	0	-	benign(0.38)	deleterious(0.03)	deleterious(0.486)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38189264	38189264	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032689.4	-1	validated	p.E590*	0.024	116	0%	147	33.3%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38189879	38189879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032689.4	-1	validated	p.G385S	0.988	262	0%	359	19.2%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38190046	38190046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032689.4	-1	validated	p.R329I	0.996	373	0%	461	25.4%	0	-	benign(0.38)	deleterious(0)	deleterious(0.566)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF573	126231	genome.wustl.edu	37	19	38230606	38230606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152360.3	-1	validated	p.R204I	0.002	317	0%	431	27.6%	0	-	possibly_damaging(0.683)	tolerated(0.51)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KCNK6	9424	genome.wustl.edu	37	19	38817923	38817923	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004823.1	+1	reviewed	p.P274	0.000	14	0%	51	25.5%	21	19%	-	-	-	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38851131	38851131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000215069	+1	known	p.S493Y	1.000	72	0%	92	23.9%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
RYR1	6261	genome.wustl.edu	37	19	38956907	38956907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.R1016Q	1.000	31	0%	43	20.9%	0	-	probably_damaging(0.968)	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	38959988	38959988	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.H1200	0.997	85	0%	100	23%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR1	6261	genome.wustl.edu	37	19	39025374	39025374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.E3758D	1.000	29	0%	37	32.4%	0	-	probably_damaging(0.992)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39033991	39033991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.F3898L	1.000	141	0%	171	23.4%	0	-	probably_damaging(0.962)	-	-	HMMPfam_RIH_assoc
RYR1	6261	genome.wustl.edu	37	19	39058516	39058516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.E4540K	1.000	65	0%	87	27.6%	0	-	unknown(0)	-	-	HMMPfam_RR_TM4-6
RYR1	6261	genome.wustl.edu	37	19	39061315	39061315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000540.2	+1	reviewed	p.F4576L	1.000	137	0%	157	24.2%	0	-	unknown(0)	-	-	HMMPfam_RR_TM4-6
EIF3K	27335	genome.wustl.edu	37	19	39123130	39123130	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013234.2	+1	validated	p.R139*	1.000	91	0%	128	14.1%	389	0.7%	-	-	-	"HMMPfam_SAC3_GANP,superfamily_""Winged helix"" DNA-binding domain"
SYCN	342898	genome.wustl.edu	37	19	39694552	39694552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080468.2	-1	provisional	p.R115C	0.702	9	0.000	18	0.278	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PAF1	54623	genome.wustl.edu	37	19	39880164	39880164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019088.2	-1	provisional	p.E105D	1.000	57	0%	37	21.6%	20	15%	probably_damaging(0.972)	deleterious(0.04)	deleterious(0.763)	HMMPfam_Paf1
SUPT5H	6829	genome.wustl.edu	37	19	39949490	39949490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001111020.2	+1	validated	p.D118Y	1.000	112	0%	160	11.9%	31	12.9%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39964630	39964630	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001111020.2	+1	validated	p.F840	1.000	219	0%	232	27.6%	187	52.4%	-	-	-	NULL
DYRK1B	9149	genome.wustl.edu	37	19	40317936	40317936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004714.1	-1	reviewed	p.E362*	1.000	45	0%	53	22.6%	11	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK1B	9149	genome.wustl.edu	37	19	40321396	40321396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004714.1	-1	reviewed	p.R31W	0.906	38	0%	34	23.5%	11	9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF546	339327	genome.wustl.edu	37	19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178544.3	+1	validated	p.R349I	1.000	160	0%	141	31.9%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF780B	163131	genome.wustl.edu	37	19	40540685	40540685	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000331800	-1	known	p.R110*	1.000	405	0%	435	26%	0	-	benign(0.013)	tolerated(0.07)	neutral(0.320)	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40542143	40542143	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005851.2	-1	validated	p.L208R	0.071	293	0%	318	19.5%	0	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPTBN4	57731	genome.wustl.edu	37	19	41008082	41008082	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020971.2	+1	reviewed	p.E315	1.000	25	0%	34	29.4%	0	-	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
SPTBN4	57731	genome.wustl.edu	37	19	41038566	41038566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020971.2	+1	reviewed	p.A1328V	1.000	72	0%	95	33.7%	0	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
LTBP4	8425	genome.wustl.edu	37	19	41123099	41123099	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042544.1	+1	reviewed	p.T1080M	1.000	11	0%	18	44.4%	19	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
CYP2A6	1548	genome.wustl.edu	37	19	41354259	41354259	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000762.5	-1	reviewed	p.F173	1.000	152	0%	125	34.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2A6	1548	genome.wustl.edu	37	19	41354520	41354520	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000762.5	-1	reviewed	p.G164	0.000	48	0%	59	28.8%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2A7	1549	genome.wustl.edu	37	19	41382433	41382433	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000764.2	-1	reviewed	p.I434	0.993	178	0%	169	20.1%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450
CYP2B7P1	1556	genome.wustl.edu	37	19	41444969	41444969	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_001278.1	+1	provisional	NULL	0.000	121	0%	123	26%	0	-	-	-	-	-
CYP2B7P1	1556	genome.wustl.edu	37	19	41450344	41450344	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_001278.1	+1	provisional	NULL	1.000	158	0%	161	24.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
CYP2A13	1553	genome.wustl.edu	37	19	41600325	41600325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000766.3	+1	reviewed	p.F383L	0.239	74	0%	102	26.5%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A13	1553	genome.wustl.edu	37	19	41600885	41600885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000766.3	+1	reviewed	p.L395M	1.000	217	0%	193	12.4%	0	-	benign(0.122)	deleterious(0.02)	neutral(0.393)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A13	1553	genome.wustl.edu	37	19	41601774	41601774	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000766.3	+1	reviewed	p.I471	0.721	95	0%	93	35.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
AXL	558	genome.wustl.edu	37	19	41748850	41748850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021913.3	+1	reviewed	p.V459M	0.993	64	0%	81	24.7%	7	0%	possibly_damaging(0.801)	tolerated(0.1)	deleterious(0.588)	NULL
ENSG00000229113	0	genome.wustl.edu	37	19	42027564	42027564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000439847	-1	known	p.S240Y	0.366	285	0%	294	29.6%	2	0%	-	-	-	NULL
ENSG00000229113	0	genome.wustl.edu	37	19	42027855	42027855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000439847	-1	known	p.E143D	0.015	159	0%	178	23.6%	0	-	-	-	-	NULL
CEACAM6	4680	genome.wustl.edu	37	19	42266025	42266025	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002483.4	+1	validated	p.L284	0.989	184	0%	120	28.3%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LYPD4	147719	genome.wustl.edu	37	19	42343090	42343090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173506.4	-1	validated	p.A26T	0.569	118	0%	162	26.5%	0	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
LYPD4	147719	genome.wustl.edu	37	19	42343317	42343317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173506.4	-1	validated	p.L15I	0.891	93	0%	140	24.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ATP1A3	478	genome.wustl.edu	37	19	42473718	42473718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152296.3	-1	reviewed	p.L853F	0.989	104	0%	198	33.8%	0	-	benign(0.087)	tolerated(0.24)	neutral(0.044)	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
GRIK5	2901	genome.wustl.edu	37	19	42563671	42563671	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002088.3	-1	reviewed	p.R173*	1.000	69	0%	141	29.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
POU2F2	5452	genome.wustl.edu	37	19	42599544	42599544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002698.2	-1	validated	p.R326H	1.000	35	0%	19	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
MEGF8	1954	genome.wustl.edu	37	19	42854409	42854409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001410.2	+1	validated	p.A803V	0.971	17	0%	27	37%	2	100%	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1
LIPE	3991	genome.wustl.edu	37	19	42911583	42911583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005357.2	-1	reviewed	p.G627D	0.997	18	0%	28	46.4%	4	25%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	superfamily_alpha/beta-Hydrolases
PSG4	5672	genome.wustl.edu	37	19	43708205	43708205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002780.3	-1	validated	p.R88I	0.000	998	0%	1083	31.9%	6	0%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PSG9	5678	genome.wustl.edu	37	19	43763081	43763081	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002784.3	-1	validated	p.G306*	0.980	375	0%	406	23.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CADM4	199731	genome.wustl.edu	37	19	44127538	44127538	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145296.1	-1	validated	p.E371*	1.000	151	0%	202	19.3%	48	31.2%	-	-	-	NULL
PLAUR	5329	genome.wustl.edu	37	19	44153254	44153254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002659.2	-1	reviewed	p.A266T	0.268	50	2%	76	30.3%	859	49.3%	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
ZNF404	342908	genome.wustl.edu	37	19	44376937	44376938	+	Frame_Shift_Ins	INS	-	-	A	rs76311065	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033719.2	-1	validated	p.R476fs	0.002:0.604	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF221	7638	genome.wustl.edu	37	19	44470827	44470827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013359.2	+1	validated	p.E391D	1.000	273	0%	289	29.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_C2H2 and C2HC zinc fingers
ZNF230	7773	genome.wustl.edu	37	19	44515209	44515209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006300.3	+1	validated	p.E340*	0.005	283	0%	234	23.5%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF284	342909	genome.wustl.edu	37	19	44586167	44586167	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037813.2	+1	provisional	p.G48	0.001	206	0%	232	19.4%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF224	7767	genome.wustl.edu	37	19	44611935	44611935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013398.2	+1	validated	p.N541T	0.000	305	0%	216	31.5%	6	66.6%	possibly_damaging(0.466)	deleterious(0.03)	deleterious(0.517)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF224	7767	genome.wustl.edu	37	19	44612040	44612040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013398.2	+1	validated	p.R576I	0.005	295	0%	204	32.8%	3	33.3%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44677088	44677088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001032372.1	+1	validated	p.R73Q	0.002	45	0%	31	25.8%	1	100%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
ZNF226	7769	genome.wustl.edu	37	19	44681795	44681795	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001032372.1	+1	validated	p.E794*	0.765	101	0%	106	29.2%	1	0%	-	-	-	NULL
ZNF227	7770	genome.wustl.edu	37	19	44739210	44739210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182490.1	+1	provisional	p.K209N	0.000	157	0%	112	36.6%	1	0%	probably_damaging(0.958)	tolerated(0.5)	neutral(0.412)	NULL
ZFP112	7771	genome.wustl.edu	37	19	44831743	44831743	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083335.1	-1	validated	p.K862T	0.001	324	0%	364	21.4%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP112	7771	genome.wustl.edu	37	19	44833374	44833374	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001083335.1	-1	validated	p.L318	0.001	187	0%	142	39.4%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44891009	44891009	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152354.3	-1	validated	p.A466	0.000	202	0%	154	25.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44892202	44892202	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152354.3	-1	validated	p.E69*	0.161	256	0%	153	28.8%	0	-	-	-	-	NULL
ZNF229	7772	genome.wustl.edu	37	19	44933081	44933081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014518.2	-1	validated	p.E625D	1.000	196	0%	201	32.3%	0	-	possibly_damaging(0.899)	deleterious(0.01)	deleterious(0.762)	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981076	44981076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013256.3	-1	validated	p.R541I	1.000	599	0%	442	33.7%	1	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981412	44981412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013256.3	-1	validated	p.R429I	1.000	546	0%	401	26.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981496	44981496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013256.3	-1	validated	p.R401I	1.000	523	0%	364	12.4%	3	33.3%	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CEACAM19	56971	genome.wustl.edu	37	19	45186731	45186731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020219.3	+1	validated	p.A291V	0.998	13	0%	10	60%	3	66.6%	possibly_damaging(0.711)	tolerated(0.11)	deleterious(0.528)	NULL
BCAM	4059	genome.wustl.edu	37	19	45322117	45322117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005581.3	+1	reviewed	p.Q438H	0.731	58	0%	108	24.1%	217	35.9%	possibly_damaging(0.496)	tolerated(0.06)	deleterious(0.488)	superfamily_SSF48726
ERCC1	2067	genome.wustl.edu	37	19	45924573	45924573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_202001.2	-1	reviewed	p.E62K	0.966	67	0%	132	31.1%	63	31.7%	possibly_damaging(0.611)	deleterious(0.03)	deleterious(0.576)	NULL
PPM1N	147699	genome.wustl.edu	37	19	46002433	46002433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080401.1	+1	provisional	p.D235N	0.998	14	0%	15	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
OPA3	80207	genome.wustl.edu	37	19	46032560	46032560	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017989.2	-1	reviewed	p.L99	1.000	68	0%	133	27.8%	2	0%	-	-	-	HMMPfam_OPA3
PRKD2	25865	genome.wustl.edu	37	19	47178365	47178365	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079880.1	-1	reviewed	p.L783	1.000	44	0%	77	36.4%	172	33.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP35	2909	genome.wustl.edu	37	19	47422387	47422387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004491.4	+1	reviewed	p.D152G	1.000	133	0%	107	36.4%	1	0%	benign(0.055)	deleterious(0.01)	neutral(0.409)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX34	9704	genome.wustl.edu	37	19	47856439	47856439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014681.5	+1	reviewed	p.R51H	1.000	62	0%	124	27.4%	0	-	probably_damaging(0.974)	tolerated(0.07)	deleterious(0.735)	NULL
ENSG00000245602	0	genome.wustl.edu	37	19	47998565	47998565	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000500835	+1	known	NULL	0.001	16	0%	10	40%	0	-	-	-	-	-
LIG1	3978	genome.wustl.edu	37	19	48626528	48626528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000234.1	-1	reviewed	p.E684D	1.000	20	0%	37	45.9%	38	34.2%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_DNA_ligase_A_M,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
CARD8	22900	genome.wustl.edu	37	19	48733712	48733712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014959.3	-1	reviewed	p.D234N	0.053	185	0%	205	27.8%	13	46.1%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
LMTK3	114783	genome.wustl.edu	37	19	48989036	48989036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080434.1	-1	provisional	p.E1488D	1.000	16	0%	25	32%	4	50%	unknown(0)	deleterious(0)	-	NULL
NUCB1	4924	genome.wustl.edu	37	19	49407646	49407646	+	Missense_Mutation	SNP	G	G	A	rs185346087	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006184.5	+1	reviewed	p.D60N	0.989	20	0%	21	33.3%	120	38.3%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
FTL	2512	genome.wustl.edu	37	19	49469878	49469878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000146.3	+1	reviewed	p.E138D	1.000	116	0%	115	26.1%	5665	34.5%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like,PatternScan_FERRITIN_2
PPFIA3	8541	genome.wustl.edu	37	19	49643285	49643285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003660.2	+1	reviewed	p.L770I	0.999	171	0%	177	16.9%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
TEAD2	8463	genome.wustl.edu	37	19	49850530	49850530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003598.1	-1	provisional	p.D276N	1.000	83	1.2%	92	28.3%	29	37.9%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_TEA
ALDH16A1	126133	genome.wustl.edu	37	19	49967136	49967136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153329.3	+1	reviewed	p.S375L	0.000	118	0%	199	30.2%	62	27.4%	probably_damaging(0.963)	tolerated(0.08)	deleterious(0.706)	HMMPfam_Aldedh,superfamily_ALDH-like
TSKS	60385	genome.wustl.edu	37	19	50245277	50245277	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021733.1	-1	reviewed	p.S454	1.000	41	0%	69	29%	0	-	-	-	-	NULL
SIGLEC11	114132	genome.wustl.edu	37	19	50463969	50463969	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000426971	-1	known	p.G90E	0.000	97	0%	102	16.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF473	25888	genome.wustl.edu	37	19	50547943	50547943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001006656.1	+1	validated	p.K81N	0.001	134	0%	164	21.3%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
LOC100287477	100287477	genome.wustl.edu	37	19	50563046	50563046	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343656.1	-1	model	p.E205*	0.000	24	0%	36	30.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYBPC2	4606	genome.wustl.edu	37	19	50957549	50957549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004533.3	+1	validated	p.R646H	0.965	59	0%	108	24.1%	13	7.6%	benign(0.043)	tolerated(0.05)	neutral(0.348)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SHANK1	50944	genome.wustl.edu	37	19	51175333	51175333	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016148.2	-1	validated	p.Y872	0.889	13	0%	16	43.8%	0	-	-	-	-	NULL
KLK15	55554	genome.wustl.edu	37	19	51329967	51329967	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017509.2	-1	reviewed	p.S176	0.000	217	0%	262	34%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK8	11202	genome.wustl.edu	37	19	51503695	51503695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144505.1	-1	reviewed	p.A117V	1.000	56	0%	105	30.5%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS
SIGLEC8	27181	genome.wustl.edu	37	19	51958774	51958774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014442.2	-1	validated	p.R317*	0.000	24	0%	37	29.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52001489	52001489	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053003.2	-1	reviewed	p.S396	0.284	44	0%	47	29.8%	8	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52003462	52003462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053003.2	-1	reviewed	p.L174I	0.001	137	0%	152	27.6%	0	-	benign(0.125)	tolerated(0.41)	neutral(0.026)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52091068	52091068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007147.2	+1	validated	p.R495L	0.994	162	0%	163	27%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287831	100287831	genome.wustl.edu	37	19	52249969	52249969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343694.1	+1	model	p.E183K	0.889	202	0%	210	26.7%	8	0%	-	-	-	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394796	52394796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023074.3	-1	validated	p.R198I	0.001	420	0%	360	26.1%	2	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF613	79898	genome.wustl.edu	37	19	52447907	52447907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031721.3	+1	validated	p.E257D	0.999	313	0%	320	34.7%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52496986	52496986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198480.2	-1	provisional	p.R448L	0.126	134	0%	130	25.4%	0	-	probably_damaging(0.975)	tolerated(0.3)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF432	9668	genome.wustl.edu	37	19	52537418	52537418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014650.2	-1	provisional	p.R505Q	1.000	237	0%	180	37.8%	3	33.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52537833	52537833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014650.2	-1	provisional	p.H367N	1.000	403	0%	274	29.2%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52538418	52538418	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014650.2	-1	provisional	p.E172*	0.000	167	0%	88	17%	0	-	-	-	-	NULL
ZNF841	284371	genome.wustl.edu	37	19	52568469	52568469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136499.1	-1	validated	p.R889H	0.000	82	0%	71	23.9%	5	60%	probably_damaging(0.99)	tolerated(0.57)	neutral(0.448)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52568865	52568865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136499.1	-1	validated	p.R757I	0.403	68	0%	71	35.2%	3	0%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52570090	52570090	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136499.1	-1	validated	p.E349*	0.298	86	0%	76	26.3%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619131	52619131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178523.3	-1	validated	p.R429I	0.002	313	0%	331	33.8%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659012	52659012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102657.1	-1	provisional	p.E642K	0.035	312	0%	321	24.9%	0	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659776	52659776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001102657.1	-1	provisional	p.K387T	0.005	97	0%	140	32.1%	2	0%	benign(0.183)	tolerated(0.1)	neutral(0.303)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF766	90321	genome.wustl.edu	37	19	52793496	52793496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010851.2	+1	validated	p.R151I	0.006	145	0%	182	47.3%	0	-	benign(0.07)	tolerated(0.29)	neutral(0.034)	superfamily_C2H2 and C2HC zinc fingers
ZNF766	90321	genome.wustl.edu	37	19	52794000	52794000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010851.2	+1	validated	p.R319I	0.004	55	0%	79	16.5%	1	0%	benign(0.393)	tolerated(0.37)	neutral(0.145)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825339	52825339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144684.2	+1	validated	p.R279I	0.145	149	0%	152	28.9%	0	-	possibly_damaging(0.951)	tolerated(0.12)	deleterious(0.655)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825423	52825423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144684.2	+1	validated	p.R307I	0.000	169	0%	226	29.2%	0	-	possibly_damaging(0.802)	tolerated(0.13)	deleterious(0.554)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825759	52825759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144684.2	+1	validated	p.R419I	0.001	176	0%	251	33.5%	0	-	benign(0.012)	tolerated(0.06)	neutral(0.323)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825984	52825984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144684.2	+1	validated	p.R494Q	0.000	183	0%	217	28.6%	1	0%	possibly_damaging(0.547)	tolerated(0.33)	neutral(0.209)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF880	400713	genome.wustl.edu	37	19	52887921	52887921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001145434.1	+1	validated	p.R363Q	0.000	132	0%	142	21.1%	0	-	benign(0.056)	tolerated(1)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52918687	52918687	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032423.2	+1	validated	p.V194	0.002	211	0%	174	17.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52918941	52918941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032423.2	+1	validated	p.R279Q	0.001	225	0%	215	34.9%	0	-	possibly_damaging(0.874)	tolerated(0.11)	deleterious(0.611)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52919872	52919872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032423.2	+1	validated	p.K589N	0.000	130	0%	133	28.6%	1	0%	benign(0.043)	tolerated(0.57)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF534	147658	genome.wustl.edu	37	19	52937238	52937238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143939.1	+1	validated	p.E16*	0.997	220	0%	194	16.5%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF578	147660	genome.wustl.edu	37	19	53013992	53013992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099694.1	+1	validated	p.D120Y	0.007	404	0%	438	24.2%	0	-	possibly_damaging(0.925)	tolerated(0.17)	neutral(0.432)	NULL
ZNF578	147660	genome.wustl.edu	37	19	53015142	53015142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099694.1	+1	validated	p.R503K	0.225	292	0%	282	22%	0	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53116792	53116792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001105549.1	-1	validated	p.E342D	1.000	732	0%	506	24.9%	9	11.1%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209139	53209139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030972.3	-1	validated	p.R390I	0.999	421	0%	352	27.6%	0	-	possibly_damaging(0.701)	tolerated(0.12)	deleterious(0.512)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209626	53209626	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030972.3	-1	validated	p.E228*	0.891	629	0%	532	32.3%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53269063	53269063	+	Missense_Mutation	SNP	C	C	T	rs192291135	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198457.2	-1	validated	p.R649H	0.000	521	0%	472	24.8%	3	0%	probably_damaging(0.997)	tolerated(0.61)	deleterious(0.470)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53270941	53270941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198457.2	-1	validated	p.R23I	0.004	903	0%	780	30%	0	-	benign(0.419)	deleterious(0.05)	deleterious(0.481)	NULL
ZNF28	7576	genome.wustl.edu	37	19	53303622	53303622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006969.2	-1	validated	p.E439D	1.000	318	0%	357	15.4%	0	-	benign(0.028)	deleterious(0.01)	neutral(0.407)	superfamily_SSF57667
ZNF320	162967	genome.wustl.edu	37	19	53384558	53384558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207333.2	-1	validated	p.K274T	0.010	411	0%	426	22.5%	2	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC388559	388559	genome.wustl.edu	37	19	53410587	53410587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_496322.5	-1	model	p.E312*	0.000	186	0%	108	22.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53669096	53669096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024733.3	-1	provisional	p.T216N	0.000	274	0.4%	241	18.7%	0	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF677	342926	genome.wustl.edu	37	19	53740251	53740251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182609.2	-1	provisional	p.K577E	0.001	52	0%	65	36.9%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
BIRC8	112401	genome.wustl.edu	37	19	53793241	53793241	+	Missense_Mutation	SNP	C	C	A	rs71363320	byCluster;byFrequency	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033341.3	-1	validated	p.K129N	0.990	334	0%	274	23.7%	0	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	superfamily_Inhibitor of apoptosis (IAP) repeat
ZNF845	91664	genome.wustl.edu	37	19	53854464	53854464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138374.1	+1	validated	p.R179I	0.204	203	0%	237	26.6%	0	-	benign(0.254)	tolerated(0.31)	neutral(0.053)	NULL
ZNF845	91664	genome.wustl.edu	37	19	53855064	53855064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138374.1	+1	validated	p.G379E	1.000	215	0%	259	27.4%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53855609	53855609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138374.1	+1	validated	p.R561C	0.001	178	0%	168	26.8%	1	0%	probably_damaging(0.974)	tolerated(0.05)	deleterious(0.761)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53856832	53856832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138374.1	+1	validated	p.K968N	0.896	104	0%	91	26.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_C2H2 and C2HC zinc fingers
ZNF765	91661	genome.wustl.edu	37	19	53911764	53911764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001040185.1	+1	provisional	p.R319I	0.129	306	0%	349	30.1%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF761	388561	genome.wustl.edu	37	19	53959136	53959136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008401.3	+1	validated	p.R459C	0.000	283	0%	247	15.8%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF813	126017	genome.wustl.edu	37	19	53995086	53995086	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004301.3	+1	validated	p.R534*	0.001	264	0.4%	250	23.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MIR523	574471	genome.wustl.edu	37	19	54201686	54201686	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385281	+1	known	NULL	0.015	91	0%	101	15.8%	0	-	-	-	-	-
MIR518C	574477	genome.wustl.edu	37	19	54212045	54212045	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000384822	+1	known	NULL	0.020	228	0%	201	21.9%	0	-	-	-	-	-
MIR520D	574482	genome.wustl.edu	37	19	54223397	54223397	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385002	+1	known	NULL	0.009	379	0%	340	25.6%	0	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54313903	54313903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144687.2	-1	reviewed	p.S337Y	0.061	94	0%	79	21.5%	0	-	probably_damaging(0.967)	tolerated(0.19)	neutral(0.458)	HMMPfam_NACHT
LILRB2	10288	genome.wustl.edu	37	19	54783780	54783780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005874.3	-1	reviewed	p.R74Q	0.000	110	0%	104	26.9%	6	0%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LAIR1	3903	genome.wustl.edu	37	19	54872711	54872711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002287.3	-1	reviewed	p.R59H	0.118	164	0%	121	28.9%	5	0%	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMSmart_SM00409,superfamily_Immunoglobulin
KIR3DL3	115653	genome.wustl.edu	37	19	55247323	55247323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153443.3	+1	reviewed	p.R364I	0.000	471	0%	525	29.3%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
KIR2DL3	3804	genome.wustl.edu	37	19	55255474	55255474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015868.2	+1	reviewed	p.S201Y	0.002	966	0%	1296	22.1%	0	-	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	HMMSmart_SM00409,superfamily_Immunoglobulin
KIR3DL1	3811	genome.wustl.edu	37	19	55331236	55331236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013289.2	+1	reviewed	p.L142M	0.043	538	0%	827	23.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NCR1	9437	genome.wustl.edu	37	19	55424082	55424082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004829.5	+1	validated	p.A253V	0.002	391	0%	376	25.5%	0	-	benign(0.022)	tolerated(0.6)	neutral(0.005)	NULL
NCR1	9437	genome.wustl.edu	37	19	55424405	55424405	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_027041.1	+1	validated	NULL	0.000	36	2.8%	28	42.9%	3	0%	-	-	-	-
NLRP2	55655	genome.wustl.edu	37	19	55493795	55493795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017852.3	+1	validated	p.F243L	0.196	50	0%	77	27.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRH	5794	genome.wustl.edu	37	19	55697724	55697724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002842.3	-1	validated	p.L883I	0.983	34	0%	41	39%	2	100%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PPP6R1	22870	genome.wustl.edu	37	19	55756960	55756960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014931.3	-1	validated	p.R105Q	0.779	14	0%	16	25%	18	33.3%	possibly_damaging(0.626)	tolerated(0.17)	neutral(0.277)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243505	56243505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176820.2	-1	reviewed	p.F564L	0.056	193	0%	225	22.7%	0	-	benign(0.041)	tolerated(0.85)	neutral(0.003)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243998	56243998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176820.2	-1	reviewed	p.A400V	0.089	283	0%	468	28.4%	0	-	benign(0.078)	tolerated(0.49)	neutral(0.016)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244557	56244557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176820.2	-1	reviewed	p.E214K	0.000	105	0%	152	36.8%	0	-	benign(0.056)	deleterious(0.04)	neutral(0.352)	HMMPfam_NACHT
NLRP9	338321	genome.wustl.edu	37	19	56249463	56249463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176820.2	-1	reviewed	p.R93I	0.000	722	0.1%	956	28.5%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_DEATH domain
NLRP4	147945	genome.wustl.edu	37	19	56369885	56369885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_134444.4	+1	validated	p.V376I	0.000	82	0%	79	11.4%	0	-	benign(0)	tolerated(1)	-	NULL
NLRP13	126204	genome.wustl.edu	37	19	56407319	56407319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176810.2	-1	validated	p.L1042I	0.000	655	0%	523	21.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52047
NLRP13	126204	genome.wustl.edu	37	19	56410298	56410298	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176810.2	-1	validated	p.S932*	0.003	249	0%	193	13%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52047
NLRP13	126204	genome.wustl.edu	37	19	56424650	56424650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176810.2	-1	validated	p.R178I	0.016	233	0%	181	28.7%	0	-	probably_damaging(0.996)	tolerated(0.33)	deleterious(0.486)	NULL
NLRP8	126205	genome.wustl.edu	37	19	56466589	56466589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_176811.2	+1	provisional	p.L389I	0.483	188	0%	166	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP5	126206	genome.wustl.edu	37	19	56538817	56538817	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153447.4	+1	reviewed	p.I406	0.000	24	0%	28	32.1%	0	-	-	-	-	HMMPfam_NACHT,superfamily_SSF52540
ZSCAN5A	79149	genome.wustl.edu	37	19	56733492	56733492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024303.1	-1	provisional	p.E315K	0.006	92	0%	168	37.5%	2	0%	benign(0.086)	tolerated(0.41)	neutral(0.021)	NULL
LOC646698	646698	genome.wustl.edu	37	19	56758571	56758571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001725568.1	+1	model	p.R400Q	0.946	31	0%	51	23.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000197025	0	genome.wustl.edu	37	19	56889229	56889229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000356456	+1	known	p.R205I	0.014	13	0.000	9	0.556	9	44.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF583	147949	genome.wustl.edu	37	19	56935071	56935071	+	Silent	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152478.2	+1	validated	p.G348	0.777	341	0%	303	25.4%	2	0%	-	-	-	superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56954107	56954107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022103.3	-1	validated	p.S86L	0.000	224	0%	153	22.2%	0	-	benign(0)	tolerated(0.91)	-	NULL
ZNF471	57573	genome.wustl.edu	37	19	57027674	57027674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020813.2	+1	validated	p.D22Y	0.117	276	0%	267	30.7%	0	-	possibly_damaging(0.697)	tolerated(0.1)	deleterious(0.536)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF471	57573	genome.wustl.edu	37	19	57036400	57036400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020813.2	+1	validated	p.E322*	0.716	220	0%	236	30.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP28	140612	genome.wustl.edu	37	19	57065912	57065912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020828.1	+1	provisional	p.E586D	0.997	310	0%	286	31.5%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_SSF57667
ZFP28	140612	genome.wustl.edu	37	19	57066064	57066064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020828.1	+1	provisional	p.R637I	0.941	247	0%	237	28.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57088297	57088297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001668.3	+1	validated	p.L167R	0.000	126	0%	133	28.6%	0	-	possibly_damaging(0.586)	tolerated(0.36)	neutral(0.222)	NULL
PEG3	5178	genome.wustl.edu	37	19	57325989	57325989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006210.2	-1	reviewed	p.R1274I	0.901	190	0%	182	21.4%	0	-	possibly_damaging(0.76)	deleterious(0.02)	deleterious(0.664)	superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57327439	57327439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006210.2	-1	reviewed	p.H791N	0.041	534	0%	543	29.5%	0	-	possibly_damaging(0.677)	deleterious(0.01)	deleterious(0.647)	NULL
PEG3	5178	genome.wustl.edu	37	19	57327480	57327480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006210.2	-1	reviewed	p.S777F	0.006	587	0%	561	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PEG3	5178	genome.wustl.edu	37	19	57328602	57328602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006210.2	-1	reviewed	p.S403L	0.000	295	0%	260	26.5%	0	-	probably_damaging(0.995)	tolerated(0.16)	deleterious(0.517)	NULL
USP29	57663	genome.wustl.edu	37	19	57641964	57641964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020903.2	+1	validated	p.G641S	0.000	93	0%	115	33.9%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57642036	57642036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020903.2	+1	validated	p.D665Y	0.066	74	0%	87	27.6%	0	-	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	HMMPfam_UCH,superfamily_SSF54001
ZIM3	114026	genome.wustl.edu	37	19	57646580	57646580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052882.1	-1	provisional	p.K375N	0.002	353	0%	439	24.8%	0	-	possibly_damaging(0.436)	deleterious(0.01)	deleterious(0.547)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF264	9422	genome.wustl.edu	37	19	57723831	57723831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003417.4	+1	reviewed	p.E456K	0.001	130	0%	110	26.4%	1	0%	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF304	57343	genome.wustl.edu	37	19	57868101	57868101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020657.2	+1	validated	p.F288L	0.005	261	0%	214	35%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57869092	57869092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020657.2	+1	validated	p.E619K	0.000	263	0%	222	27.9%	2	0%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288507	100288507	genome.wustl.edu	37	19	57955623	57955623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343700.1	-1	model	p.E251K	0.000	502	0%	435	26%	1	0%	-	-	-	NULL
ZNF749	388567	genome.wustl.edu	37	19	57956278	57956278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001023561.2	+1	provisional	p.E588*	0.027	567	0%	460	31.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF773	374928	genome.wustl.edu	37	19	58018351	58018351	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198542.1	+1	provisional	p.I296	0.152	447	0%	594	13.1%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049504	58049504	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153263.1	+1	provisional	p.R365*	0.000	189	0%	145	34.5%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049696	58049696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153263.1	+1	provisional	p.E429K	1.000	194	0%	168	27.4%	0	-	probably_damaging(0.966)	deleterious(0.05)	deleterious(0.753)	superfamily_C2H2 and C2HC zinc fingers
ZIK1	284307	genome.wustl.edu	37	19	58102389	58102389	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001010879.2	+1	provisional	p.E404*	1.000	204	0%	249	23.3%	0	-	-	-	-	superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
LOC100130710	100130710	genome.wustl.edu	37	19	58152997	58152997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001718544.2	-1	model	p.V199I	0.000	398	0%	222	23.9%	2	0%	-	-	-	NULL
ZSCAN4	201516	genome.wustl.edu	37	19	58187556	58187556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152677.2	+1	validated	p.E15K	0.000	91	0%	98	38.8%	0	-	benign(0.1)	tolerated(1)	neutral(0.007)	NULL
ZSCAN4	201516	genome.wustl.edu	37	19	58187867	58187867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152677.2	+1	validated	p.F118L	0.357	105	0%	130	21.5%	0	-	benign(0.03)	tolerated(0.55)	neutral(0.009)	HMMPfam_SCAN
ZNF551	90233	genome.wustl.edu	37	19	58198232	58198232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138347.3	+1	validated	p.E181K	0.000	122	0%	152	39.5%	0	-	benign(0.156)	tolerated(0.18)	neutral(0.070)	NULL
ZNF671	79891	genome.wustl.edu	37	19	58232407	58232407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024833.2	-1	validated	p.F349L	0.278	112	0%	153	24.8%	0	-	possibly_damaging(0.812)	tolerated(0.41)	neutral(0.321)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF586	54807	genome.wustl.edu	37	19	58290742	58290742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017652.2	+1	validated	p.E263*	0.012	156	0%	228	21.1%	2	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF587	84914	genome.wustl.edu	37	19	58352355	58352355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343662.1	+1	model	p.L105V	0.000	95	0%	107	24.3%	0	-	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF587	84914	genome.wustl.edu	37	19	58353906	58353906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343662.1	+1	model	p.R566C	0.000	117	0%	94	29.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58420279	58420279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152475.2	-1	validated	p.R456I	0.947	503	0%	472	28%	2	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58437519	58437519	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133460.1	-1	provisional	p.*677L	0.006	193	0%	231	19.5%	0	-	-	-	-	NULL
ZNF418	147686	genome.wustl.edu	37	19	58437558	58437558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133460.1	-1	provisional	p.R664Q	0.000	244	0%	311	38.9%	0	-	benign(0.242)	tolerated(0.6)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF256	10172	genome.wustl.edu	37	19	58452702	58452702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005773.2	-1	validated	p.E492*	0.015	200	0%	359	25.3%	2	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58490621	58490621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025027.3	-1	validated	p.R476I	1.000	128	0%	138	26.8%	0	-	possibly_damaging(0.787)	tolerated(0.16)	neutral(0.354)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF329	79673	genome.wustl.edu	37	19	58639288	58639288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024620.3	-1	validated	p.R528Q	0.018	104	0%	112	26.8%	7	0%	probably_damaging(0.971)	tolerated(0.85)	neutral(0.413)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF544	27300	genome.wustl.edu	37	19	58772991	58772991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014480.2	+1	provisional	p.S340Y	0.003	79	0%	77	24.7%	1	0%	possibly_damaging(0.437)	tolerated(0.32)	neutral(0.166)	NULL
A1BG	1	genome.wustl.edu	37	19	58862993	58862993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130786.3	-1	reviewed	p.G225D	0.003	15	0%	17	23.5%	2	50%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF132	7691	genome.wustl.edu	37	19	58946044	58946044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003433.3	-1	validated	p.R256I	0.968	126	0%	184	23.9%	0	-	possibly_damaging(0.806)	tolerated(0.11)	deleterious(0.575)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF132	7691	genome.wustl.edu	37	19	58946102	58946102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003433.3	-1	validated	p.E237K	0.000	110	0%	151	35.1%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC27A5	10998	genome.wustl.edu	37	19	59011972	59011972	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012254.2	-1	reviewed	p.I428	0.931	30	0%	33	18.2%	1	100%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ZCCHC3	85364	genome.wustl.edu	37	20	278996	278996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000382352	+1	known	p.F257L	1.000	58	0%	46	30.4%	33	33.3%	benign(0.02)	tolerated(0.08)	neutral(0.301)	NULL
PSMF1	9491	genome.wustl.edu	37	20	1145707	1145707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006814.3	+1	reviewed	p.D267N	1.000	124	0%	115	27.8%	167	20.9%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
FKBP1A	2280	genome.wustl.edu	37	20	1356160	1356160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000801.3	-1	reviewed	p.R58Q	1.000	94	0%	122	23%	248	30.6%	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	HMMPfam_FKBP_C,superfamily_FKBP-like
SIRPB2	284759	genome.wustl.edu	37	20	1458042	1458042	+	Missense_Mutation	SNP	G	G	T	rs148097564	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122962.1	-1	validated	p.S267Y	0.007	109	0%	173	32.9%	0	-	benign(0.083)	tolerated(0.46)	neutral(0.018)	NULL
SIRPB2	284759	genome.wustl.edu	37	20	1460374	1460374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001122962.1	-1	validated	p.S141L	0.000	241	0%	295	27.1%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPD	128646	genome.wustl.edu	37	20	1532514	1532514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178460.2	-1	validated	p.N82D	0.001	156	0%	123	27.6%	0	-	possibly_damaging(0.642)	tolerated(0.06)	deleterious(0.547)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIRPG	55423	genome.wustl.edu	37	20	1629905	1629905	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018556.3	-1	reviewed	p.E75*	0.000	159	0%	150	35.3%	3	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PDYN	5173	genome.wustl.edu	37	20	1963659	1963659	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024411.2	-1	reviewed	p.S24	0.154	60	0%	52	11.5%	0	-	-	-	-	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR
TGM6	343641	genome.wustl.edu	37	20	2411136	2411136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198994.2	+1	validated	p.D575Y	1.000	205	0%	209	29.7%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains
ZNF343	79175	genome.wustl.edu	37	20	2474441	2474441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024325.4	-1	validated	p.Q34R	0.001	103	0%	84	27.4%	1	100%	unknown(0)	-	-	NULL
TMC2	117532	genome.wustl.edu	37	20	2591073	2591073	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080751.2	+1	validated	p.I474	0.932	155	0%	198	30.3%	0	-	-	-	-	NULL
CPXM1	56265	genome.wustl.edu	37	20	2776015	2776015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019609.4	-1	reviewed	p.V590M	0.996	58	0%	66	30.3%	49	0%	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
FAM113A	64773	genome.wustl.edu	37	20	2820457	2820457	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022760.3	-1	predicted	p.F34	1.000	42	0%	43	14%	9	11.1%	-	-	-	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128273	3128273	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021826.4	-1	validated	p.L482V	0.997	117	0%	139	20.9%	4	25%	benign(0)	tolerated(1)	-	HMMPfam_FAST_1
ITPA	3704	genome.wustl.edu	37	20	3193865	3193865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033453.2	+1	reviewed	p.K39N	0.997	214	0%	223	24.7%	41	48.7%	benign(0.017)	tolerated(0.45)	neutral(0.013)	HMMPfam_Ham1p_like,superfamily_SSF52972
C20orf194	25943	genome.wustl.edu	37	20	3329270	3329270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009984.1	-1	validated	p.D231Y	1.000	185	0%	161	31.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
C20orf194	25943	genome.wustl.edu	37	20	3356833	3356833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009984.1	-1	validated	p.E134K	0.998	50	0%	85	32.9%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
ATRN	8455	genome.wustl.edu	37	20	3553580	3553580	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139321.2	+1	reviewed	p.E692*	1.000	173	0%	176	23.3%	2	0%	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
ATRN	8455	genome.wustl.edu	37	20	3584844	3584844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139321.2	+1	reviewed	p.R1246C	1.000	161	0%	152	25%	1	0%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
ATRN	8455	genome.wustl.edu	37	20	3619484	3619484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_139321.2	+1	reviewed	p.R1318*	1.000	71	0%	84	16.7%	0	-	-	-	-	NULL
SIGLEC1	6614	genome.wustl.edu	37	20	3675550	3675550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_023068.3	-1	reviewed	p.P902S	0.996	10	0%	11	63.6%	2	0%	probably_damaging(0.997)	tolerated(0.43)	deleterious(0.480)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RASSF2	9770	genome.wustl.edu	37	20	4766954	4766954	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014737.2	-1	reviewed	p.F278	0.503	187	0%	146	23.3%	1	0%	-	-	-	NULL
PROKR2	128674	genome.wustl.edu	37	20	5294688	5294688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144773.2	-1	reviewed	p.E110K	0.998	60	0%	84	29.8%	0	-	probably_damaging(0.965)	tolerated(0.87)	neutral(0.407)	HMMPfam_7tm_1,superfamily_SSF81321
GPCPD1	56261	genome.wustl.edu	37	20	5574004	5574004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019593.3	-1	validated	p.R67H	1.000	174	0%	156	17.3%	5	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_CBM_20,superfamily_CBD_4
CHGB	1114	genome.wustl.edu	37	20	5904470	5904470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001819.2	+1	reviewed	p.K560N	0.957	228	0%	233	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Granin
TMX4	56255	genome.wustl.edu	37	20	7963135	7963135	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021156.2	-1	provisional	p.G271	0.061	246	0%	171	25.7%	112	45.5%	-	-	-	NULL
PLCB4	5332	genome.wustl.edu	37	20	9353009	9353009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000933.3	+1	reviewed	p.K215N	1.000	139	0%	136	34.6%	0	-	benign(0.34)	tolerated(0.16)	neutral(0.167)	superfamily_SSF47473
PLCB4	5332	genome.wustl.edu	37	20	9382163	9382163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000933.3	+1	reviewed	p.E513K	0.998	44	0%	48	10.4%	1	0%	benign(0.059)	tolerated(0.26)	neutral(0.038)	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCB4	5332	genome.wustl.edu	37	20	9402041	9402041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000933.3	+1	reviewed	p.R739Q	1.000	112	0%	100	28%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PAK7	57144	genome.wustl.edu	37	20	9546725	9546725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020341.3	-1	reviewed	p.R433W	0.950	89	0%	102	30.4%	0	-	unknown(0)	deleterious(0)	-	superfamily_Kinase_like
ANKRD5	63926	genome.wustl.edu	37	20	10025189	10025189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022096.4	+1	validated	p.D232N	1.000	232	0%	218	27.1%	0	-	possibly_damaging(0.788)	deleterious(0.02)	deleterious(0.678)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SNAP25	6616	genome.wustl.edu	37	20	10273538	10273538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003081.2	+1	reviewed	p.D58N	1.000	286	0%	240	25.8%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMSmart_SM00397
SNAP25	6616	genome.wustl.edu	37	20	10273541	10273541	+	Missense_Mutation	SNP	C	C	T	rs146976467		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003081.2	+1	reviewed	p.R59C	1.000	290	0%	244	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00397
MKKS	8195	genome.wustl.edu	37	20	10386326	10386326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018848.2	-1	reviewed	p.D428N	0.010	77	0%	81	24.7%	10	40%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
C20orf94	128710	genome.wustl.edu	37	20	10601974	10601974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001009608.1	+1	validated	p.L140I	0.908	71	0%	101	31.7%	0	-	probably_damaging(0.981)	tolerated(0.27)	neutral(0.459)	NULL
JAG1	182	genome.wustl.edu	37	20	10621521	10621521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000214.2	-1	reviewed	p.D1037N	1.000	93	0%	83	20.5%	8	0%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	NULL
ESF1	51575	genome.wustl.edu	37	20	13747512	13747512	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016649.3	-1	provisional	p.F526L	1.000	183	0%	197	25.9%	0	-	probably_damaging(0.974)	tolerated(0.34)	neutral(0.439)	NULL
SEL1L2	80343	genome.wustl.edu	37	20	13830147	13830147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025229.1	-1	validated	p.R684I	0.990	253	0%	163	33.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FLRT3	23767	genome.wustl.edu	37	20	14307633	14307633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013281.2	-1	reviewed	p.P174S	1.000	143	0%	183	33.3%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52058
MACROD2	140733	genome.wustl.edu	37	20	15913924	15913924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080676.5	+1	validated	p.E260G	1.000	153	0%	158	23.4%	0	-	unknown(0)	deleterious(0)	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16348013	16348013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000408042	-1	known	p.K1319N	0.000	402	0%	395	21%	4	25%	probably_damaging(0.975)	deleterious(0.05)	deleterious(0.762)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16360693	16360693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024704.3	-1	validated	p.R652C	1.000	220	0%	304	30.3%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16493483	16493483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024704.3	-1	validated	p.R145Q	1.000	103	0%	97	23.7%	1	0%	unknown(0)	deleterious(0.03)	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCSK2	5126	genome.wustl.edu	37	20	17240903	17240903	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002594.2	+1	reviewed	p.L66	1.000	204	0%	247	31.2%	0	-	-	-	-	superfamily_Protease propeptides/inhibitors
BFSP1	631	genome.wustl.edu	37	20	17475108	17475108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001195.3	-1	reviewed	p.I537L	0.000	113	0%	133	24.1%	2	100%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
BFSP1	631	genome.wustl.edu	37	20	17479686	17479686	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001195.3	-1	reviewed	e6-1	1.000	69	0%	70	27.1%	0	-	-	-	-	-
POLR3F	10621	genome.wustl.edu	37	20	18464194	18464194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006466.2	+1	reviewed	p.E315K	0.985	13	0%	26	34.6%	0	-	benign(0.167)	deleterious(0.01)	neutral(0.421)	HMMPfam_RNA_pol_Rpc34
SEC23B	10483	genome.wustl.edu	37	20	18526618	18526618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006363.4	+1	reviewed	p.Y562N	1.000	344	0%	306	25.2%	38	18.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sec23_helical,superfamily_Sec23_helical
SLC24A3	57419	genome.wustl.edu	37	20	19566167	19566167	+	Silent	SNP	C	C	A	rs34060393		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020689.3	+1	validated	p.V197	1.000	294	0%	253	27.3%	0	-	-	-	-	HMMPfam_Na_Ca_ex
NAA20	51126	genome.wustl.edu	37	20	20007508	20007508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016100.3	+1	validated	p.R84*	1.000	392	0%	291	31.6%	52	11.5%	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
C20orf26	26074	genome.wustl.edu	37	20	20066167	20066167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000377297	+1	known	p.R21I	0.020	199	0%	137	16.8%	0	-	unknown(0)	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20147061	20147061	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015585.3	+1	validated	p.F409C	1.000	84	0%	76	22.4%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20172030	20172030	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015585.3	+1	validated	p.Q519H	0.636	216	0%	199	25.1%	0	-	probably_damaging(0.968)	deleterious(0.03)	deleterious(0.774)	superfamily_Acyl-CoA N-acyltransferases (Nat)
C20orf26	26074	genome.wustl.edu	37	20	20257987	20257987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015585.3	+1	validated	p.G894E	0.016	83	0%	68	26.5%	0	-	possibly_damaging(0.807)	tolerated(0.12)	deleterious(0.565)	superfamily_FAD/NAD(P)-binding domain
RALGAPA2	57186	genome.wustl.edu	37	20	20505473	20505473	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020343.2	-1	validated	e29+1	1.000	39	0%	38	15.8%	0	-	-	-	-	-
XRN2	22803	genome.wustl.edu	37	20	21312958	21312958	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012255.3	+1	reviewed	p.P246	0.977	109	0%	103	33%	6	16.6%	-	-	-	HMMPfam_XRN_N
GZF1	64412	genome.wustl.edu	37	20	23350861	23350861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022482.3	+1	validated	p.S640Y	1.000	179	0%	123	61%	4	50%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
CST1	1469	genome.wustl.edu	37	20	23728513	23728513	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001898.2	-1	reviewed	p.I122	0.003	43	0%	45	15.6%	114	14.9%	-	-	-	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
SYNDIG1	79953	genome.wustl.edu	37	20	24523780	24523780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024893.1	+1	provisional	p.I16T	0.442	108	0%	62	21%	2	50%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
DEFB116	245930	genome.wustl.edu	37	20	29891213	29891213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037731.1	-1	provisional	p.W37C	0.702	612	0%	690	23.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TPX2	22974	genome.wustl.edu	37	20	30359423	30359423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012112.4	+1	validated	p.K182N	0.855	225	0%	228	28.5%	3	33.3%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
TPX2	22974	genome.wustl.edu	37	20	30380610	30380610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012112.4	+1	validated	p.R496*	0.995	533	0%	504	22%	24	0%	-	-	-	NULL
MYLK2	85366	genome.wustl.edu	37	20	30409359	30409359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033118.3	+1	reviewed	p.K197N	0.182	21	0%	19	21.1%	0	-	benign(0.155)	tolerated(0.22)	neutral(0.056)	NULL
TTLL9	164395	genome.wustl.edu	37	20	30525265	30525265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008409.2	+1	provisional	p.K357N	1.000	60	0%	69	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL
TM9SF4	9777	genome.wustl.edu	37	20	30730827	30730827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014742.3	+1	validated	p.R191W	1.000	56	0%	59	37.3%	39	46.1%	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	HMMPfam_EMP70
KIF3B	9371	genome.wustl.edu	37	20	30898921	30898921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004798.2	+1	reviewed	p.E447D	1.000	74	0%	110	25.5%	5	20%	possibly_damaging(0.941)	tolerated(0.07)	deleterious(0.706)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31017142	31017142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015338.5	+1	reviewed	p.A158V	1.000	35	0%	38	13.2%	2	50%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31383226	31383226	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006892.3	+1	reviewed	p.R380*	0.322	95	0%	99	18.2%	2	50%	-	-	-	NULL
BPIFB2	80341	genome.wustl.edu	37	20	31598867	31598867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025227.1	+1	reviewed	p.L49	0.005	82	0%	90	16.7%	4	0%	-	-	-	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
BPIFB6	128859	genome.wustl.edu	37	20	31622620	31622620	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174897.2	+1	validated	p.T118	0.996	74	0%	103	25.2%	1	100%	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB6	128859	genome.wustl.edu	37	20	31630656	31630656	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174897.2	+1	validated	p.L408	0.993	55	0%	76	34.2%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFA2	140683	genome.wustl.edu	37	20	31756984	31756984	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080574.2	+1	validated	p.C11	0.133	222	0%	231	27.3%	0	-	-	-	-	NULL
CDK5RAP1	51654	genome.wustl.edu	37	20	31975296	31975296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016408.2	-1	reviewed	p.E196D	1.000	166	0%	205	26.3%	3	0%	benign(0.078)	tolerated(0.33)	neutral(0.029)	HMMPfam_UPF0004
EIF2S2	8894	genome.wustl.edu	37	20	32684501	32684501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003908.3	-1	reviewed	p.K215N	1.000	235	0%	277	24.2%	37	16.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
ITCH	83737	genome.wustl.edu	37	20	33080315	33080315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031483.4	+1	reviewed	p.E777*	1.000	158	0%	148	25.7%	7	28.5%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
NCOA6	23054	genome.wustl.edu	37	20	33328767	33328767	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014071.2	-1	reviewed	p.E1765*	1.000	71	0%	65	20%	21	4.7%	-	-	-	NULL
NCOA6	23054	genome.wustl.edu	37	20	33330855	33330855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014071.2	-1	reviewed	p.P1069S	1.000	138	0%	165	22.4%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACSS2	55902	genome.wustl.edu	37	20	33503039	33503039	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000253382	+1	known	p.S285A	0.998	143	0%	173	26.6%	0	-	benign(0.002)	tolerated(0.78)	neutral(0.001)	HMMPfam_AMP-binding,superfamily_SSF56801
MYH7B	57644	genome.wustl.edu	37	20	33582024	33582024	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020884.3	+1	reviewed	p.F882L	1.000	44	0%	22	45.5%	0	-	probably_damaging(0.984)	tolerated(0.13)	deleterious(0.683)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MMP24	10893	genome.wustl.edu	37	20	33834651	33834651	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006690.3	+1	reviewed	p.L85	0.998	84	0%	131	30.5%	3	100%	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
RBM12	10137	genome.wustl.edu	37	20	34242979	34242979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006047.4	-1	reviewed	p.R89H	1.000	234	0%	235	30.2%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RBM39	9584	genome.wustl.edu	37	20	34292638	34292638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_184234.1	-1	reviewed	p.A482S	1.000	314	0%	190	31.6%	150	39.3%	benign(0.348)	tolerated(0.35)	neutral(0.131)	HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PHF20	51230	genome.wustl.edu	37	20	34526689	34526689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016436.4	+1	validated	p.H791N	0.998	178	0%	171	21.1%	3	33.3%	benign(0.006)	tolerated(0.59)	neutral(0.004)	NULL
SAMHD1	25939	genome.wustl.edu	37	20	35575150	35575150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015474.3	-1	reviewed	p.L89P	0.989	31	0%	39	30.8%	2	0%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
RBL1	5933	genome.wustl.edu	37	20	35646736	35646736	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002895.2	-1	reviewed	p.E890*	0.998	89	0%	105	23.8%	0	-	-	-	-	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
C20orf132	140699	genome.wustl.edu	37	20	35748238	35748238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400441	-1	known	p.L745I	0.997	284	0%	382	20.4%	2	50%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	superfamily_ARM repeat
TTI1	9675	genome.wustl.edu	37	20	36641241	36641241	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014657.1	-1	predicted	p.V326	0.101	174	0%	162	24.7%	3	33.3%	-	-	-	superfamily_ARM-type_fold
BPI	671	genome.wustl.edu	37	20	36938938	36938938	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001725.2	+1	reviewed	p.I144	0.004	56	0%	70	15.7%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
BPI	671	genome.wustl.edu	37	20	36953197	36953197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001725.2	+1	reviewed	p.R323*	0.009	63	0%	87	23%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
SLC32A1	140679	genome.wustl.edu	37	20	37356950	37356950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080552.2	+1	reviewed	p.A416T	1.000	24	0%	26	19.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Aa_trans
FAM83D	81610	genome.wustl.edu	37	20	37580707	37580707	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_030919.2	+1	validated	p.T464	0.000	75	0%	74	39.2%	35	48.5%	-	-	-	NULL
DHX35	60625	genome.wustl.edu	37	20	37662910	37662910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021931.2	+1	reviewed	p.E673*	1.000	161	0%	146	16.4%	3	0%	-	-	-	HMMPfam_DUF1605
TOP1	7150	genome.wustl.edu	37	20	39725963	39725963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003286.2	+1	reviewed	p.F278L	1.000	200	0%	186	26.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Topoisom_I_N,superfamily_Eukaryotic DNA topoisomerase I N-terminal DNA-binding fragment
ZHX3	23051	genome.wustl.edu	37	20	39813832	39813832	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015035.3	-1	reviewed	p.*957L	1.000	19	0%	22	18.2%	9	22.2%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40049283	40049283	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032221.3	-1	reviewed	p.E1998*	0.993	223	0%	174	29.9%	2	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40052238	40052238	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032221.3	-1	reviewed	p.I1483	0.898	395	0%	388	22.9%	1	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40126068	40126068	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032221.3	-1	reviewed	p.R350*	1.000	210	0%	147	30.6%	2	50%	-	-	-	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
SRSF6	6431	genome.wustl.edu	37	20	42088724	42088724	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006275.5	+1	reviewed	p.R145*	1.000	131	0%	132	23.5%	55	5.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
L3MBTL1	26013	genome.wustl.edu	37	20	42143992	42143992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015478.5	+1	reviewed	p.M148I	1.000	13	0%	24	25%	0	-	benign(0.013)	tolerated(0.18)	neutral(0.057)	NULL
SERINC3	10955	genome.wustl.edu	37	20	43132565	43132565	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006811.2	-1	validated	p.S316A	0.141	137	0%	119	18.5%	31	19.3%	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Serinc
YWHAB	7529	genome.wustl.edu	37	20	43533619	43533619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003404.3	+1	reviewed	p.S145	0.962	243	0%	223	26.9%	53	45.2%	-	-	-	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
PI3	5266	genome.wustl.edu	37	20	43804728	43804728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002638.3	+1	reviewed	p.K102N	0.903	170	0%	130	26.9%	51	49%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,PatternScan_4_DISULFIDE_CORE
SEMG2	6407	genome.wustl.edu	37	20	43850916	43850916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003008.2	+1	reviewed	p.Q215*	0.000	344	0%	255	38.8%	0	-	-	-	-	HMMPfam_Semenogelin
SEMG2	6407	genome.wustl.edu	37	20	43851268	43851268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003008.2	+1	reviewed	p.I332T	0.000	346	0.3%	232	24.1%	0	-	probably_damaging(0.982)	tolerated(1)	neutral(0.426)	HMMPfam_Semenogelin
RBPJL	11317	genome.wustl.edu	37	20	43940245	43940245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014276.2	+1	reviewed	p.P92S	1.000	41	0%	56	12.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind
WFDC9	259240	genome.wustl.edu	37	20	44236749	44236749	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_147198.2	-1	reviewed	p.*90Y	0.000	472	0%	508	22.2%	0	-	-	-	-	NULL
WFDC10A	140832	genome.wustl.edu	37	20	44259509	44259509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080753.2	+1	reviewed	p.K31R	0.014	117	0%	140	26.4%	0	-	possibly_damaging(0.666)	tolerated(0.61)	neutral(0.240)	NULL
ACOT8	10005	genome.wustl.edu	37	20	44483804	44483804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005469.2	-1	reviewed	p.R86W	0.705	21	0%	29	44.8%	43	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl_CoA_thio,superfamily_SSF54637
ZSWIM3	140831	genome.wustl.edu	37	20	44505602	44505602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080752.2	+1	validated	p.K135N	0.000	133	0%	127	26.8%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
CTSA	5476	genome.wustl.edu	37	20	44522691	44522691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000308.2	+1	reviewed	p.D271Y	0.995	85	0%	69	21.7%	140	37.1%	benign(0.419)	deleterious(0.02)	deleterious(0.519)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
ZNF334	55713	genome.wustl.edu	37	20	45129981	45129981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018102.3	-1	validated	p.R666H	0.210	169	0%	179	27.9%	0	-	benign(0.064)	tolerated(0.54)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZMYND8	23613	genome.wustl.edu	37	20	45855964	45855964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_183047.1	-1	reviewed	p.E954K	1.000	261	0%	240	25%	5	60%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	NULL
PREX1	57580	genome.wustl.edu	37	20	47258745	47258745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020820.3	-1	reviewed	p.E1246K	1.000	58	0%	53	20.8%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CSE1L	1434	genome.wustl.edu	37	20	47700588	47700588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001316.2	+1	reviewed	p.S503L	1.000	124	0%	87	26.4%	8	12.5%	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_Cse1,superfamily_ARM repeat
STAU1	6780	genome.wustl.edu	37	20	47733749	47733749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017453.2	-1	reviewed	p.E516K	1.000	224	0%	165	27.9%	32	18.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_dsRNA-binding domain-like
ZNFX1	57169	genome.wustl.edu	37	20	47866228	47866228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021035.2	-1	validated	p.F1111L	1.000	121	0%	107	30.8%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PTGIS	5740	genome.wustl.edu	37	20	48130929	48130929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000961.3	-1	reviewed	p.N287D	0.965	74	0%	85	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cytochrome_P450
UBE2V1	7335	genome.wustl.edu	37	20	48713259	48713259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021988.4	-1	reviewed	p.E64K	1.000	280	0%	263	25.9%	55	7.2%	possibly_damaging(0.476)	deleterious(0.01)	deleterious(0.562)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
PARD6B	84612	genome.wustl.edu	37	20	49366302	49366302	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032521.2	+1	reviewed	p.V132	0.998	128	0%	136	19.9%	0	-	-	-	-	superfamily_PDZ
ADNP	23394	genome.wustl.edu	37	20	49509386	49509386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015339.2	-1	reviewed	p.T622I	1.000	278	0%	243	30.5%	6	16.6%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_ZnF_C2H2
NFATC2	4773	genome.wustl.edu	37	20	50140112	50140112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173091.2	-1	reviewed	p.R223Q	1.000	26	0%	60	18.3%	0	-	possibly_damaging(0.439)	deleterious(0.01)	deleterious(0.548)	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51870955	51870955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173485.4	+1	validated	p.A320T	1.000	279	0%	171	38%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	NULL
BCAS1	8537	genome.wustl.edu	37	20	52644978	52644978	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003657.2	-1	reviewed	p.E226*	0.000	520	0%	437	24.3%	0	-	-	-	-	NULL
DOK5	55816	genome.wustl.edu	37	20	53208205	53208205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018431.3	+1	reviewed	p.E154K	1.000	146	0%	125	34.4%	0	-	benign(0.07)	tolerated(0.08)	neutral(0.305)	HMMPfam_IRS,HMMSmart_SM00310,superfamily_PH domain-like
DOK5	55816	genome.wustl.edu	37	20	53266981	53266981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018431.3	+1	reviewed	p.R295Q	0.996	75	0%	89	21.3%	0	-	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
MC3R	4159	genome.wustl.edu	37	20	54824013	54824013	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019888.3	+1	reviewed	p.V38	0.999	269	0%	303	23.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CSTF1	1477	genome.wustl.edu	37	20	54972347	54972347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001033521.1	+1	reviewed	p.F85C	1.000	152	0%	185	29.7%	7	28.5%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
CASS4	57091	genome.wustl.edu	37	20	55033400	55033400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020356.3	+1	validated	p.P653H	0.001	82	0%	69	34.8%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SPO11	23626	genome.wustl.edu	37	20	55918466	55918466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012444.2	+1	reviewed	p.L381I	1.000	85	0%	94	40.4%	0	-	possibly_damaging(0.935)	deleterious(0.02)	deleterious(0.764)	superfamily_DNA topoisomerase IV alpha subunit
SPO11	23626	genome.wustl.edu	37	20	55918494	55918494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012444.2	+1	reviewed	p.L390S	1.000	89	0%	98	25.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_DNA topoisomerase IV alpha subunit
GNAS	2778	genome.wustl.edu	37	20	57430063	57430063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001077490.1	+1	reviewed	p.P519L	0.767	6	0.000	6	0.667	0	-	probably_damaging(0.976)	tolerated(0.21)	neutral(0.462)	NULL
ZNF831	128611	genome.wustl.edu	37	20	57766126	57766126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178457.1	+1	provisional	p.A18T	0.536	16	0%	15	26.7%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
ZNF831	128611	genome.wustl.edu	37	20	57829142	57829142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_178457.1	+1	provisional	p.D1460Y	0.000	179	0%	164	23.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EDN3	1908	genome.wustl.edu	37	20	57899380	57899380	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207033.1	+1	reviewed	e4-2	0.023	207	0%	219	25.1%	0	-	-	-	-	-
SYCP2	10388	genome.wustl.edu	37	20	58455405	58455405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014258.2	-1	reviewed	p.D965A	0.978	58	0%	55	10.9%	0	-	possibly_damaging(0.757)	tolerated(0.07)	deleterious(0.599)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58476810	58476810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014258.2	-1	reviewed	p.S363R	0.993	170	0%	131	33.6%	0	-	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58486885	58486885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014258.2	-1	reviewed	p.D298N	1.000	67	0%	42	14.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58494615	58494615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014258.2	-1	reviewed	p.Q112P	0.009	102	0%	92	23.9%	0	-	benign(0.121)	tolerated(0.24)	neutral(0.047)	NULL
C20orf197	284756	genome.wustl.edu	37	20	58645817	58645817	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173644.1	+1	predicted	p.Q79*	0.003	118	0%	111	32.4%	0	-	-	-	-	NULL
TAF4	6874	genome.wustl.edu	37	20	60585192	60585192	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003185.3	-1	reviewed	p.Q557	1.000	19	0%	24	33.3%	16	62.5%	-	-	-	NULL
LSM14B	149986	genome.wustl.edu	37	20	60705677	60705677	+	Silent	SNP	C	C	T	rs144046063	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144703.2	+1	validated	p.F255	1.000	21	0%	21	23.8%	23	34.7%	-	-	-	HMMPfam_DFDF
COL9A3	1299	genome.wustl.edu	37	20	61468453	61468453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001853.3	+1	reviewed	p.A541V	1.000	93	0%	143	29.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61527623	61527623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033081.1	-1	reviewed	p.R726C	1.000	103	0%	115	27%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
DIDO1	11083	genome.wustl.edu	37	20	61541305	61541305	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033081.1	-1	reviewed	p.R303*	0.999	95	0%	107	30.8%	6	0%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
PTK6	5753	genome.wustl.edu	37	20	62162252	62162252	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005975.2	-1	reviewed	p.S287	0.002	7	0.000	15	0.267	12	58.3%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MYT1	4661	genome.wustl.edu	37	20	62871696	62871696	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004535.2	+1	reviewed	p.F1087	0.941	15	0%	20	25%	0	-	-	-	-	NULL
LIPI	149998	genome.wustl.edu	37	21	15524966	15524966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198996.2	-1	validated	p.T370N	0.017	86	0%	78	24.4%	0	-	benign(0.033)	tolerated(0.63)	neutral(0.005)	NULL
LIPI	149998	genome.wustl.edu	37	21	15554119	15554119	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400211	-1	known	p.G81*	0.875	81	0%	89	31.5%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
RBM11	54033	genome.wustl.edu	37	21	15599387	15599387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144770.3	+1	validated	p.P207T	0.552	544	0%	383	22.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
USP25	29761	genome.wustl.edu	37	21	17183474	17183474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013396.3	+1	validated	p.K292N	1.000	645	0%	669	29.9%	1	100%	benign(0.188)	tolerated(0.18)	neutral(0.074)	HMMPfam_UCH,superfamily_Cysteine proteinases
CHODL	140578	genome.wustl.edu	37	21	19628872	19628872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024944.2	+1	reviewed	p.M42I	0.998	58	0%	48	18.8%	0	-	benign(0)	tolerated(0.97)	-	HMMSmart_SM00034,superfamily_C-type lectin-like
NCAM2	4685	genome.wustl.edu	37	21	22696762	22696762	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004540.2	+1	reviewed	p.E227*	1.000	197	0%	195	22.1%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22746330	22746330	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004540.2	+1	reviewed	p.E398*	1.000	266	0%	244	24.2%	0	-	-	-	-	superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22804429	22804429	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004540.2	+1	reviewed	p.D494	1.000	145	0%	116	19.8%	0	-	-	-	-	superfamily_FN_III-like,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22881266	22881266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004540.2	+1	reviewed	p.F724L	1.000	151	0%	180	36.1%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
GABPA	2551	genome.wustl.edu	37	21	27141437	27141437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002040.3	+1	validated	p.E420A	1.000	116	0%	166	30.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"superfamily_""Winged helix"" DNA-binding domain"
APP	351	genome.wustl.edu	37	21	27284249	27284249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000484.3	-1	reviewed	p.N571K	1.000	67	0%	64	34.4%	728	47.2%	benign(0.004)	tolerated(0.93)	-	NULL
APP	351	genome.wustl.edu	37	21	27423361	27423361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000484.3	-1	reviewed	p.S206L	1.000	202	0%	170	22.4%	1010	41.2%	possibly_damaging(0.516)	tolerated(0.09)	deleterious(0.470)	NULL
ADAMTS1	9510	genome.wustl.edu	37	21	28210587	28210587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006988.3	-1	reviewed	p.H739N	1.000	72	0%	86	14%	6	0%	benign(0)	tolerated(1)	-	HMMPfam_ADAM_spacer1
ADAMTS5	11096	genome.wustl.edu	37	21	28327180	28327180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007038.3	-1	reviewed	p.G372E	1.000	132	0%	130	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
LTN1	26046	genome.wustl.edu	37	21	30303645	30303645	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015565.2	-1	validated	e29-1	1.000	273	0%	179	26.3%	0	-	-	-	-	-
USP16	10600	genome.wustl.edu	37	21	30419372	30419372	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001032410.1	+1	reviewed	p.L581V	0.371	254	0%	199	19.1%	3	66.6%	possibly_damaging(0.529)	deleterious(0.01)	deleterious(0.584)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP16	10600	genome.wustl.edu	37	21	30421130	30421130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001032410.1	+1	reviewed	p.S687Y	1.000	176	0%	162	23.5%	9	55.5%	possibly_damaging(0.832)	tolerated(0.11)	deleterious(0.589)	HMMPfam_UCH,superfamily_Cysteine proteinases
CCT8	10694	genome.wustl.edu	37	21	30434477	30434477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006585.2	-1	validated	p.G395D	1.000	289	0%	180	30%	178	42.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
GRIK1	2897	genome.wustl.edu	37	21	30959775	30959775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000830.3	-1	reviewed	p.F568L	1.000	113	0%	144	27.1%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
CLDN17	26285	genome.wustl.edu	37	21	31538540	31538540	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012131.2	-1	reviewed	p.F132	0.061	312	0%	218	28%	0	-	-	-	-	HMMPfam_PMP22_Claudin
KRTAP26-1	388818	genome.wustl.edu	37	21	31691901	31691901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203405.1	-1	validated	p.K151N	0.000	268	0%	305	31.1%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_PMG
KRTAP19-4	337971	genome.wustl.edu	37	21	31869386	31869386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181610.1	-1	provisional	p.C15G	0.809	220	0%	252	18.3%	0	-	unknown(0)	-	-	NULL
KRTAP6-2	337967	genome.wustl.edu	37	21	31971153	31971153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181604.1	-1	validated	p.G14D	0.995	144	0%	177	24.9%	0	-	unknown(0)	-	-	NULL
KRTAP11-1	337880	genome.wustl.edu	37	21	32253561	32253561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175858.2	-1	validated	p.P95S	0.850	167	0.6%	123	26%	0	-	probably_damaging(0.999)	tolerated(0.41)	deleterious(0.505)	HMMPfam_PMG
TIAM1	7074	genome.wustl.edu	37	21	32624090	32624090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003253.2	-1	validated	p.R460M	1.000	126	0%	78	25.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TIAM1	7074	genome.wustl.edu	37	21	32638790	32638790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003253.2	-1	validated	p.K167E	1.000	117	0%	141	23.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34004078	34004078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003895.3	-1	validated	p.E1317*	0.077	126	0%	101	31.7%	0	-	-	-	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34029206	34029206	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003895.3	-1	validated	p.V862	0.054	131	0%	123	34.1%	0	-	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34038272	34038272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003895.3	-1	validated	p.R709Q	1.000	122	0%	133	24.8%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34038343	34038343	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003895.3	-1	validated	p.F685	0.230	97	0%	107	28%	0	-	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
GCFC1	94104	genome.wustl.edu	37	21	34123506	34123506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016631.3	-1	reviewed	p.L511I	1.000	199	0%	176	28.4%	13	69.2%	benign(0.051)	tolerated(0.09)	neutral(0.299)	HMMPfam_GCFC
C21orf62	56245	genome.wustl.edu	37	21	34166166	34166166	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000479548	-1	known	p.V189	0.000	194	0%	152	19.1%	0	-	-	-	-	NULL
IFNAR2	3455	genome.wustl.edu	37	21	34625003	34625003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207585.1	+1	reviewed	p.F193V	0.377	100	0%	149	22.1%	16	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Fibronectin type III,HMMPfam_Interfer-bind
ENSG00000249624	0	genome.wustl.edu	37	21	34652145	34652145	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000433395	+1	known	p.T268M	0.006	175	0%	144	29.9%	8	25%	-	-	-	superfamily_Fibronectin type III
IFNAR1	3454	genome.wustl.edu	37	21	34727700	34727700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000629.2	+1	reviewed	p.N507H	0.408	167	0%	124	24.2%	3	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TMEM50B	757	genome.wustl.edu	37	21	34841168	34841168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006134.5	-1	validated	p.R9C	1.000	181	0.6%	156	30.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UPF0220
SON	6651	genome.wustl.edu	37	21	34924564	34924564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138927.1	+1	reviewed	p.M1009I	1.000	190	0%	161	33.5%	4	25%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
SON	6651	genome.wustl.edu	37	21	34931535	34931535	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138927.1	+1	reviewed	e5-1	1.000	143	0%	141	25.5%	0	-	-	-	-	-
CRYZL1	9946	genome.wustl.edu	37	21	34969701	34969701	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145858.2	-1	reviewed	p.L228*	0.996	120	0%	133	34.6%	3	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
ITSN1	6453	genome.wustl.edu	37	21	35147378	35147378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003024.2	+1	reviewed	p.I521T	1.000	232	0%	205	22.4%	2	100%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ITSN1	6453	genome.wustl.edu	37	21	35154399	35154399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003024.2	+1	reviewed	p.K596Q	1.000	231	0%	154	31.2%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ITSN1	6453	genome.wustl.edu	37	21	35169771	35169771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003024.2	+1	reviewed	p.K681Q	0.009	119	0%	126	15.1%	2	0%	benign(0.005)	tolerated(0.21)	neutral(0.044)	NULL
RCAN1	1827	genome.wustl.edu	37	21	35895910	35895910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004414.5	-1	reviewed	p.F117L	0.139	116	0%	130	24.6%	11	45.4%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Calcipressin
SETD4	54093	genome.wustl.edu	37	21	37417977	37417977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017438.3	-1	validated	p.Y210C	1.000	101	0%	73	23.3%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,superfamily_SET domain
DOPEY2	9980	genome.wustl.edu	37	21	37571423	37571423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005128.2	+1	validated	p.K65R	1.000	104	0%	120	20.8%	1	100%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Dopey_N
DOPEY2	9980	genome.wustl.edu	37	21	37653796	37653796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005128.2	+1	validated	p.S2016Y	1.000	123	0%	140	27.9%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37661367	37661367	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005128.2	+1	validated	p.T2126	0.000	171	0%	116	24.1%	15	46.6%	-	-	-	NULL
DSCR6	53820	genome.wustl.edu	37	21	38390253	38390253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018962.2	+1	validated	p.A107T	1.000	62	0%	79	40.5%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIGP	51227	genome.wustl.edu	37	21	38439669	38439669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153681.2	-1	reviewed	p.V80D	0.931	364	0%	398	31.7%	27	22.2%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_PIG-P
TTC3	7267	genome.wustl.edu	37	21	38495286	38495286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001894.1	+1	validated	p.R356Q	0.952	339	0%	195	26.7%	0	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38505030	38505030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001894.1	+1	validated	p.E469D	0.997	103	0%	68	20.6%	1	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38525300	38525300	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000414818	+1	known	p.Y185C	0.981	139	0%	104	25%	1	0%	-	-	-	NULL
KCNJ6	3763	genome.wustl.edu	37	21	39087397	39087397	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002240.2	-1	reviewed	p.V21	0.026	59	0%	34	38.2%	0	-	-	-	-	NULL
DSCR4	10281	genome.wustl.edu	37	21	39492494	39492494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000398948	-1	known	p.K46T	0.122	112	0%	124	29.8%	0	-	possibly_damaging(0.615)	-	-	NULL
ERG	2078	genome.wustl.edu	37	21	39775573	39775573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136154.1	-1	validated	p.E156D	0.982	101	0%	72	30.6%	5	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
BRWD1	54014	genome.wustl.edu	37	21	40559167	40559167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018963.3	-1	reviewed	p.E2250*	0.987	218	0%	186	33.3%	1	100%	-	-	-	superfamily_WD40 repeat-like
SH3BGR	6450	genome.wustl.edu	37	21	40834318	40834318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007341.2	+1	validated	p.Q84H	1.000	196	0%	117	29.9%	2	100%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SH3BGR,superfamily_Thiordxn-like_fd
IGSF5	150084	genome.wustl.edu	37	21	41137739	41137739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080444.1	+1	provisional	p.Q126H	1.000	83	0%	85	18.8%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
BACE2	25825	genome.wustl.edu	37	21	42647524	42647524	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012105.3	+1	reviewed	p.S510	1.000	60	0%	62	12.9%	546	23.4%	-	-	-	NULL
MX2	4600	genome.wustl.edu	37	21	42771165	42771165	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002463.1	+1	reviewed	p.G439*	0.996	148	0%	148	31.1%	2	0%	-	-	-	HMMPfam_Dynamin_M
MX2	4600	genome.wustl.edu	37	21	42775240	42775240	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002463.1	+1	reviewed	p.G540	0.000	71	0%	69	31.9%	3	100%	-	-	-	HMMPfam_Dynamin_M
TMPRSS2	7113	genome.wustl.edu	37	21	42840454	42840454	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005656.3	-1	reviewed	p.E395*	0.012	30	0%	62	14.5%	5	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RRP1B	23076	genome.wustl.edu	37	21	45096691	45096691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015056.2	+1	validated	p.T231M	0.000	123	0%	174	29.9%	0	-	possibly_damaging(0.782)	tolerated(0.16)	neutral(0.352)	NULL
TRPM2	7226	genome.wustl.edu	37	21	45774585	45774585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003307.3	+1	reviewed	p.Y74H	0.375	112	0%	91	24.2%	0	-	probably_damaging(0.978)	tolerated(0.42)	neutral(0.434)	NULL
TRPM2	7226	genome.wustl.edu	37	21	45810816	45810816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003307.3	+1	reviewed	p.E450K	0.999	45	0%	96	38.5%	1	0%	benign(0.202)	tolerated(0.13)	neutral(0.272)	NULL
TSPEAR	54084	genome.wustl.edu	37	21	45941979	45941979	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144991.2	-1	provisional	p.I451	0.279	14	0%	19	31.6%	0	-	-	-	-	HMMPfam_EPTP
TSPEAR	54084	genome.wustl.edu	37	21	45947247	45947247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144991.2	-1	provisional	p.E359D	0.050	46	0%	69	24.6%	0	-	benign(0.018)	tolerated(0.43)	neutral(0.014)	HMMPfam_EPTP
KRTAP10-5	386680	genome.wustl.edu	37	21	46000061	46000061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198694.2	-1	reviewed	p.V132A	0.000	474	0%	593	28.7%	0	-	unknown(0)	tolerated(0.69)	-	NULL
POFUT2	23275	genome.wustl.edu	37	21	46689877	46689877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_133635.4	-1	validated	p.D297Y	1.000	56	0%	70	17.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_O-FucT
LOC100288508	100288508	genome.wustl.edu	37	21	47545922	47545922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343757.1	-1	model	p.R283S	0.026	24	0%	24	29.2%	451	0%	-	-	-	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47703598	47703598	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003906.3	-1	reviewed	p.K458N	0.250	81	0%	88	28.4%	2	50%	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	superfamily_SSF54928
MCM3AP	8888	genome.wustl.edu	37	21	47705052	47705052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003906.3	-1	reviewed	p.S50L	0.001	81	0%	87	24.1%	1	100%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
S100B	6285	genome.wustl.edu	37	21	48022292	48022292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006272.2	-1	reviewed	p.D13N	0.564	75	0%	53	32.1%	3	0%	benign(0.053)	tolerated(0.5)	neutral(0.013)	HMMPfam_S_100,superfamily_EF-hand
OR11H1	81061	genome.wustl.edu	37	22	16449528	16449528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005239.1	-1	provisional	p.V93F	0.251	778	0.1%	944	7.6%	0	-	benign(0.089)	deleterious(0)	neutral(0.451)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H1	81061	genome.wustl.edu	37	22	16449556	16449556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005239.1	-1	provisional	p.F83L	0.981	774	0%	921	11.5%	0	-	possibly_damaging(0.575)	tolerated(0.09)	deleterious(0.493)	HMMPfam_7tm_1,superfamily_SSF81321
XKR3	150165	genome.wustl.edu	37	22	17264843	17264843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_175878.3	-1	validated	p.S349N	0.463	116	0%	125	39.2%	0	-	possibly_damaging(0.873)	tolerated(0.17)	neutral(0.398)	HMMPfam_XK-related
CECR2	27443	genome.wustl.edu	37	22	18020202	18020202	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400573	+1	known	p.R511*	0.010	43	0%	58	43.1%	0	-	-	-	-	NULL
CECR2	27443	genome.wustl.edu	37	22	18029148	18029148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400573	+1	known	p.R1369C	0.997	35	0%	47	34%	0	-	benign(0.064)	tolerated(0.68)	neutral(0.006)	NULL
USP18	11274	genome.wustl.edu	37	22	18640527	18640527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017414.3	+1	validated	p.D33Y	0.000	166	0%	137	21.2%	12	8.3%	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	NULL
TSSK2	23617	genome.wustl.edu	37	22	19119078	19119078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053006.4	+1	validated	p.F56V	1.000	67	0%	90	17.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CLTCL1	8218	genome.wustl.edu	37	22	19209536	19209536	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007098.3	-1	reviewed	p.I833	1.000	153	0%	163	33.7%	0	-	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
UFD1L	7353	genome.wustl.edu	37	22	19455394	19455394	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005659.6	-1	reviewed	e5+2	1.000	72	0%	68	35.3%	0	-	-	-	-	-
CDC45	8318	genome.wustl.edu	37	22	19467737	19467737	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003504.3	+1	reviewed	p.L36	0.914	24	0%	23	34.8%	4	25%	-	-	-	HMMPfam_CDC45
CDC45	8318	genome.wustl.edu	37	22	19506379	19506379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003504.3	+1	reviewed	p.K550R	1.000	66	0%	62	24.2%	20	20%	benign(0.006)	tolerated(0.66)	neutral(0.003)	HMMPfam_CDC45
TBX1	6899	genome.wustl.edu	37	22	19752592	19752592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080647.1	+1	reviewed	p.E266K	1.000	54	0%	56	35.7%	0	-	possibly_damaging(0.553)	tolerated(0.11)	neutral(0.460)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
DGCR8	54487	genome.wustl.edu	37	22	20078962	20078962	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022720.5	+1	validated	p.L437	0.943	177	0%	258	32.9%	0	-	-	-	-	NULL
USP41	373856	genome.wustl.edu	37	22	20721022	20721022	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000292729	-1	known	p.S190Y	0.740	213	0%	239	23%	10	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
AIFM3	150209	genome.wustl.edu	37	22	21332216	21332216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144704.2	+1	validated	p.D467N	0.993	32	0%	72	22.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
THAP7	80764	genome.wustl.edu	37	22	21355015	21355015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008695.1	-1	validated	p.R100C	0.946	93	0%	60	35%	48	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC116	164592	genome.wustl.edu	37	22	21989177	21989177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152612.2	+1	provisional	p.E275D	0.069	71	0%	78	20.5%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
MAPK1	5594	genome.wustl.edu	37	22	22123543	22123543	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002745.4	-1	reviewed	p.E345*	1.000	109	0%	91	28.6%	3	33.3%	-	-	-	superfamily_Protein kinase-like (PK-like)
TOP3B	8940	genome.wustl.edu	37	22	22312958	22312958	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000457270	-1	known	p.S466L	0.731	33	0%	18	38.9%	18	44.4%	-	-	-	NULL
IGLV1-47	28822	genome.wustl.edu	37	22	22712481	22712481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390294	+1	known	p.P75L	0.032	341	0%	363	17.9%	55	0%	benign(0.02)	tolerated(0.06)	neutral(0.324)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-16	28799	genome.wustl.edu	37	22	23090191	23090191	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000390311	+1	known	p.E44*	0.029	184	0%	182	25.8%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GNAZ	2781	genome.wustl.edu	37	22	23465441	23465441	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002073.2	+1	reviewed	p.Y297*	1.000	20	0%	25	28%	0	-	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIWIL3	440822	genome.wustl.edu	37	22	25147450	25147450	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008496.2	-1	validated	p.T331	0.993	554	0%	499	21.2%	0	-	-	-	-	HMMPfam_PAZ,superfamily_SSF101690
PIWIL3	440822	genome.wustl.edu	37	22	25150035	25150035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008496.2	-1	validated	p.G308E	0.000	214	0%	182	23.6%	0	-	benign(0.078)	tolerated(1)	neutral(0.005)	HMMPfam_PAZ,superfamily_SSF101690
SGSM1	129049	genome.wustl.edu	37	22	25246249	25246249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039948.2	+1	validated	p.R102I	1.000	51	0%	41	22%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_RUN
SGSM1	129049	genome.wustl.edu	37	22	25251323	25251323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039948.2	+1	validated	p.E199K	0.999	26	0%	48	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SGSM1	129049	genome.wustl.edu	37	22	25313718	25313718	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039948.2	+1	validated	p.R1063*	1.000	54	0%	34	23.5%	1	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TMEM211	255349	genome.wustl.edu	37	22	25331458	25331458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001001663.1	-1	provisional	p.R78W	0.987	159	0%	276	34.1%	15	46.6%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_L_HGMIC_fpl
ADRBK2	157	genome.wustl.edu	37	22	26086193	26086193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005160.3	+1	reviewed	p.R332I	1.000	121	0%	107	32.7%	0	-	possibly_damaging(0.656)	deleterious(0)	deleterious(0.675)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ADRBK2	157	genome.wustl.edu	37	22	26110445	26110445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005160.3	+1	reviewed	p.V521A	0.997	137	0%	98	33.7%	5	0%	benign(0.134)	deleterious(0)	neutral(0.456)	HMMSmart_S_TK_X,superfamily_Kinase_like
MYO18B	84700	genome.wustl.edu	37	22	26159215	26159215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032608.5	+1	reviewed	p.K19N	1.000	44	0%	76	31.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26306954	26306954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032608.5	+1	reviewed	p.E1767D	1.000	40	0%	34	23.5%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
CHEK2	11200	genome.wustl.edu	37	22	29106017	29106017	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005735.1	-1	reviewed	p.E318*	1.000	74	0%	111	33.3%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RFPL1	5988	genome.wustl.edu	37	22	29835120	29835120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021026.2	+1	validated	p.L114M	0.003	294	0%	379	29.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF57850
RFPL1	5988	genome.wustl.edu	37	22	29837752	29837752	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021026.2	+1	validated	p.E199*	0.055	183	0%	238	20.6%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
NEFH	4744	genome.wustl.edu	37	22	29885873	29885873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021076.3	+1	reviewed	p.E748D	0.025	227	0%	285	32.6%	0	-	-	-	-	NULL
THOC5	8563	genome.wustl.edu	37	22	29925219	29925219	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002877.1	-1	validated	p.L286*	0.999	187	0%	188	17.6%	4	0%	-	-	-	HMMPfam_FimP
THOC5	8563	genome.wustl.edu	37	22	29938862	29938862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002877.1	-1	validated	p.K146N	0.686	44	0%	36	19.4%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FimP
THOC5	8563	genome.wustl.edu	37	22	29945057	29945057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001002877.1	-1	validated	p.R27Q	0.915	73	0%	86	22.1%	3	33.3%	possibly_damaging(0.77)	deleterious(0.02)	deleterious(0.669)	NULL
NF2	4771	genome.wustl.edu	37	22	30077491	30077491	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000268.3	+1	reviewed	p.I546	0.758	139	0%	169	25.4%	2	50%	-	-	-	superfamily_Moesin tail domain,HMMPfam_ERM
SEC14L4	284904	genome.wustl.edu	37	22	30890140	30890140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174977.3	-1	reviewed	p.R193*	0.941	79	0%	57	26.3%	0	-	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
SEC14L4	284904	genome.wustl.edu	37	22	30890194	30890194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174977.3	-1	reviewed	p.F175V	1.000	88	0%	57	35.1%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
PLA2G3	50487	genome.wustl.edu	37	22	31534698	31534698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015715.3	-1	validated	p.R201Q	1.000	72	0%	68	25%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Phospholip_A2_2,superfamily_Phospholipase A2 PLA2
LIMK2	3985	genome.wustl.edu	37	22	31658762	31658762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001031801.1	+1	reviewed	p.R259M	1.000	25	0%	28	25%	11	36.3%	benign(0.229)	deleterious(0)	neutral(0.468)	NULL
PIK3IP1	113791	genome.wustl.edu	37	22	31688321	31688321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_052880.4	-1	validated	p.A4T	0.955	37	0%	42	19%	24	16.6%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Kringle-like
EIF4ENIF1	56478	genome.wustl.edu	37	22	31838014	31838014	+	Missense_Mutation	SNP	G	G	A	rs150972596	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019843.3	-1	reviewed	p.S766L	0.974	236	0%	214	20.1%	5	60%	benign(0.014)	deleterious(0.04)	neutral(0.349)	NULL
EIF4ENIF1	56478	genome.wustl.edu	37	22	31845468	31845468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019843.3	-1	reviewed	p.S545I	1.000	219	0%	268	26.1%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_EIF4E-T
EIF4ENIF1	56478	genome.wustl.edu	37	22	31854494	31854494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_019843.3	-1	reviewed	p.F310L	1.000	82	0%	111	32.4%	5	60%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_EIF4E-T
PISD	23761	genome.wustl.edu	37	22	32016555	32016555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014338.3	-1	validated	p.R296H	1.000	40	0%	29	24.1%	26	23%	possibly_damaging(0.691)	deleterious(0.01)	deleterious(0.653)	HMMPfam_PS_Dcarbxylase
RFPL3-AS1	10737	genome.wustl.edu	37	22	32756141	32756141	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NR_001450.2	-1	provisional	NULL	0.002	26	0%	50	36%	1	0%	-	-	-	-
BPIFC	254240	genome.wustl.edu	37	22	32813114	32813114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174932.2	-1	validated	p.L428I	0.918	338	0%	367	24.3%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFC	254240	genome.wustl.edu	37	22	32831812	32831812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_174932.2	-1	validated	p.F268C	0.869	75	0%	93	29%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal_perm-incr_a/b_dom
FBXO7	25793	genome.wustl.edu	37	22	32891500	32891500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012179.3	+1	reviewed	p.D389Y	1.000	211	0%	107	27.1%	23	43.4%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_SSF81383
SYN3	8224	genome.wustl.edu	37	22	32929824	32929824	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003490.3	-1	reviewed	p.A350	0.000	26	0%	31	25.8%	0	-	-	-	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
TIMP3	7078	genome.wustl.edu	37	22	33254031	33254031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000362.4	+1	reviewed	p.T115M	1.000	104	0%	113	26.5%	11	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
TIMP3	7078	genome.wustl.edu	37	22	33255244	33255244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000382049	+1	known	p.R175W	0.232	130	0%	106	24.5%	15	0%	benign(0)	-	-	NULL
APOL3	80833	genome.wustl.edu	37	22	36537946	36537946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145640.2	-1	reviewed	p.R171C	0.002	106	0%	147	33.3%	10	20%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_ApoL
APOL4	80832	genome.wustl.edu	37	22	36587890	36587890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000352371	-1	known	p.D96G	0.004	205	0%	187	21.9%	1	0%	possibly_damaging(0.915)	tolerated(0.07)	deleterious(0.685)	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36716900	36716900	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002473.4	-1	reviewed	p.E271*	1.000	30	0%	19	21.1%	21	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNG2	10369	genome.wustl.edu	37	22	36962410	36962410	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006078.2	-1	reviewed	p.F142	1.000	42	0%	49	38.8%	0	-	-	-	-	HMMPfam_PMP22_Claudin
IL2RB	3560	genome.wustl.edu	37	22	37533663	37533663	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000878.2	-1	reviewed	p.F167	0.002	95	0%	75	26.7%	2	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
CYTH4	27128	genome.wustl.edu	37	22	37705262	37705262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013385.3	+1	reviewed	p.D236N	1.000	66	0%	40	25%	13	0%	benign(0.162)	deleterious(0)	neutral(0.459)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7
EIF3L	51386	genome.wustl.edu	37	22	38270510	38270510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016091.2	+1	validated	p.E295D	1.000	76	0%	77	16.9%	243	17.6%	possibly_damaging(0.61)	tolerated(0.53)	neutral(0.219)	HMMPfam_Paf67
APOBEC3D	140564	genome.wustl.edu	37	22	39428283	39428283	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152426.3	+1	reviewed	p.R375*	0.000	159	0.6%	207	30.4%	1	0%	-	-	-	HMMPfam_APOBEC_C
APOBEC3H	164668	genome.wustl.edu	37	22	39496312	39496312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_181773.3	+1	reviewed	p.R10H	0.000	73	0%	127	31.5%	8	12.5%	benign(0.412)	tolerated(0.54)	neutral(0.141)	HMMPfam_APOBEC_N
CACNA1I	8911	genome.wustl.edu	37	22	39966949	39966949	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021096.3	+1	reviewed	p.Q64	1.000	57	0%	60	30%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
ENTHD1	150350	genome.wustl.edu	37	22	40161611	40161611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152512.3	-1	provisional	p.A279D	0.470	342	0%	342	28.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENTHD1	150350	genome.wustl.edu	37	22	40231865	40231865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152512.3	-1	provisional	p.H231N	0.000	634	0.2%	673	27.9%	0	-	benign(0)	tolerated(0.98)	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40661412	40661412	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000446273	+1	known	p.E136*	1.000	192	0%	163	27%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40676079	40676079	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015088.2	+1	validated	p.R1062*	1.000	301	0%	297	17.2%	2	0%	-	-	-	NULL
SGSM3	27352	genome.wustl.edu	37	22	40804367	40804367	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015705.4	+1	validated	p.F572	1.000	33	0%	15	40%	21	38%	-	-	-	HMMPfam_RUN
MKL1	57591	genome.wustl.edu	37	22	40816949	40816949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020831.3	-1	validated	p.K261N	1.000	24	0%	16	31.2%	26	19.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC25A17	10478	genome.wustl.edu	37	22	41215249	41215249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006358.2	-1	validated	p.A2T	0.978	22	0%	14	28.6%	11	72.7%	unknown(0)	-	-	NULL
DNAJB7	150353	genome.wustl.edu	37	22	41257293	41257293	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145174.1	-1	provisional	p.E236*	0.000	160	0%	190	24.2%	0	-	-	-	-	NULL
XPNPEP3	63929	genome.wustl.edu	37	22	41322427	41322427	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022098.2	+1	validated	p.S504	0.577	264	0%	313	17.6%	3	0%	-	-	-	superfamily_Creatinase/aminopeptidase
EP300	2033	genome.wustl.edu	37	22	41553249	41553249	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001429.3	+1	reviewed	p.E1113V	1.000	104	0%	97	15.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
XRCC6	2547	genome.wustl.edu	37	22	42042922	42042922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001469.3	+1	reviewed	p.D266Y	1.000	340	0.3%	284	19.7%	35	11.4%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_Ku,superfamily_SPOC-like
SREBF2	6721	genome.wustl.edu	37	22	42269988	42269988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004599.2	+1	reviewed	p.E352K	1.000	67	0%	82	28%	13	23%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
SREBF2	6721	genome.wustl.edu	37	22	42276875	42276875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000424354	+1	known	p.E673*	0.999	45	0%	61	31.1%	9	44.4%	-	-	-	NULL
CENPM	79019	genome.wustl.edu	37	22	42339619	42339619	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024053.3	-1	validated	p.L133	1.000	11	0%	12	41.7%	61	49.1%	-	-	-	NULL
MCAT	27349	genome.wustl.edu	37	22	43537190	43537190	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173467.4	-1	reviewed	p.A163	0.338	80	0%	108	20.4%	19	26.3%	-	-	-	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,PatternScan_ABC_TRANSPORTER_1
EFCAB6	64800	genome.wustl.edu	37	22	43986067	43986067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022785.2	-1	validated	p.F973L	0.014	283	0%	252	19.8%	1	100%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44168938	44168938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022785.2	-1	validated	p.R62L	0.998	115	0%	70	24.3%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
SULT4A1	25830	genome.wustl.edu	37	22	44234777	44234777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014351.3	-1	reviewed	p.E160*	1.000	42	0%	26	15.4%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PNPLA3	80339	genome.wustl.edu	37	22	44333039	44333039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025225.2	+1	reviewed	p.S289L	0.000	60	0%	55	27.3%	2	100%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44335908	44335908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_025225.2	+1	reviewed	p.M339L	0.001	77	0%	74	28.4%	4	50%	benign(0)	tolerated(1)	-	NULL
SMC1B	27127	genome.wustl.edu	37	22	45785619	45785619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_148674.3	-1	validated	p.E568D	1.000	268	0%	266	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540
FBLN1	2192	genome.wustl.edu	37	22	45929004	45929004	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000437711	+1	known	p.R97C	0.878	41	0%	30	33.3%	649	32.8%	-	-	-	HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
ATXN10	25814	genome.wustl.edu	37	22	46098594	46098594	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_013236.3	+1	reviewed	p.K172*	1.000	363	0%	339	31.3%	3	33.3%	-	-	-	superfamily_ARM-type_fold
PKDREJ	10343	genome.wustl.edu	37	22	46653295	46653295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006071.1	-1	reviewed	p.F1975L	0.000	58	0%	50	40%	0	-	benign(0.034)	tolerated(0.14)	neutral(0.252)	HMMPfam_PKD_channel
PKDREJ	10343	genome.wustl.edu	37	22	46654353	46654353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006071.1	-1	reviewed	p.L1623I	0.062	83	0%	118	29.7%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
ZBED4	9889	genome.wustl.edu	37	22	50277472	50277472	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014838.2	+1	validated	p.S54	0.001	50	0%	81	24.7%	0	-	-	-	-	NULL
ALG12	79087	genome.wustl.edu	37	22	50298063	50298063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024105.3	-1	reviewed	p.A362T	0.726	36	0%	80	27.5%	62	41.9%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Glyco_transf_22
CHKB	1120	genome.wustl.edu	37	22	51018247	51018247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005198.4	-1	reviewed	p.R314C	0.998	41	0%	38	28.9%	9	0%	benign(0.38)	tolerated(0.06)	neutral(0.444)	superfamily_Protein kinase-like (PK-like)
RABL2B	11158	genome.wustl.edu	37	22	51208418	51208418	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001130923.1	-1	reviewed	p.T108	0.998	77	0%	99	22.2%	22	31.8%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000234295	0	genome.wustl.edu	37	GL000192.1	306243	306243	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000425945	-1	known	p.S611*	NULL	97	0%	51	19.6%	0	-	-	-	-	NULL
ENSG00000234295	0	genome.wustl.edu	37	GL000192.1	311392	311392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000425945	-1	known	p.V502M	NULL	93	0%	97	20.6%	0	-	possibly_damaging(0.817)	deleterious(0.02)	deleterious(0.692)	NULL
ENSG00000234295	0	genome.wustl.edu	37	GL000192.1	380983	380983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000425945	-1	known	p.E173D	NULL	159	0%	206	8.7%	0	-	benign(0.011)	tolerated(0.48)	neutral(0.011)	NULL
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	72024	72024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400847	+1	known	p.F58L	NULL	66	0%	61	57.4%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ENSG00000215608	0	genome.wustl.edu	37	GL000212.1	126719	126719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000400673	+1	known	p.E138D	NULL	50	0%	68	33.8%	8	0%	-	-	-	NULL
IL3RA	3563	genome.wustl.edu	37	X	1475188	1475188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002183.2	+1	reviewed	p.H231N	0.003	32	0%	31	54.8%	3	0%	benign(0.032)	tolerated(0.33)	neutral(0.026)	NULL
IL3RA	3563	genome.wustl.edu	37	X	1477755	1477755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002183.2	+1	reviewed	p.R245I	0.003	24	0%	32	53.1%	1	0%	benign(0.29)	tolerated(0.16)	neutral(0.149)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3242612	3242612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015419.3	-1	reviewed	p.E372*	0.061	76	0%	83	31.3%	0	-	-	-	-	NULL
MXRA5	25878	genome.wustl.edu	37	X	3261699	3261699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_015419.3	-1	reviewed	p.R59I	1.000	25	0.000	9	0.556	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMSmart_SM00013,HMMSmart_SM00369,superfamily_L domain-like
STS	412	genome.wustl.edu	37	X	7177682	7177682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000351.4	+1	reviewed	p.F230L	0.000	243	0%	209	35.9%	2	0%	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
STS	412	genome.wustl.edu	37	X	7268056	7268056	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000351.4	+1	reviewed	p.L502	0.996	167	0%	93	10.8%	6	16.6%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
TLR7	51284	genome.wustl.edu	37	X	12904321	12904321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016562.3	+1	reviewed	p.L232I	1.000	388	0%	314	36%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
TLR7	51284	genome.wustl.edu	37	X	12905568	12905568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016562.3	+1	reviewed	p.K647N	1.000	531	0%	366	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
TLR7	51284	genome.wustl.edu	37	X	12905971	12905971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016562.3	+1	reviewed	p.H782Y	0.046	368	0%	245	22.9%	1	0%	possibly_damaging(0.84)	deleterious(0.04)	deleterious(0.670)	superfamily_L domain-like
TLR8	51311	genome.wustl.edu	37	X	12938853	12938853	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138636.4	+1	reviewed	p.S565*	0.000	191	0%	106	22.6%	0	-	-	-	-	superfamily_SSF52058
ATXN3L	92552	genome.wustl.edu	37	X	13337101	13337101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001135995.1	-1	validated	p.S318L	0.003	314	0%	196	28.6%	0	-	benign(0.012)	deleterious(0)	neutral(0.445)	NULL
TCEANC	170082	genome.wustl.edu	37	X	13681148	13681148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152634.2	+1	validated	p.R204I	1.000	300	0%	262	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
OFD1	8481	genome.wustl.edu	37	X	13764499	13764499	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003611.2	+1	reviewed	p.F193	0.271	168	0%	112	10.7%	0	-	-	-	-	NULL
GPM6B	2824	genome.wustl.edu	37	X	13798106	13798106	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000472735	-1	known	p.R32C	0.996	345	0%	192	41.7%	1	100%	-	-	-	HMMPfam_Myelin_PLP
ASB11	140456	genome.wustl.edu	37	X	15306080	15306080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080873.1	-1	reviewed	p.R257I	0.155	106	0%	66	22.7%	0	-	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	HMMPfam_Ank,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15333553	15333553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080873.1	-1	reviewed	p.I59V	0.998	245	0%	110	30%	0	-	benign(0)	tolerated(0.95)	-	superfamily_ANK
PIGA	5277	genome.wustl.edu	37	X	15342918	15342918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002641.2	-1	reviewed	p.K353Q	1.000	281	0%	179	45.8%	1	100%	benign(0.019)	tolerated(0.45)	neutral(0.013)	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
BMX	660	genome.wustl.edu	37	X	15560270	15560270	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001721.6	+1	reviewed	p.V520	0.843	348	0%	263	10.3%	1	100%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
SYAP1	94056	genome.wustl.edu	37	X	16778479	16778479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032796.3	+1	validated	p.N352K	0.823	140	0%	112	10.7%	16	0%	possibly_damaging(0.647)	tolerated(0.07)	deleterious(0.546)	NULL
TXLNG	55787	genome.wustl.edu	37	X	16836938	16836938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018360.2	+1	reviewed	p.R115Q	1.000	109	0%	85	12.9%	4	0%	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
RBBP7	5931	genome.wustl.edu	37	X	16870185	16870185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002893.3	-1	reviewed	p.N342H	1.000	697	0%	513	33.3%	194	74.2%	benign(0.031)	tolerated(0.56)	neutral(0.008)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
NHS	4810	genome.wustl.edu	37	X	17744785	17744785	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198270.2	+1	reviewed	p.K832	1.000	724	0%	445	39.3%	2	0%	-	-	-	NULL
RAI2	10742	genome.wustl.edu	37	X	17818977	17818977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021785.4	-1	reviewed	p.S385Y	0.992	161	0%	109	30.3%	70	82.8%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
BEND2	139105	genome.wustl.edu	37	X	18221838	18221838	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153346.4	-1	validated	p.F230	0.000	456	0%	292	33.9%	0	-	-	-	-	NULL
GPR64	10149	genome.wustl.edu	37	X	19017287	19017287	+	Missense_Mutation	SNP	C	C	T	rs184370776	by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001079858.2	-1	validated	p.R814Q	1.000	271	0%	206	40.3%	2	50%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
SH3KBP1	30011	genome.wustl.edu	37	X	19554565	19554565	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031892.2	-1	reviewed	p.N656	0.928	88	0%	68	44.1%	9	44.4%	-	-	-	NULL
CXorf23	256643	genome.wustl.edu	37	X	19983366	19983366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198279.3	-1	validated	p.K357T	0.025	272	0%	196	39.8%	0	-	possibly_damaging(0.944)	tolerated(0.23)	neutral(0.430)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20043079	20043079	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152780.3	-1	validated	p.E427*	0.995	309	0%	204	13.2%	0	-	-	-	-	HMMPfam_MAP7
ENSG00000249566	0	genome.wustl.edu	37	X	23094310	23094310	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508288	-1	novel	NULL	0.999	171	0%	66	37.9%	59	0%	-	-	-	-
ENSG00000249566	0	genome.wustl.edu	37	X	23095028	23095028	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000508288	-1	novel	NULL	0.994	132	0%	56	32.1%	33	0%	-	-	-	-
FAM48B2	170067	genome.wustl.edu	37	X	24330346	24330346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001136233.1	-1	provisional	p.L363I	0.000	124	0%	100	33%	0	-	-	-	-	NULL
MAGEB6	158809	genome.wustl.edu	37	X	26212571	26212571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173523.2	+1	reviewed	p.A203V	0.000	167	0%	153	13.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_MAGE
DCAF8L1	139425	genome.wustl.edu	37	X	27999214	27999214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001017930.1	-1	reviewed	p.E80K	0.514	312	0%	178	38.8%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	28807472	28807472	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014271.3	+1	reviewed	p.P4	0.816	110	0%	91	20.9%	0	-	-	-	-	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29417401	29417401	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014271.3	+1	reviewed	p.R227	1.000	165	0%	83	36.1%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
IL1RAPL1	11141	genome.wustl.edu	37	X	29972771	29972771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014271.3	+1	reviewed	p.K445T	1.000	200	0%	96	15.6%	0	-	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
MAGEB2	4113	genome.wustl.edu	37	X	30236749	30236749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002364.4	+1	reviewed	p.A18T	0.000	61	0%	51	31.4%	0	-	benign(0.049)	tolerated(0.22)	neutral(0.045)	NULL
NR0B1	190	genome.wustl.edu	37	X	30322827	30322827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000475.4	-1	reviewed	p.E428K	0.982	311	0%	204	31.9%	0	-	probably_damaging(0.995)	tolerated(0.44)	deleterious(0.470)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
GK	2710	genome.wustl.edu	37	X	30712610	30712610	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001128127.1	+1	reviewed	p.E170*	0.842	127	0%	77	32.5%	1	0%	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30852233	30852233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152787.3	-1	reviewed	p.R642Q	1.000	53	0%	38	21.1%	0	-	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	NULL
DMD	1756	genome.wustl.edu	37	X	31196076	31196076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.L3412R	1.000	98	0%	70	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMD	1756	genome.wustl.edu	37	X	31792291	31792291	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000465285	-1	known	p.Y171*	1.000	132	0%	78	23.1%	0	-	benign(0.15)	tolerated(0.43)	neutral(0.026)	NULL
DMD	1756	genome.wustl.edu	37	X	31950313	31950313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.F2216I	1.000	311	0%	128	47.7%	0	-	benign(0.21)	tolerated(0.07)	neutral(0.340)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32360240	32360240	+	Nonsense_Mutation	SNP	G	G	A	rs128626249		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.R1967*	1.000	89	0%	56	26.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32503187	32503187	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.Q884	0.999	197	0%	158	36.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32583957	32583957	+	Silent	SNP	G	G	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.G618	1.000	139	0%	110	42.7%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32591909	32591909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004006.2	-1	reviewed	p.L553I	0.997	73	0%	44	13.6%	0	-	benign(0.012)	tolerated(0.12)	neutral(0.261)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148392	34148392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203408.3	-1	validated	p.F668L	0.129	329	0%	225	40.4%	0	-	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	NULL
CYBB	1536	genome.wustl.edu	37	X	37664376	37664376	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000397.3	+1	reviewed	p.V423	1.000	214	0%	159	10.7%	30	0%	-	-	-	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
CXorf27	25763	genome.wustl.edu	37	X	37850416	37850416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012274.1	+1	validated	p.D108E	0.021	134	0%	54	35.2%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	superfamily_Histone-fold
SYTL5	94122	genome.wustl.edu	37	X	37948763	37948763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138780.2	+1	reviewed	p.R252W	0.000	75	0%	54	11.1%	0	-	possibly_damaging(0.598)	tolerated(0.18)	neutral(0.263)	HMMPfam_RPH3A_effector
OTC	5009	genome.wustl.edu	37	X	38271192	38271192	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000531.5	+1	reviewed	p.V315	0.864	589	0%	409	39.1%	0	-	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace
MED14	9282	genome.wustl.edu	37	X	40522196	40522196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004229.3	-1	reviewed	p.R1222I	1.000	111	0%	52	48.1%	4	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CASK	8573	genome.wustl.edu	37	X	41390380	41390380	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003688.3	-1	reviewed	p.I795	1.000	209	0.5%	152	32.9%	20	50%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_GuKc,superfamily_SSF52540
MAOA	4128	genome.wustl.edu	37	X	43601289	43601289	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000240.2	+1	reviewed	p.Y419	0.998	89	0%	41	41.5%	0	-	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
CDK16	5127	genome.wustl.edu	37	X	47085748	47085748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033018.3	+1	reviewed	p.K294T	1.000	48	0%	34	29.4%	235	81.2%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF41	7592	genome.wustl.edu	37	X	47308573	47308573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007130.2	-1	reviewed	p.T199N	0.966	334	0%	246	35.4%	0	-	possibly_damaging(0.667)	tolerated(0.57)	neutral(0.242)	NULL
ZNF41	7592	genome.wustl.edu	37	X	47315387	47315387	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007130.2	-1	reviewed	p.A76	0.190	113	0%	89	31.5%	2	100%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF182	7569	genome.wustl.edu	37	X	47836169	47836169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006962.1	-1	reviewed	p.F439L	0.969	239	0%	176	10.8%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47917908	47917908	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001037735.2	-1	validated	p.Y641*	0.001	121	0%	94	44.7%	2	50%	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
PORCN	64840	genome.wustl.edu	37	X	48372644	48372644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_203475.1	+1	reviewed	p.E246K	1.000	86	0%	49	10.2%	22	0%	benign(0.033)	tolerated(0.12)	neutral(0.262)	HMMPfam_MBOAT
HDAC6	10013	genome.wustl.edu	37	X	48672931	48672931	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006044.2	+1	reviewed	p.F297	0.000	129	0%	92	40.2%	6	50%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
SLC35A2	7355	genome.wustl.edu	37	X	48763749	48763749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005660.1	-1	provisional	p.A116T	1.000	40	0%	37	27%	51	86.2%	benign(0.208)	deleterious(0.03)	neutral(0.385)	HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE
PIM2	11040	genome.wustl.edu	37	X	48772313	48772313	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006875.3	-1	reviewed	p.P193	0.006	47	0%	49	12.2%	34	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CACNA1F	778	genome.wustl.edu	37	X	49071615	49071615	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005183.2	-1	reviewed	p.V1187	1.000	63	0%	101	42.6%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
MIR362	574030	genome.wustl.edu	37	X	49773606	49773606	+	RNA	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385280	+1	known	NULL	0.026	65	0%	43	14%	0	-	-	-	-	-
AKAP4	8852	genome.wustl.edu	37	X	49958661	49958661	+	Missense_Mutation	SNP	C	C	T	rs147442985		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003886.2	-1	reviewed	p.E235K	1.000	477	0.2%	298	39.9%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50053138	50053138	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033031.2	+1	reviewed	p.E657*	0.001	160	0%	85	41.2%	0	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50055608	50055608	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033031.2	+1	reviewed	p.I1133	1.000	297	0%	192	44.8%	0	-	-	-	-	HMMPfam_Cyclin_N,superfamily_Cyclin-like
CXorf67	340602	genome.wustl.edu	37	X	51150972	51150972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000342995	+1	known	p.E368D	0.000	63	0%	37	13.5%	0	-	possibly_damaging(0.868)	tolerated(0.6)	neutral(0.342)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51638592	51638592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001005333.1	+1	reviewed	p.F219L	1.000	77	0%	33	42.4%	79	94.9%	probably_damaging(0.973)	tolerated(0.35)	neutral(0.435)	NULL
SSX7	280658	genome.wustl.edu	37	X	52679436	52679436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173358.2	-1	reviewed	p.M99I	0.005	466	0%	356	42.1%	0	-	benign(0.017)	deleterious(0.05)	neutral(0.346)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53644303	53644303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_031407.4	-1	reviewed	p.D593Y	1.000	59	0%	44	25%	0	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_DUF913,superfamily_ARM repeat
ENSG00000221750	0	genome.wustl.edu	37	X	54953765	54953765	+	RNA	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000408823	+1	novel	NULL	0.011	40	0%	16	43.8%	0	-	-	-	-	-
TRO	7216	genome.wustl.edu	37	X	54955296	54955296	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039705.1	+1	reviewed	p.E713	0.995	90	0%	41	39%	0	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54955968	54955968	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039705.1	+1	reviewed	p.V937	0.000	123	0%	52	23.1%	0	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54957288	54957288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001039705.1	+1	reviewed	p.F1377L	0.065	128	0%	55	12.7%	0	-	probably_damaging(0.973)	deleterious(0.04)	deleterious(0.764)	NULL
PAGE2	203569	genome.wustl.edu	37	X	55117012	55117012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207339.2	+1	provisional	p.E54D	0.001	199	0%	111	42.3%	0	-	benign(0.139)	deleterious(0)	neutral(0.457)	HMMPfam_GAGE
FOXR2	139628	genome.wustl.edu	37	X	55650163	55650163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198451.3	+1	validated	p.D7Y	0.000	184	0%	100	30%	0	-	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	NULL
ASB12	142689	genome.wustl.edu	37	X	63444876	63444876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_130388.2	-1	reviewed	p.R210C	0.772	119	0%	114	36.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
MTMR8	55613	genome.wustl.edu	37	X	63574803	63574803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017677.3	-1	reviewed	p.D108Y	1.000	130	0%	55	23.6%	0	-	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	superfamily_PH domain-like
MSN	4478	genome.wustl.edu	37	X	64958439	64958439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002444.2	+1	reviewed	p.R435L	1.000	61	0%	50	20%	106	33.9%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_ERM
LOC100288788	100288788	genome.wustl.edu	37	X	65177010	65177010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343822.1	-1	model	p.F10C	1.000	262	0%	197	32.5%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361
VSIG4	11326	genome.wustl.edu	37	X	65253370	65253370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007268.2	-1	reviewed	p.P120S	0.894	451	0%	440	36.8%	5	0%	possibly_damaging(0.909)	tolerated(0.24)	neutral(0.399)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HEPH	9843	genome.wustl.edu	37	X	65478765	65478765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138737.3	+1	reviewed	p.G997C	1.000	57	0%	58	10.3%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2
EDA2R	60401	genome.wustl.edu	37	X	65819382	65819382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021783.2	-1	reviewed	p.E280K	0.002	48	0%	26	42.3%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
EDA2R	60401	genome.wustl.edu	37	X	65819463	65819463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021783.2	-1	reviewed	p.E253K	0.995	34	0%	26	46.2%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
OPHN1	4983	genome.wustl.edu	37	X	67316726	67316726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002547.2	-1	reviewed	p.E558K	1.000	301	0%	218	32.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_RhoGAP,superfamily_Rho_GAP
OPHN1	4983	genome.wustl.edu	37	X	67652753	67652753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002547.2	-1	reviewed	p.K37T	1.000	81	0%	47	42.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PJA1	64219	genome.wustl.edu	37	X	68381693	68381693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145119.3	-1	reviewed	p.W463C	0.998	147	0%	137	32.1%	16	87.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OTUD6A	139562	genome.wustl.edu	37	X	69282602	69282602	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207320.1	+1	provisional	p.V76	0.000	12	0%	19	42.1%	0	-	-	-	-	NULL
OTUD6A	139562	genome.wustl.edu	37	X	69283004	69283004	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_207320.1	+1	provisional	p.I210	0.010	23	0%	27	48.1%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
KIF4A	24137	genome.wustl.edu	37	X	69595117	69595117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012310.4	+1	reviewed	p.K614N	1.000	156	0%	126	42.9%	5	100%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
MED12	9968	genome.wustl.edu	37	X	70347824	70347824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005120.2	+1	reviewed	p.F1021L	0.999	144	0%	97	34%	3	100%	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	NULL
NONO	4841	genome.wustl.edu	37	X	70517767	70517767	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000418921	+1	known	p.S232*	1.000	28	0%	27	63%	532	87%	unknown(0)	tolerated(0.45)	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70612539	70612539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004606.3	+1	reviewed	p.K988E	1.000	237	0%	152	34.9%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350784	71350784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024455.3	-1	validated	p.A203T	0.995	84	0%	52	11.5%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_Retrotrans_gag
RGAG4	340526	genome.wustl.edu	37	X	71351349	71351349	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001024455.3	-1	validated	p.A14	0.954	50	0%	34	11.8%	0	-	-	-	-	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71425953	71425953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017669.2	-1	validated	p.E888D	0.101	353	0%	193	45.6%	0	-	possibly_damaging(0.718)	tolerated(0.36)	neutral(0.280)	NULL
PHKA1	5255	genome.wustl.edu	37	X	71825457	71825457	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002637.3	-1	reviewed	p.Y873	0.999	217	0%	149	36.2%	1	100%	-	-	-	HMMPfam_PHK_AB
CDX4	1046	genome.wustl.edu	37	X	72674416	72674416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005193.1	+1	provisional	p.E284K	0.997	95	0%	64	32.8%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73963534	73963534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001008537.2	-1	validated	p.F286L	0.998	641	0%	400	40.7%	0	-	benign(0.135)	deleterious(0)	neutral(0.456)	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75004058	75004058	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138703.4	-1	validated	p.E277*	0.048	210	0%	158	36.1%	0	-	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76912116	76912116	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000489.3	-1	reviewed	p.D1383A	1.000	345	0%	214	46.3%	1	100%	probably_damaging(0.991)	tolerated(0.25)	deleterious(0.481)	NULL
ATRX	546	genome.wustl.edu	37	X	76938212	76938212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000489.3	-1	reviewed	p.D846Y	0.002	1022	0%	582	42.8%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
ATRX	546	genome.wustl.edu	37	X	76972615	76972615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000489.3	-1	reviewed	p.Q42H	0.645	432	0%	218	20.6%	0	-	benign(0.218)	deleterious(0.02)	neutral(0.405)	NULL
CYSLTR1	10800	genome.wustl.edu	37	X	77528356	77528356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006639.2	-1	reviewed	p.F296L	1.000	207	0%	150	52%	0	-	benign(0.041)	deleterious(0.01)	neutral(0.408)	superfamily_Family A G protein-coupled receptor-like
TBX22	50945	genome.wustl.edu	37	X	79282783	79282783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001109878.1	+1	reviewed	p.P276H	1.000	111	0%	57	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
FAM46D	169966	genome.wustl.edu	37	X	79699002	79699002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152630.4	+1	validated	p.L322I	0.996	278	0%	172	49.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1693
BRWD3	254065	genome.wustl.edu	37	X	80001135	80001135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153252.4	-1	reviewed	p.R175I	1.000	143	0%	107	43.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00320,HMMPfam_WD40
CYLC1	1538	genome.wustl.edu	37	X	83128870	83128870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021118.1	+1	provisional	p.R385I	0.107	129	0.8%	128	43%	0	-	unknown(0)	tolerated(0.08)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83129529	83129529	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021118.1	+1	provisional	p.E605*	0.998	240	0%	308	40.9%	0	-	-	-	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83361979	83361979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014496.4	-1	reviewed	p.S394Y	0.523	156	0%	95	44.2%	0	-	benign(0.257)	deleterious(0.01)	neutral(0.432)	HMMPfam_Pkinase_C
HDX	139324	genome.wustl.edu	37	X	83581232	83581232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144657.4	-1	validated	p.R634I	1.000	267	0%	150	19.3%	0	-	possibly_damaging(0.801)	deleterious(0.02)	deleterious(0.684)	NULL
HDX	139324	genome.wustl.edu	37	X	83723879	83723879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144657.4	-1	validated	p.Q284H	1.000	331	0%	233	35.6%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
POF1B	79983	genome.wustl.edu	37	X	84634289	84634289	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024921.3	-1	reviewed	p.G57	0.990	90	0%	50	12%	1	0%	-	-	-	NULL
CHM	1121	genome.wustl.edu	37	X	85218695	85218695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000390.2	-1	reviewed	p.R226I	1.000	154	0%	64	43.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GDI,superfamily_SSF51905
DACH2	117154	genome.wustl.edu	37	X	85769311	85769311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_053281.3	+1	reviewed	p.S186Y	1.000	110	0%	69	50.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177398	89177398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138960.3	+1	reviewed	p.R105H	0.287	301	0%	179	25.7%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
PCDH11X	27328	genome.wustl.edu	37	X	91133075	91133075	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032968.3	+1	reviewed	p.E612	0.044	244	0%	118	39%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH11X	27328	genome.wustl.edu	37	X	91133599	91133599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032968.3	+1	reviewed	p.R787H	0.422	270	0%	141	34%	0	-	benign(0.14)	tolerated(0.39)	neutral(0.028)	HMMPfam_Protocadherin
DIAPH2	1730	genome.wustl.edu	37	X	96013171	96013171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006729.4	+1	reviewed	p.E121K	1.000	116	0%	74	36.5%	0	-	unknown(0)	deleterious(0.05)	-	HMMPfam_Drf_GBD
DIAPH2	1730	genome.wustl.edu	37	X	96185753	96185753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006729.4	+1	reviewed	p.N334H	1.000	186	0%	112	40.2%	1	100%	unknown(0)	deleterious(0.01)	-	HMMPfam_Drf_FH3
TNMD	64102	genome.wustl.edu	37	X	99854051	99854051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_022144.2	+1	reviewed	p.L206I	0.995	123	0.8%	67	41.8%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
XKRX	402415	genome.wustl.edu	37	X	100183167	100183167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_212559.2	-1	reviewed	p.L56V	1.000	478	0%	278	39.2%	1	100%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
CENPI	2491	genome.wustl.edu	37	X	100402762	100402762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_006733.2	+1	reviewed	p.N613H	0.922	214	0%	104	43.3%	2	50%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
DRP2	1821	genome.wustl.edu	37	X	100497444	100497444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001939.2	+1	reviewed	p.R320Q	0.982	257	0%	178	42.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
BTK	695	genome.wustl.edu	37	X	100630208	100630208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000061.2	-1	reviewed	p.P22H	1.000	344	0%	255	23.9%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GLA	2717	genome.wustl.edu	37	X	100653821	100653821	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000169.2	-1	reviewed	p.E251	0.001	365	0%	234	9.8%	24	4.1%	-	-	-	superfamily_(Trans)glycosidases
HNRNPH2	3188	genome.wustl.edu	37	X	100667551	100667551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001032393.1	+1	reviewed	p.R192Q	1.000	159	0%	127	40.9%	18	94.4%	possibly_damaging(0.691)	tolerated(0.07)	deleterious(0.567)	superfamily_RNA-binding domain RBD
ARMCX1	51309	genome.wustl.edu	37	X	100809056	100809056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016608.1	+1	reviewed	p.W381C	1.000	363	0%	297	23.6%	0	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	HMMPfam_DUF634,superfamily_ARM-type_fold
TCEAL2	140597	genome.wustl.edu	37	X	101382465	101382465	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_080390.3	+1	reviewed	p.T221	0.000	382	0%	269	46.8%	1	0%	-	-	-	NULL
NXF2B	728343	genome.wustl.edu	37	X	101623471	101623471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099686.1	-1	provisional	p.Q235H	0.282	671	0%	740	14.7%	0	-	benign(0.151)	deleterious(0.02)	neutral(0.397)	superfamily_SSF52058
GPRASP1	9737	genome.wustl.edu	37	X	101908928	101908928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099410.1	+1	reviewed	p.E29D	0.540	334	0%	162	40.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
TCEAL7	56849	genome.wustl.edu	37	X	102586609	102586609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_152278.2	+1	provisional	p.S93Y	0.067	528	0%	605	31.6%	1	0%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_TFA
ZCCHC18	644353	genome.wustl.edu	37	X	103359807	103359807	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001143978.1	+1	provisional	p.G335	0.007	96	0%	63	28.6%	0	-	-	-	-	NULL
IL1RAPL2	26280	genome.wustl.edu	37	X	105011230	105011230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017416.1	+1	reviewed	p.S546Y	1.000	394	0%	267	38.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
NRK	203447	genome.wustl.edu	37	X	105125753	105125753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198465.2	+1	validated	p.S78Y	1.000	16	0%	11	45.5%	0	-	possibly_damaging(0.722)	deleterious(0.02)	deleterious(0.645)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NRK	203447	genome.wustl.edu	37	X	105168998	105168998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_198465.2	+1	validated	p.S1096Y	0.000	417	0%	340	11.2%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
SERPINA7	6906	genome.wustl.edu	37	X	105280540	105280540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000354.5	-1	reviewed	p.K170N	0.000	437	0%	327	20.2%	0	-	benign(0.01)	tolerated(0.16)	neutral(0.060)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
LOC644504	644504	genome.wustl.edu	37	X	105570773	105570773	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_001128075.2	+1	model	p.E51*	1.000	163	0%	102	29.4%	0	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
CXorf57	55086	genome.wustl.edu	37	X	105883929	105883929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018015.5	+1	validated	p.L628I	0.004	671	0%	467	40.9%	0	-	benign(0.012)	tolerated(0.67)	neutral(0.003)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105905370	105905370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018015.5	+1	validated	p.Y702D	0.066	266	0%	140	40%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106083339	106083339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017752.2	+1	validated	p.V472A	1.000	255	0%	151	11.3%	0	-	possibly_damaging(0.451)	deleterious(0.01)	deleterious(0.553)	superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D8B	54885	genome.wustl.edu	37	X	106093485	106093485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_017752.2	+1	validated	p.L690V	1.000	364	0%	222	22.1%	0	-	benign(0.104)	tolerated(0.89)	neutral(0.008)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MORC4	79710	genome.wustl.edu	37	X	106186104	106186104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024657.4	-1	reviewed	p.E673*	0.914	770	0%	516	32%	6	33.3%	-	-	-	NULL
RBM41	55285	genome.wustl.edu	37	X	106331957	106331957	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018301.3	-1	validated	p.P212	1.000	232	0%	167	18.6%	1	100%	-	-	-	NULL
RBM41	55285	genome.wustl.edu	37	X	106332018	106332018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018301.3	-1	validated	p.F192C	0.999	255	0%	162	32.1%	0	-	possibly_damaging(0.716)	deleterious(0.01)	deleterious(0.665)	NULL
NUP62CL	54830	genome.wustl.edu	37	X	106397395	106397395	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000432145	-1	known	p.E24*	0.949	219	0%	116	52.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nsp1_C
FRMPD3	84443	genome.wustl.edu	37	X	106808267	106808267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_042978.6	+1	model	p.R456W	1.000	124	0%	66	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MID2	11043	genome.wustl.edu	37	X	107169397	107169397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012216.3	+1	reviewed	p.E557D	1.000	202	0%	231	55%	0	-	possibly_damaging(0.882)	tolerated(0.31)	neutral(0.371)	NULL
VSIG1	340547	genome.wustl.edu	37	X	107310301	107310301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182607.4	+1	reviewed	p.D117N	0.985	568	0%	418	40.9%	0	-	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
VSIG1	340547	genome.wustl.edu	37	X	107320330	107320330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182607.4	+1	reviewed	p.D295Y	0.005	551	0%	356	30.9%	2	0%	possibly_damaging(0.716)	deleterious(0.02)	deleterious(0.642)	NULL
COL4A6	1288	genome.wustl.edu	37	X	107418374	107418374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001847.2	-1	reviewed	p.G969*	1.000	295	0%	231	29.9%	0	-	-	-	-	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107936062	107936062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033380.1	+1	reviewed	p.R1538I	1.000	276	0%	191	35.6%	9	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
TMEM164	84187	genome.wustl.edu	37	X	109416479	109416479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_032227.3	+1	validated	p.E232K	1.000	244	0%	125	24.8%	2	100%	benign(0.056)	tolerated(0.57)	neutral(0.009)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111097016	111097016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_012471.2	-1	reviewed	p.I407V	1.000	212	0%	134	17.9%	0	-	possibly_damaging(0.573)	tolerated(0.24)	neutral(0.234)	HMMPfam_Ion_trans
ZCCHC16	340595	genome.wustl.edu	37	X	111698344	111698344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001004308.2	+1	validated	p.L130I	0.043	536	0%	336	45.5%	0	-	probably_damaging(0.959)	tolerated(0.37)	neutral(0.422)	NULL
HTR2C	3358	genome.wustl.edu	37	X	114141243	114141243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000868.2	+1	reviewed	p.F214L	1.000	355	0%	185	40%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_7tm_1,superfamily_SSF81321
HTR2C	3358	genome.wustl.edu	37	X	114141388	114141388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000868.2	+1	reviewed	p.F263V	0.006	336	0%	166	38%	0	-	unknown(0)	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC642357	642357	genome.wustl.edu	37	X	114938359	114938359	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_016681.3	+1	model	NULL	0.997	24	0%	42	35.7%	4	0%	-	-	-	-
AGTR2	186	genome.wustl.edu	37	X	115303997	115303997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000686.4	+1	reviewed	p.R155I	1.000	808	0%	422	39.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC6A14	11254	genome.wustl.edu	37	X	115584287	115584287	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_007231.3	+1	reviewed	p.D422A	1.000	260	0%	167	33.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SNF
KLHL13	90293	genome.wustl.edu	37	X	117044002	117044002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_033495.3	-1	reviewed	p.E210K	1.000	223	0.4%	246	37.8%	1	100%	benign(0.041)	tolerated(0.4)	neutral(0.018)	HMMPfam_BACK
IL13RA1	3597	genome.wustl.edu	37	X	117892034	117892034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001560.2	+1	reviewed	p.K169Q	0.249	231	0%	215	42.3%	4	100%	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III
ZCCHC12	170261	genome.wustl.edu	37	X	117960324	117960324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173798.2	+1	provisional	p.L373V	0.997	202	0%	249	38.2%	8	100%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118227973	118227973	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020721.1	-1	validated	p.P451	0.000	202	0%	140	35.7%	0	-	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118239046	118239046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020721.1	-1	validated	p.S326Y	0.001	292	0%	203	38.9%	0	-	probably_damaging(0.999)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118250588	118250588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020721.1	-1	validated	p.F174S	1.000	70	0%	55	27.3%	0	-	probably_damaging(0.999)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118284277	118284277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_020721.1	-1	validated	p.R89Q	0.000	35	0%	15	40%	0	-	unknown(0)	-	-	NULL
SLC25A43	203427	genome.wustl.edu	37	X	118587016	118587016	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_145305.2	+1	reviewed	p.K338	0.998	208	0%	176	38.6%	0	-	-	-	-	NULL
CUL4B	8450	genome.wustl.edu	37	X	119680466	119680466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003588.3	-1	reviewed	p.S279*	1.000	97	0%	86	37.2%	0	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
C1GALT1C1	29071	genome.wustl.edu	37	X	119760440	119760440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001011551.2	-1	reviewed	p.M194I	1.000	285	0%	155	31.6%	6	50%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122460031	122460031	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000828.4	+1	reviewed	p.A221V	0.995	361	0%	259	27.4%	0	-	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123176490	123176490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042749.1	+1	validated	p.D153N	1.000	116	0%	58	43.1%	3	33.3%	benign(0.011)	tolerated(0.24)	neutral(0.038)	NULL
LOC100129231	100129231	genome.wustl.edu	37	X	123338764	123338764	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XR_078598.1	-1	model	NULL	1.000	18	0%	21	33.3%	0	-	-	-	-	-
ODZ1	10178	genome.wustl.edu	37	X	123514725	123514725	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014253.3	-1	reviewed	p.N2613	1.000	358	0.6%	240	53.3%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123518085	123518085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014253.3	-1	reviewed	p.I2225M	0.317	339	0%	196	52.6%	0	-	possibly_damaging(0.903)	tolerated(0.13)	deleterious(0.611)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123518515	123518515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_014253.3	-1	reviewed	p.V2082A	1.000	315	0%	169	13%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DCAF12L2	340578	genome.wustl.edu	37	X	125298579	125298579	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013628.2	-1	reviewed	p.L443	0.999	100	0%	78	32.1%	0	-	-	-	-	NULL
DCAF12L2	340578	genome.wustl.edu	37	X	125298988	125298988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001013628.2	-1	reviewed	p.R307Q	1.000	92	0%	76	34.2%	0	-	probably_damaging(0.986)	tolerated(0.84)	neutral(0.435)	superfamily_WD40_like
OCRL	4952	genome.wustl.edu	37	X	128710006	128710006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000276.3	+1	reviewed	p.R616W	1.000	597	0%	299	44.1%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129149114	129149114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_021946.3	+1	reviewed	p.R789H	1.000	72	0%	47	31.9%	0	-	possibly_damaging(0.501)	tolerated(0.21)	neutral(0.212)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130217834	130217834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_144967.3	+1	validated	p.R149H	0.982	202	0%	126	52.4%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
MST4	51765	genome.wustl.edu	37	X	131188763	131188763	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016542.3	+1	reviewed	p.V49	1.000	224	0%	114	11.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
DDX26B	203522	genome.wustl.edu	37	X	134714072	134714072	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_182540.4	+1	validated	p.R790*	1.000	138	0%	101	49.5%	1	100%	-	-	-	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135067916	135067916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001042537.1	+1	reviewed	p.I85M	0.998	186	0%	209	42.6%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Na_H_Exchanger
MAP7D3	79649	genome.wustl.edu	37	X	135314006	135314006	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_024597.3	-1	reviewed	p.P370	0.000	143	0.7%	120	38.3%	3	100%	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135430303	135430303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153834.3	+1	reviewed	p.V1480F	0.000	817	0%	521	40.9%	0	-	possibly_damaging(0.879)	tolerated(0.07)	deleterious(0.661)	NULL
GPR112	139378	genome.wustl.edu	37	X	135431839	135431839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153834.3	+1	reviewed	p.L1992I	0.001	577	0%	298	29.5%	0	-	benign(0.006)	tolerated(0.45)	neutral(0.012)	NULL
GPR112	139378	genome.wustl.edu	37	X	135477570	135477570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153834.3	+1	reviewed	p.S2701L	0.001	144	0%	54	27.8%	0	-	possibly_damaging(0.452)	tolerated(0.06)	deleterious(0.471)	HMMPfam_GPS,HMMSmart_GPS
GPR112	139378	genome.wustl.edu	37	X	135482223	135482223	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153834.3	+1	reviewed	p.V2841	1.000	260	0%	175	26.3%	0	-	-	-	-	HMMPfam_7tm_2
GPR112	139378	genome.wustl.edu	37	X	135498649	135498649	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_153834.3	+1	reviewed	p.*3081L	0.890	207	0%	150	36%	0	-	-	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135572532	135572532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001727.1	+1	validated	p.F225L	1.000	175	0%	139	33.1%	0	-	benign(0.036)	tolerated(0.21)	neutral(0.046)	HMMPfam_7tm_1,superfamily_SSF81321
F9	2158	genome.wustl.edu	37	X	138643737	138643737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000133.3	+1	reviewed	p.R298Q	0.000	397	0%	212	27.4%	0	-	benign(0.062)	tolerated(0.16)	neutral(0.064)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MCF2	4168	genome.wustl.edu	37	X	138664610	138664610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000370573	-1	known	p.G859C	0.024	165	0%	119	11.8%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
MCF2	4168	genome.wustl.edu	37	X	138686869	138686869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001099855.1	-1	reviewed	p.E632*	1.000	264	0%	159	28.9%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP11C	286410	genome.wustl.edu	37	X	138864759	138864759	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000422228	-1	known	p.S188L	1.000	350	0%	166	42.2%	1	100%	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N
SOX3	6658	genome.wustl.edu	37	X	139586640	139586640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005634.2	-1	reviewed	p.R196C	1.000	73	0%	52	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
MAGEC3	139081	genome.wustl.edu	37	X	140985510	140985510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_138702.1	+1	reviewed	p.L608F	0.001	377	0.3%	219	35.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC392555	392555	genome.wustl.edu	37	X	141261200	141261200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343852.1	-1	model	p.L243I	0.000	246	0%	150	45.3%	0	-	-	-	-	HMMPfam_MAGE
LOC392555	392555	genome.wustl.edu	37	X	141261541	141261541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343852.1	-1	model	p.L156I	0.000	57	0%	34	11.8%	0	-	-	-	-	NULL
LOC392555	392555	genome.wustl.edu	37	X	141261621	141261621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	XM_002343852.1	-1	model	p.S129Y	0.002	56	0%	36	44.4%	0	-	-	-	-	NULL
MAGEC2	51438	genome.wustl.edu	37	X	141291248	141291248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016249.3	-1	reviewed	p.D176Y	0.000	765	0.1%	514	31.7%	0	-	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMPfam_MAGE
MAGEC2	51438	genome.wustl.edu	37	X	141291731	141291731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_016249.3	-1	reviewed	p.D15N	0.000	390	0%	299	29.4%	0	-	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142716775	142716775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173078.3	-1	reviewed	p.Q717L	1.000	252	0%	132	29.5%	0	-	benign(0.003)	tolerated(0.41)	neutral(0.015)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904091	144904091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001144003.2	+1	reviewed	p.G50*	1.000	111	0%	49	42.9%	0	-	-	-	-	HMMSmart_SM00013,superfamily_L domain-like
MIR507	574512	genome.wustl.edu	37	X	146312548	146312548	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000385234	-1	known	NULL	0.000	644	0%	551	39.7%	0	-	-	-	-	-
AFF2	2334	genome.wustl.edu	37	X	147985789	147985789	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002025.3	+1	reviewed	e9+1	1.000	234	0%	143	37.1%	0	-	-	-	-	-
MTM1	4534	genome.wustl.edu	37	X	149767061	149767061	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000252.2	+1	reviewed	p.E48*	1.000	154	0%	58	32.8%	0	-	-	-	-	HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729
HMGB3	3149	genome.wustl.edu	37	X	150154136	150154136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005342.2	+1	validated	p.T22A	1.000	303	0%	176	41.5%	28	78.5%	benign(0.337)	deleterious(0.04)	neutral(0.455)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
PASD1	139135	genome.wustl.edu	37	X	150791503	150791503	+	Silent	SNP	A	A	T	rs5924977	byCluster;byFrequency;by1000genomes	TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_173493.2	+1	reviewed	p.G171	0.006	148	0%	119	56.3%	0	-	-	-	-	NULL
CNGA2	1260	genome.wustl.edu	37	X	150911752	150911752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_005140.1	+1	reviewed	p.F259L	1.000	346	0%	225	44.4%	0	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMPfam_Ion_trans,superfamily_SSF81324
MAGEA4	4103	genome.wustl.edu	37	X	151092533	151092533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001011548.1	+1	reviewed	p.K133Q	0.012	50	0%	59	39%	0	-	benign(0.333)	deleterious(0.01)	deleterious(0.510)	HMMPfam_MAGE
GABRQ	55879	genome.wustl.edu	37	X	151806758	151806758	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_018558.2	+1	reviewed	p.F34	0.000	80	0%	33	33.3%	0	-	-	-	-	NULL
CETN2	1069	genome.wustl.edu	37	X	151997789	151997789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004344.1	-1	reviewed	p.K65N	1.000	110	0%	118	43.2%	12	100%	benign(0.009)	tolerated(0.07)	neutral(0.320)	superfamily_SSF47473
CETN2	1069	genome.wustl.edu	37	X	151998255	151998255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_004344.1	-1	reviewed	p.R18I	1.000	176	0%	149	33.6%	41	73.1%	benign(0.072)	deleterious(0.01)	neutral(0.411)	superfamily_SSF47473
ZNF275	10838	genome.wustl.edu	37	X	152612785	152612785	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001080485.2	+1	validated	p.C214	0.008	323	0%	296	32.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BGN	633	genome.wustl.edu	37	X	152772036	152772036	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001711.4	+1	reviewed	p.F205	0.405	36	0%	50	32%	164	6%	-	-	-	superfamily_SSF52058
L1CAM	3897	genome.wustl.edu	37	X	153129907	153129907	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000425.3	-1	reviewed	p.S1064	0.000	50	0%	46	26.1%	1	0%	-	-	-	superfamily_Fibronectin type III
FLNA	2316	genome.wustl.edu	37	X	153580957	153580957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001110556.1	-1	reviewed	p.V2156I	0.961	10	0%	14	28.6%	251	36.2%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00557,superfamily_E set domains
GAB3	139716	genome.wustl.edu	37	X	153924212	153924212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081573.1	-1	reviewed	p.E504K	1.000	118	0%	64	12.5%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
GAB3	139716	genome.wustl.edu	37	X	153925442	153925442	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001081573.1	-1	reviewed	p.E464	0.322	115	0%	103	47.6%	0	-	-	-	-	NULL
DKC1	1736	genome.wustl.edu	37	X	153994556	153994556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_001363.3	+1	reviewed	p.R110Q	1.000	107	0%	93	36.6%	28	92.8%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
MPP1	4354	genome.wustl.edu	37	X	154018253	154018253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_002436.3	-1	reviewed	p.Q152H	1.000	112	0%	104	13.5%	6	0%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	superfamily_SH3-domain,HMMSmart_SM00228,superfamily_PDZ domain-like
F8	2157	genome.wustl.edu	37	X	154158433	154158433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000132.3	-1	reviewed	p.K1211T	0.000	297	0%	211	33.6%	0	-	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	NULL
F8	2157	genome.wustl.edu	37	X	154185319	154185319	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_000132.3	-1	reviewed	p.F555	0.759	699	0%	448	25.2%	0	-	-	-	-	superfamily_Cupredoxins
VBP1	7411	genome.wustl.edu	37	X	154464563	154464563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	NM_003372.5	+1	reviewed	p.K146N	1.000	328	0%	156	46.8%	13	100%	benign(0.04)	tolerated(0.19)	neutral(0.052)	HMMPfam_Prefoldin,superfamily_Prefoldin
IL9R	3581	genome.wustl.edu	37	X	155231145	155231145	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Z-01A-11W-A027-09	TCGA-AX-A05Z-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	942ba171-b570-4d74-85b2-f03309815165	c28a7766-b3c3-446b-aea2-e4bc82e8040b	ENST00000369423	+1	known	p.F39	0.001	288	0%	175	38.3%	0	-	-	-	-	NULL
