Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLEKHN1	84069	genome.wustl.edu	37	1	906518	906518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032129.2	+1	validated	p.A213V	0.001	9	0.000	22	0.273	-	-	possibly_damaging(0.512)	tolerated(0.11)	neutral(0.444)	NULL
ISG15	9636	genome.wustl.edu	37	1	949415	949415	+	Silent	SNP	C	C	T	rs60405958		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005101.3	+1	validated	p.L19	0.001	18	0%	38	36.8%	-	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
SDF4	51150	genome.wustl.edu	37	1	1153099	1153099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016547.2	-1	validated	p.A333V	0.000	52	0%	124	34.7%	-	-	benign(0.008)	-	-	NULL
ATAD3C	219293	genome.wustl.edu	37	1	1398008	1398008	+	Missense_Mutation	SNP	G	G	A	rs189474682	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039211.2	+1	validated	p.G337R	1.000	24	0%	55	76.4%	-	-	benign(0.396)	tolerated(0.21)	neutral(0.171)	HMMPfam_AAA,superfamily_SSF52540
CDK11A	728642	genome.wustl.edu	37	1	1580553	1580553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000340677	-1	known	p.R191W	0.984	222	0%	389	14.7%	-	-	-	-	-	NULL
SLC35E2	9906	genome.wustl.edu	37	1	1602956	1602956	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110781.1	-1	validated	p.I233	1.000	41	0%	103	40.8%	-	-	-	-	-	HMMPfam_TPT
CDK11A	728642	genome.wustl.edu	37	1	1647897	1647897	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024011.2	-1	reviewed	p.E126*	0.986	361	0%	459	25.5%	-	-	-	-	-	NULL
C1orf222	339457	genome.wustl.edu	37	1	1857241	1857241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000493964	-1	known	p.S645F	0.192	34	0%	54	33.3%	-	-	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1897873	1897873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080484.1	-1	predicted	p.E446D	0.849	31	0%	64	31.2%	-	-	possibly_damaging(0.842)	tolerated(0.53)	neutral(0.330)	NULL
PANK4	55229	genome.wustl.edu	37	1	2440304	2440304	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018216.1	-1	reviewed	p.Y768	0.825	19	0%	32	25%	-	-	-	-	-	superfamily_Hypothetical protein At2g17340
PANK4	55229	genome.wustl.edu	37	1	2445818	2445818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018216.1	-1	reviewed	p.L488F	1.000	26	0%	61	26.2%	-	-	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_DUF89,superfamily_Hypothetical protein At2g17340
PRDM16	63976	genome.wustl.edu	37	1	3334422	3334422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022114.3	+1	reviewed	p.L907M	1.000	48	0%	86	37.2%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
MEGF6	1953	genome.wustl.edu	37	1	3428133	3428133	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000485002	-1	known	p.Q205R	0.000	25	0%	70	31.4%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
WRAP73	49856	genome.wustl.edu	37	1	3548007	3548007	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378322	-1	known	p.T421	0.000	17	0%	21	52.4%	-	-	-	-	-	NULL
CCDC27	148870	genome.wustl.edu	37	1	3669362	3669362	+	Missense_Mutation	SNP	C	C	T	rs185617592	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152492.2	+1	validated	p.T106M	0.002	26	0%	70	12.9%	-	-	probably_damaging(0.969)	tolerated(0.1)	deleterious(0.698)	NULL
DFFB	1677	genome.wustl.edu	37	1	3782527	3782527	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004402.2	+1	reviewed	p.A131	0.001	8	0.000	33	0.333	-	-	-	-	-	HMMPfam_DFF40,superfamily_His-Me finger endonucleases
NPHP4	261734	genome.wustl.edu	37	1	5923425	5923425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015102.2	-1	reviewed	p.A1394V	0.006	158	0%	278	29.9%	-	-	benign(0.009)	tolerated(0.63)	neutral(0.004)	NULL
NPHP4	261734	genome.wustl.edu	37	1	6046231	6046231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015102.2	-1	reviewed	p.G40V	0.814	108	0%	149	32.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHD5	26038	genome.wustl.edu	37	1	6188990	6188990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015557.1	-1	provisional	p.G1176D	1.000	14	0%	24	33.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
RNF207	388591	genome.wustl.edu	37	1	6270307	6270307	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207396.2	+1	validated	p.A275	0.993	45	0%	103	34%	-	-	-	-	-	NULL
RNF207	388591	genome.wustl.edu	37	1	6272392	6272392	+	Silent	SNP	C	C	T	rs182853068	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207396.2	+1	validated	p.D466	0.998	31	0%	51	47.1%	-	-	-	-	-	NULL
LINC00337	148645	genome.wustl.edu	37	1	6298938	6298938	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040930.2	+1	model	NULL	0.002	40	0%	63	39.7%	-	-	-	-	-	-
GPR153	387509	genome.wustl.edu	37	1	6314101	6314101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207370.2	-1	validated	p.R155C	1.000	22	0%	63	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TNFRSF25	8718	genome.wustl.edu	37	1	6522378	6522378	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000475730	-1	known	NULL	0.000	34	0%	89	37.1%	-	-	-	-	-	-
TAS1R1	80835	genome.wustl.edu	37	1	6631244	6631244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138697.3	+1	reviewed	p.A156V	0.982	32	0%	57	28.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
TAS1R1	80835	genome.wustl.edu	37	1	6635003	6635003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138697.3	+1	reviewed	p.V271M	0.983	36	0%	68	32.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CAMTA1	23261	genome.wustl.edu	37	1	7798420	7798420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015215.1	+1	validated	p.R1354C	1.000	54	0%	40	40%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
VAMP3	9341	genome.wustl.edu	37	1	7837288	7837288	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004781.3	+1	reviewed	p.D47	0.003	124	0%	194	32.5%	-	-	-	-	-	HMMPfam_Synaptobrevin,PatternScan_SYNAPTOBREVIN
PER3	8863	genome.wustl.edu	37	1	7897172	7897172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016831.1	+1	reviewed	p.I1162T	1.000	111	0%	59	10.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SLC45A1	50651	genome.wustl.edu	37	1	8384575	8384575	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080397.1	+1	provisional	p.P62	0.929	14	0%	32	25%	-	-	-	-	-	NULL
SLC2A7	155184	genome.wustl.edu	37	1	9070244	9070244	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207420.2	-1	provisional	p.C358	0.999	11	0%	11	36.4%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
H6PD	9563	genome.wustl.edu	37	1	9324078	9324078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004285.3	+1	reviewed	p.R509H	0.026	24	0%	55	34.5%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_SSF55347
SLC25A33	84275	genome.wustl.edu	37	1	9613727	9613727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032315.2	+1	validated	p.V34F	1.000	134	0%	82	13.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PIK3CD	5293	genome.wustl.edu	37	1	9783259	9783259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005026.3	+1	validated	p.A835T	1.000	42	0%	82	42.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
NMNAT1	64802	genome.wustl.edu	37	1	10041203	10041203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022787.3	+1	provisional	p.K138N	0.983	112	0%	92	25%	-	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
KIF1B	23095	genome.wustl.edu	37	1	10318594	10318594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015074.3	+1	reviewed	p.D76G	1.000	160	0%	108	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CASZ1	54897	genome.wustl.edu	37	1	10699932	10699932	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079843.1	-1	validated	p.Q1449	1.000	29	0%	70	38.6%	-	-	-	-	-	NULL
C1orf127	148345	genome.wustl.edu	37	1	11015225	11015225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000377008	-1	known	p.S99L	0.001	110	0%	169	38.5%	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
TARDBP	23435	genome.wustl.edu	37	1	11077011	11077011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007375.3	+1	reviewed	p.E117K	1.000	184	0%	182	40.1%	-	-	possibly_damaging(0.704)	deleterious(0)	deleterious(0.698)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MASP2	10747	genome.wustl.edu	37	1	11090818	11090818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006610.2	-1	reviewed	p.M403I	0.988	144	0%	100	35%	-	-	benign(0.316)	tolerated(0.15)	neutral(0.340)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SRM	6723	genome.wustl.edu	37	1	11115064	11115064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003132.2	-1	validated	p.S281	0.002	14	0%	27	33.3%	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ANGPTL7	10218	genome.wustl.edu	37	1	11253721	11253721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021146.2	+1	provisional	p.W188R	1.000	97	0%	66	45.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FBXO2	26232	genome.wustl.edu	37	1	11710617	11710617	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012168.4	-1	reviewed	p.P99	0.874	7	0.000	12	0.417	-	-	-	-	-	superfamily_F-box domain
MAD2L2	10459	genome.wustl.edu	37	1	11737002	11737002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127325.1	-1	reviewed	p.D79N	1.000	133	0%	259	33.6%	-	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
C1orf187	374946	genome.wustl.edu	37	1	11766740	11766740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198545.3	+1	validated	p.R142H	0.966	35	0%	51	43.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CLCN6	1185	genome.wustl.edu	37	1	11898475	11898475	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001286.2	+1	reviewed	p.T793	0.004	78	0%	108	37%	-	-	-	-	-	HMMPfam_CBS
MFN2	9927	genome.wustl.edu	37	1	12066710	12066710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127660.1	+1	reviewed	p.T611I	1.000	120	0%	191	31.4%	-	-	probably_damaging(0.965)	tolerated(0.1)	deleterious(0.694)	HMMPfam_Fzo_mitofusin
AADACL4	343066	genome.wustl.edu	37	1	12726558	12726558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013630.1	+1	provisional	p.N346D	0.093	37	0%	20	35%	-	-	possibly_damaging(0.602)	deleterious(0.05)	deleterious(0.554)	HMMPfam_Abhydrolase_3,superfamily_SSF53474
PRAMEF1	65121	genome.wustl.edu	37	1	12854205	12854205	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023013.1	+1	provisional	p.E143	0.000	292	0%	188	23.9%	-	-	-	-	-	superfamily_SSF52047
HNRNPCL1	343069	genome.wustl.edu	37	1	12908008	12908008	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013631.1	-1	validated	p.G45	1.000	447	0%	167	16.8%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PRDM2	7799	genome.wustl.edu	37	1	14108992	14108992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012231.4	+1	reviewed	p.P1568S	0.958	43	0%	42	21.4%	-	-	possibly_damaging(0.525)	deleterious(0.04)	deleterious(0.526)	NULL
CTRC	11330	genome.wustl.edu	37	1	15768952	15768952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375943	+1	known	p.G17E	0.007	28	0%	37	40.5%	-	-	unknown(0)	-	-	NULL
CTRC	11330	genome.wustl.edu	37	1	15769968	15769968	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007272.2	+1	reviewed	p.I137	1.000	48	0%	74	25.7%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FBLIM1	54751	genome.wustl.edu	37	1	16091636	16091636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024215.1	+1	reviewed	p.E53G	0.343	21	0%	32	50%	-	-	benign(0)	tolerated(1)	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16254911	16254912	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015001.2	+1	reviewed	p.S727fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CLCNKA	1187	genome.wustl.edu	37	1	16358283	16358283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004070.3	+1	reviewed	p.V567	0.944	75	0%	150	30.7%	-	-	-	-	-	HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631
CLCNKA	1187	genome.wustl.edu	37	1	16359706	16359706	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004070.3	+1	reviewed	p.F657	0.015	144	0%	261	45.2%	-	-	-	-	-	HMMPfam_CBS
CROCC	9696	genome.wustl.edu	37	1	17257067	17257067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014675.3	+1	validated	p.A276V	1.000	25	0%	57	36.8%	-	-	unknown(0)	tolerated(0.12)	-	NULL
CROCC	9696	genome.wustl.edu	37	1	17272853	17272853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014675.3	+1	validated	p.E746K	1.000	13	0%	42	31%	-	-	unknown(0)	tolerated(0.22)	-	NULL
ARHGEF10L	55160	genome.wustl.edu	37	1	17914012	17914012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018125.3	+1	validated	p.G32E	1.000	65	0%	114	34.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACTL8	81569	genome.wustl.edu	37	1	18152706	18152706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030812.2	+1	validated	p.F265L	0.964	18	0%	27	37%	-	-	possibly_damaging(0.465)	tolerated(1)	neutral(0.153)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PAX7	5081	genome.wustl.edu	37	1	19071417	19071417	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135254.1	+1	reviewed	p.A504	1.000	23	0%	39	17.9%	-	-	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19421438	19421438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020765.2	-1	validated	p.L4570I	1.000	75	0%	67	38.8%	-	-	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19452988	19452988	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020765.2	-1	validated	p.T3130	0.159	278	0%	112	33%	-	-	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19455505	19455505	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020765.2	-1	validated	p.N2990	0.649	90	0%	29	51.7%	-	-	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19487588	19487588	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020765.2	-1	validated	p.S1743	0.092	87	0%	32	40.6%	-	-	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19526243	19526243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020765.2	-1	validated	p.R94W	0.998	94	0%	51	43.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
AKR7A3	22977	genome.wustl.edu	37	1	19611574	19611574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012067.2	-1	validated	p.T181M	0.950	81	0%	138	35.5%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR7A2	8574	genome.wustl.edu	37	1	19630787	19630787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003689.2	-1	validated	p.A338T	0.018	64	0%	86	38.4%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Aldo/ket_red
CAPZB	832	genome.wustl.edu	37	1	19670864	19670864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375145	-1	known	p.V302A	1.000	279	0%	450	37.6%	-	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_F_actin_cap_B,superfamily_Subunits of heterodimeric actin filament capping protein Capz
HTR6	3362	genome.wustl.edu	37	1	19992508	19992508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000871.1	+1	provisional	p.L88	1.000	26	0%	50	58%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PLA2G5	5322	genome.wustl.edu	37	1	20416366	20416366	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000929.2	+1	reviewed	p.F90	0.000	79	0%	74	32.4%	-	-	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
PLA2G2C	391013	genome.wustl.edu	37	1	20490611	20490611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105572.1	-1	provisional	p.R109M	0.996	61	0%	71	53.5%	-	-	benign(0.301)	tolerated(0.08)	neutral(0.393)	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
MUL1	79594	genome.wustl.edu	37	1	20827756	20827756	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024544.2	-1	validated	p.S162	0.000	41	0%	53	41.5%	-	-	-	-	-	NULL
PINK1	65018	genome.wustl.edu	37	1	20975080	20975080	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032409.2	+1	reviewed	p.S402	1.000	34	0%	47	40.4%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIF17	57576	genome.wustl.edu	37	1	20991156	20991156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020816.2	-1	validated	p.R1004H	1.000	94	0%	157	33.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF17	57576	genome.wustl.edu	37	1	21009304	21009304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020816.2	-1	validated	p.R769W	0.985	49	0%	81	40.7%	-	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
KIF17	57576	genome.wustl.edu	37	1	21042054	21042054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020816.2	-1	validated	p.L104M	1.000	46	0%	63	31.7%	-	-	possibly_damaging(0.946)	tolerated(0.18)	neutral(0.446)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
RAP1GAP	5909	genome.wustl.edu	37	1	21936747	21936747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145658.1	-1	validated	p.G353R	1.000	32	0%	46	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
CELA3B	23436	genome.wustl.edu	37	1	22310808	22310808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007352.2	+1	reviewed	p.I209T	0.000	82	0%	106	28.3%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZBTB40	9923	genome.wustl.edu	37	1	22850917	22850917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083621.1	+1	validated	p.A1169T	0.582	61	0%	61	50.8%	-	-	benign(0.006)	tolerated(0.36)	neutral(0.020)	NULL
C1QA	712	genome.wustl.edu	37	1	22965626	22965626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015991.2	+1	reviewed	p.V155A	0.998	40	0%	77	36.4%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
EPHB2	2048	genome.wustl.edu	37	1	23111076	23111076	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004442.6	+1	reviewed	p.S106	1.000	44	0%	73	28.8%	-	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
RPL11	6135	genome.wustl.edu	37	1	24022315	24022315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000975.2	+1	reviewed	p.A142T	1.000	145	0%	144	41.7%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Ribosomal_L5_C,superfamily_Ribosomal protein L5
PITHD1	57095	genome.wustl.edu	37	1	24112833	24112833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020362.4	+1	validated	p.L152I	1.000	405	0%	434	32.5%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_DUF1000
GALE	2582	genome.wustl.edu	37	1	24124347	24124347	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000403.3	-1	reviewed	p.H122	0.973	55	0%	87	34.5%	-	-	-	-	-	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
IL28RA	163702	genome.wustl.edu	37	1	24483645	24483645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170743.2	-1	reviewed	p.T513I	0.000	43	0%	53	50.9%	-	-	benign(0.323)	tolerated(0.3)	neutral(0.130)	NULL
RUNX3	864	genome.wustl.edu	37	1	25228777	25228777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031680.2	-1	reviewed	p.A376T	0.996	8	0.000	20	0.350	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_RunxI
TMEM50A	23585	genome.wustl.edu	37	1	25667022	25667022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014313.2	+1	reviewed	p.D15E	0.908	144	0%	192	41.1%	-	-	benign(0.006)	tolerated(0.22)	neutral(0.042)	HMMPfam_UPF0220
SEPN1	57190	genome.wustl.edu	37	1	26138361	26138361	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000354177	+1	known	p.P390	1.000	25	0%	55	21.8%	-	-	-	-	-	NULL
FAM54B	56181	genome.wustl.edu	37	1	26153116	26153116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099625.1	+1	validated	p.R84C	0.991	38	0%	35	34.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF729
C1orf135	79000	genome.wustl.edu	37	1	26162312	26162312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024037.1	-1	provisional	p.K82	0.023	291	0%	153	40.5%	-	-	-	-	-	NULL
PAQR7	164091	genome.wustl.edu	37	1	26189688	26189688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178422.4	-1	validated	p.A215T	0.134	38	0%	49	42.9%	-	-	benign(0.018)	tolerated(0.27)	neutral(0.034)	HMMPfam_HlyIII
PAQR7	164091	genome.wustl.edu	37	1	26190021	26190021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178422.4	-1	validated	p.A104T	0.997	32	0%	45	11.1%	-	-	benign(0.047)	tolerated(0.14)	neutral(0.253)	HMMPfam_HlyIII
EXTL1	2134	genome.wustl.edu	37	1	26359729	26359729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004455.2	+1	reviewed	p.R481C	1.000	55	0%	81	11.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_64,superfamily_SSF53448
SLC30A2	7780	genome.wustl.edu	37	1	26366370	26366370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004434.1	-1	validated	p.R291C	0.019	47	0%	63	33.3%	-	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Cation_efflux
CNKSR1	10256	genome.wustl.edu	37	1	26515800	26515800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006314.2	+1	reviewed	p.E635*	1.000	73	0%	103	26.2%	-	-	-	-	-	NULL
CATSPER4	378807	genome.wustl.edu	37	1	26524491	26524491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198137.1	+1	validated	p.A201T	1.000	87	0%	104	41.3%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZDHHC18	84243	genome.wustl.edu	37	1	27175108	27175108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032283.2	+1	validated	p.G169V	1.000	27	0%	25	28%	-	-	benign(0.214)	tolerated(0.11)	neutral(0.293)	NULL
ZDHHC18	84243	genome.wustl.edu	37	1	27177048	27177048	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032283.2	+1	validated	e5-1	1.000	149	0%	185	31.4%	-	-	-	-	-	-
SLC9A1	6548	genome.wustl.edu	37	1	27434331	27434331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003047.3	-1	validated	p.R364C	1.000	16	0%	39	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_H_Exchanger
WDTC1	23038	genome.wustl.edu	37	1	27632780	27632780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015023.3	+1	validated	p.M646T	1.000	39	0%	47	42.6%	-	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
WASF2	10163	genome.wustl.edu	37	1	27742567	27742567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006990.2	-1	reviewed	p.Y150C	1.000	266	0%	168	39.3%	-	-	unknown(0)	deleterious(0)	-	NULL
C1orf38	9473	genome.wustl.edu	37	1	28206192	28206192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105556.1	+1	validated	p.E91D	0.025	141	0%	211	36.5%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
C1orf38	9473	genome.wustl.edu	37	1	28208706	28208706	+	Missense_Mutation	SNP	G	G	A	rs192452720	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105556.1	+1	validated	p.V291I	0.224	15	0%	24	25%	-	-	benign(0.001)	tolerated(1)	-	NULL
C1orf38	9473	genome.wustl.edu	37	1	28209377	28209377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000456990	+1	known	p.G262D	0.000	56	0%	76	38.2%	-	-	-	-	-	NULL
XKR8	55113	genome.wustl.edu	37	1	28293190	28293190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018053.2	+1	provisional	p.A223T	0.035	45	0%	61	29.5%	-	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_XK-related
EYA3	2140	genome.wustl.edu	37	1	28339780	28339780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001990.2	-1	reviewed	p.G204D	1.000	121	0%	53	41.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHACTR4	65979	genome.wustl.edu	37	1	28792956	28792956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023923.3	+1	reviewed	p.P177H	0.977	146	0%	130	34.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPRU	10076	genome.wustl.edu	37	1	29609287	29609287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000323874	+1	known	p.A652T	0.774	25	0%	43	46.5%	-	-	-	-	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29633659	29633659	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133177.2	+1	reviewed	e19+1	1.000	138	0%	190	28.9%	-	-	-	-	-	-
PTPRU	10076	genome.wustl.edu	37	1	29641894	29641894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005704.3	+1	reviewed	p.G1090S	1.000	98	0%	158	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
LOC100288450	100288450	genome.wustl.edu	37	1	29814891	29814891	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342037.1	-1	model	p.Y51	0.999	35	0%	37	13.5%	-	-	-	-	-	NULL
LAPTM5	7805	genome.wustl.edu	37	1	31210499	31210499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006762.2	-1	reviewed	p.K186N	0.999	185	0%	196	40.3%	-	-	benign(0.005)	tolerated(0.83)	neutral(0.001)	HMMPfam_Mtp
LAPTM5	7805	genome.wustl.edu	37	1	31214495	31214495	+	Missense_Mutation	SNP	C	C	T	rs183822203	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006762.2	-1	reviewed	p.V84I	0.948	71	0%	95	36.8%	-	-	benign(0.111)	tolerated(0.48)	neutral(0.019)	HMMPfam_Mtp
PEF1	553115	genome.wustl.edu	37	1	32096225	32096225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012392.3	-1	reviewed	p.R282W	1.000	80	0%	76	23.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAI2	576	genome.wustl.edu	37	1	32222009	32222009	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001703.2	-1	reviewed	p.S143	0.021	19	0%	54	25.9%	-	-	-	-	-	NULL
SPOCD1	90853	genome.wustl.edu	37	1	32256723	32256723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452755	-1	known	p.E329K	0.728	13	0%	27	37%	-	-	benign(0)	-	-	HMMPfam_SPOC
SPOCD1	90853	genome.wustl.edu	37	1	32257948	32257948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144569.4	-1	provisional	p.R944C	0.998	18	0%	35	40%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_SPOC
SPOCD1	90853	genome.wustl.edu	37	1	32258997	32258997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144569.4	-1	provisional	p.A856V	0.004	28	0%	62	29%	-	-	possibly_damaging(0.861)	tolerated(0.12)	deleterious(0.594)	NULL
TMEM39B	55116	genome.wustl.edu	37	1	32557412	32557412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018056.2	+1	validated	p.R243W	1.000	36	0%	52	30.8%	-	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_Tmp39
TMEM234	56063	genome.wustl.edu	37	1	32682831	32682831	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000373593	-1	known	p.T119	0.000	80	0%	127	35.4%	-	-	-	-	-	HMMPfam_UPF0546
LCK	3932	genome.wustl.edu	37	1	32745264	32745264	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000373562	+1	known	p.L349	0.002	43	0%	56	39.3%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
HDAC1	3065	genome.wustl.edu	37	1	32782343	32782343	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004964.2	+1	reviewed	p.R80	0.982	99	0%	72	31.9%	-	-	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
ZSCAN20	7579	genome.wustl.edu	37	1	33960946	33960946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145238.3	+1	validated	p.S1001N	0.912	106	0%	43	34.9%	-	-	benign(0.034)	tolerated(0.12)	neutral(0.263)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSMD2	114784	genome.wustl.edu	37	1	34008405	34008405	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052896.3	-1	validated	p.C2920	0.996	57	0%	30	33.3%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34046420	34046420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052896.3	-1	validated	p.N2442K	0.966	109	0%	66	39.4%	-	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34554641	34554641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052896.3	-1	validated	p.E74A	1.000	93	0%	107	29.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
LOC100287174	100287174	genome.wustl.edu	37	1	35250588	35250588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342072.1	-1	model	p.A216T	1.000	243	0%	370	34.6%	-	-	-	-	-	NULL
DLGAP3	58512	genome.wustl.edu	37	1	35370109	35370109	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080418.1	-1	provisional	p.P292	0.851	30	0%	70	37.1%	-	-	-	-	-	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35579880	35579880	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024772.3	+1	validated	p.L817	0.000	99	0%	112	39.3%	-	-	-	-	-	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35847337	35847337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005095.2	+1	validated	p.S516L	0.001	229	0%	146	41.8%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_zf-FCS,HMMSmart_SM00746
EIF2C1	26523	genome.wustl.edu	37	1	36354167	36354167	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012199.2	+1	reviewed	p.Y55	1.000	63	0%	36	36.1%	-	-	-	-	-	superfamily_PAZ domain
SH3D21	79729	genome.wustl.edu	37	1	36773736	36773736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453908	+1	known	p.L78M	1.000	47	0%	91	37.4%	-	-	possibly_damaging(0.685)	tolerated(0.15)	deleterious(0.485)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
ZC3H12A	80149	genome.wustl.edu	37	1	37948838	37948838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025079.2	+1	validated	p.S476P	0.000	31	0%	58	39.7%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SNIP1	79753	genome.wustl.edu	37	1	38003480	38003480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024700.2	-1	provisional	p.E354*	1.000	380	0%	276	11.2%	-	-	-	-	-	HMMPfam_FHA,superfamily_SMAD/FHA domain
SNIP1	79753	genome.wustl.edu	37	1	38005927	38005927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024700.2	-1	provisional	p.R253C	1.000	76	0%	91	38.5%	-	-	possibly_damaging(0.806)	tolerated(0.09)	deleterious(0.600)	superfamily_SMAD/FHA domain
RSPO1	284654	genome.wustl.edu	37	1	38080006	38080006	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001038633.2	-1	reviewed	e3-1	1.000	37	0%	37	40.5%	-	-	-	-	-	-
EPHA10	284656	genome.wustl.edu	37	1	38184399	38184399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099439.1	-1	validated	p.R949H	1.000	26	3.8%	25	64%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
EPHA10	284656	genome.wustl.edu	37	1	38227201	38227201	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099439.1	-1	validated	p.A242	0.937	40	0%	69	47.8%	-	-	-	-	-	NULL
EPHA10	284656	genome.wustl.edu	37	1	38228491	38228491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099439.1	-1	validated	p.A46V	1.000	161	0%	258	37.2%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
MTF1	4520	genome.wustl.edu	37	1	38305682	38305682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005955.2	-1	reviewed	p.S186N	1.000	116	0%	59	35.6%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SF3A3	10946	genome.wustl.edu	37	1	38444398	38444398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006802.2	-1	reviewed	p.T310I	1.000	151	0%	93	39.8%	-	-	possibly_damaging(0.717)	tolerated(0.21)	neutral(0.303)	NULL
UTP11L	51118	genome.wustl.edu	37	1	38484984	38484984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016037.3	+1	validated	p.F166V	1.000	124	0%	105	22.9%	-	-	benign(0.009)	tolerated(0.26)	neutral(0.035)	HMMPfam_Utp11
POU3F1	5453	genome.wustl.edu	37	1	38511475	38511475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002699.3	-1	validated	p.N314S	1.000	24	0%	44	25%	-	-	benign(0.156)	tolerated(0.09)	neutral(0.310)	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
MACF1	23499	genome.wustl.edu	37	1	39812757	39812757	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033044.2	+1	reviewed	p.R2004*	1.000	62	1.6%	43	44.2%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39880151	39880151	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000482035	+1	known	NULL	1.000	150	0%	206	29.1%	-	-	unknown(0)	-	-	-
RLF	6018	genome.wustl.edu	37	1	40627264	40627264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012421.3	+1	validated	p.V65M	1.000	94	0%	153	32%	-	-	probably_damaging(0.97)	tolerated(0.1)	deleterious(0.699)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40747072	40747072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005857.3	+1	reviewed	p.R276Q	1.000	135	0%	87	40.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Peptidase_M48
COL9A2	1298	genome.wustl.edu	37	1	40767517	40767517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001852.3	-1	reviewed	p.H613Y	1.000	37	0%	95	30.5%	-	-	probably_damaging(0.987)	tolerated(0.44)	neutral(0.449)	NULL
COL9A2	1298	genome.wustl.edu	37	1	40769625	40769625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001852.3	-1	reviewed	p.G448V	1.000	16	0%	49	40.8%	-	-	unknown(0)	-	-	HMMPfam_Collagen
KCNQ4	9132	genome.wustl.edu	37	1	41300693	41300693	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000509682	+1	known	p.R422*	0.990	36	0%	59	37.3%	-	-	-	-	-	HMMPfam_KCNQ_channel
HIVEP3	59269	genome.wustl.edu	37	1	42045804	42045804	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024503.3	-1	validated	p.D1555E	0.945	96	1%	70	12.9%	-	-	possibly_damaging(0.945)	tolerated(0.48)	neutral(0.400)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42047866	42047866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024503.3	-1	validated	p.D868G	1.000	76	0%	81	24.7%	-	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
GUCA2B	2981	genome.wustl.edu	37	1	42620359	42620359	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007102.2	+1	validated	p.G33	1.000	18	0%	37	40.5%	-	-	-	-	-	HMMPfam_Guanylin,superfamily_Guanylin
GUCA2B	2981	genome.wustl.edu	37	1	42621244	42621244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007102.2	+1	validated	p.V106I	0.030	67	0%	83	44.6%	-	-	benign(0.185)	tolerated(0.3)	neutral(0.045)	HMMPfam_Guanylin,superfamily_Guanylin
FOXJ3	22887	genome.wustl.edu	37	1	42647693	42647693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014947.3	-1	validated	p.N550H	1.000	131	0%	154	33.8%	-	-	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42664774	42664774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014947.3	-1	validated	p.P253L	1.000	133	0%	34	14.7%	-	-	possibly_damaging(0.69)	tolerated(0.07)	deleterious(0.566)	NULL
ZMYND12	84217	genome.wustl.edu	37	1	42915659	42915659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032257.4	-1	validated	p.R61H	1.000	84	0%	67	29.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43011123	43011123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080850.2	+1	validated	p.T100A	0.624	79	0%	66	27.3%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
CLDN19	149461	genome.wustl.edu	37	1	43205555	43205555	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148960.2	-1	reviewed	p.G60	0.161	20	0%	33	30.3%	-	-	-	-	-	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
CLDN19	149461	genome.wustl.edu	37	1	43205585	43205585	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148960.2	-1	reviewed	p.L50	1.000	17	0%	42	45.2%	-	-	-	-	-	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
LEPRE1	64175	genome.wustl.edu	37	1	43221254	43221254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022356.3	-1	reviewed	p.A379T	1.000	113	0%	155	39.4%	-	-	possibly_damaging(0.527)	deleterious(0.01)	deleterious(0.584)	NULL
C1orf50	79078	genome.wustl.edu	37	1	43240481	43240481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024097.2	+1	predicted	p.I119S	1.000	135	0%	134	32.1%	-	-	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_DUF2452
ZNF691	51058	genome.wustl.edu	37	1	43317424	43317424	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015911.2	+1	provisional	p.S265	0.321	27	0%	35	37.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TIE1	7075	genome.wustl.edu	37	1	43775103	43775103	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005424.2	+1	provisional	p.F411	0.783	132	0%	254	37.8%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
CDC20	991	genome.wustl.edu	37	1	43826244	43826244	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001255.2	+1	reviewed	p.W276*	1.000	145	0%	321	36.8%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PTPRF	5792	genome.wustl.edu	37	1	44058142	44058142	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000414879	+1	known	p.R86*	1.000	71	0%	143	32.2%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44069680	44069680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002840.3	+1	reviewed	p.V953M	0.893	33	0%	68	42.6%	-	-	possibly_damaging(0.932)	tolerated(0.16)	neutral(0.438)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44071037	44071037	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429895	+1	known	p.R750H	0.000	24	0%	65	32.3%	-	-	-	-	-	superfamily_Fibronectin type III
PTPRF	5792	genome.wustl.edu	37	1	44072576	44072576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002840.3	+1	reviewed	p.T1265M	1.000	55	0%	91	36.3%	-	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
KDM4A	9682	genome.wustl.edu	37	1	44154669	44154669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014663.2	+1	reviewed	p.R647Q	1.000	54	0%	41	36.6%	-	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
ST3GAL3	6487	genome.wustl.edu	37	1	44386553	44386553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174963.2	+1	reviewed	p.A400T	1.000	63	0%	45	42.2%	-	-	possibly_damaging(0.506)	tolerated(0.22)	neutral(0.212)	HMMPfam_Glyco_transf_29
IPO13	9670	genome.wustl.edu	37	1	44433277	44433277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014652.3	+1	reviewed	p.R939W	1.000	57	0%	102	36.3%	-	-	possibly_damaging(0.459)	deleterious(0.01)	deleterious(0.556)	NULL
DPH2	1802	genome.wustl.edu	37	1	44438205	44438205	+	Silent	SNP	C	C	T	rs185345056	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001384.4	+1	reviewed	p.S488	0.144	92	0%	115	41.7%	-	-	-	-	-	NULL
ATP6V0B	533	genome.wustl.edu	37	1	44442487	44442487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004047.3	+1	reviewed	p.Y131H	1.000	68	0%	110	26.4%	-	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	superfamily_F1F0 ATP synthase subunit C
B4GALT2	8704	genome.wustl.edu	37	1	44447522	44447522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005417.1	+1	reviewed	p.R159C	0.999	36	0%	66	25.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
CCDC24	149473	genome.wustl.edu	37	1	44461614	44461614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152499.1	+1	provisional	p.R236W	0.001	24	0%	69	34.8%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ERI3	79033	genome.wustl.edu	37	1	44818545	44818545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024066.1	-1	validated	p.L63P	1.000	119	0%	196	33.2%	-	-	unknown(0)	deleterious(0)	-	NULL
RNF220	55182	genome.wustl.edu	37	1	45079902	45079902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018150.2	+1	validated	p.L231M	1.000	44	0%	84	36.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIF2C	11004	genome.wustl.edu	37	1	45221637	45221637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006845.3	+1	validated	p.R266C	1.000	86	1.2%	114	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLK3	1263	genome.wustl.edu	37	1	45271310	45271310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004073.2	+1	validated	p.R634L	0.215	32	0%	99	43.4%	-	-	unknown(0)	tolerated(0.07)	-	HMMPfam_POLO_box,superfamily_Polo-box domain
BTBD19	149478	genome.wustl.edu	37	1	45274551	45274551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136537.1	+1	provisional	p.R20Q	0.991	83	0%	139	35.3%	-	-	possibly_damaging(0.676)	tolerated(0.44)	neutral(0.253)	superfamily_POZ domain,HMMPfam_BTB
EIF2B3	8891	genome.wustl.edu	37	1	45341352	45341352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020365.3	-1	reviewed	p.S331P	0.964	165	0%	249	39.8%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Nucleotide-diphospho-sugar transferases
TESK2	10420	genome.wustl.edu	37	1	45887508	45887508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007170.2	-1	reviewed	p.R78Q	1.000	202	0%	106	39.6%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
NASP	4678	genome.wustl.edu	37	1	46072179	46072179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172164.1	+1	reviewed	p.A111T	1.000	269	0%	109	25.7%	-	-	possibly_damaging(0.8)	deleterious(0.02)	deleterious(0.684)	superfamily_SSF48452
LRRC41	10489	genome.wustl.edu	37	1	46746986	46746986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006369.4	-1	validated	p.R523C	1.000	38	0%	43	46.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
CYP4B1	1580	genome.wustl.edu	37	1	47276555	47276555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099772.1	+1	reviewed	p.G86R	0.994	88	0%	54	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4A11	1579	genome.wustl.edu	37	1	47402352	47402352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000778.3	-1	reviewed	p.S165Y	0.900	49	0%	31	12.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4X1	260293	genome.wustl.edu	37	1	47505098	47505098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178033.1	+1	reviewed	p.A323T	0.807	69	0%	18	44.4%	-	-	benign(0.012)	deleterious(0)	neutral(0.445)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4Z1	199974	genome.wustl.edu	37	1	47583466	47583466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178134.2	+1	reviewed	p.I460L	0.085	70	0%	17	47.1%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4A22	284541	genome.wustl.edu	37	1	47614435	47614435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010969.2	+1	reviewed	p.L509P	0.057	85	0%	61	32.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48695018	48695018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135181.1	+1	validated	p.A156T	0.998	152	0%	115	35.7%	-	-	benign(0.369)	tolerated(0.23)	neutral(0.159)	HMMPfam_SSF
SLC5A9	200010	genome.wustl.edu	37	1	48713023	48713023	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135181.1	+1	validated	p.W643*	0.029	89	0%	30	13.3%	-	-	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49100185	49100185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032785.3	-1	validated	p.V311I	0.936	135	0%	66	39.4%	-	-	benign(0.301)	tolerated(0.74)	neutral(0.095)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
TTC39A	22996	genome.wustl.edu	37	1	51755769	51755769	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144832.1	-1	validated	p.D471	0.991	82	0%	83	9.6%	-	-	-	-	-	HMMPfam_Deme6,superfamily_SSF48452
OSBPL9	114883	genome.wustl.edu	37	1	52237825	52237825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148909.1	+1	reviewed	p.S351Y	1.000	179	0%	106	42.5%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Oxysterol_BP
GPX7	2882	genome.wustl.edu	37	1	53072457	53072457	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015696.4	+1	validated	p.N80	0.208	56	0%	86	27.9%	-	-	-	-	-	HMMPfam_GSHPx,superfamily_Thiordxn-like_fd
PODN	127435	genome.wustl.edu	37	1	53542934	53542934	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153703.3	+1	validated	p.N266	0.614	24	0%	70	35.7%	-	-	-	-	-	superfamily_SSF52058
LRP8	7804	genome.wustl.edu	37	1	53716457	53716457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004631.3	-1	reviewed	p.F861V	1.000	408	0%	172	34.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LRP8	7804	genome.wustl.edu	37	1	53732282	53732282	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004631.3	-1	reviewed	p.H430	0.032	120	0%	113	44.2%	-	-	-	-	-	superfamily_YWTD domain
DIO1	1733	genome.wustl.edu	37	1	54360005	54360005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039715.1	+1	reviewed	p.I41N	0.986	211	0%	199	17.1%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_T4_deiodinase
LDLRAD1	388633	genome.wustl.edu	37	1	54474768	54474768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010978.2	-1	provisional	p.R169C	0.841	19	0%	45	37.8%	-	-	possibly_damaging(0.511)	deleterious(0.01)	deleterious(0.577)	HMMSmart_SM00192,superfamily_LDL receptor-like module
CDCP2	200008	genome.wustl.edu	37	1	54607054	54607054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201546.2	-1	provisional	p.E160D	0.976	47	0%	63	30.2%	-	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
HEATR8	374977	genome.wustl.edu	37	1	55139413	55139413	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039464.2	+1	validated	p.R579*	0.978	100	0%	113	43.4%	-	-	-	-	-	superfamily_ARM repeat
HEATR8	374977	genome.wustl.edu	37	1	55166045	55166045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039464.2	+1	validated	p.R1006W	0.999	14	0%	26	30.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
DHCR24	1718	genome.wustl.edu	37	1	55349398	55349398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014762.3	-1	reviewed	p.R94C	1.000	150	0%	223	10.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_FAD-binding_2
TMEM61	199964	genome.wustl.edu	37	1	55457569	55457569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182532.1	+1	provisional	p.E142D	0.006	28	0%	42	35.7%	-	-	benign(0.146)	-	-	NULL
PCSK9	255738	genome.wustl.edu	37	1	55521671	55521671	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174936.2	+1	reviewed	p.E269*	1.000	20	0%	49	36.7%	-	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PPAP2B	8613	genome.wustl.edu	37	1	57002743	57002743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003713.3	-1	reviewed	p.P61S	1.000	146	0%	44	40.9%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
PRKAA2	5563	genome.wustl.edu	37	1	57157066	57157066	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006252.3	+1	validated	e3-1	1.000	140	0.7%	66	28.8%	-	-	-	-	-	-
PRKAA2	5563	genome.wustl.edu	37	1	57169668	57169668	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006252.3	+1	validated	p.D271	0.996	151	0%	73	34.2%	-	-	-	-	-	superfamily_Kinase_like
DAB1	1600	genome.wustl.edu	37	1	57536735	57536735	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021080.3	-1	reviewed	e6-1	1.000	118	0%	32	43.8%	-	-	-	-	-	-
OMA1	115209	genome.wustl.edu	37	1	59004545	59004545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145243.3	-1	provisional	p.R141Q	0.000	124	0%	69	46.4%	-	-	benign(0.034)	tolerated(0.21)	neutral(0.046)	NULL
MYSM1	114803	genome.wustl.edu	37	1	59131183	59131183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085487.1	-1	provisional	p.D718N	1.000	165	0%	35	37.1%	-	-	benign(0.424)	tolerated(0.14)	neutral(0.387)	NULL
CYP2J2	1573	genome.wustl.edu	37	1	60381651	60381651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000775.2	-1	reviewed	p.R111H	1.000	154	0%	77	31.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
L1TD1	54596	genome.wustl.edu	37	1	62672877	62672877	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019079.4	+1	validated	p.E193*	0.068	80	0%	58	37.9%	-	-	-	-	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676006	62676006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019079.4	+1	validated	p.K520N	0.000	50	0%	35	45.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
USP1	7398	genome.wustl.edu	37	1	62916468	62916468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017415.1	+1	reviewed	p.N725T	0.000	144	0%	88	31.8%	-	-	benign(0.025)	tolerated(0.69)	neutral(0.003)	HMMPfam_UCH,superfamily_SSF54001
DOCK7	85440	genome.wustl.edu	37	1	62993828	62993828	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454575	-1	known	p.V482I	0.004	116	0%	44	31.8%	-	-	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63044524	63044524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033407.2	-1	validated	p.P662H	1.000	151	0%	66	19.7%	-	-	possibly_damaging(0.658)	deleterious(0.02)	deleterious(0.616)	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63064414	63064414	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014495.2	+1	reviewed	p.T181	0.003	252	0%	69	23.2%	-	-	-	-	-	NULL
ATG4C	84938	genome.wustl.edu	37	1	63284686	63284686	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032852.2	+1	reviewed	p.W135*	1.000	74	0%	24	37.5%	-	-	-	-	-	HMMPfam_Peptidase_C54
ATG4C	84938	genome.wustl.edu	37	1	63300467	63300467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032852.2	+1	reviewed	p.D345N	1.000	325	0%	76	9.2%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Peptidase_C54
PGM1	5236	genome.wustl.edu	37	1	64125315	64125315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002633.2	+1	reviewed	p.T553M	1.000	135	0%	54	13%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Phosphoglucomutase C-terminal domain
LEPR	3953	genome.wustl.edu	37	1	66067580	66067580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002303.4	+1	reviewed	p.C447Y	1.000	99	0%	31	22.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
LEPR	3953	genome.wustl.edu	37	1	66081870	66081870	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002303.4	+1	reviewed	p.A725	0.005	231	0%	137	28.5%	-	-	-	-	-	PatternScan_HEMATOPO_REC_L_F2,superfamily_Fibronectin type III
LEPR	3953	genome.wustl.edu	37	1	66088599	66088599	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002303.4	+1	reviewed	p.L870	0.998	223	0%	63	25.4%	-	-	-	-	-	NULL
SGIP1	84251	genome.wustl.edu	37	1	67206389	67206389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032291.2	+1	validated	p.Q761H	1.000	77	0%	77	40.3%	-	-	benign(0.156)	tolerated(0.06)	neutral(0.337)	NULL
INSL5	10022	genome.wustl.edu	37	1	67263758	67263758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005478.3	-1	reviewed	p.D116N	0.000	74	0%	19	42.1%	-	-	benign(0.415)	deleterious(0.02)	deleterious(0.518)	HMMSmart_IlGF,superfamily_Insulin-like
INSL5	10022	genome.wustl.edu	37	1	67266848	67266848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005478.3	-1	reviewed	p.E19D	0.008	130	0%	32	37.5%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_Insulin-like
WDR78	79819	genome.wustl.edu	37	1	67292588	67292588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024763.4	-1	validated	p.D752N	1.000	92	0%	76	26.3%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR78	79819	genome.wustl.edu	37	1	67299384	67299384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024763.4	-1	validated	p.M633L	1.000	290	0%	142	32.4%	-	-	probably_damaging(0.961)	tolerated(0.15)	deleterious(0.645)	superfamily_WD40 repeat-like
WDR78	79819	genome.wustl.edu	37	1	67301358	67301358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024763.4	-1	validated	p.A562T	0.096	104	0%	36	11.1%	-	-	possibly_damaging(0.599)	deleterious(0.04)	deleterious(0.556)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR78	79819	genome.wustl.edu	37	1	67306345	67306345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024763.4	-1	validated	p.P434L	0.998	215	0%	47	29.8%	-	-	benign(0.157)	tolerated(0.21)	neutral(0.058)	superfamily_WD40 repeat-like
MIER1	57708	genome.wustl.edu	37	1	67436528	67436528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020948.3	+1	validated	p.E241D	0.338	97	0%	42	42.9%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_ELM2
RPE65	6121	genome.wustl.edu	37	1	68896749	68896749	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000329.2	-1	reviewed	p.D483	0.998	79	0%	22	45.5%	-	-	-	-	-	HMMPfam_RPE65
RPE65	6121	genome.wustl.edu	37	1	68905294	68905294	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000329.2	-1	reviewed	p.I225	0.999	263	0%	95	31.6%	-	-	-	-	-	HMMPfam_RPE65
LRRC7	57554	genome.wustl.edu	37	1	70504275	70504275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020794.2	+1	validated	p.P885H	0.959	54	0%	28	21.4%	-	-	benign(0.11)	deleterious(0)	neutral(0.453)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75038491	75038491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002912.4	-1	validated	p.D968G	0.000	214	0%	93	34.4%	-	-	benign(0.002)	tolerated(0.79)	neutral(0.001)	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75685026	75685026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152697.4	-1	validated	p.F394L	0.997	124	0%	37	45.9%	-	-	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_DUF580
ACADM	34	genome.wustl.edu	37	1	76194134	76194134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127328.1	+1	reviewed	p.A31S	0.646	222	0%	205	37.1%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
MSH4	4438	genome.wustl.edu	37	1	76345749	76345749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002440.2	+1	validated	p.K564N	1.000	142	0%	21	38.1%	-	-	possibly_damaging(0.898)	deleterious(0.03)	deleterious(0.719)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH4	4438	genome.wustl.edu	37	1	76355043	76355043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002440.2	+1	validated	p.E739*	1.000	59	0%	28	28.6%	-	-	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
ST6GALNAC3	256435	genome.wustl.edu	37	1	77094402	77094402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152996.2	+1	validated	p.H277N	1.000	142	0%	37	51.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
PIGK	10026	genome.wustl.edu	37	1	77632504	77632504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005482.2	-1	reviewed	p.E129D	1.000	37	0%	18	50%	-	-	possibly_damaging(0.933)	deleterious(0.05)	deleterious(0.724)	HMMPfam_Peptidase_C13
AK5	26289	genome.wustl.edu	37	1	78024325	78024325	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174858.1	+1	reviewed	p.Q553	0.552	179	0%	83	34.9%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZZZ3	26009	genome.wustl.edu	37	1	78031418	78031418	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015534.4	-1	provisional	p.Y873	1.000	212	0%	70	51.4%	-	-	-	-	-	NULL
ZZZ3	26009	genome.wustl.edu	37	1	78044498	78044498	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015534.4	-1	provisional	p.V713	1.000	226	0%	97	21.6%	-	-	-	-	-	superfamily_Homeodomain-like
FUBP1	8880	genome.wustl.edu	37	1	78433329	78433329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003902.3	-1	reviewed	p.P91L	0.998	155	0%	55	43.6%	-	-	benign(0.081)	deleterious(0.05)	neutral(0.351)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
LPHN2	23266	genome.wustl.edu	37	1	82409180	82409180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012302.2	+1	reviewed	p.R309C	1.000	136	0%	29	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OLF,HMMSmart_SM00284
TTLL7	79739	genome.wustl.edu	37	1	84394907	84394907	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024686.4	-1	validated	p.R352	1.000	186	0%	28	25%	-	-	-	-	-	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
MCOLN3	55283	genome.wustl.edu	37	1	85484930	85484930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018298.9	-1	validated	p.Q513R	1.000	143	0%	51	29.4%	-	-	benign(0.007)	tolerated(0.44)	neutral(0.013)	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85510989	85510989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018298.9	-1	validated	p.R19C	0.000	76	0%	106	38.7%	-	-	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
WDR63	126820	genome.wustl.edu	37	1	85592391	85592391	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145172.3	+1	validated	p.I770	0.017	79	0%	24	45.8%	-	-	-	-	-	superfamily_WD40 repeat-like
CLCA2	9635	genome.wustl.edu	37	1	86905887	86905887	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006536.5	+1	reviewed	p.S420	0.868	125	0%	46	32.6%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
CLCA1	1179	genome.wustl.edu	37	1	86959988	86959988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001285.3	+1	reviewed	p.D600G	1.000	158	0%	60	36.7%	-	-	possibly_damaging(0.898)	tolerated(0.15)	deleterious(0.595)	HMMPfam_DUF1973
CLCA4	22802	genome.wustl.edu	37	1	87025701	87025701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012128.3	+1	reviewed	p.E82D	0.000	101	0%	73	24.7%	-	-	benign(0.002)	tolerated(0.57)	neutral(0.006)	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87041098	87041098	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012128.3	+1	reviewed	p.S589	0.359	115	0%	23	39.1%	-	-	-	-	-	HMMPfam_DUF1973
PKN2	5586	genome.wustl.edu	37	1	89237518	89237518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006256.2	+1	validated	p.T314M	1.000	39	0%	45	28.9%	-	-	possibly_damaging(0.92)	tolerated(0.15)	deleterious(0.612)	NULL
PKN2	5586	genome.wustl.edu	37	1	89273051	89273051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006256.2	+1	validated	p.S620F	0.781	127	0%	37	32.4%	-	-	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
GTF2B	2959	genome.wustl.edu	37	1	89353033	89353033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001514.5	-1	reviewed	p.R12I	1.000	216	0%	187	42.2%	-	-	benign(0.077)	deleterious(0.02)	neutral(0.389)	superfamily_Zinc beta-ribbon
GBP2	2634	genome.wustl.edu	37	1	89587507	89587507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004120.3	-1	reviewed	p.R48H	0.953	298	0%	186	30.6%	-	-	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	HMMPfam_GBP,superfamily_SSF52540
GBP7	388646	genome.wustl.edu	37	1	89637449	89637449	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207398.2	-1	validated	p.K57T	0.767	282	0%	65	36.9%	-	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC8D	55144	genome.wustl.edu	37	1	90398628	90398628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134479.1	+1	validated	p.M1L	1.000	155	0%	87	35.6%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400677	90400677	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134479.1	+1	validated	p.R684*	1.000	89	0%	34	47.1%	-	-	-	-	-	superfamily_SSF52058
ZNF326	284695	genome.wustl.edu	37	1	90470701	90470701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182976.2	+1	validated	p.R36H	1.000	227	0%	94	41.5%	-	-	possibly_damaging(0.924)	deleterious(0.03)	deleterious(0.738)	NULL
ZNF326	284695	genome.wustl.edu	37	1	90478723	90478723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182976.2	+1	validated	p.R285*	0.973	117	0%	53	24.5%	-	-	-	-	-	NULL
BARHL2	343472	genome.wustl.edu	37	1	91178005	91178005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020063.1	-1	validated	p.R343Q	1.000	27	0%	48	43.8%	-	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91404654	91404654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201269.1	-1	validated	p.S753A	1.000	158	0%	46	37%	-	-	benign(0.067)	deleterious(0.04)	neutral(0.353)	NULL
HFM1	164045	genome.wustl.edu	37	1	91788537	91788537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430465	-1	known	p.E107*	0.983	74	0%	20	30%	-	-	possibly_damaging(0.862)	tolerated(0.1)	deleterious(0.619)	HMMPfam_Sec63
CDC7	8317	genome.wustl.edu	37	1	91978766	91978766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134419.1	+1	reviewed	p.V242I	0.993	118	0%	34	44.1%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BRDT	676	genome.wustl.edu	37	1	92446207	92446207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001726.3	+1	validated	p.A432V	1.000	44	0%	30	33.3%	-	-	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	NULL
BTBD8	284697	genome.wustl.edu	37	1	92554375	92554375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183242.3	+1	validated	p.Q90H	0.028	193	0%	112	32.1%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00225,superfamily_POZ domain
KIAA1107	23285	genome.wustl.edu	37	1	92633485	92633485	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015237.2	+1	validated	p.S24	0.913	232	0%	140	12.9%	-	-	-	-	-	NULL
GLMN	11146	genome.wustl.edu	37	1	92754610	92754610	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053274.2	-1	reviewed	p.Q165*	1.000	162	0%	73	34.2%	-	-	-	-	-	HMMPfam_FKBP12
EVI5	7813	genome.wustl.edu	37	1	93160917	93160917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005665.4	-1	validated	p.T331P	1.000	138	0%	53	17%	-	-	possibly_damaging(0.768)	deleterious(0.05)	deleterious(0.630)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
EVI5	7813	genome.wustl.edu	37	1	93201992	93201992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005665.4	-1	validated	p.D82N	1.000	410	0%	152	32.9%	-	-	possibly_damaging(0.614)	tolerated(0.11)	deleterious(0.485)	NULL
FAM69A	388650	genome.wustl.edu	37	1	93312917	93312917	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006605.3	-1	reviewed	e4-1	1.000	87	0%	53	47.2%	-	-	-	-	-	-
MTF2	22823	genome.wustl.edu	37	1	93583972	93583972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007358.3	+1	validated	p.Q235K	1.000	119	0%	60	35%	-	-	possibly_damaging(0.46)	tolerated(0.2)	neutral(0.200)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
CCDC18	343099	genome.wustl.edu	37	1	93677754	93677754	+	Silent	SNP	C	C	T	rs183557342	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000421014	+1	known	p.A223V	0.001	94	0%	42	47.6%	-	-	-	-	-	NULL
BCAR3	8412	genome.wustl.edu	37	1	94140445	94140445	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003567.2	-1	reviewed	p.P14	0.000	36	0%	36	36.1%	-	-	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94490534	94490534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000350.2	-1	reviewed	p.T1537M	1.000	96	0%	78	41%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA4	24	genome.wustl.edu	37	1	94528193	94528193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000350.2	-1	reviewed	p.A626V	0.000	56	0%	37	29.7%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
PALMD	54873	genome.wustl.edu	37	1	100152678	100152678	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017734.4	+1	validated	p.S149	1.000	161	0%	47	27.7%	-	-	-	-	-	NULL
FRRS1	391059	genome.wustl.edu	37	1	100174669	100174669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013660.2	-1	validated	p.L556F	0.993	103	0%	47	42.6%	-	-	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
AGL	178	genome.wustl.edu	37	1	100329984	100329984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000028.2	+1	reviewed	p.L168P	0.897	304	0.3%	249	42.6%	-	-	possibly_damaging(0.928)	tolerated(0.38)	neutral(0.393)	superfamily_(Trans)glycosidases
HIAT1	64645	genome.wustl.edu	37	1	100547610	100547610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033055.2	+1	validated	p.L440M	1.000	164	0%	58	46.6%	-	-	benign(0.057)	tolerated(0.18)	neutral(0.060)	superfamily_MFS_gen_substrate_transporter
RTCD1	8634	genome.wustl.edu	37	1	100752731	100752731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130841.1	+1	validated	p.A337V	0.996	153	0%	81	42%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_RTC,superfamily_EPT/RTPC-like
CDC14A	8556	genome.wustl.edu	37	1	100964688	100964688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033312.2	+1	reviewed	p.S542N	0.924	158	0%	103	38.8%	-	-	possibly_damaging(0.667)	deleterious(0.04)	deleterious(0.585)	NULL
COL11A1	1301	genome.wustl.edu	37	1	103387102	103387102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080629.2	-1	reviewed	p.R1239I	1.000	76	0%	62	29%	-	-	unknown(0)	deleterious(0.01)	-	NULL
COL11A1	1301	genome.wustl.edu	37	1	103491503	103491503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080629.2	-1	reviewed	p.K262N	1.000	320	0%	149	22.1%	-	-	benign(0.006)	tolerated(0.44)	neutral(0.013)	NULL
COL11A1	1301	genome.wustl.edu	37	1	103540264	103540264	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080629.2	-1	reviewed	p.T187	1.000	341	0%	67	28.4%	-	-	-	-	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
AMY2B	280	genome.wustl.edu	37	1	104118162	104118162	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020978.3	+1	reviewed	p.N367	1.000	308	0%	88	40.9%	-	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
VAV3	10451	genome.wustl.edu	37	1	108145688	108145688	+	Missense_Mutation	SNP	C	C	T	rs151104546	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006113.4	-1	reviewed	p.E705K	1.000	198	0%	62	58.1%	-	-	benign(0.247)	tolerated(0.16)	neutral(0.084)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
VAV3	10451	genome.wustl.edu	37	1	108231050	108231050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079874.1	-1	reviewed	p.P2S	1.000	294	0%	81	25.9%	-	-	unknown(0)	-	-	NULL
VAV3	10451	genome.wustl.edu	37	1	108322068	108322068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006113.4	-1	reviewed	p.A123V	1.000	130	0%	61	13.1%	-	-	benign(0.01)	tolerated(0.28)	neutral(0.032)	superfamily_Calponin-homology domain CH-domain
SLC25A24	29957	genome.wustl.edu	37	1	108686212	108686212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013386.3	-1	validated	p.L351V	0.007	112	0%	49	42.9%	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
HENMT1	113802	genome.wustl.edu	37	1	109191326	109191326	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102592.1	-1	validated	p.A348	0.223	116	0%	73	34.2%	-	-	-	-	-	NULL
PRPF38B	55119	genome.wustl.edu	37	1	109241410	109241410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018061.2	+1	validated	p.A248D	0.000	118	0%	84	28.6%	-	-	possibly_damaging(0.662)	tolerated(0.51)	neutral(0.243)	NULL
FNDC7	163479	genome.wustl.edu	37	1	109271412	109271412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144937.1	+1	provisional	p.R510W	0.000	60	0%	42	45.2%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00060,superfamily_Fibronectin type III
GPSM2	29899	genome.wustl.edu	37	1	109439494	109439494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013296.4	+1	validated	p.A22V	1.000	232	0%	79	35.4%	-	-	benign(0.33)	tolerated(0.2)	neutral(0.152)	superfamily_SSF48452
C1orf194	127003	genome.wustl.edu	37	1	109650569	109650569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122961.1	-1	validated	p.R46W	0.271	158	0.6%	217	11.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1324	57535	genome.wustl.edu	37	1	109656916	109656916	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020775.3	+1	validated	p.Q37	1.000	23	0%	28	46.4%	-	-	-	-	-	NULL
GNAI3	2773	genome.wustl.edu	37	1	110128884	110128884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006496.2	+1	validated	p.H213N	1.000	217	0%	96	33.3%	-	-	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
RNU6V	6071	genome.wustl.edu	37	1	110134233	110134233	+	RNA	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000384105	-1	known	NULL	0.009	169	0%	99	47.5%	-	-	-	-	-	-
AMPD2	271	genome.wustl.edu	37	1	110168974	110168974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004037.6	+1	validated	p.D206E	1.000	50	0%	107	35.5%	-	-	benign(0)	tolerated(1)	-	NULL
GSTM3	2947	genome.wustl.edu	37	1	110280934	110280934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000849.4	-1	reviewed	p.R82C	1.000	243	0%	292	36%	-	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_GST_N,superfamily_Thioredoxin-like
FAM40A	85369	genome.wustl.edu	37	1	110581331	110581331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033088.2	+1	validated	p.E93*	1.000	190	0%	183	42.1%	-	-	-	-	-	HMMPfam_N1221
FAM40A	85369	genome.wustl.edu	37	1	110589357	110589357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033088.2	+1	validated	p.R491H	1.000	60	1.7%	56	25%	-	-	possibly_damaging(0.742)	deleterious(0.02)	deleterious(0.655)	NULL
ALX3	257	genome.wustl.edu	37	1	110604106	110604106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006492.2	-1	reviewed	p.T225M	0.993	69	0%	84	41.7%	-	-	possibly_damaging(0.782)	deleterious(0.04)	deleterious(0.642)	NULL
KCNC4	3749	genome.wustl.edu	37	1	110766393	110766393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004978.3	+1	reviewed	p.V496M	0.998	72	0%	116	32.8%	-	-	benign(0.27)	deleterious(0.02)	neutral(0.412)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111739856	111739856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024901.3	-1	provisional	p.R149H	1.000	60	0%	68	36.8%	-	-	benign(0.335)	deleterious(0.04)	neutral(0.454)	HMMPfam_DENN,HMMSmart_SM00799
CHIA	27159	genome.wustl.edu	37	1	111863055	111863055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430615	+1	known	p.S396L	0.201	36	0%	27	44.4%	-	-	-	-	-	HMMPfam_CBM_14,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins
C1orf88	128344	genome.wustl.edu	37	1	111891328	111891328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452858	+1	known	p.T150M	0.049	101	0%	112	46.4%	-	-	-	-	-	NULL
ATP5F1	515	genome.wustl.edu	37	1	112002191	112002191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001688.4	+1	reviewed	p.R209Q	0.912	75	0%	28	25%	-	-	benign(0.304)	tolerated(0.06)	neutral(0.417)	HMMPfam_Mt_ATP-synt_B
ADORA3	140	genome.wustl.edu	37	1	112029258	112029258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020683.6	-1	reviewed	p.K274N	0.086	141	0.7%	78	43.6%	-	-	possibly_damaging(0.901)	deleterious(0.02)	deleterious(0.740)	HMMPfam_7tm_1
KCND3	3752	genome.wustl.edu	37	1	112319680	112319680	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004980.3	-1	reviewed	p.I578	1.000	262	0%	161	35.4%	-	-	-	-	-	NULL
WNT2B	7482	genome.wustl.edu	37	1	113057626	113057626	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024494.2	+1	reviewed	p.R105	1.000	50	0%	59	45.8%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
WNT2B	7482	genome.wustl.edu	37	1	113058999	113058999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024494.2	+1	reviewed	p.R214Q	1.000	112	0.9%	96	35.4%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_wnt,HMMSmart_SM00097
CAPZA1	829	genome.wustl.edu	37	1	113212695	113212695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006135.2	+1	reviewed	p.K268E	1.000	78	0%	63	34.9%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
FAM19A3	284467	genome.wustl.edu	37	1	113266642	113266642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004440.1	+1	reviewed	p.S114L	0.067	42	0%	63	34.9%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
LRIG2	9860	genome.wustl.edu	37	1	113652925	113652925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014813.1	+1	provisional	p.M513I	0.026	118	0%	44	40.9%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
MAGI3	260425	genome.wustl.edu	37	1	114128048	114128048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142782.1	+1	validated	p.S198I	1.000	89	0%	22	22.7%	-	-	possibly_damaging(0.921)	deleterious(0.04)	deleterious(0.720)	HMMSmart_GuKc
PHTF1	10745	genome.wustl.edu	37	1	114243505	114243505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006608.2	-1	validated	p.A653S	1.000	142	0%	60	28.3%	-	-	benign(0.079)	tolerated(0.79)	neutral(0.006)	NULL
PHTF1	10745	genome.wustl.edu	37	1	114280875	114280875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006608.2	-1	validated	p.K63T	1.000	153	0%	73	43.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BCL2L15	440603	genome.wustl.edu	37	1	114429966	114429966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010922.2	-1	validated	p.T11M	0.990	313	0%	165	27.9%	-	-	unknown(0)	deleterious(0)	-	NULL
AP4B1	10717	genome.wustl.edu	37	1	114442634	114442634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006594.2	-1	validated	p.L336M	1.000	86	0%	74	39.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
HIPK1	204851	genome.wustl.edu	37	1	114512708	114512708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198268.1	+1	reviewed	p.V968I	0.045	135	0%	91	35.2%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
DENND2C	163259	genome.wustl.edu	37	1	115128227	115128227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198459.3	-1	validated	p.K870N	1.000	95	0%	55	32.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AMPD1	270	genome.wustl.edu	37	1	115220970	115220970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000036.2	-1	reviewed	p.S359Y	1.000	156	0%	118	34.7%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_A_deaminase,superfamily_SSF51556
AMPD1	270	genome.wustl.edu	37	1	115223080	115223080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000036.2	-1	reviewed	p.K189N	1.000	106	0%	80	43.8%	-	-	benign(0.286)	tolerated(0.38)	neutral(0.105)	NULL
NRAS	4893	genome.wustl.edu	37	1	115256486	115256486	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002524.3	-1	reviewed	p.G75	1.000	132	0%	124	32.3%	-	-	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDE1	7812	genome.wustl.edu	37	1	115261332	115261332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130523.1	-1	validated	p.D766Y	1.000	72	0%	66	31.8%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CSDE1	7812	genome.wustl.edu	37	1	115273209	115273209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130523.1	-1	validated	p.R386C	1.000	246	0%	110	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
CSDE1	7812	genome.wustl.edu	37	1	115280616	115280616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130523.1	-1	validated	p.E139*	1.000	418	0%	134	35.8%	-	-	-	-	-	NULL
SYCP1	6847	genome.wustl.edu	37	1	115419396	115419396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003176.2	+1	validated	p.E256*	0.997	75	0%	34	20.6%	-	-	-	-	-	HMMPfam_SCP-1
SYCP1	6847	genome.wustl.edu	37	1	115420763	115420763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003176.2	+1	validated	p.D284Y	1.000	69	0%	44	38.6%	-	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	HMMPfam_SCP-1
SYCP1	6847	genome.wustl.edu	37	1	115428750	115428750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003176.2	+1	validated	p.T337N	1.000	100	0%	65	49.2%	-	-	benign(0.395)	tolerated(0.41)	neutral(0.142)	HMMPfam_SCP-1
SYCP1	6847	genome.wustl.edu	37	1	115428861	115428861	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003176.2	+1	validated	p.S374*	0.993	116	0%	61	34.4%	-	-	-	-	-	HMMPfam_SCP-1
TSPAN2	10100	genome.wustl.edu	37	1	115593139	115593139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005725.4	-1	reviewed	p.A213V	0.939	161	0%	40	40%	-	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_Tetraspannin
ATP1A1	476	genome.wustl.edu	37	1	116946553	116946553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000701.7	+1	reviewed	p.V1000A	1.000	235	0%	129	35.7%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
CD101	9398	genome.wustl.edu	37	1	117552495	117552495	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004258.3	+1	validated	p.E23*	0.981	45	0%	18	22.2%	-	-	-	-	-	HMMPfam_V-set
CD101	9398	genome.wustl.edu	37	1	117552734	117552734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004258.3	+1	validated	p.N102	0.995	72	0%	33	12.1%	-	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CD101	9398	genome.wustl.edu	37	1	117556087	117556087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004258.3	+1	validated	p.E301K	0.539	126	0%	49	36.7%	-	-	possibly_damaging(0.767)	tolerated(0.09)	deleterious(0.581)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
MAN1A2	10905	genome.wustl.edu	37	1	118003121	118003121	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006699.3	+1	validated	p.R321*	0.990	140	0%	59	39%	-	-	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
FAM46C	54855	genome.wustl.edu	37	1	118166015	118166015	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017709.3	+1	validated	p.R175	0.015	167	0.6%	83	38.6%	-	-	-	-	-	HMMPfam_DUF1693
SPAG17	200162	genome.wustl.edu	37	1	118530745	118530745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206996.2	-1	validated	p.F1868L	0.010	102	0%	44	45.5%	-	-	possibly_damaging(0.797)	tolerated(0.49)	neutral(0.310)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118644466	118644466	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206996.2	-1	validated	p.P177	0.057	388	0.5%	129	34.1%	-	-	-	-	-	NULL
HAO2	51179	genome.wustl.edu	37	1	119925635	119925635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005783.1	+1	reviewed	p.P77S	0.999	76	0%	21	38.1%	-	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
HSD3B1	3283	genome.wustl.edu	37	1	120050108	120050108	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000862.2	+1	validated	p.G3	0.040	227	0%	75	14.7%	-	-	-	-	-	superfamily_NAD(P)-bd
HSD3B1	3283	genome.wustl.edu	37	1	120056928	120056928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000862.2	+1	validated	p.P261L	1.000	106	0%	47	46.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
PHGDH	26227	genome.wustl.edu	37	1	120286531	120286531	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006623.3	+1	reviewed	p.V490	0.917	43	0%	49	40.8%	-	-	-	-	-	NULL
NBPF7	343505	genome.wustl.edu	37	1	120386977	120386977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001047980.1	-1	predicted	p.K61T	0.003	214	0%	117	32.5%	-	-	-	-	-	NULL
ADAM30	11085	genome.wustl.edu	37	1	120437439	120437439	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021794.2	-1	reviewed	p.C507	0.453	66	0%	63	39.7%	-	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
NOTCH2	4853	genome.wustl.edu	37	1	120462160	120462160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024408.2	-1	reviewed	p.E1852D	0.965	47	0%	36	36.1%	-	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
NOTCH2	4853	genome.wustl.edu	37	1	120468193	120468193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024408.2	-1	reviewed	p.A1416S	0.001	30	0%	28	35.7%	-	-	benign(0.028)	tolerated(0.45)	neutral(0.013)	superfamily_SSF57196
NOTCH2	4853	genome.wustl.edu	37	1	120496205	120496205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024408.2	-1	reviewed	p.V776M	1.000	168	0%	62	14.5%	-	-	possibly_damaging(0.7)	tolerated(0.2)	neutral(0.300)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
NOTCH2	4853	genome.wustl.edu	37	1	120512258	120512258	+	Silent	SNP	G	G	A	rs187598092	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024408.2	-1	reviewed	p.N328	0.233	92	0%	29	20.7%	-	-	-	-	-	HMMSmart_EGF_CA,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
LOC653513	653513	genome.wustl.edu	37	1	144677019	144677019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_927826.4	-1	model	p.R86W	0.570	81	1.2%	32	21.9%	-	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144857634	144857634	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014644.4	-1	validated	p.T2140	0.000	276	0%	122	21.3%	-	-	unknown(0)	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144903114	144903114	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014644.4	-1	validated	p.E926	1.000	104	0%	30	30%	-	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144915476	144915476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014644.4	-1	validated	p.Q650P	0.998	310	0%	126	17.5%	-	-	probably_damaging(0.992)	tolerated(0.23)	deleterious(0.489)	NULL
BCL9	607	genome.wustl.edu	37	1	147091339	147091339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004326.2	+1	reviewed	p.D460N	0.998	10	0%	28	39.3%	-	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
SV2A	9900	genome.wustl.edu	37	1	149882414	149882414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014849.3	-1	validated	p.A307T	1.000	48	0%	63	31.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SF3B4	10262	genome.wustl.edu	37	1	149895613	149895613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005850.3	-1	reviewed	p.G366C	1.000	31	0%	53	30.2%	-	-	unknown(0)	tolerated(0.11)	-	NULL
SF3B4	10262	genome.wustl.edu	37	1	149895745	149895745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005850.3	-1	reviewed	p.G359R	1.000	30	0%	51	41.2%	-	-	unknown(0)	deleterious(0.01)	-	NULL
OTUD7B	56957	genome.wustl.edu	37	1	149916175	149916175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020205.2	-1	validated	p.G705R	0.052	37	0%	37	27%	-	-	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	NULL
VPS45	11311	genome.wustl.edu	37	1	150049783	150049783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007259.3	+1	reviewed	p.R205C	1.000	197	0%	90	34.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
VPS45	11311	genome.wustl.edu	37	1	150064489	150064489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007259.3	+1	reviewed	p.L453I	1.000	137	0%	62	32.3%	-	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
RPRD2	23248	genome.wustl.edu	37	1	150413407	150413407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015203.3	+1	validated	p.S115Y	1.000	88	0%	53	11.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain
RPRD2	23248	genome.wustl.edu	37	1	150444675	150444675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015203.3	+1	validated	p.P1084H	0.999	49	0%	49	28.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TARS2	80222	genome.wustl.edu	37	1	150461641	150461641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000369053	+1	known	p.F155L	0.395	40	0%	29	37.9%	-	-	unknown(0)	-	-	NULL
ECM1	1893	genome.wustl.edu	37	1	150483519	150483519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004425.3	+1	reviewed	p.R185C	0.313	36	0%	64	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ECM1
SETDB1	9869	genome.wustl.edu	37	1	150900246	150900246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145415.1	+1	reviewed	p.S19F	1.000	150	0%	104	32.7%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
SETDB1	9869	genome.wustl.edu	37	1	150921914	150921914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145415.1	+1	reviewed	p.S498Y	1.000	102	0%	85	43.5%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
SETDB1	9869	genome.wustl.edu	37	1	150936084	150936084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145415.1	+1	reviewed	p.S1179L	1.000	39	0%	49	30.6%	-	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ANXA9	8416	genome.wustl.edu	37	1	150957075	150957075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003568.2	+1	validated	p.A132V	0.779	82	0%	102	32.4%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Annexin,HMMPfam_Annexin,HMMSmart_ANX
FAM63A	55793	genome.wustl.edu	37	1	150970249	150970249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018379.4	-1	validated	p.L394M	1.000	29	0%	23	30.4%	-	-	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
FAM63A	55793	genome.wustl.edu	37	1	150971864	150971864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018379.4	-1	validated	p.S321I	1.000	86	0%	112	33.9%	-	-	possibly_damaging(0.76)	deleterious(0.04)	deleterious(0.630)	NULL
FAM63A	55793	genome.wustl.edu	37	1	150975079	150975079	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018379.4	-1	validated	p.Q5	0.009	46	0%	76	38.2%	-	-	-	-	-	NULL
BNIPL	149428	genome.wustl.edu	37	1	151011435	151011435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138278.3	+1	validated	p.E122D	0.000	110	0%	140	40%	-	-	possibly_damaging(0.558)	tolerated(0.61)	neutral(0.195)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151070452	151070452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144618.2	+1	validated	p.S199Y	1.000	104	0%	71	39.4%	-	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151076148	151076148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144618.2	+1	validated	p.T245A	1.000	98	0%	75	37.3%	-	-	benign(0.021)	tolerated(0.34)	neutral(0.024)	NULL
VPS72	6944	genome.wustl.edu	37	1	151156966	151156966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005997.1	-1	provisional	p.R130Q	1.000	54	0%	69	40.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_YL1
CGN	57530	genome.wustl.edu	37	1	151508090	151508090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020770.2	+1	validated	p.R1003S	0.774	94	0%	107	30.8%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Myosin_tail_1
SNX27	81609	genome.wustl.edu	37	1	151611496	151611496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030918.5	+1	reviewed	p.D148E	1.000	73	0%	58	43.1%	-	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	superfamily_PDZ,superfamily_PX
RORC	6097	genome.wustl.edu	37	1	151785743	151785743	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005060.3	-1	reviewed	p.Y382	1.000	125	0%	183	40.4%	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RORC	6097	genome.wustl.edu	37	1	151787505	151787505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005060.3	-1	reviewed	p.R232H	0.047	39	0%	92	10.9%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
TCHH	7062	genome.wustl.edu	37	1	152080302	152080302	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007113.2	-1	provisional	p.F1797	0.072	210	0%	307	29%	-	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152280711	152280711	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002016.1	-1	reviewed	p.A2217	0.000	368	0%	296	35.5%	-	-	-	-	-	HMMPfam_Filaggrin
FLG	2312	genome.wustl.edu	37	1	152281402	152281402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002016.1	-1	reviewed	p.R1987H	0.000	324	0%	194	43.8%	-	-	unknown(0)	tolerated(0.24)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152326460	152326460	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014342.2	-1	provisional	p.R1268*	0.000	645	0%	197	38.1%	-	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152327997	152327997	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014342.2	-1	provisional	p.S755	0.001	446	0%	127	29.1%	-	-	-	-	-	NULL
LCE3D	84648	genome.wustl.edu	37	1	152552229	152552229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032563.1	-1	validated	p.R62*	0.106	81	0%	124	40.3%	-	-	-	-	-	NULL
LCE2B	26239	genome.wustl.edu	37	1	152659587	152659587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014357.4	+1	reviewed	p.D90N	0.003	44	0%	76	36.8%	-	-	unknown(0)	-	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732525	152732525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025231.1	+1	provisional	p.V154A	0.001	110	0%	128	37.5%	-	-	possibly_damaging(0.941)	deleterious(0.04)	deleterious(0.736)	NULL
LCE1E	353135	genome.wustl.edu	37	1	152759928	152759928	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178353.1	+1	validated	p.C51	1.000	137	0%	159	15.1%	-	-	-	-	-	NULL
LCE1B	353132	genome.wustl.edu	37	1	152784999	152784999	+	Missense_Mutation	SNP	C	C	A	rs41268508	byCluster;byFrequency	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178349.1	+1	validated	p.T26N	0.043	262	0%	263	35.7%	-	-	unknown(0)	-	-	NULL
PGLYRP4	57115	genome.wustl.edu	37	1	153315685	153315685	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020393.2	-1	validated	e4-1	1.000	196	0%	104	10.6%	-	-	-	-	-	-
S100A9	6280	genome.wustl.edu	37	1	153333263	153333263	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002965.3	+1	reviewed	p.D98	0.000	18	0%	18	44.4%	-	-	-	-	-	NULL
S100A7	6278	genome.wustl.edu	37	1	153430384	153430384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002963.3	-1	reviewed	p.K68N	0.082	136	0%	113	34.5%	-	-	benign(0.068)	tolerated(0.42)	neutral(0.018)	PatternScan_S100_CABP,PatternScan_EF_HAND_1,superfamily_SSF47473
S100A5	6276	genome.wustl.edu	37	1	153509894	153509894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002962.1	-1	reviewed	p.D71N	0.957	159	0%	208	37.5%	-	-	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	superfamily_SSF47473
CHTOP	26097	genome.wustl.edu	37	1	153615741	153615741	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015607.2	+1	provisional	p.R148*	1.000	150	0%	146	38.4%	-	-	-	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153736664	153736664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023015.3	+1	validated	p.R631Q	0.999	115	0%	94	43.6%	-	-	possibly_damaging(0.887)	tolerated(0.61)	neutral(0.351)	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153749112	153749112	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000458027	+1	known	p.P14Q	0.000	44	0%	116	34.5%	-	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
NUP210L	91181	genome.wustl.edu	37	1	154091231	154091231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207308.2	-1	validated	p.K460N	1.000	244	0%	151	38.4%	-	-	probably_damaging(0.996)	tolerated(0.47)	deleterious(0.473)	superfamily_Invasin_intimin
NUP210L	91181	genome.wustl.edu	37	1	154099823	154099823	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207308.2	-1	validated	p.V383	0.972	97	0%	127	30.7%	-	-	-	-	-	NULL
NUP210L	91181	genome.wustl.edu	37	1	154108305	154108305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207308.2	-1	validated	p.V332I	1.000	114	0%	148	37.2%	-	-	benign(0.004)	tolerated(0.48)	neutral(0.011)	NULL
HAX1	10456	genome.wustl.edu	37	1	154246344	154246344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453365	+1	known	p.S116N	1.000	47	0%	40	30%	-	-	benign(0.359)	deleterious(0)	deleterious(0.558)	NULL
ATP8B2	57198	genome.wustl.edu	37	1	154315762	154315762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020452.3	+1	reviewed	p.R576W	1.000	40	0%	48	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ADAR	103	genome.wustl.edu	37	1	154574058	154574058	+	Missense_Mutation	SNP	G	G	A	rs186852211	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001111.3	-1	reviewed	p.H354Y	0.959	205	0%	158	36.1%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_""Winged helix"" DNA-binding domain"
KCNN3	3782	genome.wustl.edu	37	1	154841532	154841532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002249.4	-1	reviewed	p.E303D	1.000	246	0%	321	11.2%	-	-	possibly_damaging(0.948)	deleterious(0.05)	deleterious(0.736)	HMMPfam_SK_channel
PMVK	10654	genome.wustl.edu	37	1	154901596	154901596	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006556.3	-1	validated	p.F72	0.005	70	0%	91	30.8%	-	-	-	-	-	HMMPfam_P-mevalo_kinase,superfamily_P-loop containing nucleoside triphosphate hydrolases
FLAD1	80308	genome.wustl.edu	37	1	154960986	154960986	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025207.4	+1	reviewed	p.L260	1.000	36	0%	67	35.8%	-	-	-	-	-	superfamily_Molybdenum cofactor biosynthesis proteins
FAM189B	10712	genome.wustl.edu	37	1	155221537	155221537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006589.2	-1	validated	p.T261A	1.000	28	0%	54	24.1%	-	-	probably_damaging(0.971)	tolerated(0.14)	deleterious(0.662)	NULL
CLK2	1196	genome.wustl.edu	37	1	155233149	155233149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003993.2	-1	reviewed	p.D453N	1.000	67	0%	111	18%	-	-	benign(0.205)	tolerated(0.13)	neutral(0.273)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FDPS	2224	genome.wustl.edu	37	1	155287988	155287988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135821.1	+1	reviewed	p.D197G	0.994	120	0%	171	32.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth
FDPS	2224	genome.wustl.edu	37	1	155288489	155288489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135821.1	+1	reviewed	p.D240Y	1.000	93	0%	158	44.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth
ASH1L	55870	genome.wustl.edu	37	1	155313186	155313186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018489.2	-1	reviewed	p.R2738W	1.000	222	0%	91	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAH,HMMSmart_SM00439
ASH1L	55870	genome.wustl.edu	37	1	155449016	155449016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018489.2	-1	reviewed	p.E1215D	1.000	216	0%	65	33.8%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
KIAA0907	22889	genome.wustl.edu	37	1	155887342	155887342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014949.2	-1	predicted	p.R463Q	1.000	34	0%	32	43.8%	-	-	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	NULL
UBQLN4	56893	genome.wustl.edu	37	1	156011743	156011743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000368307	-1	known	p.S115P	0.865	21	0%	26	46.2%	-	-	unknown(0)	tolerated(0.08)	-	NULL
UBQLN4	56893	genome.wustl.edu	37	1	156012661	156012661	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020131.3	-1	provisional	p.I390	1.000	180	0%	249	36.9%	-	-	-	-	-	NULL
UBQLN4	56893	genome.wustl.edu	37	1	156020177	156020177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020131.3	-1	provisional	p.R216C	1.000	135	0%	187	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_STI1
SLC25A44	9673	genome.wustl.edu	37	1	156169763	156169763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014655.2	+1	validated	p.R42H	1.000	172	0%	168	42.3%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PAQR6	79957	genome.wustl.edu	37	1	156216513	156216513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198406.1	-1	provisional	p.L4I	0.999	123	0%	167	37.7%	-	-	benign(0.025)	tolerated(0.18)	neutral(0.057)	NULL
BCAN	63827	genome.wustl.edu	37	1	156628429	156628429	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021948.3	+1	validated	p.C844	1.000	22	0%	30	30%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ENSG00000250495	0	genome.wustl.edu	37	1	156638687	156638687	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000515307	+1	novel	NULL	0.000	7	0.000	14	0.500	-	-	-	-	-	-
NES	10763	genome.wustl.edu	37	1	156639593	156639593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006617.1	-1	reviewed	p.V1463M	0.000	21	0%	39	30.8%	-	-	benign(0.026)	deleterious(0)	neutral(0.446)	NULL
NES	10763	genome.wustl.edu	37	1	156646347	156646347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006617.1	-1	reviewed	p.E237G	0.932	15	0%	32	34.4%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Filament
PRCC	5546	genome.wustl.edu	37	1	156737611	156737611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005973.4	+1	reviewed	p.E16D	1.000	6	0.000	19	0.368	-	-	unknown(0)	tolerated(0.49)	-	NULL
INSRR	3645	genome.wustl.edu	37	1	156810781	156810781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014215.1	-1	validated	p.Y1260D	1.000	38	0%	83	36.1%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Kinase_like
INSRR	3645	genome.wustl.edu	37	1	156810788	156810788	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014215.1	-1	validated	p.L1257	0.004	44	0%	83	41%	-	-	-	-	-	superfamily_Kinase_like
INSRR	3645	genome.wustl.edu	37	1	156823859	156823859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014215.1	-1	validated	p.R108C	0.944	36	2.8%	90	51.1%	-	-	benign(0.353)	deleterious(0.05)	neutral(0.457)	HMMPfam_Recep_L_domain,superfamily_SSF52058
NTRK1	4914	genome.wustl.edu	37	1	156851255	156851255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002529.3	+1	reviewed	p.D738N	1.000	9	0.000	9	0.556	-	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PEAR1	375033	genome.wustl.edu	37	1	156883041	156883041	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080471.1	+1	provisional	p.S826	0.944	133	0%	262	37.8%	-	-	-	-	-	superfamily_Grow_fac_recept
LRRC71	149499	genome.wustl.edu	37	1	156894453	156894453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144702.2	+1	validated	p.R153Q	0.616	50	0%	107	29.9%	-	-	possibly_damaging(0.886)	tolerated(0.2)	neutral(0.395)	superfamily_RNI-like
ARHGEF11	9826	genome.wustl.edu	37	1	156908226	156908226	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198236.1	-1	reviewed	p.G1392	1.000	66	0%	84	35.7%	-	-	-	-	-	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156914170	156914170	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198236.1	-1	reviewed	p.I1016S	1.000	111	0%	110	10.9%	-	-	benign(0.36)	deleterious(0)	deleterious(0.559)	HMMSmart_PH,superfamily_SSF50729
ARHGEF11	9826	genome.wustl.edu	37	1	156931470	156931470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198236.1	-1	reviewed	p.A413V	1.000	99	0%	58	43.1%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_RGS,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
ETV3	2117	genome.wustl.edu	37	1	157094757	157094757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145312.1	-1	validated	p.P472L	1.000	58	0%	48	35.4%	-	-	benign(0.151)	tolerated(1)	neutral(0.013)	NULL
FCRL3	115352	genome.wustl.edu	37	1	157666950	157666950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052939.3	-1	reviewed	p.R275K	0.000	128	0%	43	37.2%	-	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00409,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158047814	158047814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018240.5	+1	validated	p.D79G	0.999	88	0%	154	42.2%	-	-	benign(0.341)	tolerated(0.22)	neutral(0.149)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158057619	158057619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018240.5	+1	validated	p.A246T	1.000	55	0%	71	33.8%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158059381	158059381	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018240.5	+1	validated	p.I378	0.991	65	0%	108	38.9%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CD1C	911	genome.wustl.edu	37	1	158262629	158262629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001765.2	+1	reviewed	p.S285N	0.428	125	0%	69	42%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
OR6P1	128366	genome.wustl.edu	37	1	158532571	158532571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000334632	-1	known	p.S275F	0.112	141	0%	69	37.7%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	HMMPfam_7tm_1,superfamily_SSF81321
OR6P1	128366	genome.wustl.edu	37	1	158533204	158533204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000334632	-1	known	p.G64V	0.005	74	0%	36	13.9%	-	-	benign(0.43)	tolerated(0.07)	neutral(0.459)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158582697	158582697	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003126.2	-1	reviewed	p.S2348	0.930	112	0%	24	50%	-	-	-	-	-	superfamily_EF-hand
SPTA1	6708	genome.wustl.edu	37	1	158614107	158614107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003126.2	-1	reviewed	p.S1425F	0.989	125	0%	47	31.9%	-	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K6	128371	genome.wustl.edu	37	1	158725325	158725325	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005184.1	+1	provisional	p.V240	0.845	266	0%	138	40.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6K6	128371	genome.wustl.edu	37	1	158725591	158725591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005184.1	+1	provisional	p.G329V	0.000	184	0%	93	34.4%	-	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	superfamily_Family A G protein-coupled receptor-like
FCER1A	2205	genome.wustl.edu	37	1	159273776	159273776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002001.2	+1	reviewed	p.E45D	0.006	97	0%	21	23.8%	-	-	benign(0.008)	tolerated(1)	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
OR10J3	441911	genome.wustl.edu	37	1	159283876	159283876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004467.1	-1	provisional	p.D192Y	0.001	179	0%	51	41.2%	-	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_7tm_1,superfamily_SSF81321
OR10J1	26476	genome.wustl.edu	37	1	159410066	159410066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012351.2	+1	validated	p.S173F	0.001	221	0%	95	45.3%	-	-	probably_damaging(0.971)	tolerated(0.79)	neutral(0.414)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C1orf204	284677	genome.wustl.edu	37	1	159807777	159807777	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134233.1	-1	predicted	p.V213	0.012	451	0%	316	30.4%	-	-	-	-	-	NULL
IGSF9	57549	genome.wustl.edu	37	1	159900186	159900186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135050.1	-1	validated	p.E619D	0.617	34	0%	75	38.7%	-	-	probably_damaging(0.963)	tolerated(0.12)	deleterious(0.666)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159912789	159912789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135050.1	-1	validated	p.G71S	0.996	59	0%	110	35.5%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
KCNJ10	3766	genome.wustl.edu	37	1	160011973	160011973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002241.3	-1	reviewed	p.G117E	0.446	134	0%	72	38.9%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
KCNJ9	3765	genome.wustl.edu	37	1	160054399	160054399	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004983.2	+1	reviewed	p.G193	0.981	10	0%	22	59.1%	-	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
ATP1A2	477	genome.wustl.edu	37	1	160093201	160093201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000702.3	+1	reviewed	p.D126N	1.000	47	0%	64	32.8%	-	-	possibly_damaging(0.516)	deleterious(0.04)	deleterious(0.522)	superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160099935	160099935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000702.3	+1	reviewed	p.L502P	1.000	29	0%	37	35.1%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160147417	160147417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144699.3	+1	reviewed	p.Y900C	0.000	187	0%	151	25.8%	-	-	benign(0.051)	tolerated(0.17)	neutral(0.062)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
PEA15	8682	genome.wustl.edu	37	1	160183220	160183220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003768.3	+1	validated	p.R113W	1.000	56	0%	73	34.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DEATH domain
COPA	1314	genome.wustl.edu	37	1	160259952	160259952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098398.1	-1	reviewed	p.R1233C	1.000	123	0%	78	35.9%	-	-	possibly_damaging(0.738)	deleterious(0)	deleterious(0.715)	HMMPfam_COPI_C
COPA	1314	genome.wustl.edu	37	1	160281662	160281662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098398.1	-1	reviewed	p.R358W	1.000	110	0%	87	31%	-	-	possibly_damaging(0.722)	deleterious(0.03)	deleterious(0.627)	HMMPfam_Coatomer_WDAD
NCSTN	23385	genome.wustl.edu	37	1	160326986	160326986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015331.2	+1	reviewed	p.E650D	1.000	102	0%	53	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VANGL2	57216	genome.wustl.edu	37	1	160385637	160385637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020335.1	+1	validated	p.E4K	1.000	12	0%	31	41.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
VANGL2	57216	genome.wustl.edu	37	1	160389222	160389222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020335.1	+1	validated	p.R208Q	0.995	87	0%	134	29.1%	-	-	benign(0.054)	tolerated(0.66)	neutral(0.006)	HMMPfam_Strabismus
CD84	8832	genome.wustl.edu	37	1	160523894	160523894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003874.3	-1	validated	p.S144Y	0.000	109	0%	55	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
LY9	4063	genome.wustl.edu	37	1	160783545	160783545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002348.2	+1	validated	p.T192A	0.785	105	0%	64	10.9%	-	-	probably_damaging(0.996)	tolerated(0.26)	deleterious(0.496)	superfamily_Immunoglobulin
F11R	50848	genome.wustl.edu	37	1	160969677	160969677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016946.4	-1	reviewed	p.R228H	0.054	74	0%	48	35.4%	-	-	benign(0.07)	tolerated(0.28)	neutral(0.036)	HMMSmart_SM00409,superfamily_Immunoglobulin
ARHGAP30	257106	genome.wustl.edu	37	1	161021140	161021140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025598.1	-1	validated	p.P462T	0.860	40	0%	58	31%	-	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161023162	161023162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025598.1	-1	validated	p.E184K	1.000	74	0%	88	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
UFC1	51506	genome.wustl.edu	37	1	161126806	161126806	+	Missense_Mutation	SNP	C	C	T	rs191173120	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016406.3	+1	validated	p.R64W	1.000	118	0.8%	137	38.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_UFC1
USP21	27005	genome.wustl.edu	37	1	161130578	161130578	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014443.2	+1	reviewed	p.R50*	0.998	35	0%	62	38.7%	-	-	-	-	-	NULL
ADAMTS4	9507	genome.wustl.edu	37	1	161163154	161163154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005099.4	-1	reviewed	p.C587Y	1.000	25	0%	64	35.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS4	9507	genome.wustl.edu	37	1	161165328	161165328	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005099.4	-1	reviewed	p.A396	0.920	95	0%	121	40.5%	-	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
HSPA6	3310	genome.wustl.edu	37	1	161495056	161495056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002155.3	+1	validated	p.G203D	1.000	59	0%	119	27.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HSP70,PatternScan_HSP70_2,superfamily_Actin-like ATPase domain
HSPA6	3310	genome.wustl.edu	37	1	161495313	161495313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002155.3	+1	validated	p.L289	1.000	32	0%	45	35.6%	-	-	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
UHMK1	127933	genome.wustl.edu	37	1	162469759	162469759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175866.4	+1	reviewed	p.V95M	1.000	243	0%	233	37.3%	-	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DDR2	4921	genome.wustl.edu	37	1	162722987	162722987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014796.1	+1	reviewed	p.R62M	1.000	107	0%	38	39.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
DDR2	4921	genome.wustl.edu	37	1	162745623	162745623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014796.1	+1	reviewed	p.R680C	0.614	97	0%	35	14.3%	-	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
HSD17B7	51478	genome.wustl.edu	37	1	162773314	162773314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016371.2	+1	validated	p.A246T	0.000	190	0%	43	37.2%	-	-	benign(0.012)	tolerated(0.21)	neutral(0.044)	superfamily_NAD(P)-binding Rossmann-fold domains
LRRC52	440699	genome.wustl.edu	37	1	165513762	165513762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005214.3	+1	validated	p.S77G	1.000	103	0%	35	17.1%	-	-	possibly_damaging(0.949)	tolerated(0.3)	neutral(0.422)	superfamily_SSF52058
UCK2	7371	genome.wustl.edu	37	1	165860501	165860501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012474.3	+1	reviewed	p.E100*	1.000	121	0%	65	32.3%	-	-	-	-	-	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
POGK	57645	genome.wustl.edu	37	1	166816793	166816793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017542.3	+1	reviewed	p.S108A	0.001	104	0%	77	27.3%	-	-	benign(0.047)	tolerated(0.14)	neutral(0.253)	NULL
POGK	57645	genome.wustl.edu	37	1	166818519	166818519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017542.3	+1	reviewed	p.R235C	1.000	33	0%	28	32.1%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_BrkDBD
DUSP27	92235	genome.wustl.edu	37	1	167095563	167095563	+	Nonsense_Mutation	SNP	C	C	T	rs181149914	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.R399*	1.000	49	0%	64	34.4%	-	-	-	-	-	NULL
DUSP27	92235	genome.wustl.edu	37	1	167095659	167095659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.R431W	0.003	19	0%	35	17.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167095818	167095818	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.L484	1.000	42	0%	57	36.8%	-	-	-	-	-	NULL
DUSP27	92235	genome.wustl.edu	37	1	167095913	167095913	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.V515	0.010	53	0%	64	34.4%	-	-	-	-	-	NULL
DUSP27	92235	genome.wustl.edu	37	1	167096540	167096540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.Q724H	1.000	54	0%	52	40.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167096672	167096672	+	Silent	SNP	C	C	A	rs145856876	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.V768	0.002	31	0%	37	43.2%	-	-	-	-	-	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097543	167097543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080426.1	+1	provisional	p.R1059C	0.084	72	0%	54	46.3%	-	-	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	NULL
CD247	919	genome.wustl.edu	37	1	167407838	167407838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198053.2	-1	reviewed	p.R90H	0.115	94	0%	137	35.8%	-	-	possibly_damaging(0.938)	tolerated(0.12)	deleterious(0.644)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167779986	167779986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018417.4	-1	reviewed	p.E1549D	0.998	38	0%	43	34.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_TPR-like
ADCY10	55811	genome.wustl.edu	37	1	167847760	167847760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018417.4	-1	reviewed	p.E444*	1.000	141	0%	62	37.1%	-	-	-	-	-	superfamily_Adenylyl and guanylyl cyclase catalytic domain
TBX19	9095	genome.wustl.edu	37	1	168262395	168262395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005149.2	+1	reviewed	p.S161Y	1.000	170	0%	133	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
DPT	1805	genome.wustl.edu	37	1	168698325	168698325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001937.3	-1	reviewed	p.Y30H	1.000	74	0%	29	44.8%	-	-	unknown(0)	tolerated(0.1)	-	NULL
C1orf114	57821	genome.wustl.edu	37	1	169390741	169390741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021179.1	-1	predicted	p.R310*	0.000	247	0%	102	34.3%	-	-	-	-	-	NULL
F5	2153	genome.wustl.edu	37	1	169487651	169487651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000130.4	-1	reviewed	p.K2115R	0.991	186	0%	36	25%	-	-	possibly_damaging(0.858)	tolerated(0.06)	deleterious(0.653)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
F5	2153	genome.wustl.edu	37	1	169495212	169495212	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000130.4	-1	reviewed	p.W1881*	0.998	132	0%	36	19.4%	-	-	-	-	-	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169511938	169511938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000130.4	-1	reviewed	p.A797V	0.004	315	0%	107	33.6%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
F5	2153	genome.wustl.edu	37	1	169525964	169525964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000130.4	-1	reviewed	p.A291D	0.756	189	0%	79	35.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169582825	169582825	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000446728	-1	known	p.R196C	0.835	117	0%	27	40.7%	-	-	-	-	-	superfamily_EGF/Laminin
METTL18	92342	genome.wustl.edu	37	1	169761885	169761885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033418.1	-1	provisional	p.R318C	0.245	71	0%	60	38.3%	-	-	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
C1orf112	55732	genome.wustl.edu	37	1	169822105	169822105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018186.2	+1	predicted	p.R847C	0.001	60	1.7%	29	37.9%	-	-	benign(0.009)	tolerated(0.05)	neutral(0.346)	NULL
KIFAP3	22920	genome.wustl.edu	37	1	169947245	169947245	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014970.2	-1	reviewed	p.D626	1.000	249	0%	52	13.5%	-	-	-	-	-	HMMPfam_KAP,superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	169951148	169951148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014970.2	-1	reviewed	p.S588F	1.000	173	0%	29	34.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	170015872	170015872	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014970.2	-1	reviewed	p.R100	0.496	136	0%	40	27.5%	-	-	-	-	-	HMMPfam_KAP
FMO3	2328	genome.wustl.edu	37	1	171077277	171077277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002294.2	+1	reviewed	p.V181A	0.000	209	0%	36	33.3%	-	-	benign(0)	tolerated(0.88)	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
FMO3	2328	genome.wustl.edu	37	1	171083275	171083275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002294.2	+1	reviewed	p.F319S	0.831	191	0%	47	36.2%	-	-	benign(0.291)	tolerated(0.05)	neutral(0.435)	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
FMO3	2328	genome.wustl.edu	37	1	171085413	171085413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002294.2	+1	reviewed	p.R417C	0.000	197	0%	53	17%	-	-	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_FMO-like
FMO3	2328	genome.wustl.edu	37	1	171086487	171086487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002294.2	+1	reviewed	p.V502I	0.013	171	0%	56	32.1%	-	-	benign(0.084)	tolerated(0.18)	neutral(0.062)	HMMPfam_FMO-like
FMO4	2329	genome.wustl.edu	37	1	171300912	171300912	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002022.1	+1	reviewed	p.T206	0.000	156	0%	52	32.7%	-	-	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171496939	171496939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015172.3	+1	validated	p.T402P	0.988	235	0%	135	13.3%	-	-	unknown(0)	-	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171526671	171526671	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451306	+1	known	e19-1	0.002	231	0%	147	32%	-	-	-	-	-	-
PRRC2C	23215	genome.wustl.edu	37	1	171556272	171556272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015172.3	+1	validated	p.S2625N	1.000	140	0%	47	29.8%	-	-	possibly_damaging(0.495)	-	-	NULL
MIR199A2	406977	genome.wustl.edu	37	1	172113720	172113720	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000385289	-1	known	NULL	1.000	71	0%	29	51.7%	-	-	-	-	-	-
C1orf105	92346	genome.wustl.edu	37	1	172417599	172417599	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139240.3	+1	validated	p.A42	0.000	374	0.5%	255	31%	-	-	-	-	-	NULL
C1orf9	51430	genome.wustl.edu	37	1	172579351	172579351	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014283.3	+1	validated	p.E1239	0.959	92	0%	21	33.3%	-	-	-	-	-	NULL
FASLG	356	genome.wustl.edu	37	1	172629268	172629268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000639.1	+1	reviewed	p.E128K	0.978	94	0%	115	47%	-	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
PRDX6	9588	genome.wustl.edu	37	1	173455474	173455474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004905.2	+1	reviewed	p.I160M	0.993	142	0%	92	32.6%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	superfamily_Thioredoxin-like,HMMPfam_1-cysPrx_C
SLC9A11	284525	genome.wustl.edu	37	1	173499100	173499100	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178527.3	-1	validated	p.Q753*	1.000	301	0%	94	31.9%	-	-	-	-	-	NULL
DARS2	55157	genome.wustl.edu	37	1	173819523	173819523	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018122.4	+1	reviewed	p.F417Y	0.000	101	0%	49	40.8%	-	-	benign(0.02)	tolerated(0.99)	neutral(0.001)	HMMPfam_GAD,HMMPfam_tRNA-synt_2,superfamily_SSF55261,superfamily_SSF55681
RC3H1	149041	genome.wustl.edu	37	1	173930270	173930270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172071.2	-1	validated	p.S772F	1.000	330	0%	125	32.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173953661	173953661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172071.2	-1	validated	p.L110V	1.000	122	0%	97	26.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNN	63923	genome.wustl.edu	37	1	175046823	175046823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022093.1	+1	validated	p.I90T	1.000	43	0%	60	31.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TNN	63923	genome.wustl.edu	37	1	175049509	175049509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022093.1	+1	validated	p.R332H	0.997	75	0%	93	36.6%	-	-	probably_damaging(0.998)	tolerated(0.57)	deleterious(0.480)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPPA2	60676	genome.wustl.edu	37	1	176525967	176525967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020318.2	+1	validated	p.A170V	0.001	55	0%	40	35%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
ASTN1	460	genome.wustl.edu	37	1	176833433	176833433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004319.1	-1	validated	p.S1291I	1.000	85	0%	44	45.5%	-	-	benign(0.314)	deleterious(0.03)	neutral(0.463)	NULL
FAM5B	57795	genome.wustl.edu	37	1	177247738	177247738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021165.2	+1	provisional	p.R351Q	1.000	30	0%	24	37.5%	-	-	possibly_damaging(0.867)	tolerated(0.45)	neutral(0.349)	NULL
FAM20B	9917	genome.wustl.edu	37	1	179013193	179013193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014864.3	+1	validated	p.V71M	1.000	73	0%	100	36%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAM20B	9917	genome.wustl.edu	37	1	179023681	179023681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014864.3	+1	validated	p.R161Q	1.000	107	0%	53	28.3%	-	-	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179364309	179364309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144696.4	+1	validated	p.A361S	1.000	117	0%	52	17.3%	-	-	unknown(0)	deleterious(0)	-	NULL
CEP350	9857	genome.wustl.edu	37	1	179966077	179966077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014810.4	+1	reviewed	p.T262N	0.525	204	0%	73	27.4%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
QSOX1	5768	genome.wustl.edu	37	1	180153130	180153130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002826.4	+1	reviewed	p.V278F	0.000	95	0%	135	37%	-	-	possibly_damaging(0.774)	tolerated(0.09)	deleterious(0.585)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181726120	181726120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000721.2	+1	reviewed	p.R1396H	1.000	235	0%	116	35.3%	-	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181731731	181731731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000721.2	+1	reviewed	p.N1543D	1.000	186	0%	53	41.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181750660	181750660	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000721.2	+1	reviewed	e39+1	1.000	47	0%	33	33.3%	-	-	-	-	-	-
TEDDM1	127670	genome.wustl.edu	37	1	182368887	182368887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172000.3	-1	validated	p.T245I	0.001	119	0%	66	36.4%	-	-	benign(0.314)	deleterious(0.01)	deleterious(0.504)	NULL
RNASEL	6041	genome.wustl.edu	37	1	182555078	182555078	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021133.2	-1	reviewed	p.I288	0.000	73	0%	32	34.4%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DHX9	1660	genome.wustl.edu	37	1	182836147	182836147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001357.4	+1	reviewed	p.I509S	1.000	253	0%	82	40.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_DEAH_ATP_HELICASE,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
LAMC1	3915	genome.wustl.edu	37	1	183083772	183083772	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002293.3	+1	reviewed	p.G376	0.022	80	0%	46	32.6%	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
LAMC1	3915	genome.wustl.edu	37	1	183099639	183099639	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002293.3	+1	reviewed	p.I1147	0.022	87	0%	54	29.6%	-	-	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183209508	183209508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005562.2	+1	reviewed	p.G1104S	0.002	97	0%	49	44.9%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
NCF2	4688	genome.wustl.edu	37	1	183538285	183538285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000433.3	-1	reviewed	p.E235D	1.000	268	0%	189	27.5%	-	-	possibly_damaging(0.802)	tolerated(0.18)	neutral(0.358)	superfamily_SH3
HMCN1	83872	genome.wustl.edu	37	1	185931673	185931673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031935.2	+1	reviewed	p.P618S	1.000	194	0%	64	25%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185934980	185934980	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031935.2	+1	reviewed	p.L715	0.795	325	0%	76	31.6%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186092143	186092143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031935.2	+1	reviewed	p.T4097M	0.009	76	0%	20	65%	-	-	benign(0.011)	tolerated(0.24)	neutral(0.038)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186106738	186106738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031935.2	+1	reviewed	p.G4564D	1.000	131	0%	42	19%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
HMCN1	83872	genome.wustl.edu	37	1	186134306	186134306	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031935.2	+1	reviewed	e98+1	1.000	231	0%	91	35.2%	-	-	-	-	-	-
PRG4	10216	genome.wustl.edu	37	1	186276129	186276129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005807.3	+1	reviewed	p.K426N	0.000	248	0%	415	20.2%	-	-	unknown(0)	deleterious(0.03)	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186276525	186276525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005807.3	+1	reviewed	p.K558N	0.000	356	0.3%	534	33.3%	-	-	unknown(0)	deleterious(0.02)	-	NULL
TPR	7175	genome.wustl.edu	37	1	186301393	186301393	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003292.2	-1	reviewed	p.V1846	0.878	118	0%	31	38.7%	-	-	-	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186304556	186304556	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003292.2	-1	reviewed	p.R1609*	1.000	218	0.9%	45	26.7%	-	-	-	-	-	NULL
PTGS2	5743	genome.wustl.edu	37	1	186643723	186643723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000963.2	-1	reviewed	p.C526Y	1.000	140	0%	90	13.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
FAM5C	339479	genome.wustl.edu	37	1	190423793	190423793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199051.1	-1	provisional	p.K76N	1.000	112	0%	85	30.6%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_MACPF
CFHR4	10877	genome.wustl.edu	37	1	196871563	196871563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006684.2	+1	validated	p.D25G	0.980	116	0%	42	35.7%	-	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196973933	196973933	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030787.3	+1	reviewed	p.T491	0.096	155	0%	59	37.3%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197030087	197030087	+	Missense_Mutation	SNP	C	C	A	rs17514253	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001994.2	-1	reviewed	p.K190N	0.000	206	0%	42	28.6%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ZBTB41	360023	genome.wustl.edu	37	1	197169024	197169024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194314.2	-1	validated	p.E194K	1.000	74	0%	91	38.5%	-	-	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	NULL
CRB1	23418	genome.wustl.edu	37	1	197237609	197237609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201253.1	+1	reviewed	p.K23Q	0.946	260	0%	57	47.4%	-	-	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	NULL
CRB1	23418	genome.wustl.edu	37	1	197390380	197390380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201253.1	+1	reviewed	p.G474	0.648	156	0%	52	11.5%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2
CRB1	23418	genome.wustl.edu	37	1	197396606	197396606	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201253.1	+1	reviewed	p.G717	0.405	73	0%	18	22.2%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CRB1	23418	genome.wustl.edu	37	1	197404464	197404464	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201253.1	+1	reviewed	p.I1157	0.987	106	0%	12	33.3%	-	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
CRB1	23418	genome.wustl.edu	37	1	197446890	197446890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201253.1	+1	reviewed	p.V1368I	0.000	115	0%	39	35.9%	-	-	unknown(0)	-	-	NULL
DENND1B	163486	genome.wustl.edu	37	1	197479631	197479631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142795.1	-1	validated	p.L743V	0.004	202	0.5%	45	31.1%	-	-	possibly_damaging(0.646)	tolerated(0.12)	deleterious(0.487)	NULL
PTPRC	5788	genome.wustl.edu	37	1	198665930	198665930	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002838.3	+1	reviewed	p.E62*	0.975	213	0%	89	38.2%	-	-	-	-	-	NULL
KIF14	9928	genome.wustl.edu	37	1	200569189	200569189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014875.2	-1	validated	p.K785Q	0.995	111	0%	56	39.3%	-	-	benign(0.052)	tolerated(0.14)	neutral(0.253)	NULL
KIF14	9928	genome.wustl.edu	37	1	200569559	200569559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014875.2	-1	validated	p.R742K	0.998	277	0%	94	37.2%	-	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
C1orf106	55765	genome.wustl.edu	37	1	200860702	200860702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018265.2	+1	validated	p.P12T	1.000	38	0%	64	28.1%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
C1orf106	55765	genome.wustl.edu	37	1	200870064	200870064	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018265.2	+1	validated	e5-1	1.000	6	0.000	12	0.417	-	-	-	-	-	-
C1orf106	55765	genome.wustl.edu	37	1	200878431	200878431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018265.2	+1	validated	p.P374S	0.339	14	0%	13	61.5%	-	-	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
C1orf106	55765	genome.wustl.edu	37	1	200880759	200880759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018265.2	+1	validated	p.S465A	0.998	18	0%	60	46.7%	-	-	benign(0.396)	deleterious(0)	deleterious(0.572)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200972875	200972875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017596.2	-1	provisional	p.D351Y	1.000	169	0%	285	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
LAD1	3898	genome.wustl.edu	37	1	201352338	201352338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005558.3	-1	reviewed	p.R417I	0.981	39	0%	61	31.1%	-	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
PHLDA3	23612	genome.wustl.edu	37	1	201437663	201437663	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012396.3	-1	validated	p.D84	1.000	22	0%	39	43.6%	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
NAV1	89796	genome.wustl.edu	37	1	201682025	201682025	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020443.4	+1	reviewed	p.R280*	0.994	38	0%	38	31.6%	-	-	-	-	-	NULL
LGR6	59352	genome.wustl.edu	37	1	202266689	202266689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017403.1	+1	reviewed	p.G257D	1.000	62	0%	57	42.1%	-	-	possibly_damaging(0.757)	tolerated(0.49)	neutral(0.290)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
SYT2	127833	genome.wustl.edu	37	1	202572246	202572246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136504.1	-1	validated	p.D116N	1.000	151	0%	96	10.4%	-	-	unknown(0)	tolerated(0.34)	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202700147	202700147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006618.3	-1	validated	p.L1356F	1.000	130	0%	46	41.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL12	59349	genome.wustl.edu	37	1	202887459	202887459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021633.2	-1	provisional	p.L136P	1.000	145	0%	107	33.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_BACK
ENSG00000245250	0	genome.wustl.edu	37	1	202935809	202935809	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501099	+1	novel	NULL	0.004	52	0%	95	36.8%	-	-	-	-	-	-
MYBPH	4608	genome.wustl.edu	37	1	203144506	203144506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004997.2	-1	validated	p.L97M	0.139	47	0%	62	30.6%	-	-	benign(0.11)	deleterious(0.05)	neutral(0.354)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CHI3L1	1116	genome.wustl.edu	37	1	203148627	203148627	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000404436	-1	known	p.G135*	0.072	38	0%	74	20.3%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_(Trans)glycosidases
FMOD	2331	genome.wustl.edu	37	1	203311541	203311541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002023.3	-1	reviewed	p.E354V	1.000	21	0%	25	44%	-	-	benign(0.218)	tolerated(0.22)	neutral(0.064)	superfamily_SSF52058
PRELP	5549	genome.wustl.edu	37	1	203455873	203455873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002725.3	+1	reviewed	p.A338V	0.142	64	0%	91	41.8%	-	-	benign(0.008)	tolerated(0.27)	neutral(0.034)	HMMPfam_LRR_1,superfamily_L domain-like
ATP2B4	493	genome.wustl.edu	37	1	203690392	203690392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001684.3	+1	reviewed	p.A889V	1.000	100	0%	75	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ZC3H11A	9877	genome.wustl.edu	37	1	203798691	203798691	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014827.4	+1	validated	p.S137	0.946	104	0%	66	24.2%	-	-	-	-	-	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204230504	204230504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014935.2	-1	validated	p.A152S	1.000	37	0%	55	50.9%	-	-	benign(0.34)	deleterious(0.01)	deleterious(0.513)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PIK3C2B	5287	genome.wustl.edu	37	1	204409360	204409360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002646.3	-1	reviewed	p.R1113	1.000	87	0%	63	34.9%	-	-	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
LRRN2	10446	genome.wustl.edu	37	1	204588370	204588370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006338.2	-1	reviewed	p.R251W	0.037	23	0%	44	43.2%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
RBBP5	5929	genome.wustl.edu	37	1	205074201	205074201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005057.2	-1	reviewed	p.R105Q	1.000	114	0%	35	28.6%	-	-	possibly_damaging(0.813)	tolerated(0.28)	neutral(0.339)	superfamily_WD40 repeat-like
TMCC2	9911	genome.wustl.edu	37	1	205238462	205238462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014858.3	+1	validated	p.R378W	0.999	20	0%	23	26.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tmemb_cc2
PM20D1	148811	genome.wustl.edu	37	1	205799418	205799418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152491.4	-1	validated	p.D459Y	0.015	391	0%	218	39%	-	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
IKBKE	9641	genome.wustl.edu	37	1	206666692	206666692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014002.2	+1	validated	p.R676*	0.094	27	0%	32	43.8%	-	-	-	-	-	NULL
C1orf116	79098	genome.wustl.edu	37	1	207196276	207196276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023938.5	-1	validated	p.A278D	0.000	286	0%	231	37.2%	-	-	benign(0.132)	tolerated(0.15)	neutral(0.252)	NULL
CR2	1380	genome.wustl.edu	37	1	207643397	207643397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006658.2	+1	reviewed	p.R392L	0.288	62	0%	17	47.1%	-	-	possibly_damaging(0.847)	tolerated(0.08)	deleterious(0.625)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207697065	207697065	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000434033	+1	known	p.A175V	0.000	221	0%	88	42%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207751541	207751541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000651.4	+1	reviewed	p.C1643*	1.000	74	0%	29	31%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207753875	207753875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000651.4	+1	reviewed	p.F1711L	0.002	352	0%	87	44.8%	-	-	possibly_damaging(0.86)	tolerated(0.91)	neutral(0.333)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD46	4179	genome.wustl.edu	37	1	207934771	207934771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172359.1	+1	reviewed	p.R218H	0.000	226	0%	225	28.9%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
PLXNA2	5362	genome.wustl.edu	37	1	208205047	208205047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025179.3	-1	reviewed	p.R1705W	1.000	69	0%	68	41.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA2	5362	genome.wustl.edu	37	1	208227856	208227856	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025179.3	-1	reviewed	p.L922	0.000	39	0%	30	40%	-	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
LOC642587	642587	genome.wustl.edu	37	1	209602665	209602665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001104548.1	+1	validated	p.R8I	0.005	110	0%	92	39.1%	-	-	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209803266	209803266	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000228.2	-1	reviewed	p.C316	1.000	45	0%	61	11.5%	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
HSD11B1	3290	genome.wustl.edu	37	1	209878329	209878329	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005525.2	+1	reviewed	p.L14	0.186	208	0%	72	25%	-	-	-	-	-	NULL
TRAF3IP3	80342	genome.wustl.edu	37	1	209933431	209933431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025228.2	+1	reviewed	p.A16V	0.960	22	0%	17	23.5%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TRAF3IP3	80342	genome.wustl.edu	37	1	209946343	209946343	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025228.2	+1	reviewed	p.N231	1.000	134	0%	136	11.8%	-	-	-	-	-	NULL
DIEXF	27042	genome.wustl.edu	37	1	210004319	210004319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014388.5	+1	validated	p.D107N	0.000	157	0%	93	36.6%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
SERTAD4	56256	genome.wustl.edu	37	1	210414968	210414968	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019605.3	+1	validated	p.I119	0.997	79	0%	75	14.7%	-	-	-	-	-	HMMPfam_SERTA
SERTAD4	56256	genome.wustl.edu	37	1	210415617	210415617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019605.3	+1	validated	p.L336I	1.000	62	0%	52	15.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HHAT	55733	genome.wustl.edu	37	1	210591561	210591561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122834.2	+1	validated	p.R250C	1.000	61	0%	49	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
HHAT	55733	genome.wustl.edu	37	1	210637960	210637960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122834.2	+1	validated	p.R323L	1.000	112	0%	33	42.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MBOAT
DTL	51514	genome.wustl.edu	37	1	212274110	212274110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016448.2	+1	validated	p.G593D	0.322	136	0%	65	35.4%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
PPP2R5A	5525	genome.wustl.edu	37	1	212506884	212506884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006243.2	+1	reviewed	p.D142Y	1.000	133	0%	51	27.5%	-	-	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	HMMPfam_B56,superfamily_ARM repeat
FAM71A	149647	genome.wustl.edu	37	1	212799034	212799034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153606.3	+1	validated	p.T272I	0.038	26	0%	33	27.3%	-	-	possibly_damaging(0.515)	deleterious(0.04)	deleterious(0.522)	NULL
FAM71A	149647	genome.wustl.edu	37	1	212799622	212799622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153606.3	+1	validated	p.A468V	0.000	82	0%	75	36%	-	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
FAM71A	149647	genome.wustl.edu	37	1	212799686	212799686	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153606.3	+1	validated	p.S489	0.000	36	0%	52	38.5%	-	-	-	-	-	NULL
VASH2	79805	genome.wustl.edu	37	1	213146004	213146004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024749.3	+1	validated	p.V150I	0.998	157	0%	97	33%	-	-	benign(0.196)	tolerated(1)	neutral(0.018)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213251138	213251138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012424.3	+1	validated	p.F81S	1.000	167	0%	55	40%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PROX1	5629	genome.wustl.edu	37	1	214170000	214170000	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002763.3	+1	provisional	p.F41C	1.000	159	0%	180	36.7%	-	-	possibly_damaging(0.716)	deleterious(0.01)	deleterious(0.665)	HMMPfam_Prox1
PROX1	5629	genome.wustl.edu	37	1	214170724	214170724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002763.3	+1	provisional	p.E282D	0.996	65	0%	69	37.7%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Prox1
CENPF	1063	genome.wustl.edu	37	1	214794197	214794197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016343.3	+1	reviewed	p.T258I	0.000	88	0%	32	25%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214814998	214814998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016343.3	+1	reviewed	p.V1106A	0.047	108	0%	33	48.5%	-	-	benign(0.234)	tolerated(0.49)	neutral(0.034)	NULL
KCNK2	3776	genome.wustl.edu	37	1	215408380	215408380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017425.2	+1	reviewed	p.S391	0.924	117	0%	28	42.9%	-	-	-	-	-	NULL
KCTD3	51133	genome.wustl.edu	37	1	215777555	215777555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016121.3	+1	validated	p.V407A	0.996	156	0.6%	42	26.2%	-	-	probably_damaging(0.974)	tolerated(0.26)	neutral(0.450)	superfamily_WD40 repeat-like
USH2A	7399	genome.wustl.edu	37	1	215848263	215848263	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.S4330	0.718	81	0%	35	34.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215848679	215848679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.R4192C	1.000	162	0%	45	35.6%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215953252	215953252	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.Q3624	0.997	236	0%	79	36.7%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215963420	215963420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.S3388*	1.000	156	0%	41	39%	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216052118	216052118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.G2849E	1.000	161	0%	34	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216420061	216420061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206933.2	-1	reviewed	p.D892G	0.000	190	0%	47	38.3%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
ESRRG	2104	genome.wustl.edu	37	1	216692757	216692757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001438.2	-1	validated	p.S290F	1.000	78	0%	14	50%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TGFB2	7042	genome.wustl.edu	37	1	218614662	218614662	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135599.1	+1	validated	p.E429	1.000	181	0%	48	31.2%	-	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
EPRS	2058	genome.wustl.edu	37	1	220195799	220195799	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004446.2	-1	reviewed	p.S335	0.997	327	0%	128	34.4%	-	-	-	-	-	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
IARS2	55699	genome.wustl.edu	37	1	220275516	220275516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018060.3	+1	validated	p.F199C	1.000	164	0%	162	30.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
RAB3GAP2	25782	genome.wustl.edu	37	1	220364442	220364442	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012414.3	-1	reviewed	p.R485	0.733	137	0%	21	33.3%	-	-	-	-	-	NULL
MARK1	4139	genome.wustl.edu	37	1	220752806	220752806	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018650.3	+1	validated	p.Q54	1.000	107	0%	36	33.3%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
MARC2	54996	genome.wustl.edu	37	1	220928288	220928288	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017898.3	+1	provisional	e2-1	1.000	197	0%	216	38.4%	-	-	-	-	-	-
DUSP10	11221	genome.wustl.edu	37	1	221912919	221912919	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007207.3	-1	reviewed	p.A56	1.000	97	0%	126	40.5%	-	-	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222838879	222838879	+	Missense_Mutation	SNP	C	C	A	rs183067270	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198551.2	+1	validated	p.P1881Q	0.975	103	0%	53	35.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM177B	400823	genome.wustl.edu	37	1	222922374	222922374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000391880	+1	known	p.S105P	0.508	186	0%	61	39.3%	-	-	benign(0.205)	tolerated(0.07)	neutral(0.339)	NULL
DISP1	84976	genome.wustl.edu	37	1	223177026	223177026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032890.2	+1	reviewed	p.R763C	1.000	100	0%	30	43.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Patched
DISP1	84976	genome.wustl.edu	37	1	223177981	223177981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032890.2	+1	reviewed	p.S1081Y	1.000	85	0%	48	35.4%	-	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	HMMPfam_Patched,superfamily_SSF82866
TLR5	7100	genome.wustl.edu	37	1	223283825	223283825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003268.5	-1	reviewed	p.P850Q	0.000	106	0%	97	33%	-	-	benign(0.004)	tolerated(0.62)	neutral(0.004)	NULL
C1orf65	164127	genome.wustl.edu	37	1	223567983	223567983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152610.2	+1	validated	p.L389H	0.000	12	0%	21	52.4%	-	-	probably_damaging(0.97)	tolerated(0.08)	deleterious(0.712)	NULL
CAPN2	824	genome.wustl.edu	37	1	223938639	223938639	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001748.4	+1	reviewed	p.P287	1.000	107	0%	161	33.5%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN2	824	genome.wustl.edu	37	1	223943295	223943295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001748.4	+1	reviewed	p.R417W	1.000	112	0%	175	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
NVL	4931	genome.wustl.edu	37	1	224420956	224420956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002533.2	-1	validated	p.S801Y	0.984	167	0%	103	40.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
NVL	4931	genome.wustl.edu	37	1	224482063	224482063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002533.2	-1	validated	p.N411D	1.000	96	0%	54	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225270264	225270264	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001373.1	+1	validated	p.S1050	0.011	47	0%	27	29.6%	-	-	-	-	-	HMMPfam_DHC_N2
DNAH14	127602	genome.wustl.edu	37	1	225332189	225332189	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000330118	+1	known	p.A184V	0.989	89	0%	26	15.4%	-	-	-	-	-	NULL
DNAH14	127602	genome.wustl.edu	37	1	225340565	225340565	+	Missense_Mutation	SNP	C	C	T	rs183567269	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001373.1	+1	validated	p.R1709C	0.013	150	0%	68	36.8%	-	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LBR	3930	genome.wustl.edu	37	1	225609877	225609877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002296.2	-1	reviewed	p.P90S	0.000	50	0%	55	14.5%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
LBR	3930	genome.wustl.edu	37	1	225609909	225609909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002296.2	-1	reviewed	p.R79Q	0.666	55	0%	55	27.3%	-	-	possibly_damaging(0.931)	deleterious(0.02)	deleterious(0.760)	NULL
ENAH	55740	genome.wustl.edu	37	1	225695652	225695652	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008493.1	-1	validated	e11+1	1.000	162	0%	57	38.6%	-	-	-	-	-	-
ENAH	55740	genome.wustl.edu	37	1	225706963	225706963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008493.1	-1	validated	p.R247*	0.974	369	0%	308	35.4%	-	-	-	-	-	NULL
ENAH	55740	genome.wustl.edu	37	1	225707149	225707149	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008493.1	-1	validated	p.R185*	0.996	277	0%	284	40.5%	-	-	-	-	-	NULL
ITPKB	3707	genome.wustl.edu	37	1	226829674	226829674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002221.3	-1	reviewed	p.R800Q	1.000	54	0%	114	42.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IPK,superfamily_SAICAR synthase-like
CDC42BPA	8476	genome.wustl.edu	37	1	227288785	227288785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000442054	-1	known	p.E13*	1.000	126	0%	61	27.9%	-	-	possibly_damaging(0.655)	tolerated(0.18)	neutral(0.287)	NULL
C1orf35	79169	genome.wustl.edu	37	1	228288863	228288863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024319.2	-1	provisional	p.R254H	0.000	106	0%	188	40.4%	-	-	benign(0.004)	tolerated(0.36)	neutral(0.020)	NULL
GUK1	2987	genome.wustl.edu	37	1	228334611	228334611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000858.5	+1	validated	p.E75K	1.000	75	0%	177	38.4%	-	-	benign(0.022)	tolerated(0.26)	neutral(0.035)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
OBSCN	84033	genome.wustl.edu	37	1	228403340	228403340	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098623.1	+1	reviewed	p.D635	1.000	53	0%	99	37.4%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228486281	228486281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000366707	+1	known	p.R1048I	0.000	64	0%	33	27.3%	-	-	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228521334	228521334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098623.1	+1	reviewed	p.A5303T	0.001	60	0%	99	34.3%	-	-	benign(0.017)	tolerated(0.62)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228547369	228547369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052843.2	+1	reviewed	p.R6259H	0.948	15	0%	44	20.5%	-	-	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228558760	228558760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098623.1	+1	reviewed	p.R6761C	1.000	19	0%	41	14.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228564758	228564758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098623.1	+1	reviewed	p.R7682H	1.000	15	0%	28	28.6%	-	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OBSCN	84033	genome.wustl.edu	37	1	228565355	228565355	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000441106	+1	known	p.P2432S	0.016	77	0%	135	32.6%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRIM11	81559	genome.wustl.edu	37	1	228582687	228582687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145214.2	-1	reviewed	p.G376S	0.615	58	0%	117	15.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
HIST3H3	8290	genome.wustl.edu	37	1	228612855	228612855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003493.2	-1	reviewed	p.S58P	1.000	64	0%	98	25.5%	-	-	possibly_damaging(0.848)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST3H3	8290	genome.wustl.edu	37	1	228612947	228612947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003493.2	-1	reviewed	p.R27H	0.999	20	0%	56	23.2%	-	-	benign(0.003)	-	-	superfamily_Histone-fold
HIST3H2BB	128312	genome.wustl.edu	37	1	228645850	228645850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175055.2	+1	reviewed	p.S7L	0.021	115	0%	201	38.8%	-	-	benign(0.103)	deleterious(0)	neutral(0.453)	superfamily_Histone-fold
NUP133	55746	genome.wustl.edu	37	1	229622245	229622245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018230.2	-1	reviewed	p.G458D	0.975	157	0%	78	12.8%	-	-	benign(0.004)	tolerated(0.68)	neutral(0.002)	HMMPfam_Nup133_N
TAF5L	27097	genome.wustl.edu	37	1	229738141	229738141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014409.3	-1	reviewed	p.T258N	1.000	106	0%	65	32.3%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMSmart_SM00320,superfamily_WD40 repeat-like
TAF5L	27097	genome.wustl.edu	37	1	229750222	229750222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014409.3	-1	reviewed	p.R3Q	1.000	65	0%	33	42.4%	-	-	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	NULL
URB2	9816	genome.wustl.edu	37	1	229773726	229773726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014777.2	+1	provisional	p.T1122	0.000	93	0%	81	35.8%	-	-	-	-	-	NULL
URB2	9816	genome.wustl.edu	37	1	229773870	229773870	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014777.2	+1	provisional	p.G1170	0.000	221	0%	223	30.9%	-	-	-	-	-	NULL
COG2	22796	genome.wustl.edu	37	1	230795287	230795287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007357.2	+1	reviewed	p.E50	0.993	114	0%	39	35.9%	-	-	-	-	-	HMMPfam_COG2
AGT	183	genome.wustl.edu	37	1	230846376	230846376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000029.3	-1	reviewed	p.A74V	1.000	163	0%	146	28.8%	-	-	benign(0.039)	tolerated(0.33)	neutral(0.026)	superfamily_Serpins
C1orf198	84886	genome.wustl.edu	37	1	230979399	230979399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032800.2	-1	validated	p.L210M	0.976	50	0%	49	38.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TTC13	79573	genome.wustl.edu	37	1	231060636	231060636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024525.4	-1	validated	p.R558W	0.999	184	0%	144	36.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TRIM67	440730	genome.wustl.edu	37	1	231349563	231349563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004342.3	+1	validated	p.T709M	1.000	37	0%	56	26.8%	-	-	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
EXOC8	149371	genome.wustl.edu	37	1	231472167	231472167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175876.3	-1	validated	p.A442V	1.000	27	0%	27	40.7%	-	-	possibly_damaging(0.773)	tolerated(0.27)	neutral(0.321)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488484	231488484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032018.4	+1	validated	p.D283Y	0.002	69	0%	38	36.8%	-	-	benign(0.301)	deleterious(0.05)	neutral(0.439)	NULL
EGLN1	54583	genome.wustl.edu	37	1	231556987	231556987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022051.2	-1	reviewed	p.K216N	0.170	28	0%	48	16.7%	-	-	possibly_damaging(0.642)	tolerated(0.38)	neutral(0.242)	HMMSmart_SM00702
SIPA1L2	57568	genome.wustl.edu	37	1	232650258	232650258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020808.3	-1	validated	p.K276N	0.990	81	0%	26	23.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232941414	232941414	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019090.2	+1	validated	p.D215	0.053	6	0.000	19	0.368	-	-	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233393854	233393854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014801.3	-1	provisional	p.S585F	0.998	157	0%	55	16.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RBM34	23029	genome.wustl.edu	37	1	235318412	235318412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015014.2	-1	validated	p.A122	0.600	265	0%	216	13.9%	-	-	unknown(0)	-	-	NULL
RBM34	23029	genome.wustl.edu	37	1	235323912	235323912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015014.2	-1	validated	p.Q88H	0.000	506	0%	621	11.6%	-	-	possibly_damaging(0.924)	tolerated(0.18)	neutral(0.429)	NULL
TBCE	6905	genome.wustl.edu	37	1	235577774	235577774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079515.1	+1	reviewed	p.R71H	1.000	154	0.6%	207	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAP_GLY,superfamily_SSF52047
TBCE	6905	genome.wustl.edu	37	1	235577847	235577847	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079515.1	+1	reviewed	p.P95	0.040	162	0%	203	35%	-	-	-	-	-	superfamily_SSF52047
GNG4	2786	genome.wustl.edu	37	1	235715441	235715441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098721.1	-1	validated	p.R66C	1.000	102	0%	79	29.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
LYST	1130	genome.wustl.edu	37	1	235856784	235856784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000081.2	-1	reviewed	p.V3523M	1.000	81	0%	55	36.4%	-	-	probably_damaging(0.998)	-	-	superfamily_WD40 repeat-like
LYST	1130	genome.wustl.edu	37	1	235907458	235907458	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000081.2	-1	reviewed	e28-1	1.000	95	0%	30	43.3%	-	-	-	-	-	-
LYST	1130	genome.wustl.edu	37	1	235969493	235969493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000081.2	-1	reviewed	p.F981L	0.891	110	0%	20	35%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NID1	4811	genome.wustl.edu	37	1	236187400	236187400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002508.2	-1	reviewed	p.G700S	1.000	44	0%	32	43.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
NID1	4811	genome.wustl.edu	37	1	236192981	236192981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002508.2	-1	reviewed	p.R536Q	1.000	15	0%	15	40%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
EDARADD	128178	genome.wustl.edu	37	1	236590728	236590728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145861.2	+1	reviewed	p.R66Q	0.036	76	0%	81	32.1%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
LGALS8	3964	genome.wustl.edu	37	1	236702362	236702362	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006499.3	+1	reviewed	p.V106	0.092	151	0%	125	29.6%	-	-	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
HEATR1	55127	genome.wustl.edu	37	1	236723049	236723049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018072.4	-1	validated	p.A1579T	0.998	82	0%	31	29%	-	-	possibly_damaging(0.95)	tolerated(0.14)	deleterious(0.643)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236749749	236749749	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018072.4	-1	validated	p.Y573	0.198	116	0%	36	25%	-	-	-	-	-	NULL
HEATR1	55127	genome.wustl.edu	37	1	236762843	236762843	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018072.4	-1	validated	p.V147	0.997	178	0%	85	37.6%	-	-	-	-	-	NULL
MTR	4548	genome.wustl.edu	37	1	237052485	237052485	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000254.2	+1	reviewed	p.K952	1.000	94	0%	63	33.3%	-	-	-	-	-	superfamily_Methionine synthase activation domain-like
MTR	4548	genome.wustl.edu	37	1	237057733	237057733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000254.2	+1	reviewed	p.R1094H	0.000	117	0%	101	32.7%	-	-	benign(0.095)	tolerated(0.08)	neutral(0.307)	HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like
RYR2	6262	genome.wustl.edu	37	1	237586435	237586435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035.2	+1	reviewed	p.R298C	0.940	102	0%	26	46.2%	-	-	probably_damaging(0.99)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR2	6262	genome.wustl.edu	37	1	237664113	237664113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035.2	+1	reviewed	p.R769Q	1.000	278	0%	124	40.3%	-	-	probably_damaging(0.985)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237754292	237754292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035.2	+1	reviewed	p.R1387I	1.000	67	0%	34	44.1%	-	-	benign(0.068)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237774249	237774249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035.2	+1	reviewed	p.P1624H	0.997	101	0%	58	34.5%	-	-	probably_damaging(1)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237778120	237778120	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035.2	+1	reviewed	p.L1898	1.000	44	0%	13	53.8%	-	-	-	-	-	NULL
CHRM3	1131	genome.wustl.edu	37	1	240071825	240071825	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000740.2	+1	reviewed	p.G358	0.999	24	0%	10	40%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FMN2	56776	genome.wustl.edu	37	1	240370853	240370853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020066.4	+1	validated	p.P914H	0.366	49	0%	89	34.8%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_FH2,HMMPfam_Drf_FH1
FH	2271	genome.wustl.edu	37	1	241661167	241661167	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000143.2	-1	reviewed	p.D498	0.989	183	0%	59	40.7%	-	-	-	-	-	superfamily_L-aspartase-like,HMMPfam_FumaraseC_C
FH	2271	genome.wustl.edu	37	1	241671937	241671937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000143.2	-1	reviewed	p.H235R	1.000	90	0%	39	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lyase_1,superfamily_L-aspartase-like
KMO	8564	genome.wustl.edu	37	1	241731870	241731870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003679.3	+1	validated	p.H294N	1.000	364	0%	89	28.1%	-	-	benign(0.175)	tolerated(0.26)	neutral(0.050)	superfamily_FAD/NAD(P)-binding domain
KMO	8564	genome.wustl.edu	37	1	241752099	241752099	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000366555	+1	known	p.D41N	0.695	294	0%	98	36.7%	-	-	-	-	-	NULL
CHML	1122	genome.wustl.edu	37	1	241797474	241797474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001821.3	-1	reviewed	p.P532L	0.057	125	0%	77	27.3%	-	-	benign(0.177)	tolerated(0.18)	neutral(0.073)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
CHML	1122	genome.wustl.edu	37	1	241797582	241797582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001821.3	-1	reviewed	p.S496Y	1.000	109	0%	78	23.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
WDR64	128025	genome.wustl.edu	37	1	241951227	241951227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144625.4	+1	validated	p.D471Y	0.992	248	0%	112	37.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CEP170	9859	genome.wustl.edu	37	1	243349594	243349594	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000336415	-1	known	p.S315Y	0.955	276	0%	100	25%	-	-	-	-	-	NULL
ZNF238	10472	genome.wustl.edu	37	1	244217715	244217715	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205768.2	+1	validated	p.H213	1.000	35	0%	45	11.1%	-	-	-	-	-	NULL
ZNF238	10472	genome.wustl.edu	37	1	244218356	244218356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205768.2	+1	validated	p.T427I	1.000	42	0%	44	31.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C1orf100	200159	genome.wustl.edu	37	1	244552323	244552323	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012970.1	+1	predicted	p.C132	0.001	115	0%	104	36.5%	-	-	-	-	-	NULL
ADSS	159	genome.wustl.edu	37	1	244574619	244574619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001126.2	-1	reviewed	p.R430*	1.000	230	0%	107	27.1%	-	-	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPPDE1	51029	genome.wustl.edu	37	1	244868995	244868995	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016076.3	+1	validated	p.L163	1.000	51	0%	51	13.7%	-	-	-	-	-	NULL
HNRNPU-AS1	284702	genome.wustl.edu	37	1	245005679	245005679	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026778.1	-1	predicted	NULL	0.000	103	0%	69	37.7%	-	-	-	-	-	-
HNRNPU	3192	genome.wustl.edu	37	1	245019248	245019248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031844.2	-1	reviewed	p.R709C	0.995	256	0%	168	10.7%	-	-	unknown(0)	deleterious(0)	-	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245021577	245021577	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031844.2	-1	reviewed	e7-1	1.000	61	0%	55	40%	-	-	-	-	-	-
KIF26B	55083	genome.wustl.edu	37	1	245849424	245849424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018012.3	+1	provisional	p.R1047W	0.999	15	0%	36	19.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF26B	55083	genome.wustl.edu	37	1	245849897	245849897	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018012.3	+1	provisional	p.S1204	0.020	17	0%	52	36.5%	-	-	-	-	-	NULL
KIF26B	55083	genome.wustl.edu	37	1	245850832	245850832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018012.3	+1	provisional	p.A1516V	0.805	44	0%	63	27%	-	-	benign(0.129)	tolerated(0.32)	neutral(0.035)	NULL
CNST	163882	genome.wustl.edu	37	1	246810533	246810533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152609.2	+1	validated	p.V344M	0.000	18	0%	27	40.7%	-	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
SCCPDH	51097	genome.wustl.edu	37	1	246923514	246923514	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016002.2	+1	validated	p.G325	0.998	156	0%	86	38.4%	-	-	-	-	-	HMMPfam_Saccharop_dh
AHCTF1	25909	genome.wustl.edu	37	1	247004236	247004236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015446.4	-1	validated	p.A2225T	0.998	173	0%	75	53.3%	-	-	benign(0.323)	tolerated(0.06)	neutral(0.423)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247013129	247013129	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015446.4	-1	validated	p.S2060*	0.001	528	0%	219	37%	-	-	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247051803	247051803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015446.4	-1	validated	p.D721N	1.000	108	0%	55	32.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247079624	247079624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015446.4	-1	validated	p.L65	0.975	85	0%	53	28.3%	-	-	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247081595	247081595	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015446.4	-1	validated	p.D26	0.971	136	0%	43	41.9%	-	-	-	-	-	NULL
ZNF670	93474	genome.wustl.edu	37	1	247201240	247201240	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033213.2	-1	validated	p.C227	0.774	143	0%	145	31.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC729806	729806	genome.wustl.edu	37	1	247362670	247362670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342180.1	-1	model	p.R234I	0.007	174	0%	57	31.6%	-	-	-	-	-	NULL
ZNF496	84838	genome.wustl.edu	37	1	247473645	247473645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032752.1	-1	provisional	p.Y255	0.079	66	0%	75	36%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
OR2B11	127623	genome.wustl.edu	37	1	247614654	247614654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004492.1	-1	provisional	p.V211M	0.735	97	1%	115	15.7%	-	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L8	391190	genome.wustl.edu	37	1	248112791	248112791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001963.1	+1	provisional	p.I211S	0.000	338	0.3%	90	32.2%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L13	284521	genome.wustl.edu	37	1	248263078	248263078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175911.2	+1	provisional	p.R134H	0.003	198	0%	68	39.7%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M5	127059	genome.wustl.edu	37	1	248308905	248308905	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004690.1	+1	provisional	p.G152	0.000	424	0%	161	37.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343627	248343627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004688.1	+1	provisional	p.L114I	0.000	379	0%	184	36.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248437097	248437097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004695.1	-1	provisional	p.T7I	0.026	190	0%	65	26.2%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458870	248458870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004692.1	-1	provisional	p.R4I	0.000	135	0%	61	44.3%	-	-	benign(0.045)	tolerated(0.32)	neutral(0.026)	superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512706	248512706	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001918.1	+1	provisional	p.I210	0.001	341	0%	96	9.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569380	248569380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030904.1	+1	provisional	p.L29V	0.002	154	0.6%	34	14.7%	-	-	benign(0.35)	-	-	NULL
OR14I1	401994	genome.wustl.edu	37	1	248844810	248844810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004734.1	-1	provisional	p.S266P	0.000	91	0%	92	19.6%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_7tm_1,superfamily_SSF81321
SH3BP5L	80851	genome.wustl.edu	37	1	249111056	249111056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030645.1	-1	provisional	p.S71G	1.000	114	0%	156	32.1%	-	-	benign(0.253)	tolerated(0.14)	neutral(0.276)	HMMPfam_SH3BP5
SH3BP5L	80851	genome.wustl.edu	37	1	249118990	249118990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030645.1	-1	provisional	p.S49P	0.996	183	0%	269	38.7%	-	-	possibly_damaging(0.733)	tolerated(0.08)	deleterious(0.568)	NULL
SH3BP5L	80851	genome.wustl.edu	37	1	249119038	249119038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030645.1	-1	provisional	p.A33T	0.001	152	0%	217	35%	-	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	NULL
ZNF692	55657	genome.wustl.edu	37	1	249151677	249151677	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136036.1	-1	provisional	p.P82	0.760	36	0%	79	45.6%	-	-	-	-	-	NULL
PGBD2	267002	genome.wustl.edu	37	1	249212392	249212392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170725.2	+1	validated	p.R537*	0.001	84	0%	73	31.5%	-	-	-	-	-	NULL
TMEM18	129787	genome.wustl.edu	37	2	672823	672823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152834.2	-1	validated	p.A73D	0.999	62	0%	105	36.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PXDN	7837	genome.wustl.edu	37	2	1664718	1664718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012293.1	-1	validated	p.R591H	1.000	90	0%	121	38%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PXDN	7837	genome.wustl.edu	37	2	1687500	1687500	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012293.1	-1	validated	e6-1	1.000	63	0%	103	33%	-	-	-	-	-	-
MYT1L	23040	genome.wustl.edu	37	2	1906994	1906994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015025.2	-1	validated	p.P628	0.924	188	0%	226	35.4%	-	-	-	-	-	HMMPfam_MYT1
RPS7	6201	genome.wustl.edu	37	2	3627755	3627755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011.3	+1	reviewed	p.E138K	1.000	183	0%	230	43.5%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ribosomal_S7e
SOX11	6664	genome.wustl.edu	37	2	5833043	5833043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003108.3	+1	reviewed	p.R64C	1.000	25	0%	50	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
ADAM17	6868	genome.wustl.edu	37	2	9658310	9658310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003183.4	-1	reviewed	p.D342Y	1.000	75	0%	43	32.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
NOL10	79954	genome.wustl.edu	37	2	10808807	10808807	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024894.2	-1	validated	p.L169	1.000	147	0%	60	21.7%	-	-	-	-	-	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
C2orf50	130813	genome.wustl.edu	37	2	11273642	11273642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182500.2	+1	validated	p.A61V	0.002	12	0%	12	58.3%	-	-	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
ROCK2	9475	genome.wustl.edu	37	2	11332727	11332727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004850.3	-1	reviewed	p.L1267F	1.000	111	0%	47	36.2%	-	-	possibly_damaging(0.771)	tolerated(0.07)	deleterious(0.605)	HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,superfamily_PH domain-like,superfamily_Cysteine-rich domain
LOC650157	650157	genome.wustl.edu	37	2	11491955	11491955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001129774.2	+1	model	p.T68M	1.000	45	0%	47	34%	-	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
GREB1	9687	genome.wustl.edu	37	2	11718512	11718512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014668.3	+1	reviewed	p.V243I	0.000	53	0%	59	40.7%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
GREB1	9687	genome.wustl.edu	37	2	11751081	11751081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014668.3	+1	reviewed	p.E978D	0.940	9	0.000	11	0.636	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
LPIN1	23175	genome.wustl.edu	37	2	11964789	11964789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145693.1	+1	reviewed	p.V849I	1.000	151	0%	90	31.1%	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
TRIB2	28951	genome.wustl.edu	37	2	12880833	12880833	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021643.3	+1	reviewed	p.S315	0.735	112	0%	49	46.9%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
NBAS	51594	genome.wustl.edu	37	2	15496480	15496480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015909.2	-1	validated	p.R1293H	0.609	151	0%	62	41.9%	-	-	benign(0.167)	tolerated(0.21)	neutral(0.059)	HMMPfam_Sec39
NBAS	51594	genome.wustl.edu	37	2	15564496	15564496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015909.2	-1	validated	p.E840D	0.124	195	0%	52	32.7%	-	-	possibly_damaging(0.568)	tolerated(1)	neutral(0.195)	HMMPfam_Sec39
FAM49A	81553	genome.wustl.edu	37	2	16743401	16743401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030797.3	-1	validated	p.L103I	1.000	139	0%	30	43.3%	-	-	benign(0.309)	tolerated(0.23)	neutral(0.138)	HMMPfam_DUF1394
RAD51AP2	729475	genome.wustl.edu	37	2	17697135	17697135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099218.2	-1	provisional	p.V850I	0.000	115	0%	98	14.3%	-	-	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697676	17697676	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099218.2	-1	provisional	p.S669	0.000	50	0%	37	40.5%	-	-	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698003	17698003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099218.2	-1	provisional	p.K560N	0.004	36	0%	39	43.6%	-	-	benign(0.024)	tolerated(0.38)	neutral(0.019)	NULL
SMC6	79677	genome.wustl.edu	37	2	17884432	17884432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142286.1	-1	validated	p.E712K	1.000	155	0%	28	25%	-	-	benign(0.001)	tolerated(0.89)	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
GEN1	348654	genome.wustl.edu	37	2	17946166	17946166	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130009.1	+1	validated	p.C117*	1.000	173	0%	69	33.3%	-	-	-	-	-	superfamily_PIN domain-like
NT5C1B	93034	genome.wustl.edu	37	2	18745311	18745311	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418427	-1	known	p.L183V	0.507	89	0%	106	30.2%	-	-	-	-	-	HMMPfam_5-nucleotidase
WDR35	57539	genome.wustl.edu	37	2	20153638	20153638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006657.1	-1	reviewed	p.E464*	1.000	203	0.5%	130	39.2%	-	-	-	-	-	superfamily_WD40 repeat-like
APOB	338	genome.wustl.edu	37	2	21228516	21228516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000384.2	-1	reviewed	p.S3742A	0.231	67	0%	19	26.3%	-	-	benign(0.066)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21230434	21230434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000384.2	-1	reviewed	p.F3102L	0.998	134	0%	69	34.8%	-	-	probably_damaging(0.982)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21233203	21233203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000384.2	-1	reviewed	p.I2179M	0.998	101	0%	34	44.1%	-	-	probably_damaging(0.991)	-	-	NULL
C2orf44	80304	genome.wustl.edu	37	2	24262125	24262125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025203.2	-1	validated	p.Q80H	1.000	99	0%	58	37.9%	-	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
NCOA1	8648	genome.wustl.edu	37	2	24949550	24949550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003743.4	+1	reviewed	p.A898T	0.561	130	0%	66	37.9%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ADCY3	109	genome.wustl.edu	37	2	25065244	25065244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004036.3	-1	reviewed	p.M279V	1.000	157	0%	291	34%	-	-	benign(0.007)	tolerated(0.18)	neutral(0.056)	HMMSmart_CYCc
POMC	5443	genome.wustl.edu	37	2	25384042	25384042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000939.2	-1	reviewed	p.G238S	1.000	16	0%	57	40.4%	-	-	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	HMMPfam_Op_neuropeptide
POMC	5443	genome.wustl.edu	37	2	25384103	25384103	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000939.2	-1	reviewed	p.D217	0.992	15	0%	43	46.5%	-	-	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25964903	25964903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018263.4	-1	validated	p.R1435W	1.000	80	0%	55	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASXL2	55252	genome.wustl.edu	37	2	25965156	25965156	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018263.4	-1	validated	p.V1350	0.642	76	0%	52	42.3%	-	-	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25976426	25976426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018263.4	-1	validated	p.F373L	1.000	219	0%	105	33.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25990493	25990493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018263.4	-1	validated	p.L245S	1.000	161	0%	94	47.9%	-	-	probably_damaging(0.996)	tolerated(0.45)	deleterious(0.474)	NULL
KIF3C	3797	genome.wustl.edu	37	2	26204707	26204707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002254.6	-1	validated	p.A27V	1.000	13	0%	24	25%	-	-	benign(0.005)	tolerated(0.27)	neutral(0.034)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM59B	150946	genome.wustl.edu	37	2	26409134	26409134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000380681	+1	known	p.S615I	0.967	25	0%	57	35.1%	-	-	benign(0.016)	tolerated(0.13)	neutral(0.253)	NULL
OTOF	9381	genome.wustl.edu	37	2	26683875	26683875	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194248.2	-1	reviewed	p.R1853	1.000	15	0%	47	42.6%	-	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOF	9381	genome.wustl.edu	37	2	26688623	26688623	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194248.2	-1	reviewed	p.L1572	1.000	139	0%	213	38%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOF	9381	genome.wustl.edu	37	2	26695503	26695503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194248.2	-1	reviewed	p.R1250C	0.915	38	0%	83	49.4%	-	-	benign(0.165)	tolerated(0.07)	neutral(0.334)	NULL
OTOF	9381	genome.wustl.edu	37	2	26696405	26696405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194248.2	-1	reviewed	p.R1147W	1.000	36	0%	76	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOF	9381	genome.wustl.edu	37	2	26703710	26703710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194248.2	-1	reviewed	p.P583S	1.000	21	0%	35	37.1%	-	-	benign(0.025)	tolerated(0.46)	neutral(0.013)	NULL
C2orf18	54978	genome.wustl.edu	37	2	27001109	27001109	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017877.3	+1	validated	p.S282	0.809	80	0%	96	33.3%	-	-	-	-	-	NULL
DPYSL5	56896	genome.wustl.edu	37	2	27165525	27165525	+	Silent	SNP	C	C	T	rs141571173	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020134.3	+1	validated	p.N449	0.502	25	0%	29	34.5%	-	-	-	-	-	NULL
EMILIN1	11117	genome.wustl.edu	37	2	27303606	27303606	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007046.3	+1	reviewed	p.R99	0.966	19	0%	39	25.6%	-	-	-	-	-	HMMPfam_EMI
EMILIN1	11117	genome.wustl.edu	37	2	27306360	27306360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007046.3	+1	reviewed	p.Q641K	0.824	24	0%	54	35.2%	-	-	benign(0.001)	tolerated(0.89)	-	NULL
SLC30A3	7781	genome.wustl.edu	37	2	27478261	27478261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003459.4	-1	validated	p.F362L	1.000	73	0%	109	38.5%	-	-	benign(0.3)	tolerated(0.22)	neutral(0.135)	HMMPfam_Cation_efflux
TRIM54	57159	genome.wustl.edu	37	2	27528637	27528637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032546.2	+1	reviewed	p.E307D	1.000	33	0%	46	41.3%	-	-	possibly_damaging(0.643)	tolerated(0.22)	neutral(0.268)	NULL
PPM1G	5496	genome.wustl.edu	37	2	27607750	27607750	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177983.1	-1	reviewed	p.G205	1.000	156	0%	173	32.4%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
IFT172	26160	genome.wustl.edu	37	2	27688729	27688729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015662.1	-1	validated	p.E571D	1.000	263	0%	181	11%	-	-	benign(0.086)	tolerated(0.14)	neutral(0.256)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800322	27800322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032266.3	+1	validated	p.P295S	0.008	89	0%	53	41.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27802497	27802497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032266.3	+1	validated	p.A1020T	0.001	120	0%	105	35.2%	-	-	benign(0.004)	tolerated(1)	-	NULL
ZNF512	84450	genome.wustl.edu	37	2	27823658	27823658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032434.2	+1	validated	p.K186N	1.000	148	0%	121	35.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PLB1	151056	genome.wustl.edu	37	2	28843191	28843191	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000404858	+1	known	p.S1113Y	0.064	152	0%	105	46.7%	-	-	-	-	-	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
SPDYA	245711	genome.wustl.edu	37	2	29052172	29052172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142634.1	+1	validated	p.R180Q	1.000	105	0%	62	32.3%	-	-	benign(0.027)	tolerated(0.26)	neutral(0.036)	NULL
TRMT61B	55006	genome.wustl.edu	37	2	29075289	29075289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017910.3	-1	validated	p.A357D	1.000	132	0%	87	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCD14,superfamily_SSF53335
C2orf71	388939	genome.wustl.edu	37	2	29295283	29295283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029883.1	-1	provisional	p.V615	0.998	60	0%	70	41.4%	-	-	-	-	-	NULL
ALK	238	genome.wustl.edu	37	2	30142872	30142872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004304.3	-1	reviewed	p.Q218H	1.000	13	0%	26	42.3%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
CAPN13	92291	genome.wustl.edu	37	2	30977201	30977201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144575.2	-1	validated	p.P299L	0.000	98	0%	74	37.8%	-	-	benign(0.025)	deleterious(0.05)	neutral(0.346)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
GALNT14	79623	genome.wustl.edu	37	2	31178800	31178800	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024572.2	-1	validated	p.C170	1.000	151	0%	114	36%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
CAPN14	440854	genome.wustl.edu	37	2	31397561	31397561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145122.1	-1	validated	p.A681T	0.144	106	0%	45	40%	-	-	benign(0)	tolerated(1)	-	superfamily_EF-hand
EHD3	30845	genome.wustl.edu	37	2	31489094	31489094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014600.2	+1	validated	p.L378M	1.000	73	0%	64	35.9%	-	-	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
EHD3	30845	genome.wustl.edu	37	2	31489315	31489315	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014600.2	+1	validated	p.I451	1.000	97	0%	70	37.1%	-	-	-	-	-	HMMSmart_SM00027,superfamily_EF-hand
XDH	7498	genome.wustl.edu	37	2	31562371	31562371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000379.3	-1	reviewed	p.A1253V	1.000	70	0%	56	33.9%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_Ald_xan_DH_mo_bd
XDH	7498	genome.wustl.edu	37	2	31590879	31590879	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000379.3	-1	reviewed	p.I715	0.003	254	0%	126	32.5%	-	-	-	-	-	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
SPAST	6683	genome.wustl.edu	37	2	32353548	32353548	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014946.3	+1	reviewed	p.Y415	0.982	210	0%	144	34.7%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC4	58484	genome.wustl.edu	37	2	32463314	32463314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000360906	-1	known	p.D803G	0.967	158	0%	75	40%	-	-	possibly_damaging(0.898)	tolerated(0.18)	neutral(0.410)	superfamily_RNI-like
NLRC4	58484	genome.wustl.edu	37	2	32475156	32475156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000360906	-1	known	p.D593N	0.936	152	0.7%	96	40.6%	-	-	possibly_damaging(0.68)	tolerated(0.38)	neutral(0.260)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32475905	32475905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000360906	-1	known	p.I343T	0.994	116	0%	71	38%	-	-	probably_damaging(0.99)	tolerated(0.38)	neutral(0.459)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32477528	32477528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000360906	-1	known	p.K74N	0.853	85	0%	72	34.7%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_CARD,superfamily_DEATH domain
BIRC6	57448	genome.wustl.edu	37	2	32724666	32724666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.E2841*	1.000	158	0%	91	42.9%	-	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32724960	32724960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.E2939K	1.000	127	0%	60	35%	-	-	possibly_damaging(0.95)	tolerated(0.09)	deleterious(0.690)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32726952	32726952	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.R3068	1.000	111	0%	40	35%	-	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32770835	32770835	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.E4240*	1.000	244	0%	66	31.8%	-	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32822950	32822950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.A4582D	1.000	167	0%	51	31.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
BIRC6	57448	genome.wustl.edu	37	2	32832646	32832646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016252.3	+1	reviewed	p.R4732Q	1.000	194	0%	110	33.6%	-	-	probably_damaging(0.967)	tolerated(0.38)	neutral(0.426)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
LTBP1	4052	genome.wustl.edu	37	2	33246091	33246091	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206943.2	+1	reviewed	p.S227	0.045	30	0%	15	46.7%	-	-	-	-	-	superfamily_EGF/Laminin
RASGRP3	25780	genome.wustl.edu	37	2	33752306	33752306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001139488.1	+1	validated	p.V304L	1.000	76	0%	20	45%	-	-	possibly_damaging(0.631)	deleterious(0.01)	deleterious(0.626)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CRIM1	51232	genome.wustl.edu	37	2	36706749	36706749	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016441.1	+1	provisional	p.N428	0.067	99	0%	66	34.8%	-	-	-	-	-	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
CRIM1	51232	genome.wustl.edu	37	2	36740849	36740849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016441.1	+1	provisional	p.P644L	1.000	60	0%	24	25%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
VIT	5212	genome.wustl.edu	37	2	36986230	36986230	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000457137	+1	known	p.S176	0.000	60	0%	35	45.7%	-	-	-	-	-	NULL
VIT	5212	genome.wustl.edu	37	2	37008902	37008902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053276.3	+1	validated	p.L279I	0.874	117	0%	72	38.9%	-	-	benign(0.01)	tolerated(0.23)	neutral(0.042)	NULL
EIF2AK2	5610	genome.wustl.edu	37	2	37368752	37368752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135651.1	-1	validated	p.K111N	0.700	135	0%	48	35.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
C2orf56	55471	genome.wustl.edu	37	2	37459346	37459346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144736.4	+1	validated	p.I51M	0.878	96	0%	155	17.4%	-	-	possibly_damaging(0.873)	deleterious(0.04)	deleterious(0.688)	NULL
CDC42EP3	10602	genome.wustl.edu	37	2	37872975	37872975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006449.3	-1	reviewed	p.K252N	1.000	71	0%	41	34.1%	-	-	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	NULL
LOC344382	344382	genome.wustl.edu	37	2	38044529	38044529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_293026.6	+1	model	p.L158I	1.000	347	0%	161	37.9%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
CYP1B1-AS1	285154	genome.wustl.edu	37	2	38407828	38407828	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_027252.1	+1	predicted	NULL	0.000	171	0%	67	26.9%	-	-	-	-	-	-
ATL2	64225	genome.wustl.edu	37	2	38526398	38526398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135673.1	-1	validated	p.Q400H	1.000	22	0%	11	54.5%	-	-	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
ATL2	64225	genome.wustl.edu	37	2	38570504	38570504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135673.1	-1	validated	p.R90Q	0.784	86	0%	34	50%	-	-	possibly_damaging(0.518)	tolerated(0.25)	neutral(0.211)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
GALM	130589	genome.wustl.edu	37	2	38956730	38956730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138801.2	+1	reviewed	p.D223N	1.000	86	0%	80	33.8%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Aldose_epim,superfamily_Galactose mutarotase-like
SRSF7	6432	genome.wustl.edu	37	2	38976467	38976467	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000425778	-1	known	p.S136	1.000	4	0.000	7	0.571	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39029908	39029908	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452978	-1	known	p.R601C	0.889	134	0%	103	31.1%	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39053705	39053705	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452978	-1	known	p.R246*	0.253	177	0%	86	41.9%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX57	90957	genome.wustl.edu	37	2	39089308	39089308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198963.1	-1	provisional	p.F184Y	1.000	98	0%	30	40%	-	-	possibly_damaging(0.464)	tolerated(0.09)	neutral(0.449)	HMMPfam_UBA
MAP4K3	8491	genome.wustl.edu	37	2	39553082	39553082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003618.2	-1	reviewed	p.K228T	1.000	106	0%	21	28.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EML4	27436	genome.wustl.edu	37	2	42511826	42511826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019063.3	+1	validated	p.V332M	1.000	257	0%	112	41.1%	-	-	possibly_damaging(0.81)	tolerated(0.17)	neutral(0.364)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MTA3	57504	genome.wustl.edu	37	2	42935167	42935167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020744.2	+1	provisional	p.E425D	0.996	141	0%	69	34.8%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMSmart_ZnF_GATA
LOC728819	728819	genome.wustl.edu	37	2	43902718	43902718	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101330.1	-1	provisional	p.I248	0.029	146	0%	199	32.7%	-	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43937362	43937362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172069.3	+1	validated	p.P703S	1.000	219	0%	122	39.3%	-	-	possibly_damaging(0.485)	tolerated(0.98)	neutral(0.161)	superfamily_PH domain-like
ABCG8	64241	genome.wustl.edu	37	2	44078820	44078820	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022437.2	+1	reviewed	p.S140	0.003	38	0%	60	38.3%	-	-	-	-	-	HMMPfam_ABC_tran,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRPPRC	10128	genome.wustl.edu	37	2	44145508	44145508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133259.3	-1	reviewed	p.A976T	0.999	110	0%	34	38.2%	-	-	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	HMMPfam_PPR,superfamily_SSF48452
SIX3	6496	genome.wustl.edu	37	2	45169813	45169813	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005413.3	+1	reviewed	p.K190	1.000	10	0%	18	22.2%	-	-	-	-	-	NULL
SIX2	10736	genome.wustl.edu	37	2	45233612	45233612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016932.4	-1	reviewed	p.E191D	0.998	33	0%	69	40.6%	-	-	possibly_damaging(0.472)	tolerated(0.29)	neutral(0.185)	superfamily_Homeodomain_like
SRBD1	55133	genome.wustl.edu	37	2	45715466	45715466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018079.4	-1	validated	p.V627I	0.997	104	0%	42	40.5%	-	-	benign(0.247)	tolerated(0.18)	neutral(0.081)	HMMSmart_SM00732
SRBD1	55133	genome.wustl.edu	37	2	45826722	45826722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018079.4	-1	validated	p.D172N	0.998	364	0.5%	164	31.1%	-	-	possibly_damaging(0.951)	deleterious(0.04)	deleterious(0.743)	NULL
SRBD1	55133	genome.wustl.edu	37	2	45829168	45829168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018079.4	-1	validated	p.K45N	1.000	205	0%	133	36.8%	-	-	possibly_damaging(0.477)	tolerated(0.07)	deleterious(0.477)	NULL
PRKCE	5581	genome.wustl.edu	37	2	46411873	46411873	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005400.2	+1	reviewed	e15-1	1.000	89	0%	76	27.6%	-	-	-	-	-	-
EPAS1	2034	genome.wustl.edu	37	2	46605092	46605092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001430.4	+1	reviewed	p.P437S	0.991	34	0%	45	13.3%	-	-	benign(0.116)	tolerated(0.28)	neutral(0.041)	NULL
EPAS1	2034	genome.wustl.edu	37	2	46605834	46605834	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001430.4	+1	reviewed	p.N494	0.605	141	0%	157	38.2%	-	-	-	-	-	NULL
EPAS1	2034	genome.wustl.edu	37	2	46607728	46607728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001430.4	+1	reviewed	p.W639*	1.000	26	0%	48	37.5%	-	-	-	-	-	NULL
ATP6V1E2	90423	genome.wustl.edu	37	2	46739262	46739262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080653.3	-1	validated	p.E197*	1.000	151	0%	97	42.3%	-	-	-	-	-	HMMPfam_vATP-synt_E
SOCS5	9655	genome.wustl.edu	37	2	46985952	46985952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014011.4	+1	reviewed	p.E95K	1.000	111	0%	38	26.3%	-	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	NULL
MSH6	2956	genome.wustl.edu	37	2	48027998	48027998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000179.2	+1	reviewed	p.R959H	1.000	59	0%	22	22.7%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_IV
MSH6	2956	genome.wustl.edu	37	2	48030613	48030613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000179.2	+1	reviewed	p.R1076H	1.000	230	0%	59	28.8%	-	-	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	HMMPfam_MutS_V,HMMSmart_SM00533,superfamily_P-loop containing nucleoside triphosphate hydrolases
LHCGR	3973	genome.wustl.edu	37	2	48915276	48915276	+	Nonsense_Mutation	SNP	G	G	A	rs121912524		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000233.3	-1	reviewed	p.R554*	1.000	118	0%	46	39.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49216149	49216149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000145.3	-1	reviewed	p.S164Y	1.000	195	0%	134	32.1%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_L domain-like
NRXN1	9378	genome.wustl.edu	37	2	50699567	50699567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135659.1	-1	reviewed	p.S1078F	1.000	154	0%	32	34.4%	-	-	benign(0.388)	tolerated(0.12)	neutral(0.385)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50765725	50765725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135659.1	-1	reviewed	p.E643D	1.000	129	0%	28	42.9%	-	-	benign(0.006)	tolerated(0.79)	neutral(0.001)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50780016	50780016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135659.1	-1	reviewed	p.F530V	1.000	223	0%	203	24.1%	-	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	superfamily_ConA_like_lec_gl
NRXN1	9378	genome.wustl.edu	37	2	50850520	50850520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135659.1	-1	reviewed	p.E389K	1.000	106	0%	21	28.6%	-	-	probably_damaging(0.994)	tolerated(0.43)	neutral(0.466)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	51255159	51255159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135659.1	-1	reviewed	p.R85C	0.809	11	0%	14	57.1%	-	-	possibly_damaging(0.493)	deleterious(0)	deleterious(0.609)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ASB3	51130	genome.wustl.edu	37	2	53977983	53977983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016115.3	-1	reviewed	p.L98I	1.000	85	0%	34	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TSPYL6	388951	genome.wustl.edu	37	2	54482763	54482763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003937.2	-1	validated	p.E176K	0.003	46	0%	51	39.2%	-	-	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54848576	54848576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003128.2	+1	reviewed	p.T268N	1.000	152	0%	73	35.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SPTBN1	6711	genome.wustl.edu	37	2	54851967	54851967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003128.2	+1	reviewed	p.E403D	1.000	43	0%	44	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54853119	54853119	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003128.2	+1	reviewed	p.H464	0.305	176	0%	105	36.2%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54870248	54870248	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003128.2	+1	reviewed	p.W1329*	1.000	97	0%	50	34%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54873374	54873374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003128.2	+1	reviewed	p.D1543G	1.000	34	0%	25	28%	-	-	possibly_damaging(0.494)	tolerated(0.38)	neutral(0.182)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EML6	400954	genome.wustl.edu	37	2	55179807	55179807	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039753.2	+1	validated	p.N1430	0.995	64	0%	35	28.6%	-	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML6	400954	genome.wustl.edu	37	2	55184962	55184962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039753.2	+1	validated	p.R1508C	1.000	48	0%	50	42%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
RTN4	57142	genome.wustl.edu	37	2	55253387	55253387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020532.4	-1	reviewed	p.M616I	1.000	77	0%	21	47.6%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
MTIF2	4528	genome.wustl.edu	37	2	55470612	55470612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005369.1	-1	reviewed	p.P502S	0.000	210	0%	80	46.3%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	superfamily_SSF52156
MTIF2	4528	genome.wustl.edu	37	2	55481925	55481925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005369.1	-1	reviewed	p.D123G	0.999	281	0%	102	19.6%	-	-	possibly_damaging(0.825)	tolerated(0.47)	neutral(0.324)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55544796	55544796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135597.1	-1	validated	p.R1168H	1.000	147	0%	45	33.3%	-	-	possibly_damaging(0.798)	tolerated(0.08)	deleterious(0.601)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55561943	55561943	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135597.1	-1	validated	p.N672H	1.000	75	0%	43	34.9%	-	-	possibly_damaging(0.789)	tolerated(0.58)	neutral(0.301)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55573453	55573453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135597.1	-1	validated	p.S300L	1.000	136	0.7%	61	32.8%	-	-	benign(0.055)	tolerated(0.09)	neutral(0.300)	NULL
CCDC85A	114800	genome.wustl.edu	37	2	56420025	56420025	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080433.1	+1	provisional	p.S230R	0.054	13	0%	36	33.3%	-	-	possibly_damaging(0.677)	tolerated(0.06)	deleterious(0.564)	NULL
VRK2	7444	genome.wustl.edu	37	2	58373534	58373534	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130480.1	+1	reviewed	p.S369	0.296	374	0%	137	43.8%	-	-	-	-	-	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61009891	61009891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022894.2	+1	reviewed	p.F366L	0.998	131	0%	73	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain
REL	5966	genome.wustl.edu	37	2	61118895	61118895	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002908.2	+1	validated	p.R30*	1.000	190	0%	85	28.2%	-	-	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_RHD
PUS10	150962	genome.wustl.edu	37	2	61236045	61236045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144709.2	-1	validated	p.D78Y	0.932	107	0.9%	60	26.7%	-	-	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
PEX13	5194	genome.wustl.edu	37	2	61259042	61259042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002618.3	+1	reviewed	p.R194Q	1.000	119	0%	50	40%	-	-	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	HMMPfam_Peroxin-13_N
USP34	9736	genome.wustl.edu	37	2	61431442	61431442	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014709.3	-1	validated	p.P3111	0.995	137	0%	65	49.2%	-	-	-	-	-	NULL
FAM161A	84140	genome.wustl.edu	37	2	62067079	62067079	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032180.2	-1	validated	p.R354*	0.004	127	0%	53	32.1%	-	-	-	-	-	HMMPfam_UPF0564
B3GNT2	10678	genome.wustl.edu	37	2	62449791	62449791	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006577.5	+1	reviewed	p.L146	1.000	108	0%	71	23.9%	-	-	-	-	-	NULL
OTX1	5013	genome.wustl.edu	37	2	63282759	63282759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014562.2	+1	reviewed	p.G125S	1.000	19	0%	34	55.9%	-	-	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	NULL
OTX1	5013	genome.wustl.edu	37	2	63283118	63283118	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014562.2	+1	reviewed	p.G244	0.995	41	0%	96	28.1%	-	-	-	-	-	HMMPfam_TF_Otx
MDH1	4190	genome.wustl.edu	37	2	63832497	63832497	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005917.2	+1	reviewed	p.H253	0.991	64	0%	51	31.4%	-	-	-	-	-	HMMPfam_Ldh_1_C,superfamily_LDH C-terminal domain-like
ACTR2	10097	genome.wustl.edu	37	2	65488393	65488393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005386.2	+1	reviewed	p.R255C	1.000	191	0%	105	30.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ETAA1	54465	genome.wustl.edu	37	2	67632300	67632300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019002.3	+1	validated	p.S829Y	0.866	73	0%	42	42.9%	-	-	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	NULL
ARHGAP25	9938	genome.wustl.edu	37	2	69034366	69034366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000497259	+1	known	p.H2Y	0.000	93	0%	50	28%	-	-	unknown(0)	-	-	NULL
ENSG00000251850	0	genome.wustl.edu	37	2	69409060	69409060	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000516041	-1	novel	NULL	0.048	46	0%	34	26.5%	-	-	-	-	-	-
GFPT1	2673	genome.wustl.edu	37	2	69590776	69590776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002056.2	-1	reviewed	p.E84*	1.000	191	0%	99	40.4%	-	-	-	-	-	HMMPfam_GATase_2,superfamily_SSF56235
GMCL1	64395	genome.wustl.edu	37	2	70070343	70070343	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178439.3	+1	provisional	p.C214	1.000	192	0%	130	42.3%	-	-	-	-	-	NULL
PCYOX1	51449	genome.wustl.edu	37	2	70502226	70502226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016297.3	+1	validated	p.E210D	1.000	128	0%	100	41%	-	-	possibly_damaging(0.587)	tolerated(0.38)	neutral(0.220)	HMMPfam_Prenylcys_lyase,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain
VAX2	25806	genome.wustl.edu	37	2	71160114	71160114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012476.2	+1	reviewed	p.S218F	0.115	26	0%	62	43.5%	-	-	possibly_damaging(0.822)	tolerated(0.07)	deleterious(0.630)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71185508	71185508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001692.3	+1	reviewed	p.E107K	1.000	72	0%	92	34.8%	-	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMPfam_ATP-synt_ab_N
MPHOSPH10	10199	genome.wustl.edu	37	2	71360108	71360108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005791.1	+1	reviewed	p.R57M	0.000	44	0%	47	36.2%	-	-	benign(0.107)	tolerated(0.09)	neutral(0.305)	HMMPfam_Mpp10
DYSF	8291	genome.wustl.edu	37	2	71681147	71681147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130981.1	+1	reviewed	p.L7F	1.000	30	0%	62	37.1%	-	-	benign(0.204)	tolerated(0.11)	neutral(0.291)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
DYSF	8291	genome.wustl.edu	37	2	71797845	71797845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130987.1	+1	reviewed	p.L1068I	1.000	69	0%	98	35.7%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
DYSF	8291	genome.wustl.edu	37	2	71871127	71871127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130987.1	+1	reviewed	p.F1520L	1.000	98	0%	82	52.4%	-	-	benign(0.329)	tolerated(0.29)	neutral(0.132)	NULL
DYSF	8291	genome.wustl.edu	37	2	71908182	71908182	+	Missense_Mutation	SNP	C	C	T	rs149357145	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130987.1	+1	reviewed	p.R2039W	1.000	27	0%	40	15%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYSF	8291	genome.wustl.edu	37	2	71909728	71909728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130987.1	+1	reviewed	p.R2081H	1.000	264	0%	228	38.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EXOC6B	23233	genome.wustl.edu	37	2	72740271	72740271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015189.1	-1	validated	p.R386H	1.000	247	0%	64	31.2%	-	-	benign(0.078)	tolerated(0.05)	neutral(0.351)	NULL
SPR	6697	genome.wustl.edu	37	2	73118535	73118535	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003124.4	+1	reviewed	p.R219*	0.012	83	0%	106	12.3%	-	-	-	-	-	superfamily_NAD(P)-bd
RAB11FIP5	26056	genome.wustl.edu	37	2	73315373	73315373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015470.2	-1	validated	p.R458H	1.000	22	0%	39	28.2%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
NOTO	344022	genome.wustl.edu	37	2	73437950	73437950	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134462.1	+1	provisional	p.L217	0.954	46	0%	76	32.9%	-	-	-	-	-	HMMSmart_SM00389,superfamily_Homeodomain-like
CCT7	10574	genome.wustl.edu	37	2	73474911	73474911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006429.3	+1	reviewed	p.V214I	1.000	68	0%	38	31.6%	-	-	possibly_damaging(0.86)	tolerated(0.33)	neutral(0.357)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
FBXO41	150726	genome.wustl.edu	37	2	73492452	73492452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080410.2	-1	validated	p.G569R	0.976	13	0%	31	45.2%	-	-	benign(0.087)	tolerated(0.88)	neutral(0.006)	NULL
FBXO41	150726	genome.wustl.edu	37	2	73492512	73492512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080410.2	-1	validated	p.D549N	0.999	21	0%	49	34.7%	-	-	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
FBXO41	150726	genome.wustl.edu	37	2	73493650	73493650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080410.2	-1	validated	p.A417T	0.982	7	0.000	11	0.364	-	-	benign(0.014)	tolerated(0.12)	neutral(0.261)	NULL
FBXO41	150726	genome.wustl.edu	37	2	73493755	73493755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080410.2	-1	validated	p.A382T	1.000	8	0.000	17	0.471	-	-	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73828450	73828450	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015120.4	+1	reviewed	p.L4000	0.990	78	0%	42	47.6%	-	-	-	-	-	NULL
C2orf78	388960	genome.wustl.edu	37	2	74040930	74040930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080474.1	+1	predicted	p.L142I	0.007	67	0%	82	15.9%	-	-	benign(0.41)	tolerated(0.26)	neutral(0.167)	NULL
TET3	200424	genome.wustl.edu	37	2	74274034	74274034	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144993.1	+1	provisional	p.Q195	0.798	23	0%	32	46.9%	-	-	-	-	-	NULL
BOLA3	388962	genome.wustl.edu	37	2	74362731	74362731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_212552.2	-1	validated	p.P105S	1.000	320	0%	407	36.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_BolA,superfamily_BolA
MTHFD2	10797	genome.wustl.edu	37	2	74435777	74435777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006636.3	+1	reviewed	p.R164Q	1.000	401	0%	276	33.7%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd,superfamily_SSF53223
DCTN1	1639	genome.wustl.edu	37	2	74592682	74592682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004082.3	-1	reviewed	p.R997W	0.995	97	0%	125	37.6%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
RTKN	6242	genome.wustl.edu	37	2	74659598	74659598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001015055.1	-1	reviewed	p.R103W	0.989	23	0%	50	32%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MOGS	7841	genome.wustl.edu	37	2	74689389	74689389	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006302.2	-1	reviewed	p.H509	0.914	74	0%	169	39.1%	-	-	-	-	-	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases
HK2	3099	genome.wustl.edu	37	2	75106019	75106019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000189.4	+1	reviewed	p.V412	0.032	26	0%	43	30.2%	-	-	-	-	-	HMMPfam_Hexokinase_2,superfamily_SSF53067
GCFC2	6936	genome.wustl.edu	37	2	75917768	75917768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003203.4	-1	validated	p.R408*	1.000	115	0%	33	36.4%	-	-	-	-	-	HMMPfam_GCFC
LRRTM4	80059	genome.wustl.edu	37	2	76975868	76975868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134745.1	-1	validated	p.A576T	0.985	95	1.1%	69	31.9%	-	-	possibly_damaging(0.837)	deleterious(0.03)	deleterious(0.684)	NULL
CTNNA2	1496	genome.wustl.edu	37	2	79971520	79971520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004389.3	+1	validated	p.T37I	1.000	72	0%	39	33.3%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_Vinculin
CTNNA2	1496	genome.wustl.edu	37	2	80096961	80096961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004389.3	+1	validated	p.A162V	1.000	78	0%	55	34.5%	-	-	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
LRRTM1	347730	genome.wustl.edu	37	2	80530117	80530117	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178839.4	-1	validated	p.F276	1.000	43	0%	88	42%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
CTNNA2	1496	genome.wustl.edu	37	2	80801343	80801343	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004389.3	+1	validated	p.N599	0.991	176	0%	51	15.7%	-	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
DNAH6	1768	genome.wustl.edu	37	2	84864468	84864468	+	Silent	SNP	G	G	A	rs146868345	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001370.1	+1	validated	p.A1596	0.003	122	0%	31	45.2%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84921574	84921574	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001370.1	+1	validated	p.K2498	0.998	176	0%	68	30.9%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84932638	84932638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001370.1	+1	validated	p.L2832I	1.000	95	1.1%	37	32.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84972330	84972330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001370.1	+1	validated	p.S3490Y	0.433	136	0%	63	38.1%	-	-	possibly_damaging(0.508)	tolerated(0.5)	neutral(0.180)	HMMPfam_Dynein_heavy
C2orf89	129293	genome.wustl.edu	37	2	85051165	85051165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080824.1	-1	predicted	p.E367K	0.000	148	1.4%	116	37.9%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
KCMF1	56888	genome.wustl.edu	37	2	85280420	85280420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020122.4	+1	validated	p.A345V	1.000	59	0%	23	34.8%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ATOH8	84913	genome.wustl.edu	37	2	85991242	85991242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032827.6	+1	validated	p.F299L	1.000	20	0%	41	34.1%	-	-	possibly_damaging(0.495)	tolerated(0.27)	neutral(0.199)	NULL
POLR1A	25885	genome.wustl.edu	37	2	86302261	86302261	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015425.3	-1	validated	p.D501	0.959	50	0%	52	36.5%	-	-	-	-	-	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1A	25885	genome.wustl.edu	37	2	86302316	86302316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015425.3	-1	validated	p.A483V	1.000	50	0%	57	14%	-	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1A	25885	genome.wustl.edu	37	2	86317021	86317021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015425.3	-1	validated	p.S155Y	0.001	197	0%	123	34.1%	-	-	unknown(0)	-	-	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
KDM3A	55818	genome.wustl.edu	37	2	86682259	86682259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018433.5	+1	reviewed	p.E169*	1.000	171	0%	63	38.1%	-	-	-	-	-	NULL
KDM3A	55818	genome.wustl.edu	37	2	86683973	86683973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018433.5	+1	reviewed	p.V243F	1.000	296	0%	83	32.5%	-	-	possibly_damaging(0.843)	tolerated(0.26)	neutral(0.357)	NULL
SMYD1	150572	genome.wustl.edu	37	2	88387579	88387579	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198274.2	+1	provisional	p.S171	0.001	32	0%	39	48.7%	-	-	-	-	-	HMMSmart_SET,superfamily_SSF82199
FABP1	2168	genome.wustl.edu	37	2	88424053	88424053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001443.1	-1	reviewed	p.I98T	0.999	137	0%	67	28.4%	-	-	possibly_damaging(0.726)	deleterious(0.04)	deleterious(0.613)	HMMPfam_Lipocalin,superfamily_Lipocalins
EIF2AK3	9451	genome.wustl.edu	37	2	88870408	88870408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004836.5	-1	reviewed	p.Y990C	1.000	261	0%	74	33.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPIA	22934	genome.wustl.edu	37	2	88999546	88999546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144563.2	+1	reviewed	p.E122D	1.000	236	0%	106	39.6%	-	-	benign(0.338)	tolerated(0.28)	neutral(0.138)	superfamily_SSF100950
RPIA	22934	genome.wustl.edu	37	2	89035238	89035238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144563.2	+1	reviewed	p.V194M	1.000	153	0%	95	31.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rib_5-P_isom_A,superfamily_SSF100950
IGKV1-5	28299	genome.wustl.edu	37	2	89247063	89247063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000496168	-1	known	p.S36F	0.000	257	0%	128	35.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1D-43	28891	genome.wustl.edu	37	2	90249317	90249317	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000468879	+1	known	p.T91	0.217	301	0%	79	45.6%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PROM2	150696	genome.wustl.edu	37	2	95945633	95945633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144707.2	+1	reviewed	p.V439M	0.909	123	0%	201	36.3%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Prominin
PROM2	150696	genome.wustl.edu	37	2	95952596	95952596	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144707.2	+1	reviewed	p.P695	0.003	71	0%	124	37.1%	-	-	-	-	-	HMMPfam_Prominin
PROM2	150696	genome.wustl.edu	37	2	95954013	95954013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144707.2	+1	reviewed	p.R767C	0.958	58	0%	90	32.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Prominin
GPAT2	150763	genome.wustl.edu	37	2	96689938	96689938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207328.2	-1	validated	p.K606R	1.000	57	0%	95	30.5%	-	-	benign(0.014)	tolerated(0.81)	neutral(0.001)	NULL
ADRA2B	151	genome.wustl.edu	37	2	96780905	96780905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409345	-1	known	p.Q328H	0.999	41	0%	70	38.6%	-	-	possibly_damaging(0.832)	deleterious(0.05)	deleterious(0.662)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADRA2B	151	genome.wustl.edu	37	2	96781471	96781471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409345	-1	known	p.A140T	1.000	39	0%	62	35.5%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SNRNP200	23020	genome.wustl.edu	37	2	96942656	96942656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014014.3	-1	reviewed	p.P2054S	1.000	28	0%	29	41.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96944582	96944582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014014.3	-1	reviewed	p.R1763H	1.000	194	0%	151	47.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNRNP200	23020	genome.wustl.edu	37	2	96965087	96965087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014014.3	-1	reviewed	p.R237C	1.000	123	0%	95	37.9%	-	-	benign(0.404)	deleterious(0.04)	deleterious(0.479)	NULL
SNRNP200	23020	genome.wustl.edu	37	2	96967376	96967376	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014014.3	-1	reviewed	p.R154*	0.914	204	0%	211	13.3%	-	-	-	-	-	NULL
NCAPH	23397	genome.wustl.edu	37	2	97024917	97024917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015341.3	+1	reviewed	p.R448M	0.998	122	0%	68	41.2%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Barren
FER1L5	90342	genome.wustl.edu	37	2	97327509	97327509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113382.1	+1	provisional	p.C316	0.892	117	0%	74	52.7%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L5	90342	genome.wustl.edu	37	2	97355459	97355459	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113382.1	+1	provisional	p.G863	0.053	17	0%	22	36.4%	-	-	-	-	-	HMMSmart_SM00693
SEMA4C	54910	genome.wustl.edu	37	2	97526566	97526566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017789.4	-1	validated	p.G767C	0.999	33	0%	71	28.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM178B	51252	genome.wustl.edu	37	2	97541832	97541832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000305461	-1	known	p.P138S	0.009	19	0%	23	34.8%	-	-	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97853095	97853095	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000461153	+1	known	p.S700	0.001	197	0%	38	57.9%	-	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253196	98253196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001714896.2	-1	model	p.A352V	0.985	155	0%	62	32.3%	-	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253527	98253527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001714896.2	-1	model	p.D242N	1.000	39	0%	13	30.8%	-	-	-	-	-	HMMSmart_SM00398,superfamily_HMG-box
UBTFL6	643615	genome.wustl.edu	37	2	98253905	98253905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001714896.2	-1	model	p.R116C	1.000	89	0%	35	22.9%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
COX5B	1329	genome.wustl.edu	37	2	98263558	98263558	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001862.2	+1	reviewed	p.A44	0.070	399	0%	434	39.4%	-	-	-	-	-	HMMPfam_COX5B,superfamily_Rubredoxin-like
TMEM131	23505	genome.wustl.edu	37	2	98408993	98408993	+	Missense_Mutation	SNP	G	G	A	rs183353758	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015348.1	-1	validated	p.R1334C	0.995	125	0%	100	28%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98413914	98413914	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015348.1	-1	validated	p.L928	0.154	72	0%	75	33.3%	-	-	-	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98732125	98732125	+	Silent	SNP	G	G	A	rs146730095	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144992.4	+1	provisional	p.A69	0.694	163	0%	83	27.7%	-	-	unknown(0)	-	-	NULL
CNGA3	1261	genome.wustl.edu	37	2	99012788	99012788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001298.2	+1	reviewed	p.F385L	1.000	38	0%	29	20.7%	-	-	probably_damaging(0.987)	tolerated(0.29)	neutral(0.466)	HMMPfam_Ion_trans,superfamily_SSF81324
INPP4A	3631	genome.wustl.edu	37	2	99137182	99137182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134224.1	+1	reviewed	p.E47*	1.000	113	0%	113	38.1%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TSGA10	80705	genome.wustl.edu	37	2	99725409	99725409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025244.2	-1	validated	p.R33C	1.000	198	0%	75	34.7%	-	-	benign(0.058)	deleterious(0)	neutral(0.448)	NULL
REV1	51455	genome.wustl.edu	37	2	100035344	100035344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016316.2	-1	reviewed	p.K633Q	1.000	301	0%	92	31.5%	-	-	benign(0.02)	tolerated(0.55)	neutral(0.008)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
TBC1D8	11138	genome.wustl.edu	37	2	101654967	101654967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102426.1	-1	validated	p.A396T	0.879	62	0%	52	28.8%	-	-	benign(0.048)	tolerated(0.49)	neutral(0.014)	NULL
CREG2	200407	genome.wustl.edu	37	2	102000099	102000099	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153836.3	-1	validated	p.G169	0.058	107	0%	154	40.9%	-	-	-	-	-	superfamily_FMN_binding
IL1R2	7850	genome.wustl.edu	37	2	102625093	102625093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004633.3	+1	reviewed	p.A19V	0.004	153	0%	102	42.2%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
IL1R2	7850	genome.wustl.edu	37	2	102632420	102632420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004633.3	+1	reviewed	p.Q140H	0.003	206	0%	116	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,superfamily_SSF48726
IL1R1	3554	genome.wustl.edu	37	2	102792131	102792131	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409288	+1	known	p.K443	0.002	196	0%	90	41.1%	-	-	-	-	-	NULL
IL18RAP	8807	genome.wustl.edu	37	2	103040785	103040785	+	Missense_Mutation	SNP	G	G	T	rs150564503	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003853.2	+1	reviewed	p.D164Y	0.000	170	0%	44	31.8%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00409
SLC9A4	389015	genome.wustl.edu	37	2	103090325	103090325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011552.3	+1	validated	p.S36F	0.004	168	0%	86	30.2%	-	-	possibly_damaging(0.449)	deleterious(0.05)	deleterious(0.492)	NULL
SLC9A4	389015	genome.wustl.edu	37	2	103090413	103090413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011552.3	+1	validated	p.D65E	0.057	107	0%	62	45.2%	-	-	benign(0.014)	tolerated(1)	neutral(0.001)	NULL
FHL2	2274	genome.wustl.edu	37	2	106002940	106002940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039492.2	-1	reviewed	p.E12K	1.000	57	0%	48	43.8%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NCK2	8440	genome.wustl.edu	37	2	106497898	106497898	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004720.2	+1	reviewed	p.I114N	1.000	21	0%	23	34.8%	-	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_SH3_1,HMMSmart_SH3
UXS1	80146	genome.wustl.edu	37	2	106739451	106739451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025076.3	-1	validated	p.T240I	1.000	61	0%	54	35.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
RGPD3	653489	genome.wustl.edu	37	2	107040312	107040312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144013.1	-1	validated	p.V1371I	0.204	245	0%	75	36%	-	-	benign(0.083)	tolerated(0.26)	neutral(0.040)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RGPD3	653489	genome.wustl.edu	37	2	107050726	107050726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144013.1	-1	validated	p.K721N	1.000	746	0%	202	24.3%	-	-	probably_damaging(0.958)	tolerated(0.13)	deleterious(0.654)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107052983	107052983	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144013.1	-1	validated	p.H507	0.805	490	0.2%	185	27.6%	-	-	-	-	-	NULL
RGPD3	653489	genome.wustl.edu	37	2	107069232	107069232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144013.1	-1	validated	p.A186T	0.998	442	0%	218	14.2%	-	-	benign(0.026)	tolerated(0.6)	neutral(0.005)	superfamily_SSF48452
SULT1C4	27233	genome.wustl.edu	37	2	108998302	108998302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006588.2	+1	reviewed	p.R85Q	0.079	106	0%	53	30.2%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCC2	9648	genome.wustl.edu	37	2	109116061	109116061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181453.3	+1	reviewed	p.S1612Y	1.000	1336	0%	515	18.3%	-	-	probably_damaging(1)	-	-	HMMPfam_GRIP,HMMSmart_Grip
GCC2	9648	genome.wustl.edu	37	2	109116157	109116157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181453.3	+1	reviewed	p.T1644M	1.000	788	0%	340	17.6%	-	-	possibly_damaging(0.911)	-	-	HMMPfam_GRIP,HMMSmart_Grip
RANBP2	5903	genome.wustl.edu	37	2	109352196	109352196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006267.4	+1	reviewed	p.S205L	0.271	357	0%	219	33.8%	-	-	unknown(0)	-	-	superfamily_SSF48452
RANBP2	5903	genome.wustl.edu	37	2	109381824	109381824	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006267.4	+1	reviewed	p.D1611fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1
RANBP2	5903	genome.wustl.edu	37	2	109383178	109383178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006267.4	+1	reviewed	p.K2061N	1.000	201	0%	66	28.8%	-	-	probably_damaging(1)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
CCDC138	165055	genome.wustl.edu	37	2	109429304	109429304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144978.1	+1	provisional	p.R321I	0.998	146	0%	45	26.7%	-	-	possibly_damaging(0.444)	deleterious(0.01)	deleterious(0.550)	NULL
EDAR	10913	genome.wustl.edu	37	2	109527248	109527248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022336.3	-1	reviewed	p.E238D	1.000	122	0%	166	33.1%	-	-	probably_damaging(0.974)	tolerated(0.15)	deleterious(0.657)	NULL
SH3RF3	344558	genome.wustl.edu	37	2	110015330	110015330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000309415	+1	known	p.S410R	1.000	49	0%	78	39.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SEPT10	151011	genome.wustl.edu	37	2	110301834	110301834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000334001	-1	known	p.K500N	0.953	96	0%	47	40.4%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
SEPT10	151011	genome.wustl.edu	37	2	110332246	110332246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144710.2	-1	reviewed	p.R171H	1.000	164	0%	63	27%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANAPC1	64682	genome.wustl.edu	37	2	112620057	112620057	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022662.2	-1	validated	p.S391A	0.824	96	0%	56	12.5%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112622482	112622482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022662.2	-1	validated	p.M244I	1.000	167	0%	88	25%	-	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
ZC3H8	84524	genome.wustl.edu	37	2	112989460	112989460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032494.2	-1	validated	p.F266L	1.000	183	0%	95	9.5%	-	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
ZC3H6	376940	genome.wustl.edu	37	2	113067714	113067714	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198581.2	+1	validated	p.Q197*	1.000	89	0%	21	38.1%	-	-	-	-	-	NULL
CHCHD5	84269	genome.wustl.edu	37	2	113343594	113343594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032309.2	+1	provisional	p.L16M	0.993	32	0%	64	21.9%	-	-	benign(0.107)	tolerated(0.18)	neutral(0.065)	HMMPfam_CHCH
SLC20A1	6574	genome.wustl.edu	37	2	113416970	113416970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005415.3	+1	provisional	p.R413K	1.000	124	0%	67	28.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PHO4
PSD4	23550	genome.wustl.edu	37	2	113943775	113943775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012455.2	+1	validated	p.A524V	0.000	47	0%	40	25%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
PSD4	23550	genome.wustl.edu	37	2	113950926	113950926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012455.2	+1	validated	p.P671S	1.000	70	0%	92	32.6%	-	-	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
DPP10	57628	genome.wustl.edu	37	2	116573305	116573305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020868.3	+1	validated	p.K650N	1.000	204	0%	175	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
DDX18	8886	genome.wustl.edu	37	2	118579628	118579628	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006773.3	+1	reviewed	p.D314	1.000	161	0%	105	29.5%	-	-	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
CCDC93	54520	genome.wustl.edu	37	2	118758439	118758439	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019044.3	-1	validated	p.Q107	1.000	144	0%	59	33.9%	-	-	-	-	-	HMMPfam_KOG2701
SCTR	6344	genome.wustl.edu	37	2	120206329	120206329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002980.2	-1	reviewed	p.L317I	0.841	234	0%	179	31.8%	-	-	benign(0.425)	tolerated(1)	neutral(0.138)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
PCDP1	200373	genome.wustl.edu	37	2	120385289	120385289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029996.3	+1	validated	p.F240S	0.037	86	0%	72	37.5%	-	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	NULL
EPB41L5	57669	genome.wustl.edu	37	2	120849184	120849184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020909.3	+1	validated	p.S366Y	1.000	155	0%	53	30.2%	-	-	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_FA,superfamily_PH domain-like
CLASP1	23332	genome.wustl.edu	37	2	122216504	122216504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015282.2	-1	validated	p.A409V	1.000	80	0%	28	46.4%	-	-	benign(0.121)	tolerated(0.21)	neutral(0.053)	superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122218767	122218767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015282.2	-1	validated	p.I314M	1.000	138	0%	38	44.7%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	superfamily_ARM repeat
CNTNAP5	129684	genome.wustl.edu	37	2	125261921	125261921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130773.2	+1	reviewed	p.V371A	0.999	184	0%	51	29.4%	-	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125262005	125262005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130773.2	+1	reviewed	p.N399I	1.000	122	0%	30	43.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP5	129684	genome.wustl.edu	37	2	125262009	125262009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130773.2	+1	reviewed	p.K400N	0.521	124	0%	31	29%	-	-	benign(0.008)	tolerated(0.14)	neutral(0.249)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
MAP3K2	10746	genome.wustl.edu	37	2	128079624	128079624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006609.3	-1	reviewed	p.R348H	1.000	159	0%	75	41.3%	-	-	possibly_damaging(0.836)	deleterious(0.02)	deleterious(0.703)	superfamily_Protein kinase-like (PK-like)
IWS1	55677	genome.wustl.edu	37	2	128238661	128238661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017969.2	-1	validated	p.A807T	1.000	221	0%	117	29.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_IWS1_C
GPR17	2840	genome.wustl.edu	37	2	128409020	128409020	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005291.2	+1	validated	p.I265	1.000	50	0%	107	33.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SAP130	79595	genome.wustl.edu	37	2	128774084	128774084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024545.3	-1	validated	p.A155D	1.000	169	0%	122	12.3%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128886725	128886725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020120.3	+1	validated	p.A450V	0.999	151	0%	101	37.6%	-	-	benign(0.028)	tolerated(0.1)	neutral(0.288)	NULL
POTEF	728378	genome.wustl.edu	37	2	130872495	130872495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099771.2	-1	validated	p.A257T	0.023	714	0.1%	421	25.2%	-	-	benign(0.011)	tolerated(0.4)	neutral(0.017)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CCDC115	84317	genome.wustl.edu	37	2	131098487	131098487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032357.2	-1	provisional	p.R142W	0.968	51	0%	81	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN18	26469	genome.wustl.edu	37	2	131128791	131128791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014369.3	+1	reviewed	p.D315V	0.001	117	0%	223	35.4%	-	-	benign(0.255)	tolerated(0.41)	neutral(0.041)	NULL
LOC653269	653269	genome.wustl.edu	37	2	131258127	131258127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_928585.2	-1	model	p.A300V	0.000	445	0%	136	21.3%	-	-	possibly_damaging(0.94)	deleterious(0.05)	deleterious(0.730)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LOC653781	653781	genome.wustl.edu	37	2	131377694	131377694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_929706.3	+1	model	p.A259V	0.013	313	0%	88	39.8%	-	-	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ARHGEF4	50649	genome.wustl.edu	37	2	131801890	131801890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015320.2	+1	reviewed	p.V540M	0.984	28	0%	46	34.8%	-	-	benign(0.058)	tolerated(0.28)	neutral(0.035)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
POTEE	445582	genome.wustl.edu	37	2	132021792	132021792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083538.1	+1	validated	p.D922Y	1.000	160	0%	123	12.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TUBA3D	113457	genome.wustl.edu	37	2	132238158	132238158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080386.2	+1	validated	p.P298A	1.000	173	0%	260	40.8%	-	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
CCDC74A	90557	genome.wustl.edu	37	2	132285757	132285757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138770.1	+1	provisional	p.H72N	1.000	36	0%	99	27.3%	-	-	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
ZNF806	646915	genome.wustl.edu	37	2	133076150	133076150	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001724242.2	+1	model	p.R537	0.999	261	0%	81	18.5%	-	-	-	-	-	superfamily_SSF57667
GPR39	2863	genome.wustl.edu	37	2	133174706	133174706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001508.2	+1	validated	p.I31V	1.000	102	0%	127	45.7%	-	-	benign(0.393)	tolerated(1)	neutral(0.126)	superfamily_Family A G protein-coupled receptor-like
MGAT5	4249	genome.wustl.edu	37	2	135012058	135012058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002410.3	+1	validated	p.M28I	1.000	171	0.6%	70	40%	-	-	possibly_damaging(0.891)	tolerated(0.18)	neutral(0.406)	NULL
TMEM163	81615	genome.wustl.edu	37	2	135470809	135470809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030923.4	-1	validated	p.S95P	1.000	133	0%	143	36.4%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ACMSD	130013	genome.wustl.edu	37	2	135596260	135596260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138326.2	+1	validated	p.I3S	1.000	153	0%	79	29.1%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
ACMSD	130013	genome.wustl.edu	37	2	135625230	135625230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138326.2	+1	validated	p.P190S	1.000	225	0%	199	43.2%	-	-	probably_damaging(0.958)	tolerated(0.23)	neutral(0.443)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
ACMSD	130013	genome.wustl.edu	37	2	135630104	135630104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138326.2	+1	validated	p.A248T	1.000	123	0%	51	33.3%	-	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
CCNT2	905	genome.wustl.edu	37	2	135712128	135712128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452521	+1	known	p.R120*	1.000	178	0%	65	47.7%	-	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135743795	135743795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025052.3	-1	validated	p.A883T	0.027	170	0%	96	16.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135888230	135888230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012233.2	+1	reviewed	p.R392Q	1.000	74	0%	41	26.8%	-	-	probably_damaging(0.986)	tolerated(0.19)	deleterious(0.484)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135893133	135893133	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012233.2	+1	reviewed	e17-1	1.000	68	0%	35	34.3%	-	-	-	-	-	-
R3HDM1	23518	genome.wustl.edu	37	2	136396597	136396597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015361.2	+1	provisional	p.A375V	1.000	59	0%	32	50%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
UBXN4	23190	genome.wustl.edu	37	2	136528282	136528282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014607.3	+1	validated	p.R267C	1.000	225	0%	148	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBXN4	23190	genome.wustl.edu	37	2	136537799	136537799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014607.3	+1	validated	p.I411S	0.995	244	0%	152	35.5%	-	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141143499	141143499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.Q3498H	0.996	213	0%	44	34.1%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141250225	141250225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.E3024D	0.984	271	0%	64	40.6%	-	-	probably_damaging(0.994)	tolerated(0.53)	neutral(0.460)	superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141299429	141299429	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.G2436*	1.000	155	0%	27	40.7%	-	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141609282	141609282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.R1550	0.993	84	0%	39	41%	-	-	-	-	-	HMMSmart_EGF,superfamily_SSF57196
LRP1B	53353	genome.wustl.edu	37	2	141707926	141707926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.S1005Y	1.000	60	0%	12	33.3%	-	-	possibly_damaging(0.437)	tolerated(0.07)	neutral(0.462)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141777512	141777512	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.I650S	1.000	107	0.9%	20	65%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141812767	141812767	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018557.2	-1	validated	p.C490	1.000	100	0%	18	38.9%	-	-	-	-	-	HMMSmart_EGF,superfamily_SSF57196
ZEB2	9839	genome.wustl.edu	37	2	145161532	145161532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014795.3	-1	reviewed	p.R253H	1.000	271	0%	110	39.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ORC4	5000	genome.wustl.edu	37	2	148710087	148710087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002552.2	-1	reviewed	p.R148Q	1.000	164	0%	46	32.6%	-	-	possibly_damaging(0.868)	tolerated(0.1)	deleterious(0.623)	HMMSmart_AAA,superfamily_SSF52540
MBD5	55777	genome.wustl.edu	37	2	149226353	149226353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018328.4	+1	reviewed	p.H281Y	1.000	55	0%	28	21.4%	-	-	unknown(0)	deleterious(0)	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149226936	149226936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018328.4	+1	reviewed	p.P475Q	1.000	93	0%	25	48%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF5C	3800	genome.wustl.edu	37	2	149798124	149798124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000435030	+1	known	p.V133I	1.000	230	0%	109	30.3%	-	-	benign(0.039)	tolerated(0.1)	neutral(0.288)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LYPD6B	130576	genome.wustl.edu	37	2	150061828	150061828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177964.3	+1	provisional	p.A47T	0.019	101	0%	30	36.7%	-	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
RBM43	375287	genome.wustl.edu	37	2	152108029	152108029	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198557.2	-1	validated	p.S155	0.845	132	0%	60	45%	-	-	-	-	-	NULL
NMI	9111	genome.wustl.edu	37	2	152132068	152132068	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004688.2	-1	reviewed	p.G188	0.029	96	0%	49	12.2%	-	-	-	-	-	HMMPfam_NID
NMI	9111	genome.wustl.edu	37	2	152132126	152132126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004688.2	-1	reviewed	p.R169H	0.989	96	0%	49	38.8%	-	-	benign(0.012)	tolerated(0.05)	neutral(0.346)	HMMPfam_NID
RIF1	55183	genome.wustl.edu	37	2	152311556	152311556	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000414861	+1	known	p.W822*	0.993	116	0%	54	33.3%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
RIF1	55183	genome.wustl.edu	37	2	152320361	152320361	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018151.4	+1	reviewed	p.R1443*	0.999	39	0%	17	58.8%	-	-	-	-	-	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152354867	152354867	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000509223	-1	known	e24-1	1.000	236	0%	59	16.9%	-	-	-	-	-	-
NEB	4703	genome.wustl.edu	37	2	152409995	152409995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004543.4	-1	reviewed	p.N4849D	1.000	195	0%	68	47.1%	-	-	benign(0.036)	tolerated(0.18)	neutral(0.058)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152482152	152482152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004543.4	-1	reviewed	p.R3207C	1.000	216	0%	70	38.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152497011	152497011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004543.4	-1	reviewed	p.D2848G	1.000	265	0%	107	44.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152520140	152520140	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004543.4	-1	reviewed	p.N1895	0.004	262	0%	81	27.2%	-	-	-	-	-	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152548668	152548668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004543.4	-1	reviewed	p.D671Y	1.000	286	0%	55	36.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CACNB4	785	genome.wustl.edu	37	2	152695728	152695728	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000726.3	-1	reviewed	p.E490*	1.000	217	0%	100	37%	-	-	-	-	-	NULL
GALNT13	114805	genome.wustl.edu	37	2	155102455	155102455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052917.2	+1	validated	p.E273*	1.000	123	0%	65	38.5%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
NR4A2	4929	genome.wustl.edu	37	2	157184501	157184501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000406048	-1	known	p.P122S	1.000	39	0%	81	14.8%	-	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PKP4	8502	genome.wustl.edu	37	2	159490675	159490675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003628.3	+1	reviewed	p.A479V	0.996	91	0%	59	33.9%	-	-	benign(0.023)	tolerated(0.11)	neutral(0.273)	NULL
TANC1	85461	genome.wustl.edu	37	2	160028664	160028664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033394.2	+1	validated	p.P462T	0.997	144	0%	65	40%	-	-	benign(0.124)	tolerated(0.07)	neutral(0.329)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160240121	160240121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013450.2	-1	validated	p.R1253C	1.000	287	0%	51	27.5%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160241758	160241758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013450.2	-1	validated	p.K1198N	1.000	125	0%	30	23.3%	-	-	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160245927	160245927	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013450.2	-1	validated	p.R1049*	1.000	441	0%	66	33.3%	-	-	-	-	-	NULL
CD302	9936	genome.wustl.edu	37	2	160639924	160639924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014880.4	-1	validated	p.E42*	0.971	198	0%	98	30.6%	-	-	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160714895	160714895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002349.2	-1	validated	p.E787D	1.000	151	0%	35	14.3%	-	-	benign(0.076)	deleterious(0.05)	neutral(0.351)	HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160755406	160755406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002349.2	-1	validated	p.D87N	0.036	101	0%	65	32.3%	-	-	benign(0.08)	tolerated(0.51)	neutral(0.014)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
PLA2R1	22925	genome.wustl.edu	37	2	160836369	160836369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007366.3	-1	validated	p.G747D	0.997	86	0%	32	18.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ITGB6	3694	genome.wustl.edu	37	2	160964272	160964272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000888.3	-1	provisional	p.I729S	1.000	134	0%	46	32.6%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
RBMS1	5937	genome.wustl.edu	37	2	161135122	161135122	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016836.3	-1	reviewed	p.P333	0.168	186	0%	91	26.4%	-	-	-	-	-	NULL
FAP	2191	genome.wustl.edu	37	2	163076434	163076434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004460.2	-1	reviewed	p.E139*	0.927	79	0%	32	37.5%	-	-	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
KCNH7	90134	genome.wustl.edu	37	2	163693243	163693243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033272.2	-1	reviewed	p.Q37H	1.000	79	0%	50	42%	-	-	possibly_damaging(0.876)	deleterious(0.03)	deleterious(0.706)	superfamily_PYP-like sensor domain (PAS domain)
COBLL1	22837	genome.wustl.edu	37	2	165551821	165551821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014900.3	-1	validated	p.K732T	0.984	283	0%	89	39.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165946840	165946840	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006922.3	-1	reviewed	p.K1941	1.000	243	0%	73	35.6%	-	-	-	-	-	NULL
SCN3A	6328	genome.wustl.edu	37	2	165969419	165969419	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006922.3	-1	reviewed	p.C1273	1.000	152	0%	42	31%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	166003416	166003416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006922.3	-1	reviewed	p.R502*	0.999	316	0.6%	83	12%	-	-	-	-	-	NULL
SCN2A	6326	genome.wustl.edu	37	2	166187925	166187925	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040142.1	+1	reviewed	p.W745*	1.000	262	0%	74	29.7%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166210776	166210776	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040142.1	+1	reviewed	p.N998	1.000	146	0%	84	40.5%	-	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
TTC21B	79809	genome.wustl.edu	37	2	166797565	166797565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024753.3	-1	validated	p.W228R	1.000	176	0%	55	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166900385	166900385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006920.4	-1	reviewed	p.R613*	0.951	166	0%	44	43.2%	-	-	-	-	-	NULL
SCN1A	6323	genome.wustl.edu	37	2	166908415	166908415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006920.4	-1	reviewed	p.V260I	1.000	161	0.6%	37	32.4%	-	-	possibly_damaging(0.882)	tolerated(0.4)	neutral(0.360)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166909378	166909378	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006920.4	-1	reviewed	p.T226	0.020	171	0%	47	42.6%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166911180	166911180	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006920.4	-1	reviewed	p.W190*	1.000	135	0%	25	36%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SPC25	57405	genome.wustl.edu	37	2	169745736	169745736	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020675.3	-1	reviewed	p.Q67*	1.000	164	0%	129	27.1%	-	-	-	-	-	NULL
SPC25	57405	genome.wustl.edu	37	2	169746021	169746021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020675.3	-1	reviewed	p.E3D	1.000	105	0%	88	10.2%	-	-	benign(0.017)	tolerated(0.16)	neutral(0.060)	NULL
LRP2	4036	genome.wustl.edu	37	2	169999224	169999224	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004525.2	-1	reviewed	p.G4356	0.965	113	0%	45	37.8%	-	-	-	-	-	HMMSmart_EGF
LRP2	4036	genome.wustl.edu	37	2	170065990	170065990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004525.2	-1	reviewed	p.R2148W	1.000	304	0%	85	37.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170097655	170097655	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004525.2	-1	reviewed	p.C1296	1.000	103	0%	50	14%	-	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
BBS5	129880	genome.wustl.edu	37	2	170349430	170349430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152384.2	+1	reviewed	p.A145T	1.000	124	0%	141	36.9%	-	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMPfam_DUF1448
PPIG	9360	genome.wustl.edu	37	2	170460747	170460747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004792.2	+1	validated	p.E38K	1.000	267	0%	191	32.5%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
C2orf77	129881	genome.wustl.edu	37	2	170506940	170506940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085447.1	-1	validated	p.D351Y	1.000	242	0%	123	43.1%	-	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
KLHL23	151230	genome.wustl.edu	37	2	170592597	170592597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144711.4	+1	validated	p.A358D	1.000	107	0%	170	35.3%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
UBR3	130507	genome.wustl.edu	37	2	170843230	170843230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172070.3	+1	validated	p.V1237A	1.000	158	0%	27	29.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GAD1	2571	genome.wustl.edu	37	2	171702556	171702556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000817.2	+1	reviewed	p.L329I	1.000	67	0%	21	23.8%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
SLC25A12	8604	genome.wustl.edu	37	2	172641978	172641978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003705.3	-1	reviewed	p.A615T	0.887	168	0%	90	31.1%	-	-	benign(0)	tolerated(0.96)	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175346661	175346661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033045.2	-1	validated	p.E8D	0.998	190	0%	170	38.2%	-	-	benign(0.074)	tolerated(0.09)	neutral(0.301)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175436667	175436667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077269.1	-1	reviewed	p.N289S	0.999	96	0%	106	36.8%	-	-	benign(0.011)	tolerated(0.93)	neutral(0.001)	NULL
CHRNA1	1134	genome.wustl.edu	37	2	175618426	175618426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039523.2	-1	reviewed	p.E220K	1.000	203	0%	140	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNA1	1134	genome.wustl.edu	37	2	175624260	175624260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039523.2	-1	reviewed	p.V49M	1.000	43	0%	31	29%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
KIAA1715	80856	genome.wustl.edu	37	2	176804298	176804298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030650.1	-1	validated	p.G265D	1.000	180	0%	52	42.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2296
KIAA1715	80856	genome.wustl.edu	37	2	176812264	176812264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030650.1	-1	validated	p.S217L	0.826	132	0%	42	35.7%	-	-	benign(0.03)	tolerated(0.12)	neutral(0.262)	NULL
EVX2	344191	genome.wustl.edu	37	2	176948110	176948110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080458.1	-1	reviewed	p.G132D	0.003	33	0%	100	35%	-	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
HOXD11	3237	genome.wustl.edu	37	2	176973681	176973681	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021192.2	+1	reviewed	p.Y276	1.000	65	0%	95	43.2%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HOXD10	3236	genome.wustl.edu	37	2	176981919	176981919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002148.3	+1	reviewed	p.R120C	1.000	86	0%	167	13.2%	-	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
HOXD3	3232	genome.wustl.edu	37	2	177036435	177036435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006898.4	+1	reviewed	p.N244	1.000	81	0%	112	37.5%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
TTC30A	92104	genome.wustl.edu	37	2	178482550	178482550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152275.3	-1	validated	p.A294T	1.000	68	0%	91	38.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF48452
RBM45	129831	genome.wustl.edu	37	2	178988970	178988970	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455903	+1	known	p.C56Y	0.980	44	0%	22	18.2%	-	-	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
OSBPL6	114880	genome.wustl.edu	37	2	179197373	179197373	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145739.1	+1	reviewed	p.Q105	1.000	86	0%	27	33.3%	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PRKRA	8575	genome.wustl.edu	37	2	179306381	179306381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003690.4	-1	reviewed	p.L189I	1.000	174	0%	118	40.7%	-	-	benign(0.039)	tolerated(0.54)	neutral(0.009)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
TTN	7273	genome.wustl.edu	37	2	179392403	179392403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.S33247L	1.000	145	0%	68	42.6%	-	-	benign(0.015)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179401681	179401681	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133378.4	-1	reviewed	p.S30817*	1.000	84	0%	17	29.4%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179424113	179424113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.Y26346H	1.000	102	0%	27	29.6%	-	-	probably_damaging(0.996)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179425162	179425162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.S25996Y	0.253	160	0%	46	23.9%	-	-	possibly_damaging(0.616)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179428661	179428661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.A24830T	1.000	63	0%	24	50%	-	-	possibly_damaging(0.925)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179429420	179429420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.V24577F	1.000	65	0%	25	48%	-	-	probably_damaging(0.998)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179429959	179429959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.V24397A	0.994	114	0%	34	38.2%	-	-	possibly_damaging(0.895)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179430001	179430001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.T24383M	1.000	142	0%	49	28.6%	-	-	probably_damaging(0.999)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179451434	179451434	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133378.4	-1	reviewed	p.S18830L	0.649	303	0%	84	38.1%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179454915	179454915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.E17943K	1.000	259	0%	46	28.3%	-	-	benign(0.099)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179456348	179456348	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133378.4	-1	reviewed	p.R17498Q	1.000	148	0.7%	32	50%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179458949	179458949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.D16821N	0.999	93	0%	21	38.1%	-	-	benign(0.29)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179468881	179468881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.R15610H	0.983	134	0%	59	44.1%	-	-	possibly_damaging(0.737)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179480041	179480041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.E13643K	1.000	176	0%	56	37.5%	-	-	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179498214	179498214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.A11723V	0.998	158	0%	39	43.6%	-	-	possibly_damaging(0.741)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179510669	179510669	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000426232	-1	known	p.G169*	0.999	354	0%	88	37.5%	-	-	unknown(0)	tolerated(0.17)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179528226	179528226	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000392423	-1	known	p.E458*	0.292	300	0.3%	63	28.6%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179535895	179535895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.P10443S	1.000	280	0%	65	40%	-	-	unknown(0)	tolerated(0.1)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179543488	179543488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.A10027D	1.000	128	0%	25	32%	-	-	unknown(0)	tolerated(0.58)	-	HMMPfam_PPAK
TTN	7273	genome.wustl.edu	37	2	179547995	179547995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.V9700I	0.349	382	0%	192	12.5%	-	-	unknown(0)	-	-	HMMPfam_PPAK
TTN	7273	genome.wustl.edu	37	2	179575437	179575437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.D8219Y	1.000	220	0%	63	23.8%	-	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179579178	179579178	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.E7531*	0.998	79	0%	29	13.8%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179593297	179593297	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.S5208	0.561	149	0%	40	37.5%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179596139	179596139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356127	-1	known	p.A4541V	1.000	149	0%	55	32.7%	-	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179634524	179634524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133379.3	-1	reviewed	p.K2928N	1.000	90	0%	38	42.1%	-	-	benign(0.099)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179641594	179641594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133379.3	-1	reviewed	p.T1666I	0.996	128	0%	27	29.6%	-	-	possibly_damaging(0.741)	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179702405	179702405	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173648.2	-1	provisional	p.L606	0.000	42	0%	21	57.1%	-	-	-	-	-	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180409604	180409604	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152520.4	-1	validated	p.F116V	1.000	130	0%	41	39%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
UBE2E3	10477	genome.wustl.edu	37	2	181925530	181925530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006357.2	+1	reviewed	p.C173G	1.000	146	0.7%	96	50%	-	-	possibly_damaging(0.848)	tolerated(0.47)	neutral(0.337)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
PDE1A	5136	genome.wustl.edu	37	2	183129093	183129093	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005019.3	-1	validated	p.V50	0.000	118	0%	35	25.7%	-	-	-	-	-	NULL
NCKAP1	10787	genome.wustl.edu	37	2	183846023	183846023	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205842.1	-1	validated	p.Y436	0.480	225	0%	47	34%	-	-	-	-	-	HMMPfam_Nckap1
NUP35	129401	genome.wustl.edu	37	2	183998336	183998336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138285.3	+1	reviewed	p.S128P	0.005	147	0%	44	29.5%	-	-	benign(0.013)	tolerated(0.12)	neutral(0.261)	NULL
NUP35	129401	genome.wustl.edu	37	2	184016240	184016240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138285.3	+1	reviewed	p.Q134H	1.000	89	0%	44	34.1%	-	-	benign(0.108)	tolerated(0.16)	neutral(0.068)	NULL
ITGAV	3685	genome.wustl.edu	37	2	187540403	187540403	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002210.3	+1	reviewed	p.L927	0.989	163	0%	51	39.2%	-	-	-	-	-	superfamily_Integrin domains
ZSWIM2	151112	genome.wustl.edu	37	2	187713816	187713816	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182521.2	-1	validated	p.H14	0.008	34	0%	26	50%	-	-	-	-	-	NULL
CALCRL	10203	genome.wustl.edu	37	2	188216956	188216956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005795.4	-1	validated	p.T338I	1.000	82	0%	46	21.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
CALCRL	10203	genome.wustl.edu	37	2	188225334	188225334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005795.4	-1	validated	p.L258I	1.000	132	0%	81	37%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_7tm_2
TFPI	7035	genome.wustl.edu	37	2	188332632	188332632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006287.4	-1	reviewed	p.T219I	0.001	164	0%	34	35.3%	-	-	benign(0.116)	tolerated(0.31)	neutral(0.036)	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,superfamily_BPTI-like
COL5A2	1290	genome.wustl.edu	37	2	189904232	189904232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000393.3	-1	reviewed	p.A1231S	1.000	53	0%	21	28.6%	-	-	possibly_damaging(0.86)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189962020	189962020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000393.3	-1	reviewed	p.G147W	1.000	158	0%	75	16%	-	-	unknown(0)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189974971	189974971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000393.3	-1	reviewed	p.G101V	0.935	87	0%	14	35.7%	-	-	probably_damaging(0.981)	-	-	NULL
HIBCH	26275	genome.wustl.edu	37	2	191109612	191109612	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014362.3	-1	reviewed	e11+1	1.000	123	0%	54	27.8%	-	-	-	-	-	-
MFSD6	54842	genome.wustl.edu	37	2	191300954	191300954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017694.3	+1	validated	p.D67N	1.000	122	0%	104	10.6%	-	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	superfamily_MFS_gen_substrate_transporter
MFSD6	54842	genome.wustl.edu	37	2	191301650	191301650	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017694.3	+1	validated	p.E299*	1.000	155	0%	172	34.9%	-	-	-	-	-	superfamily_MFS_gen_substrate_transporter
STAT1	6772	genome.wustl.edu	37	2	191847241	191847241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007315.3	-1	reviewed	p.L484	0.999	71	0%	42	33.3%	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
MYO1B	4430	genome.wustl.edu	37	2	192255118	192255118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130158.1	+1	validated	p.R628W	0.954	76	1.3%	61	37.7%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196682502	196682502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.L3115M	1.000	213	0%	88	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196723270	196723270	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.C2665	0.998	180	0%	49	32.7%	-	-	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196746611	196746611	+	Nonsense_Mutation	SNP	G	G	A	rs149212659		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.R1957*	0.998	232	0%	107	32.7%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196750870	196750870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.L1845I	1.000	163	0%	64	9.4%	-	-	benign(0.06)	tolerated(0.57)	neutral(0.010)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196771633	196771633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.R1402I	1.000	154	0%	52	28.8%	-	-	benign(0.008)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196825570	196825570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018897.2	-1	validated	p.L769F	1.000	104	0%	39	38.5%	-	-	possibly_damaging(0.69)	deleterious(0.03)	deleterious(0.611)	HMMPfam_DHC_N2
STK17B	9262	genome.wustl.edu	37	2	197004417	197004417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004226.3	-1	validated	p.S255P	1.000	128	0%	41	46.3%	-	-	probably_damaging(0.997)	tolerated(0.44)	deleterious(0.479)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HECW2	57520	genome.wustl.edu	37	2	197081791	197081791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.R1479W	1.000	217	0%	85	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197085626	197085626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.P1396T	1.000	374	0%	131	38.9%	-	-	probably_damaging(0.98)	tolerated(0.38)	neutral(0.442)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197135951	197135951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.R1101C	1.000	139	0%	40	37.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HECW2	57520	genome.wustl.edu	37	2	197143361	197143361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.R1009H	0.999	225	0%	107	14%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
HECW2	57520	genome.wustl.edu	37	2	197172797	197172797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.R816H	1.000	49	0%	30	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
HECW2	57520	genome.wustl.edu	37	2	197187308	197187308	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020760.1	-1	provisional	p.E260*	1.000	106	0%	54	31.5%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CCDC150	284992	genome.wustl.edu	37	2	197521488	197521488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080539.1	+1	provisional	p.R103Q	1.000	188	0%	55	30.9%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
C2orf66	401027	genome.wustl.edu	37	2	197673957	197673957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213608.1	-1	predicted	p.N52S	0.996	309	0%	124	13.7%	-	-	benign(0.313)	-	-	NULL
PGAP1	80055	genome.wustl.edu	37	2	197708766	197708766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024989.3	-1	validated	p.S791A	0.000	202	0%	81	35.8%	-	-	benign(0.016)	deleterious(0.05)	neutral(0.346)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197757078	197757078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024989.3	-1	validated	p.A361T	1.000	140	0%	93	41.9%	-	-	benign(0.026)	tolerated(0.3)	neutral(0.030)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197777693	197777693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024989.3	-1	validated	p.N188H	1.000	109	0%	59	32.2%	-	-	benign(0.018)	tolerated(0.13)	neutral(0.253)	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases
ANKRD44	91526	genome.wustl.edu	37	2	197878359	197878359	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153697.1	-1	provisional	p.G575	0.999	93	0%	81	27.2%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197953471	197953471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153697.1	-1	provisional	p.F379C	1.000	137	0%	51	29.4%	-	-	possibly_damaging(0.492)	tolerated(0.15)	neutral(0.405)	HMMPfam_Ank,HMMSmart_ANK
SF3B1	23451	genome.wustl.edu	37	2	198269871	198269871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012433.2	-1	reviewed	p.E490K	1.000	101	0%	37	37.8%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
COQ10B	80219	genome.wustl.edu	37	2	198338634	198338634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025147.3	+1	provisional	p.V235F	1.000	98	0%	65	38.5%	-	-	possibly_damaging(0.759)	deleterious(0.01)	deleterious(0.687)	NULL
RFTN2	130132	genome.wustl.edu	37	2	198498487	198498487	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144629.2	-1	validated	p.E225*	0.006	319	0%	154	30.5%	-	-	-	-	-	NULL
RFTN2	130132	genome.wustl.edu	37	2	198508985	198508985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144629.2	-1	validated	p.S112L	0.006	293	0%	188	29.3%	-	-	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
RFTN2	130132	genome.wustl.edu	37	2	198511303	198511303	+	Missense_Mutation	SNP	A	A	T	rs112492132		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144629.2	-1	validated	p.V76D	0.998	131	0%	78	32.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MARS2	92935	genome.wustl.edu	37	2	198571775	198571775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138395.2	+1	validated	p.G549V	0.007	68	0%	127	40.9%	-	-	benign(0.039)	tolerated(0.2)	neutral(0.051)	superfamily_tRNAsyn_1a_bind
BOLL	66037	genome.wustl.edu	37	2	198646541	198646541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_197970.2	-1	validated	p.P24S	1.000	291	0%	266	36.1%	-	-	benign(0.021)	tolerated(0.15)	neutral(0.242)	superfamily_SSF54928
PLCL1	5334	genome.wustl.edu	37	2	199011560	199011560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006226.3	+1	validated	p.Q956H	1.000	136	0%	27	59.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SATB2	23314	genome.wustl.edu	37	2	200136961	200136961	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015265.3	-1	reviewed	p.A725	0.000	125	0%	49	40.8%	-	-	-	-	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201305407	201305407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100422.1	+1	validated	p.R230C	1.000	118	0%	13	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1387
KCTD18	130535	genome.wustl.edu	37	2	201355189	201355189	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152387.2	-1	validated	p.T305	0.000	72	0%	82	43.9%	-	-	-	-	-	NULL
AOX1	316	genome.wustl.edu	37	2	201478555	201478555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001159.3	+1	reviewed	p.A493T	0.999	119	0%	28	28.6%	-	-	possibly_damaging(0.932)	deleterious(0.04)	deleterious(0.728)	HMMPfam_CO_deh_flav_C,superfamily_CO dehydrogenase flavoprotein C-terminal domain-like
NIF3L1	60491	genome.wustl.edu	37	2	201758040	201758040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136039.2	+1	validated	p.E170*	1.000	172	0%	113	34.5%	-	-	-	-	-	HMMPfam_NIF3,superfamily_NIF3 (NGG1p interacting factor 3)-like
CASP10	843	genome.wustl.edu	37	2	202073854	202073854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032977.3	+1	reviewed	p.T328	0.000	127	0%	55	43.6%	-	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_CASc,superfamily_SSF52129
CASP8	841	genome.wustl.edu	37	2	202137459	202137459	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444430	+1	known	p.P34S	0.997	162	0%	98	42.9%	-	-	-	-	-	HMMPfam_DED,superfamily_DEATH domain,HMMSmart_SM00115
ALS2CR11	151254	genome.wustl.edu	37	2	202356391	202356391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000439140	-1	known	p.R1558K	0.000	145	0%	78	34.6%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202400667	202400667	+	Missense_Mutation	SNP	T	T	C	rs189462996	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000450242	-1	known	p.N528S	0.001	192	0%	90	36.7%	-	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
TMEM237	65062	genome.wustl.edu	37	2	202492155	202492155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000448889	-1	known	p.F318L	0.666	109	0%	56	41.1%	-	-	-	-	-	NULL
ALS2	57679	genome.wustl.edu	37	2	202571708	202571708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020919.3	-1	reviewed	p.L1481M	1.000	78	0%	18	27.8%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_VPS9 domain (Pfam 02204)
ALS2	57679	genome.wustl.edu	37	2	202614512	202614512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020919.3	-1	reviewed	p.V580I	1.000	130	0%	48	35.4%	-	-	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	superfamily_RCC1/BLIP-II
ICA1L	130026	genome.wustl.edu	37	2	203682144	203682144	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138468.4	-1	validated	p.Y227	1.000	62	0%	34	14.7%	-	-	-	-	-	HMMPfam_Arfaptin
NBEAL1	65065	genome.wustl.edu	37	2	203972697	203972697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114132.1	+1	validated	p.V550M	1.000	84	0%	50	24%	-	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	204039938	204039938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114132.1	+1	validated	p.S2102Y	1.000	156	0%	45	48.9%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Beach,superfamily_BEACH domain
NBEAL1	65065	genome.wustl.edu	37	2	204045184	204045184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114132.1	+1	validated	p.E2153*	1.000	121	0%	20	30%	-	-	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
NBEAL1	65065	genome.wustl.edu	37	2	204081998	204081998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114132.1	+1	validated	p.R2669Q	1.000	114	0%	72	34.7%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_WD40 repeat-like
CYP20A1	57404	genome.wustl.edu	37	2	204154520	204154520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177538.2	+1	reviewed	p.R335Q	1.000	49	0%	20	55%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
ABI2	10152	genome.wustl.edu	37	2	204267369	204267369	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454023	+1	known	p.R148H	0.000	176	0%	97	33%	-	-	-	-	-	NULL
PARD3B	117583	genome.wustl.edu	37	2	206058027	206058027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152526.4	+1	validated	p.S646L	0.998	77	0%	24	62.5%	-	-	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207171372	207171372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020923.1	+1	validated	p.S707I	0.856	124	0%	38	34.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172168	207172168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020923.1	+1	validated	p.E972D	0.001	56	0%	16	37.5%	-	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172898	207172898	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020923.1	+1	validated	p.E1216*	0.002	75	0%	35	34.3%	-	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172934	207172934	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020923.1	+1	validated	p.E1228*	0.124	67	0%	24	37.5%	-	-	-	-	-	NULL
ADAM23	8745	genome.wustl.edu	37	2	207395613	207395613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003812.2	+1	reviewed	p.L172V	0.998	280	0%	85	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pep_M12B_propep
METTL21A	151194	genome.wustl.edu	37	2	208486635	208486635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127395.1	-1	validated	p.V52I	0.982	36	0%	65	36.9%	-	-	possibly_damaging(0.676)	tolerated(0.49)	neutral(0.251)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CRYGA	1418	genome.wustl.edu	37	2	209025779	209025779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014617.3	-1	validated	p.L92	0.964	51	0%	30	33.3%	-	-	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
PIKFYVE	200576	genome.wustl.edu	37	2	209177007	209177007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015040.3	+1	reviewed	p.A562T	1.000	182	0%	55	27.3%	-	-	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209190041	209190041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015040.3	+1	reviewed	p.G836C	1.000	105	0%	26	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209190564	209190564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015040.3	+1	reviewed	p.S1010I	0.998	82	0%	23	21.7%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209308075	209308075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005048.2	+1	reviewed	p.R171Q	1.000	112	0%	57	33.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_2,superfamily_SSF81321
MAP2	4133	genome.wustl.edu	37	2	210559274	210559274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002374.3	+1	reviewed	p.D794N	1.000	95	0%	22	36.4%	-	-	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210559516	210559516	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002374.3	+1	reviewed	p.K874	0.988	76	0%	20	40%	-	-	-	-	-	HMMPfam_MAP2_projctn
UNC80	285175	genome.wustl.edu	37	2	210858800	210858800	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032504.1	+1	validated	p.R3108*	1.000	44	0%	36	25%	-	-	-	-	-	NULL
RPE	6120	genome.wustl.edu	37	2	210881336	210881336	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199229.1	+1	provisional	p.Q150*	1.000	212	0%	95	33.7%	-	-	-	-	-	HMMPfam_Ribul_P_3_epim,PatternScan_RIBUL_P_3_EPIMER_2,superfamily_Ribulose-phoshate binding barrel
KANSL1L	151050	genome.wustl.edu	37	2	210940433	210940433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152519.2	-1	validated	p.L533R	1.000	213	0%	95	35.8%	-	-	possibly_damaging(0.461)	tolerated(0.18)	neutral(0.207)	NULL
LANCL1	10314	genome.wustl.edu	37	2	211305415	211305415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136574.1	-1	reviewed	p.F199L	0.670	173	0%	34	20.6%	-	-	benign(0)	tolerated(1)	-	HMMPfam_LANC_like
CPS1	1373	genome.wustl.edu	37	2	211454847	211454847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122633.1	+1	reviewed	p.H249Q	0.998	98	0%	18	33.3%	-	-	possibly_damaging(0.455)	tolerated(0.54)	neutral(0.157)	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
CPS1	1373	genome.wustl.edu	37	2	211460210	211460210	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122633.1	+1	reviewed	e14-1	1.000	213	0%	33	39.4%	-	-	-	-	-	-
IKZF2	22807	genome.wustl.edu	37	2	213878602	213878602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016260.2	-1	reviewed	p.L257M	1.000	213	0%	47	42.6%	-	-	benign(0.112)	tolerated(0.06)	neutral(0.332)	NULL
BARD1	580	genome.wustl.edu	37	2	215593652	215593652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000449967	-1	known	p.S549L	0.024	127	0%	43	39.5%	-	-	unknown(0)	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215865685	215865685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173076.2	-1	reviewed	p.V975I	0.000	128	0%	35	28.6%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215875146	215875146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173076.2	-1	reviewed	p.G794E	1.000	222	0%	88	31.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215875150	215875150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173076.2	-1	reviewed	p.A793T	0.997	214	0%	88	39.8%	-	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215880332	215880332	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173076.2	-1	reviewed	p.K613T	0.451	153	0.7%	76	34.2%	-	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
FN1	2335	genome.wustl.edu	37	2	216299424	216299424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_212482.1	-1	reviewed	p.P91H	1.000	207	0%	258	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00058,superfamily_Fibronectin type I module
XRCC5	7520	genome.wustl.edu	37	2	217054974	217054974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021141.3	+1	reviewed	p.E621K	0.945	220	0.5%	52	32.7%	-	-	benign(0.012)	tolerated(0.8)	neutral(0.001)	HMMPfam_Ku_PK_bind,superfamily_Ku_PK_bind
SMARCAL1	50485	genome.wustl.edu	37	2	217347522	217347522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127207.1	+1	reviewed	p.D896G	0.724	104	0%	59	37.3%	-	-	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	NULL
TNS1	7145	genome.wustl.edu	37	2	218678421	218678421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022648.4	-1	reviewed	p.Q1512H	1.000	178	0.6%	231	34.2%	-	-	benign(0.345)	tolerated(0.1)	neutral(0.395)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
C2orf62	375307	genome.wustl.edu	37	2	219232217	219232217	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198559.1	+1	predicted	p.L299	0.793	87	0%	151	32.5%	-	-	-	-	-	NULL
STK36	27148	genome.wustl.edu	37	2	219544331	219544331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015690.3	+1	validated	p.R276H	0.993	56	0%	45	40%	-	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	superfamily_Protein kinase-like (PK-like)
STK36	27148	genome.wustl.edu	37	2	219561852	219561852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015690.3	+1	validated	p.E893K	0.000	78	0%	88	34.1%	-	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	superfamily_ARM repeat
TTLL4	9654	genome.wustl.edu	37	2	219610493	219610493	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000417196	+1	known	p.P66L	1.000	47	0%	34	20.6%	-	-	-	-	-	NULL
TTLL4	9654	genome.wustl.edu	37	2	219616455	219616455	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014640.4	+1	validated	p.R968*	0.004	81	0%	54	13%	-	-	-	-	-	NULL
TTLL4	9654	genome.wustl.edu	37	2	219617583	219617583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014640.4	+1	validated	p.R1025Q	1.000	356	0.3%	194	41.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PRKAG3	53632	genome.wustl.edu	37	2	219696465	219696465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017431.2	-1	reviewed	p.R10H	0.000	20	0%	27	44.4%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
ZFAND2B	130617	genome.wustl.edu	37	2	220074000	220074000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138802.1	+1	provisional	p.S249L	0.999	102	0%	213	16.4%	-	-	-	-	-	NULL
ATG9A	79065	genome.wustl.edu	37	2	220087552	220087552	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077198.1	-1	validated	p.L555	0.996	85	0%	163	14.7%	-	-	-	-	-	NULL
ATG9A	79065	genome.wustl.edu	37	2	220089807	220089807	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077198.1	-1	validated	p.L168	1.000	99	0%	155	39.4%	-	-	-	-	-	NULL
TUBA4A	7277	genome.wustl.edu	37	2	220116431	220116431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006000.1	-1	reviewed	p.E77D	1.000	133	0%	216	37%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
RESP18	389075	genome.wustl.edu	37	2	220197280	220197280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007089.3	-1	validated	p.S66R	0.178	14	0%	18	44.4%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
LOC100288941	100288941	genome.wustl.edu	37	2	220286163	220286163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342291.1	-1	model	p.P54S	0.998	68	0%	65	41.5%	-	-	-	-	-	NULL
SPEG	10290	genome.wustl.edu	37	2	220354534	220354534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005876.4	+1	validated	p.L2932I	0.051	21	0%	47	40.4%	-	-	possibly_damaging(0.653)	tolerated(0.11)	deleterious(0.501)	NULL
ASIC4	55515	genome.wustl.edu	37	2	220379586	220379586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018674.4	+1	reviewed	p.S174I	1.000	15	0%	30	36.7%	-	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_ASC
ASIC4	55515	genome.wustl.edu	37	2	220379949	220379949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018674.4	+1	reviewed	p.R295H	1.000	37	0%	73	32.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ASC
CHPF	79586	genome.wustl.edu	37	2	220405789	220405789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024536.5	-1	validated	p.P316L	0.966	51	0%	104	45.2%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_CHGN
TMEM198	130612	genome.wustl.edu	37	2	220412668	220412668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005209.1	+1	provisional	p.E203K	0.994	9	0.000	30	0.367	-	-	possibly_damaging(0.915)	tolerated(0.27)	neutral(0.400)	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220493885	220493885	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201574.2	+1	validated	p.H79	1.000	22	0%	47	44.7%	-	-	-	-	-	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220496703	220496703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201574.2	+1	validated	p.E302D	1.000	27	0%	55	23.6%	-	-	possibly_damaging(0.942)	tolerated(0.27)	neutral(0.420)	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220501536	220501536	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201574.2	+1	validated	p.E852	1.000	147	0%	200	37.5%	-	-	-	-	-	HMMPfam_HCO3_cotransp
EPHA4	2043	genome.wustl.edu	37	2	222294797	222294797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004438.3	-1	reviewed	p.M857I	1.000	124	0%	42	21.4%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
WDFY1	57590	genome.wustl.edu	37	2	224765929	224765929	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020830.3	-1	reviewed	p.H152	0.997	54	0%	34	35.3%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SERPINE2	5270	genome.wustl.edu	37	2	224849664	224849664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136530.1	-1	validated	p.S242L	0.987	141	0%	50	24%	-	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CUL3	8452	genome.wustl.edu	37	2	225376109	225376109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003590.3	-1	validated	p.S282Y	1.000	272	0%	132	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL3	8452	genome.wustl.edu	37	2	225422549	225422549	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003590.3	-1	validated	p.N31H	1.000	147	0%	73	53.4%	-	-	possibly_damaging(0.695)	deleterious(0.04)	deleterious(0.598)	superfamily_Cullin repeat
DOCK10	55619	genome.wustl.edu	37	2	225639637	225639637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014689.2	-1	validated	p.R2000W	0.030	69	0%	41	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
DOCK10	55619	genome.wustl.edu	37	2	225670026	225670026	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409802	-1	known	p.L42I	0.556	182	0%	32	53.1%	-	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225704714	225704714	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014689.2	-1	validated	p.L913	1.000	204	0%	78	38.5%	-	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225751199	225751199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014689.2	-1	validated	p.H156N	1.000	186	0%	49	42.9%	-	-	benign(0.002)	tolerated(0.31)	neutral(0.027)	NULL
IRS1	3667	genome.wustl.edu	37	2	227661129	227661129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005544.2	-1	reviewed	p.R776C	1.000	24	0%	40	40%	-	-	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	NULL
IRS1	3667	genome.wustl.edu	37	2	227661675	227661675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005544.2	-1	reviewed	p.R594C	0.754	40	0%	83	31.3%	-	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
IRS1	3667	genome.wustl.edu	37	2	227662323	227662323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005544.2	-1	reviewed	p.P378S	1.000	16	0%	47	25.5%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
COL4A4	1286	genome.wustl.edu	37	2	227920685	227920685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000092.4	-1	reviewed	p.L898I	0.000	35	0%	21	19%	-	-	unknown(0)	tolerated(0.36)	-	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227927272	227927272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000092.4	-1	reviewed	p.G677D	0.987	45	0%	48	37.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227985769	227985769	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000092.4	-1	reviewed	p.D96	0.954	100	0%	58	24.1%	-	-	-	-	-	HMMPfam_Collagen
MFF	56947	genome.wustl.edu	37	2	228205093	228205093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020194.4	+1	provisional	p.S172Y	1.000	98	0%	46	50%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF800
AGFG1	3267	genome.wustl.edu	37	2	228389532	228389532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135187.1	+1	reviewed	p.L199I	1.000	163	0.6%	40	37.5%	-	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
PID1	55022	genome.wustl.edu	37	2	229890461	229890461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017933.4	-1	validated	p.A212T	1.000	90	0%	44	38.6%	-	-	benign(0.075)	tolerated(1)	neutral(0.005)	superfamily_SSF50729
TRIP12	9320	genome.wustl.edu	37	2	230632424	230632424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004238.1	-1	provisional	p.T1942M	1.000	159	0%	89	34.8%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
FBXO36	130888	genome.wustl.edu	37	2	230875459	230875459	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174899.4	+1	validated	p.C142	0.095	41	0%	32	12.5%	-	-	-	-	-	superfamily_F-box domain
SLC16A14	151473	genome.wustl.edu	37	2	230911251	230911251	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152527.4	-1	validated	p.A197	0.712	25	0%	29	55.2%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SP140L	93349	genome.wustl.edu	37	2	231248287	231248287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138402.4	+1	provisional	p.N234Y	0.003	307	0%	114	33.3%	-	-	possibly_damaging(0.801)	deleterious(0.03)	deleterious(0.666)	NULL
SP100	6672	genome.wustl.edu	37	2	231333758	231333758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080391.1	+1	validated	p.A431D	0.073	193	0%	44	27.3%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
ARMC9	80210	genome.wustl.edu	37	2	232081495	232081495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025139.3	+1	validated	p.E165K	0.996	161	0%	95	33.7%	-	-	possibly_damaging(0.736)	tolerated(0.17)	neutral(0.328)	superfamily_ARM-type_fold
NPPC	4880	genome.wustl.edu	37	2	232790340	232790340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024409.1	-1	provisional	p.G59D	0.904	4	0.000	13	0.308	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_ANP
ALPP	250	genome.wustl.edu	37	2	233245445	233245445	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001632.3	+1	reviewed	p.R326	0.132	105	0%	241	14.1%	-	-	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
CHRNG	1146	genome.wustl.edu	37	2	233406159	233406159	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005199.4	+1	reviewed	p.P142	0.214	141	0%	260	11.9%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GIGYF2	26058	genome.wustl.edu	37	2	233708855	233708855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103147.1	+1	reviewed	p.G1018C	0.649	85	0%	67	35.8%	-	-	unknown(0)	deleterious(0.04)	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233709078	233709078	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103147.1	+1	reviewed	e24-1	1.000	87	0%	86	32.6%	-	-	-	-	-	-
NGEF	25791	genome.wustl.edu	37	2	233757651	233757651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019850.2	-1	validated	p.V367I	1.000	96	0%	147	48.3%	-	-	benign(0.325)	tolerated(0.06)	neutral(0.424)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NEU2	4759	genome.wustl.edu	37	2	233899109	233899109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005383.2	+1	reviewed	p.G162E	0.998	44	0%	79	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Sialidase
NEU2	4759	genome.wustl.edu	37	2	233899476	233899476	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005383.2	+1	reviewed	p.S284	0.000	14	0%	24	41.7%	-	-	-	-	-	superfamily_Sialidase
INPP5D	3635	genome.wustl.edu	37	2	234079786	234079786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000359570	+1	known	p.Q659H	1.000	70	0%	69	34.8%	-	-	possibly_damaging(0.819)	tolerated(0.07)	deleterious(0.629)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
ATG16L1	55054	genome.wustl.edu	37	2	234198559	234198559	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030803.6	+1	validated	p.A421	0.822	90	0%	65	21.5%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SAG	6295	genome.wustl.edu	37	2	234227502	234227502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000415974	+1	known	p.G81D	0.000	273	0%	263	39.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
DGKD	8527	genome.wustl.edu	37	2	234296935	234296935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152879.2	+1	reviewed	p.Q63H	1.000	80	0%	88	37.5%	-	-	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
DGKD	8527	genome.wustl.edu	37	2	234299111	234299111	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152879.2	+1	reviewed	p.N110	0.988	257	0%	209	43.1%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
USP40	55230	genome.wustl.edu	37	2	234431847	234431847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018218.2	-1	validated	p.I735V	0.000	72	0%	43	46.5%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
USP40	55230	genome.wustl.edu	37	2	234463057	234463057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018218.2	-1	validated	p.G233E	0.986	171	0%	46	30.4%	-	-	benign(0.04)	tolerated(0.6)	neutral(0.007)	HMMPfam_UCH,superfamily_Cysteine proteinases
UGT1A10	54575	genome.wustl.edu	37	2	234545224	234545224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019075.2	+1	reviewed	p.T19I	0.000	156	0%	55	32.7%	-	-	possibly_damaging(0.817)	tolerated(0.47)	neutral(0.320)	NULL
UGT1A5	54579	genome.wustl.edu	37	2	234621853	234621853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019078.1	+1	reviewed	p.E72D	0.000	141	0%	93	31.2%	-	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A4	54657	genome.wustl.edu	37	2	234627959	234627959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007120.2	+1	reviewed	p.L165M	0.384	256	0%	297	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A3	54659	genome.wustl.edu	37	2	234637889	234637889	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019093.2	+1	reviewed	p.S39	1.000	83	0%	99	32.3%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
DNAJB3	414061	genome.wustl.edu	37	2	234652363	234652363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001394.3	-1	validated	p.R67H	1.000	23	0%	39	28.2%	-	-	-	-	-	superfamily_DnaJ_N
TRPM8	79054	genome.wustl.edu	37	2	234835300	234835300	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024080.4	+1	validated	e1+1	0.933	87	0%	66	34.8%	-	-	-	-	-	-
TRPM8	79054	genome.wustl.edu	37	2	234858646	234858646	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024080.4	+1	validated	p.S332	0.370	101	0%	52	38.5%	-	-	-	-	-	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235950763	235950763	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014521.2	+1	reviewed	p.Y450	1.000	27	0%	33	21.2%	-	-	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236649606	236649606	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037131.1	+1	validated	e4-1	1.000	218	0%	270	38.5%	-	-	-	-	-	-
GBX2	2637	genome.wustl.edu	37	2	237074751	237074751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001485.2	-1	validated	p.K285E	1.000	85	0%	146	35.6%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
GBX2	2637	genome.wustl.edu	37	2	237075043	237075043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001485.2	-1	validated	p.K187N	1.000	24	0%	50	28%	-	-	unknown(0)	deleterious(0)	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237276915	237276915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024726.3	-1	provisional	p.R531C	0.995	54	0%	80	37.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCA1	79781	genome.wustl.edu	37	2	237374286	237374286	+	Missense_Mutation	SNP	C	C	T	rs147583253	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024726.3	-1	provisional	p.R263Q	0.038	195	0%	93	32.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238242185	238242185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004369.3	-1	reviewed	p.S3079Y	0.008	156	0.6%	78	15.4%	-	-	unknown(0)	-	-	NULL
COL6A3	1293	genome.wustl.edu	37	2	238280717	238280717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004369.3	-1	reviewed	p.A1315T	1.000	19	0%	28	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303654	238303654	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004369.3	-1	reviewed	p.T95	0.440	107	0%	37	29.7%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ENSG00000222449	0	genome.wustl.edu	37	2	238471810	238471810	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000410517	+1	novel	NULL	0.000	18	0%	42	35.7%	-	-	-	-	-	-
ESPNL	339768	genome.wustl.edu	37	2	239036311	239036311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194312.2	+1	validated	p.P384H	0.004	36	0%	61	44.3%	-	-	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
KLHL30	377007	genome.wustl.edu	37	2	239054405	239054405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198582.3	+1	validated	p.A343V	1.000	16	0%	49	30.6%	-	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL30	377007	genome.wustl.edu	37	2	239056477	239056477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198582.3	+1	validated	p.T367A	1.000	17	0%	48	50%	-	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ILKAP	80895	genome.wustl.edu	37	2	239082246	239082246	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030768.2	-1	reviewed	p.D295	0.264	56	0%	58	39.7%	-	-	-	-	-	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
PER2	8864	genome.wustl.edu	37	2	239159251	239159251	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022817.2	-1	reviewed	p.I1136	1.000	222	0%	305	34.8%	-	-	-	-	-	NULL
PER2	8864	genome.wustl.edu	37	2	239179955	239179955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022817.2	-1	reviewed	p.A257V	0.358	56	0%	64	32.8%	-	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
TRAF3IP1	26146	genome.wustl.edu	37	2	239237868	239237868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015650.3	+1	validated	p.R267Q	0.000	233	0%	302	37.4%	-	-	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMPfam_MIP-T3
HDAC4	9759	genome.wustl.edu	37	2	240002874	240002874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006037.3	-1	reviewed	p.P884	0.673	11	0%	47	42.6%	-	-	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
HDAC4	9759	genome.wustl.edu	37	2	240056275	240056275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006037.3	-1	reviewed	p.S348L	0.997	76	0%	114	30.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FLJ45964	401040	genome.wustl.edu	37	2	240500088	240500088	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_041563.1	+1	model	NULL	0.279	32	0%	60	33.3%	-	-	-	-	-	-
ENSG00000196758	0	genome.wustl.edu	37	2	240500245	240500245	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000358775	+1	known	p.R42	0.001	44	0%	78	56.4%	-	-	-	-	-	NULL
OR6B3	150681	genome.wustl.edu	37	2	240985208	240985208	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173351.1	-1	provisional	p.F94	0.006	169	0%	144	30.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MYEOV2	150678	genome.wustl.edu	37	2	241069328	241069328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138336.1	-1	validated	p.E127D	0.001	33	0%	40	45%	-	-	unknown(0)	-	-	NULL
GPR35	2859	genome.wustl.edu	37	2	241570173	241570173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005301.2	+1	provisional	p.N268K	1.000	29	0%	67	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
KIF1A	547	genome.wustl.edu	37	2	241725902	241725902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004321.4	-1	reviewed	p.R153H	1.000	67	0%	141	32.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNED1	25992	genome.wustl.edu	37	2	242008377	242008377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080437.1	+1	provisional	p.G1082	0.798	8	0.000	22	0.318	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MTERFD2	130916	genome.wustl.edu	37	2	242039227	242039227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182501.3	-1	validated	p.T35M	0.000	31	0%	40	50%	-	-	benign(0.155)	tolerated(0.47)	neutral(0.025)	HMMPfam_mTERF
PASK	23178	genome.wustl.edu	37	2	242047601	242047601	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015148.2	-1	validated	p.P1216	0.986	55	0%	84	32.1%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PASK	23178	genome.wustl.edu	37	2	242065921	242065921	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015148.2	-1	validated	p.T803	0.111	76	1.3%	92	39.1%	-	-	-	-	-	NULL
LOC100289155	100289155	genome.wustl.edu	37	2	242089780	242089780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342315.1	-1	model	p.P85T	0.010	7	0.000	13	0.308	-	-	-	-	-	NULL
PPP1R7	5510	genome.wustl.edu	37	2	242122128	242122128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002712.1	+1	provisional	p.T325A	1.000	127	0%	182	33%	-	-	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	NULL
ANO7	50636	genome.wustl.edu	37	2	242139611	242139611	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001891.3	+1	validated	p.S229	1.000	18	0%	34	29.4%	-	-	-	-	-	NULL
HDLBP	3069	genome.wustl.edu	37	2	242170210	242170210	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005336.3	-1	validated	p.R1146	0.002	85	0%	170	34.1%	-	-	-	-	-	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
HDLBP	3069	genome.wustl.edu	37	2	242179346	242179346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000373292	-1	known	p.E596*	0.781	123	0%	146	28.8%	-	-	benign(0.149)	deleterious(0.01)	neutral(0.419)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FARP2	9855	genome.wustl.edu	37	2	242402028	242402028	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014808.2	+1	validated	e14+1	1.000	54	0%	94	27.7%	-	-	-	-	-	-
FARP2	9855	genome.wustl.edu	37	2	242402855	242402855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014808.2	+1	validated	p.R595C	0.984	55	0%	85	37.6%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FARP2	9855	genome.wustl.edu	37	2	242433512	242433512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014808.2	+1	validated	p.E1046G	0.007	13	7.7%	18	33.3%	-	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
D2HGDH	728294	genome.wustl.edu	37	2	242680475	242680475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152783.3	+1	reviewed	p.R107Q	0.602	36	0%	67	34.3%	-	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_FAD_binding_4,superfamily_FAD-binding domain
D2HGDH	728294	genome.wustl.edu	37	2	242694718	242694718	+	Missense_Mutation	SNP	C	C	T	rs184924693	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000445308	+1	known	p.P77L	0.005	5	0.000	17	0.647	-	-	unknown(0)	-	-	NULL
NEU4	129807	genome.wustl.edu	37	2	242758075	242758075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080741.2	+1	reviewed	p.R398C	0.220	5	0.000	15	0.467	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Sialidase
CXXC11	285093	genome.wustl.edu	37	2	242814972	242814972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173821.2	+1	validated	p.A422V	0.000	24	0%	37	32.4%	-	-	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	NULL
CXXC11	285093	genome.wustl.edu	37	2	242815246	242815246	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173821.2	+1	validated	p.R513	0.002	30	0%	64	37.5%	-	-	-	-	-	NULL
CHL1	10752	genome.wustl.edu	37	3	391208	391208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006614.2	+1	reviewed	p.F339V	0.999	64	0%	22	50%	-	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	404984	404984	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006614.2	+1	reviewed	p.T501	0.309	173	0%	55	36.4%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	405001	405001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006614.2	+1	reviewed	p.S507Y	0.039	173	0%	57	38.6%	-	-	possibly_damaging(0.631)	deleterious(0.03)	deleterious(0.585)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	423871	423872	+	In_Frame_Ins	INS	-	-	TCC	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006614.2	+1	reviewed	p.632in_frame_insP	1.000:0.997	-	-	-	-	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
CHL1	10752	genome.wustl.edu	37	3	440699	440699	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006614.2	+1	reviewed	e24-1	0.995	278	0.4%	80	26.3%	-	-	-	-	-	-
CNTN6	27255	genome.wustl.edu	37	3	1415342	1415342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014461.2	+1	reviewed	p.S614Y	0.808	75	0%	18	50%	-	-	benign(0.296)	deleterious(0)	deleterious(0.536)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN4	152330	genome.wustl.edu	37	3	2787375	2787375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175607.1	+1	reviewed	p.F118V	1.000	133	0%	49	42.9%	-	-	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00409,HMMPfam_I-set
SUMF1	285362	genome.wustl.edu	37	3	4491009	4491009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182760.3	-1	reviewed	p.D154N	0.999	82	0%	54	31.5%	-	-	possibly_damaging(0.592)	tolerated(0.14)	neutral(0.454)	HMMPfam_DUF323
ITPR1	3708	genome.wustl.edu	37	3	4818994	4818994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099952.2	+1	reviewed	p.A2028V	1.000	166	0.6%	55	25.5%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_RIH_assoc
ITPR1	3708	genome.wustl.edu	37	3	4856144	4856144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099952.2	+1	reviewed	p.E2485D	1.000	98	0%	96	42.7%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Ion_trans
ARL8B	55207	genome.wustl.edu	37	3	5220412	5220412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000419534	+1	known	p.V146I	0.863	219	0%	166	38%	-	-	unknown(0)	tolerated(1)	-	HMMPfam_Arf
LMCD1	29995	genome.wustl.edu	37	3	8579067	8579067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014583.2	+1	reviewed	p.D110Y	1.000	59	0%	39	46.2%	-	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_PET
SETD5	55209	genome.wustl.edu	37	3	9488937	9488937	+	Silent	SNP	C	C	A	rs191615401	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000399686	+1	known	p.P244T	0.095	30	0%	16	25%	-	-	-	-	-	NULL
LHFPL4	375323	genome.wustl.edu	37	3	9594358	9594358	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198560.2	-1	reviewed	p.L2	1.000	8	0.000	30	0.267	-	-	-	-	-	NULL
MTMR14	64419	genome.wustl.edu	37	3	9726900	9726900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077525.2	+1	reviewed	p.M378R	1.000	262	0%	232	38.4%	-	-	possibly_damaging(0.925)	tolerated(0.27)	neutral(0.407)	superfamily_(Phosphotyrosine protein) phosphatases II
BRPF1	7862	genome.wustl.edu	37	3	9775987	9775987	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003694.1	+1	reviewed	p.Q55*	1.000	245	0%	402	30.8%	-	-	-	-	-	NULL
FANCD2	2177	genome.wustl.edu	37	3	10138023	10138023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033084.3	+1	reviewed	p.T1351M	0.006	126	0%	55	30.9%	-	-	possibly_damaging(0.522)	tolerated(0.1)	neutral(0.462)	NULL
SLC6A11	6538	genome.wustl.edu	37	3	10858058	10858058	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014229.1	+1	provisional	p.A36	0.874	14	0%	21	23.8%	-	-	-	-	-	NULL
SLC6A1	6529	genome.wustl.edu	37	3	11076362	11076362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003042.3	+1	validated	p.T558I	1.000	78	0%	93	36.6%	-	-	possibly_damaging(0.92)	tolerated(0.18)	neutral(0.427)	HMMPfam_SNF
HRH1	3269	genome.wustl.edu	37	3	11301037	11301037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000861.3	+1	reviewed	p.S105Y	0.970	114	0%	93	35.5%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HRH1	3269	genome.wustl.edu	37	3	11301577	11301577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000861.3	+1	reviewed	p.S285Y	0.000	78	0%	57	35.1%	-	-	possibly_damaging(0.834)	deleterious(0.02)	deleterious(0.701)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MKRN2	23609	genome.wustl.edu	37	3	12613701	12613701	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014160.3	+1	provisional	p.D157	0.000	73	0%	58	32.8%	-	-	-	-	-	NULL
RAF1	5894	genome.wustl.edu	37	3	12626680	12626680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002880.3	-1	reviewed	p.V537I	1.000	56	0%	42	14.3%	-	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAND2	23066	genome.wustl.edu	37	3	12859014	12859014	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012298.2	+1	validated	p.E768	1.000	35	0%	62	43.5%	-	-	-	-	-	HMMPfam_HEAT,superfamily_ARM-type_fold
RPL32	6161	genome.wustl.edu	37	3	12880925	12880925	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000994.3	-1	reviewed	p.K67	1.000	107	0%	102	35.3%	-	-	-	-	-	HMMPfam_Ribosomal_L32e,superfamily_Ribosomal protein L32e
IQSEC1	9922	genome.wustl.edu	37	3	12950834	12950834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014869.4	-1	validated	p.F853L	1.000	170	0%	219	37%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00233,superfamily_PH domain-like
IQSEC1	9922	genome.wustl.edu	37	3	12983224	12983224	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000450726	-1	known	p.L70F	0.994	6	0.000	29	0.241	-	-	-	-	-	NULL
HDAC11	79885	genome.wustl.edu	37	3	13544469	13544469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024827.3	+1	reviewed	p.R213H	1.000	40	0%	81	13.6%	-	-	benign(0.001)	tolerated(0.79)	neutral(0.001)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
WNT7A	7476	genome.wustl.edu	37	3	13916571	13916571	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004625.3	-1	reviewed	p.D57	1.000	18	0%	38	44.7%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
TPRXL	348825	genome.wustl.edu	37	3	14105685	14105685	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000326972	+1	known	p.H3	0.000	19	0%	16	37.5%	-	-	-	-	-	NULL
XPC	7508	genome.wustl.edu	37	3	14209786	14209786	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004628.4	-1	reviewed	p.T169	0.455	61	0%	44	38.6%	-	-	-	-	-	NULL
GRIP2	80852	genome.wustl.edu	37	3	14567392	14567392	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080423.1	-1	provisional	p.D126	0.000	22	0%	26	30.8%	-	-	-	-	-	NULL
C3orf20	84077	genome.wustl.edu	37	3	14768418	14768418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032137.4	+1	validated	p.R526I	0.001	84	0%	43	34.9%	-	-	possibly_damaging(0.528)	deleterious(0.01)	deleterious(0.584)	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15137576	15137576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022340.2	-1	validated	p.L18M	0.992	163	0%	153	35.3%	-	-	possibly_damaging(0.698)	deleterious(0.04)	deleterious(0.600)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CAPN7	23473	genome.wustl.edu	37	3	15292515	15292515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014296.2	+1	reviewed	p.S761Y	0.431	257	0%	97	35.1%	-	-	possibly_damaging(0.831)	deleterious(0)	deleterious(0.760)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
METTL6	131965	genome.wustl.edu	37	3	15455585	15455585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152396.2	-1	validated	p.L206I	1.000	166	0%	71	29.6%	-	-	benign(0.253)	tolerated(0.51)	neutral(0.035)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
BTD	686	genome.wustl.edu	37	3	15686416	15686416	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000060.2	+1	reviewed	p.T351	0.000	29	0%	31	16.1%	-	-	-	-	-	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17349616	17349616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134381.1	-1	validated	p.R336W	0.992	59	0%	18	44.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
SATB1	6304	genome.wustl.edu	37	3	18436062	18436062	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001131010.1	-1	validated	p.S366	0.673	197	0%	55	38.2%	-	-	-	-	-	HMMPfam_CUT
KCNH8	131096	genome.wustl.edu	37	3	19575320	19575320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144633.2	+1	reviewed	p.S1018Y	0.644	205	0%	60	40%	-	-	benign(0.057)	deleterious(0)	neutral(0.448)	NULL
EFHB	151651	genome.wustl.edu	37	3	19975304	19975304	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144715.3	-1	validated	p.G69	0.024	129	0%	62	24.2%	-	-	-	-	-	NULL
SGOL1	151648	genome.wustl.edu	37	3	20212260	20212260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012410.2	-1	provisional	p.S507Y	1.000	166	0%	35	42.9%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
SGOL1	151648	genome.wustl.edu	37	3	20216495	20216495	+	Splice_Site	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012412.2	-1	provisional	e5+2	0.148	104	0%	52	30.8%	-	-	-	-	-	-
THRB	7068	genome.wustl.edu	37	3	24169121	24169121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000461.4	-1	reviewed	p.R338Q	1.000	83	0%	39	48.7%	-	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
THRB	7068	genome.wustl.edu	37	3	24185144	24185144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000461.4	-1	reviewed	p.R196W	1.000	160	0%	36	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
THRB	7068	genome.wustl.edu	37	3	24231770	24231770	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000461.4	-1	reviewed	p.D26	0.939	241	0%	44	40.9%	-	-	unknown(0)	-	-	NULL
TOP2B	7155	genome.wustl.edu	37	3	25666223	25666223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001068.2	-1	reviewed	p.A761T	1.000	122	0%	34	32.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen
TOP2B	7155	genome.wustl.edu	37	3	25674003	25674003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001068.2	-1	reviewed	p.E395D	1.000	87	0%	28	28.6%	-	-	possibly_damaging(0.728)	deleterious(0.02)	deleterious(0.648)	HMMSmart_TOP2c,HMMPfam_DNA_gyraseB,superfamily_Ribosomal_S5_D2-typ_fold
TOP2B	7155	genome.wustl.edu	37	3	25686790	25686790	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001068.2	-1	reviewed	e2+1	1.000	186	0%	68	38.2%	-	-	-	-	-	-
NGLY1	55768	genome.wustl.edu	37	3	25770719	25770719	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018297.3	-1	reviewed	p.R506*	0.999	168	0%	43	30.2%	-	-	-	-	-	HMMSmart_SM00613
NEK10	152110	genome.wustl.edu	37	3	27216180	27216180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000396636	-1	known	p.L884M	0.841	61	0%	41	36.6%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
NEK10	152110	genome.wustl.edu	37	3	27216186	27216186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000396636	-1	known	p.E882K	0.880	63	0%	41	34.1%	-	-	benign(0.086)	tolerated(0.25)	neutral(0.043)	NULL
NEK10	152110	genome.wustl.edu	37	3	27343254	27343254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199347.2	-1	validated	p.Q367H	1.000	91	0%	36	44.4%	-	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	superfamily_ARM repeat
NEK10	152110	genome.wustl.edu	37	3	27385817	27385817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199347.2	-1	validated	p.R103H	1.000	248	0%	58	25.9%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_ARM repeat
SLC4A7	9497	genome.wustl.edu	37	3	27463228	27463228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003615.3	-1	validated	p.A428S	1.000	51	2%	26	19.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
RBMS3	27303	genome.wustl.edu	37	3	29781260	29781260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003793.2	+1	reviewed	p.S150Y	1.000	176	0%	71	45.1%	-	-	possibly_damaging(0.909)	tolerated(0.06)	deleterious(0.684)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBMS3	27303	genome.wustl.edu	37	3	30029683	30029683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003793.2	+1	reviewed	p.T383M	1.000	111	0%	59	35.6%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
TGFBR2	7048	genome.wustl.edu	37	3	30691813	30691813	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024847.2	+1	reviewed	p.K130	0.000	118	0%	53	37.7%	-	-	-	-	-	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like
GADL1	339896	genome.wustl.edu	37	3	30891511	30891511	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207359.2	-1	validated	p.L210V	1.000	134	0%	35	31.4%	-	-	benign(0.089)	deleterious(0)	neutral(0.451)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
OSBPL10	114884	genome.wustl.edu	37	3	31710204	31710204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017784.4	-1	reviewed	p.D676N	1.000	318	0%	161	35.4%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Oxysterol_BP
ZNF860	344787	genome.wustl.edu	37	3	32030659	32030659	+	Missense_Mutation	SNP	G	G	A	rs191554699	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137674.1	+1	provisional	p.A30T	0.994	225	0%	124	33.1%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
TRIM71	131405	genome.wustl.edu	37	3	32933128	32933128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039111.1	+1	provisional	p.A811V	1.000	33	0%	48	33.3%	-	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_NHL,superfamily_SSF101898
GLB1	2720	genome.wustl.edu	37	3	33038620	33038620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000404.2	-1	reviewed	p.D651N	0.000	86	0%	66	39.4%	-	-	benign(0.256)	tolerated(0.25)	neutral(0.064)	NULL
TMPPE	643853	genome.wustl.edu	37	3	33135227	33135227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039770.2	-1	validated	p.G154D	0.776	45	0%	60	38.3%	-	-	benign(0.167)	tolerated(0.37)	neutral(0.034)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33728567	33728567	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015097.1	-1	validated	p.G177	1.000	72	0%	48	18.8%	-	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
DCLK3	85443	genome.wustl.edu	37	3	36778755	36778755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033403.1	-1	validated	p.V466I	0.999	100	0%	85	29.4%	-	-	probably_damaging(0.983)	tolerated(0.08)	deleterious(0.729)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TRANK1	9881	genome.wustl.edu	37	3	36873447	36873447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014831.2	-1	provisional	p.V1949I	0.996	113	0%	65	36.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36893770	36893770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014831.2	-1	provisional	p.R945H	1.000	118	0%	58	46.6%	-	-	possibly_damaging(0.727)	tolerated(0.49)	neutral(0.275)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRFIP2	9209	genome.wustl.edu	37	3	37116608	37116608	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006309.2	-1	validated	e19-1	1.000	196	0%	65	36.9%	-	-	-	-	-	-
LRRFIP2	9209	genome.wustl.edu	37	3	37152483	37152483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006309.2	-1	validated	p.R171Q	1.000	117	0%	61	32.8%	-	-	possibly_damaging(0.854)	deleterious(0)	deleterious(0.774)	HMMPfam_DUF2051
DLEC1	9940	genome.wustl.edu	37	3	38139105	38139105	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007337.2	+1	reviewed	p.L848	0.224	75	0%	57	26.3%	-	-	-	-	-	NULL
OXSR1	9943	genome.wustl.edu	37	3	38257635	38257635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005109.2	+1	reviewed	p.Q161H	1.000	226	0%	87	13.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SLC22A13	9390	genome.wustl.edu	37	3	38318922	38318922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004256.3	+1	reviewed	p.P541L	0.000	110	0%	100	41%	-	-	benign(0.011)	tolerated(0.36)	neutral(0.021)	NULL
SLC22A14	9389	genome.wustl.edu	37	3	38347757	38347757	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004803.3	+1	validated	p.S80	0.000	100	0%	57	35.1%	-	-	-	-	-	NULL
ACVR2B	93	genome.wustl.edu	37	3	38522888	38522888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001106.3	+1	reviewed	p.V336M	0.966	76	0%	69	46.4%	-	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SCN5A	6331	genome.wustl.edu	37	3	38627239	38627239	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099404.1	-1	reviewed	p.S910	0.769	137	0%	114	36.8%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN10A	6336	genome.wustl.edu	37	3	38743423	38743423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006514.2	-1	validated	p.E1522K	1.000	135	0%	41	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38783942	38783942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006514.2	-1	validated	p.P649L	0.979	56	0%	48	39.6%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
WDR48	57599	genome.wustl.edu	37	3	39126197	39126197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020839.2	+1	provisional	p.A448D	1.000	126	0%	85	41.2%	-	-	possibly_damaging(0.689)	deleterious(0.01)	deleterious(0.652)	NULL
TTC21A	199223	genome.wustl.edu	37	3	39167796	39167796	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105513.2	+1	validated	p.V487	0.000	88	0%	82	36.6%	-	-	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39229286	39229286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194293.2	-1	provisional	p.R551W	0.992	32	0%	40	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xin
MYRIP	25924	genome.wustl.edu	37	3	40204302	40204302	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015460.2	+1	validated	e4+1	1.000	139	0.7%	77	37.7%	-	-	-	-	-	-
RPL14	9045	genome.wustl.edu	37	3	40499048	40499048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000435633	+1	known	p.A29G	0.994	4	0.000	10	0.600	-	-	unknown(0)	-	-	NULL
RPL14	9045	genome.wustl.edu	37	3	40499409	40499409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001034996.1	+1	reviewed	p.R11L	1.000	186	0%	287	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266972	41266972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098209.1	+1	reviewed	p.A215T	1.000	175	0%	35	34.3%	-	-	benign(0.008)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00185,superfamily_ARM repeat
CTNNB1	1499	genome.wustl.edu	37	3	41280695	41280695	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098209.1	+1	reviewed	p.E736	0.997	54	0%	19	31.6%	-	-	-	-	-	NULL
LYZL4	131375	genome.wustl.edu	37	3	42448647	42448647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144634.2	-1	provisional	p.D33N	0.000	99	0%	78	29.5%	-	-	benign(0.15)	tolerated(0.13)	neutral(0.266)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
NKTR	4820	genome.wustl.edu	37	3	42660574	42660574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005385.3	+1	reviewed	p.R66C	1.000	242	0%	69	14.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase
NKTR	4820	genome.wustl.edu	37	3	42674135	42674135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005385.3	+1	reviewed	p.S198L	1.000	110	0.9%	34	41.2%	-	-	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	NULL
NKTR	4820	genome.wustl.edu	37	3	42678627	42678627	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005385.3	+1	reviewed	p.S477	0.861	63	0%	23	43.5%	-	-	-	-	-	NULL
NKTR	4820	genome.wustl.edu	37	3	42680224	42680224	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005385.3	+1	reviewed	p.R1010*	1.000	34	0%	28	32.1%	-	-	-	-	-	NULL
LOC100287203	100287203	genome.wustl.edu	37	3	42727046	42727046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342329.1	-1	model	p.L363M	0.973	11	0%	13	46.2%	-	-	-	-	-	NULL
KBTBD5	131377	genome.wustl.edu	37	3	42727784	42727784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152393.2	+1	validated	p.R225H	1.000	21	0%	34	35.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_BACK
LOC100287203	100287203	genome.wustl.edu	37	3	42728247	42728247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342329.1	-1	model	p.A186T	0.707	7	0.000	18	0.333	-	-	-	-	-	NULL
HIGD1A	25994	genome.wustl.edu	37	3	42827602	42827602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099668.1	-1	validated	p.S64R	0.995	48	0%	31	38.7%	-	-	possibly_damaging(0.946)	tolerated(0.46)	neutral(0.402)	HMMPfam_HIG_1_N
ZNF662	389114	genome.wustl.edu	37	3	42956704	42956704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134656.1	+1	validated	p.R406I	1.000	131	0%	104	43.3%	-	-	benign(0.022)	deleterious(0)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SNRK	54861	genome.wustl.edu	37	3	43389714	43389714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100594.1	+1	validated	p.G655S	0.990	40	0%	44	34.1%	-	-	benign(0.017)	tolerated(0.29)	neutral(0.030)	NULL
SNRK	54861	genome.wustl.edu	37	3	43389823	43389823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100594.1	+1	validated	p.S691F	1.000	106	0%	90	38.9%	-	-	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
ANO10	55129	genome.wustl.edu	37	3	43618744	43618744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018075.3	-1	validated	p.R201H	0.999	31	0%	13	38.5%	-	-	possibly_damaging(0.924)	tolerated(0.14)	deleterious(0.623)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44328962	44328962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145030.1	+1	validated	p.S1173Y	1.000	92	0%	38	44.7%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
ZNF445	353274	genome.wustl.edu	37	3	44488563	44488563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181489.5	-1	validated	p.R867H	0.996	181	0%	87	35.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_SSF57667
ZNF445	353274	genome.wustl.edu	37	3	44489731	44489731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181489.5	-1	validated	p.L478I	0.012	182	0%	134	12.7%	-	-	benign(0.39)	tolerated(1)	neutral(0.125)	superfamily_SSF57667
ZNF852	285346	genome.wustl.edu	37	3	44541406	44541406	+	Missense_Mutation	SNP	C	C	T	rs186660651	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436261	-1	known	p.R288Q	0.001	92	0%	53	34%	-	-	possibly_damaging(0.696)	tolerated(1)	neutral(0.249)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF852	285346	genome.wustl.edu	37	3	44541800	44541800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436261	-1	known	p.K157Q	1.000	57	0%	40	17.5%	-	-	possibly_damaging(0.865)	deleterious(0.02)	deleterious(0.718)	superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44685350	44685350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006991.3	+1	reviewed	p.D910Y	1.000	91	0%	39	33.3%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF502	91392	genome.wustl.edu	37	3	44763689	44763689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134440.1	+1	validated	p.E460D	1.000	164	0%	96	42.7%	-	-	benign(0.167)	deleterious(0.02)	neutral(0.398)	superfamily_SSF57667
ZNF501	115560	genome.wustl.edu	37	3	44776442	44776442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145044.2	+1	validated	p.L177F	0.843	154	0%	103	35.9%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIF15	56992	genome.wustl.edu	37	3	44856463	44856463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020242.2	+1	validated	p.S815F	1.000	170	0%	125	29.6%	-	-	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	NULL
TMEM42	131616	genome.wustl.edu	37	3	44905741	44905741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144638.1	+1	provisional	p.S82Y	0.712	300	0%	410	31.7%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
TGM4	7047	genome.wustl.edu	37	3	44926842	44926842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003241.3	+1	validated	p.F15L	0.001	74	0%	63	33.3%	-	-	benign(0.15)	tolerated(0.2)	neutral(0.062)	HMMPfam_Transglut_N,superfamily_Ig_E-set
TGM4	7047	genome.wustl.edu	37	3	44935130	44935130	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003241.3	+1	validated	p.G164	0.051	99	0%	95	40%	-	-	-	-	-	superfamily_SSF54001
CLEC3B	7123	genome.wustl.edu	37	3	45077070	45077070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003278.2	+1	validated	p.T88M	0.002	21	0%	34	38.2%	-	-	benign(0.279)	tolerated(0.23)	neutral(0.072)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LARS2	23395	genome.wustl.edu	37	3	45533121	45533121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015340.3	+1	reviewed	p.R451Q	0.972	122	0%	66	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_ValRS_IleRS_edit,superfamily_SSF52374
LIMD1	8994	genome.wustl.edu	37	3	45714214	45714214	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014240.2	+1	validated	p.P558	0.007	105	0%	100	39%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
SLC6A20	54716	genome.wustl.edu	37	3	45812903	45812903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020208.3	-1	reviewed	p.Q247H	1.000	152	0%	156	10.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
SLC6A20	54716	genome.wustl.edu	37	3	45823693	45823693	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020208.3	-1	reviewed	p.I48	0.989	66	0%	69	36.2%	-	-	-	-	-	HMMPfam_SNF
CCR1	1230	genome.wustl.edu	37	3	46245399	46245399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001295.2	-1	reviewed	p.V136I	1.000	98	0%	42	38.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR3	1232	genome.wustl.edu	37	3	46307487	46307487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001837.3	+1	reviewed	p.D280N	0.236	107	0%	54	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TDGF1	6997	genome.wustl.edu	37	3	46621452	46621452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003212.3	+1	reviewed	p.S117Y	0.001	87	0%	79	36.7%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_CFC
ALS2CL	259173	genome.wustl.edu	37	3	46717764	46717764	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_147129.2	-1	validated	p.Q719	0.997	32	0%	49	12.2%	-	-	-	-	-	superfamily_VPS9 domain (Pfam 02204)
PRSS50	29122	genome.wustl.edu	37	3	46755806	46755806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013270.4	-1	validated	p.S219I	0.068	53	0%	86	39.5%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PTH1R	5745	genome.wustl.edu	37	3	46939867	46939867	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000316.2	+1	reviewed	e6-1	1.000	29	0%	79	16.5%	-	-	-	-	-	-
PTH1R	5745	genome.wustl.edu	37	3	46940059	46940059	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000313063	+1	known	p.A380	0.000	16	0%	41	48.8%	-	-	-	-	-	HMMPfam_7tm_2
NBEAL2	23218	genome.wustl.edu	37	3	47030652	47030652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015175.1	+1	validated	p.A116V	0.014	65	0%	146	37%	-	-	possibly_damaging(0.84)	tolerated(0.18)	neutral(0.378)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47042644	47042644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015175.1	+1	validated	p.R1487C	1.000	109	0%	166	39.8%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
SETD2	29072	genome.wustl.edu	37	3	47061295	47061295	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014159.6	-1	reviewed	p.T2462	0.998	558	0%	309	11.3%	-	-	-	-	-	HMMPfam_SRI_2
SETD2	29072	genome.wustl.edu	37	3	47164908	47164908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014159.6	-1	reviewed	p.H406Q	0.993	91	0%	32	37.5%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
KLHL18	23276	genome.wustl.edu	37	3	47385167	47385167	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025010.4	+1	validated	p.G487	1.000	44	0%	42	40.5%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CSPG5	10675	genome.wustl.edu	37	3	47619018	47619018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006574.3	-1	validated	p.E166D	0.185	14	0%	36	38.9%	-	-	possibly_damaging(0.751)	deleterious(0)	deleterious(0.720)	HMMPfam_Chon_Sulph_att
SMARCC1	6599	genome.wustl.edu	37	3	47727553	47727553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003074.3	-1	validated	p.W457C	1.000	123	0%	89	22.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SWIRM
DHX30	22907	genome.wustl.edu	37	3	47890791	47890791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138615.2	+1	reviewed	p.E1013D	1.000	20	0%	71	38%	-	-	benign(0.043)	tolerated(0.25)	neutral(0.040)	HMMPfam_DUF1605
MAP4	4134	genome.wustl.edu	37	3	47957625	47957625	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002375.4	-1	reviewed	p.L564	0.002	173	0%	87	35.6%	-	-	-	-	-	NULL
MAP4	4134	genome.wustl.edu	37	3	47957822	47957822	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002375.4	-1	reviewed	p.E499*	0.007	196	0%	107	34.6%	-	-	-	-	-	NULL
NME6	10201	genome.wustl.edu	37	3	48337618	48337618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005793.3	-1	provisional	p.F83Y	1.000	108	0%	122	34.4%	-	-	possibly_damaging(0.521)	tolerated(0.1)	neutral(0.462)	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
PLXNB1	5364	genome.wustl.edu	37	3	48454504	48454504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130082.1	-1	validated	p.R1537Q	1.000	109	0%	184	37%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
PLXNB1	5364	genome.wustl.edu	37	3	48459662	48459662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130082.1	-1	validated	p.R1054W	0.177	30	0%	50	34%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_PSI,HMMSmart_SM00423
COL7A1	1294	genome.wustl.edu	37	3	48603707	48603707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000094.3	-1	reviewed	p.Q2800	1.000	32	0%	76	34.2%	-	-	-	-	-	NULL
COL7A1	1294	genome.wustl.edu	37	3	48625746	48625746	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000094.3	-1	reviewed	p.A893	0.000	6	0.000	37	0.459	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC25A20	788	genome.wustl.edu	37	3	48896629	48896629	+	Missense_Mutation	SNP	C	C	T	rs149062915	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000387.4	-1	reviewed	p.S205N	0.962	59	0%	69	30.4%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_Mitoch_carrier
QRICH1	54870	genome.wustl.edu	37	3	49114382	49114382	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017730.2	-1	validated	p.P23	0.478	107	0%	113	41.6%	-	-	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49159213	49159213	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002292.3	-1	reviewed	p.E1668	0.990	78	0%	169	37.3%	-	-	-	-	-	NULL
KLHDC8B	200942	genome.wustl.edu	37	3	49210370	49210370	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173546.1	+1	provisional	p.S56	0.652	27	0%	70	40%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHDC8B	200942	genome.wustl.edu	37	3	49210567	49210567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173546.1	+1	provisional	p.T122N	0.951	18	0%	48	29.2%	-	-	possibly_damaging(0.646)	deleterious(0.02)	deleterious(0.610)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
CCDC36	339834	genome.wustl.edu	37	3	49294495	49294495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135197.1	+1	validated	p.P522H	0.009	57	0%	58	32.8%	-	-	possibly_damaging(0.861)	tolerated(0.18)	neutral(0.389)	NULL
C3orf62	375341	genome.wustl.edu	37	3	49308715	49308715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198562.2	-1	validated	p.G234	0.000	87	0%	100	42%	-	-	-	-	-	NULL
DAG1	1605	genome.wustl.edu	37	3	49568591	49568591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004393.4	+1	reviewed	p.S216I	0.259	108	0%	134	39.6%	-	-	benign(0.393)	tolerated(0.15)	neutral(0.367)	HMMPfam_DAG1,superfamily_SSF111006
BSN	8927	genome.wustl.edu	37	3	49662452	49662452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003458.3	+1	reviewed	p.R90I	1.000	26	0%	30	46.7%	-	-	probably_damaging(0.959)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49694787	49694787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003458.3	+1	reviewed	p.R2600W	0.975	24	0%	49	32.7%	-	-	unknown(0)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49699985	49699985	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003458.3	+1	reviewed	p.S3569	0.948	13	0%	42	38.1%	-	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49700396	49700396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003458.3	+1	reviewed	p.A3602V	1.000	41	0%	80	30%	-	-	unknown(0)	-	-	NULL
CDHR4	389118	genome.wustl.edu	37	3	49831072	49831072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007540.2	-1	provisional	p.D523Y	1.000	181	0%	234	48.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDHR4	389118	genome.wustl.edu	37	3	49832649	49832649	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007540.2	-1	provisional	p.R337	0.223	37	0%	60	38.3%	-	-	-	-	-	superfamily_Cadherin-like
SEMA3F	6405	genome.wustl.edu	37	3	50220414	50220414	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004186.3	+1	validated	p.P327	0.043	47	0%	98	32.7%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GNAI2	2771	genome.wustl.edu	37	3	50295033	50295033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002070.2	+1	reviewed	p.A327T	1.000	30	0%	53	34%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASSF1	11186	genome.wustl.edu	37	3	50369110	50369110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170714.1	-1	reviewed	p.L218M	1.000	19	0%	53	34%	-	-	probably_damaging(0.991)	-	-	HMMPfam_RA,HMMSmart_SM00314
ZMYND10	51364	genome.wustl.edu	37	3	50379839	50379839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015896.2	-1	validated	p.R288W	1.000	119	0%	185	32.4%	-	-	possibly_damaging(0.747)	deleterious(0.01)	deleterious(0.679)	NULL
TMEM115	11070	genome.wustl.edu	37	3	50392814	50392814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007024.4	-1	validated	p.S339F	1.000	58	0%	95	30.5%	-	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
MAPKAPK3	7867	genome.wustl.edu	37	3	50681894	50681894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004635.3	+1	reviewed	p.D187N	1.000	128	0%	99	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK3	1795	genome.wustl.edu	37	3	51264805	51264805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004947.3	+1	validated	p.I490S	1.000	123	0%	54	33.3%	-	-	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51394453	51394453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004947.3	+1	validated	p.R1522C	1.000	54	0%	32	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
RBM15B	29890	genome.wustl.edu	37	3	51430840	51430840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013286.3	+1	validated	p.H670	0.079	37	0%	53	41.5%	-	-	-	-	-	NULL
VPRBP	9730	genome.wustl.edu	37	3	51456222	51456222	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014703.2	-1	validated	p.G1062	1.000	51	0%	40	37.5%	-	-	-	-	-	superfamily_WD40 repeat-like
RAD54L2	23132	genome.wustl.edu	37	3	51675865	51675865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015106.2	+1	validated	p.R778*	1.000	202	0%	82	41.5%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM2	2912	genome.wustl.edu	37	3	51746633	51746633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000839.3	+1	reviewed	p.L199I	1.000	136	0%	188	36.2%	-	-	probably_damaging(0.966)	tolerated(0.19)	neutral(0.457)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
IQCF1	132141	genome.wustl.edu	37	3	51928970	51928970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152397.2	-1	validated	p.E185G	0.996	38	0%	37	54.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PARP3	10039	genome.wustl.edu	37	3	51979514	51979514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003931.2	+1	reviewed	p.L296M	1.000	14	0%	41	39%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PARP_reg,superfamily_PARP_reg
ACY1	95	genome.wustl.edu	37	3	52019951	52019951	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000666.1	+1	reviewed	p.C116	1.000	88	0%	161	47.2%	-	-	-	-	-	PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_Peptidase_M20,superfamily_SSF53187
ENSG00000173366	0	genome.wustl.edu	37	3	52256010	52256010	+	Silent	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000494383	-1	known	p.A928P	1.000	14	0%	37	27%	-	-	-	-	-	superfamily_L domain-like
DNAH1	25981	genome.wustl.edu	37	3	52356582	52356582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015512.4	+1	validated	p.L42F	0.000	71	0%	133	36.1%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52398910	52398910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015512.4	+1	validated	p.L1798R	1.000	43	0%	97	20.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52414034	52414034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015512.4	+1	validated	p.M2497I	0.987	41	0%	104	44.2%	-	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	superfamily_P-loop containing nucleoside triphosphate hydrolases
STAB1	23166	genome.wustl.edu	37	3	52554519	52554519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015136.2	+1	reviewed	p.G1868D	0.999	40	0%	76	40.8%	-	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	superfamily_FAS1 domain
GLT8D1	55830	genome.wustl.edu	37	3	52734314	52734314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010983.1	-1	reviewed	p.L27I	1.000	148	0%	150	37.3%	-	-	possibly_damaging(0.892)	tolerated(0.05)	deleterious(0.697)	NULL
NEK4	6787	genome.wustl.edu	37	3	52773517	52773517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003157.3	-1	validated	p.R743W	0.994	199	0%	129	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITIH3	3699	genome.wustl.edu	37	3	52835039	52835039	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002217.3	+1	validated	p.F420	0.998	128	0%	163	46.6%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ITIH4	3700	genome.wustl.edu	37	3	52847991	52847991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002218.4	-1	reviewed	p.R908I	1.000	31	0%	47	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ITI_HC_C
SFMBT1	51460	genome.wustl.edu	37	3	52964380	52964380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005158.1	-1	reviewed	p.S288P	1.000	100	1%	60	43.3%	-	-	benign(0.266)	tolerated(0.06)	neutral(0.351)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
RFT1	91869	genome.wustl.edu	37	3	53126417	53126417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052859.3	-1	reviewed	p.A476T	0.066	82	0%	71	35.2%	-	-	benign(0.025)	tolerated(0.07)	neutral(0.320)	HMMPfam_Rft-1
CACNA1D	776	genome.wustl.edu	37	3	53844234	53844234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000720.2	+1	validated	p.R2054Q	1.000	36	2.8%	53	30.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53845394	53845394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000720.2	+1	validated	p.E2169D	1.000	25	0%	34	35.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
WNT5A	7474	genome.wustl.edu	37	3	55504094	55504094	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000442038	-1	known	p.P122	0.000	28	0%	42	35.7%	-	-	-	-	-	NULL
ERC2	26059	genome.wustl.edu	37	3	55733530	55733530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015576.1	-1	validated	p.R908I	1.000	151	0%	48	39.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cast
CCDC66	285331	genome.wustl.edu	37	3	56651505	56651505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141947.1	+1	validated	p.E737K	1.000	99	0%	57	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56667372	56667372	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001112736.1	-1	validated	p.E1149	0.999	166	0%	76	34.2%	-	-	-	-	-	NULL
ARHGEF3	50650	genome.wustl.edu	37	3	56771257	56771257	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128615.1	-1	reviewed	p.R365*	0.161	65	0%	35	22.9%	-	-	-	-	-	HMMSmart_PH,superfamily_SSF50729
IL17RD	54756	genome.wustl.edu	37	3	57139902	57139902	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017563.3	-1	validated	p.R244*	0.997	85	0%	64	40.6%	-	-	-	-	-	NULL
APPL1	26060	genome.wustl.edu	37	3	57269634	57269634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012096.2	+1	reviewed	p.A32V	1.000	165	0%	91	22%	-	-	possibly_damaging(0.935)	tolerated(0.06)	deleterious(0.703)	NULL
APPL1	26060	genome.wustl.edu	37	3	57283420	57283420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012096.2	+1	reviewed	p.R299K	1.000	144	0%	86	43%	-	-	benign(0.209)	deleterious(0)	neutral(0.465)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
DNAH12	201625	genome.wustl.edu	37	3	57454638	57454638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178504.4	-1	validated	p.R725Q	1.000	115	0%	35	28.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DHC_N2
DNAH12	201625	genome.wustl.edu	37	3	57457255	57457255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178504.4	-1	validated	p.E619*	0.005	262	0%	119	42.9%	-	-	-	-	-	NULL
SLMAP	7871	genome.wustl.edu	37	3	57875801	57875801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007159.2	+1	validated	p.A411V	0.999	162	0%	77	36.4%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
FLNB	2317	genome.wustl.edu	37	3	57994483	57994483	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001457.3	+1	reviewed	p.R64	1.000	36	0%	75	12%	-	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
FLNB	2317	genome.wustl.edu	37	3	58090907	58090907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001457.3	+1	reviewed	p.V571M	1.000	172	0%	97	13.4%	-	-	possibly_damaging(0.912)	deleterious(0.03)	deleterious(0.728)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58117681	58117681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000490882	+1	known	p.R1473H	1.000	69	0%	91	31.9%	-	-	probably_damaging(0.979)	tolerated(0.12)	deleterious(0.682)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58131710	58131710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001457.3	+1	reviewed	p.G1830C	1.000	133	0%	114	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58132722	58132722	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001457.3	+1	reviewed	e34+2	1.000	103	0%	81	12.3%	-	-	-	-	-	-
FLNB	2317	genome.wustl.edu	37	3	58133991	58133991	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001457.3	+1	reviewed	p.D1929	1.000	43	0%	40	12.5%	-	-	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set
KCTD6	200845	genome.wustl.edu	37	3	58487334	58487334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128214.1	+1	validated	p.R230M	0.923	34	0%	18	33.3%	-	-	benign(0.345)	deleterious(0)	deleterious(0.553)	NULL
ACOX2	8309	genome.wustl.edu	37	3	58516224	58516224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003500.3	-1	reviewed	p.V321I	0.171	56	0%	68	38.2%	-	-	benign(0.009)	tolerated(0.13)	neutral(0.253)	superfamily_AcylCoADH_C_like
FAM107A	11170	genome.wustl.edu	37	3	58552895	58552895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000464064	-1	known	p.G123W	0.000	13	0%	14	35.7%	-	-	benign(0.291)	deleterious(0)	deleterious(0.534)	HMMPfam_DUF1151
C3orf14	57415	genome.wustl.edu	37	3	62317001	62317001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020685.3	+1	predicted	p.D60G	1.000	129	0%	40	32.5%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
CADPS	8618	genome.wustl.edu	37	3	62739423	62739423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003716.3	-1	reviewed	p.A194V	1.000	28	0%	17	41.2%	-	-	benign(0.122)	tolerated(0.64)	neutral(0.013)	NULL
PRICKLE2	166336	genome.wustl.edu	37	3	64184496	64184496	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198859.3	-1	validated	p.E36	1.000	66	0%	28	39.3%	-	-	-	-	-	HMMPfam_PET
MAGI1	9223	genome.wustl.edu	37	3	65342645	65342645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033057.1	-1	reviewed	p.P1266L	0.863	218	0%	350	33.7%	-	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
MAGI1	9223	genome.wustl.edu	37	3	65433695	65433695	+	Splice_Site	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033057.1	-1	reviewed	e7+2	1.000	95	0%	44	18.2%	-	-	-	-	-	-
FAM19A1	407738	genome.wustl.edu	37	3	68466492	68466492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213609.2	+1	reviewed	p.R61W	1.000	123	0%	30	23.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MITF	4286	genome.wustl.edu	37	3	70014333	70014333	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198159.2	+1	reviewed	p.P499	0.000	100	0%	44	20.5%	-	-	-	-	-	NULL
SHQ1	55164	genome.wustl.edu	37	3	72864529	72864529	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018130.2	-1	validated	p.K303T	1.000	266	0%	110	29.1%	-	-	probably_damaging(0.974)	tolerated(0.07)	deleterious(0.735)	HMMPfam_SHQ1
PDZRN3	23024	genome.wustl.edu	37	3	73453428	73453428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015009.1	-1	provisional	p.T346M	0.988	170	0%	81	35.8%	-	-	possibly_damaging(0.836)	deleterious(0.04)	deleterious(0.668)	superfamily_PDZ domain-like
ROBO2	6092	genome.wustl.edu	37	3	77600082	77600082	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128929.1	+1	reviewed	p.P372S	1.000	75	0%	30	33.3%	-	-	-	-	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77666831	77666831	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128929.1	+1	reviewed	p.Y1134*	1.000	64	0%	21	33.3%	-	-	benign(0.134)	deleterious(0.01)	neutral(0.417)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78700930	78700930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002941.3	-1	reviewed	p.R922C	1.000	87	0%	28	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROBO1	6091	genome.wustl.edu	37	3	79174695	79174695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000305299	-1	known	p.P5L	1.000	163	0%	41	46.3%	-	-	-	-	-	NULL
GBE1	2632	genome.wustl.edu	37	3	81643118	81643118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000264326	-1	known	p.R350H	0.990	160	0%	21	28.6%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00642,superfamily_(Trans)glycosidases
VGLL3	389136	genome.wustl.edu	37	3	87017961	87017961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016206.2	-1	validated	p.R239H	1.000	104	0%	65	27.7%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
PROS1	5627	genome.wustl.edu	37	3	93593206	93593206	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000313.3	-1	reviewed	p.G638	1.000	158	0%	80	15%	-	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NSUN3	63899	genome.wustl.edu	37	3	93803123	93803123	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022072.3	+1	provisional	p.R99*	0.078	161	0%	67	23.9%	-	-	-	-	-	superfamily_SSF53335
EPHA6	285220	genome.wustl.edu	37	3	96706727	96706727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080448.2	+1	provisional	p.E335G	0.997	120	0%	53	24.5%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
EPHA6	285220	genome.wustl.edu	37	3	97167565	97167565	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080448.2	+1	provisional	p.G629*	1.000	111	0%	31	29%	-	-	-	-	-	superfamily_Fibronectin type III
EPHA6	285220	genome.wustl.edu	37	3	97198165	97198165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080448.2	+1	provisional	p.M677I	1.000	208	0%	204	37.7%	-	-	benign(0.025)	tolerated(0.24)	neutral(0.038)	NULL
EPHA6	285220	genome.wustl.edu	37	3	97251282	97251282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080448.2	+1	provisional	p.G761C	1.000	189	0%	44	36.4%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MINA	84864	genome.wustl.edu	37	3	97686036	97686036	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042533.1	-1	validated	p.T134	0.977	210	0%	256	37.5%	-	-	-	-	-	HMMPfam_Cupin_4,superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97744433	97744433	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105580.1	-1	provisional	p.F72	1.000	235	0%	67	29.9%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
OR5K4	403278	genome.wustl.edu	37	3	98073241	98073241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005517.1	+1	provisional	p.L182I	0.279	122	0%	38	39.5%	-	-	benign(0.15)	tolerated(0.5)	neutral(0.023)	HMMPfam_7tm_1,superfamily_SSF81321
CPOX	1371	genome.wustl.edu	37	3	98307671	98307671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000097.5	-1	reviewed	p.G280E	1.000	94	0%	120	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas
ST3GAL6	10402	genome.wustl.edu	37	3	98503812	98503812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006100.2	+1	provisional	p.V120A	1.000	236	0%	69	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
COL8A1	1295	genome.wustl.edu	37	3	99509819	99509819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001850.3	+1	reviewed	p.R98I	1.000	85	0%	42	28.6%	-	-	unknown(0)	tolerated(0.09)	-	NULL
COL8A1	1295	genome.wustl.edu	37	3	99513073	99513073	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429802	+1	known	p.E111*	0.998	180	0%	103	32%	-	-	-	-	-	NULL
COL8A1	1295	genome.wustl.edu	37	3	99514219	99514219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001850.3	+1	reviewed	p.G492C	1.000	18	0%	11	54.5%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL8A1	1295	genome.wustl.edu	37	3	99514432	99514432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001850.3	+1	reviewed	p.G563C	1.000	34	0%	36	36.1%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
FILIP1L	11259	genome.wustl.edu	37	3	99568802	99568802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182909.2	-1	validated	p.A573V	1.000	126	0%	42	33.3%	-	-	benign(0.344)	tolerated(0.29)	neutral(0.138)	NULL
TFG	10342	genome.wustl.edu	37	3	100463734	100463734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007565.1	+1	validated	p.A260V	1.000	120	0%	59	47.5%	-	-	benign(0.355)	tolerated(0.13)	neutral(0.365)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100513832	100513832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015429.3	-1	validated	p.R608Q	0.610	158	0%	41	48.8%	-	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100569566	100569566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015429.3	-1	validated	p.R413H	0.921	186	0%	60	35%	-	-	benign(0.003)	tolerated(0.05)	neutral(0.345)	NULL
SENP7	57337	genome.wustl.edu	37	3	101062618	101062618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020654.3	-1	validated	p.S673Y	1.000	126	0%	38	34.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101284161	101284161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017819.2	+1	provisional	p.F179C	0.102	51	0%	49	38.8%	-	-	possibly_damaging(0.835)	deleterious(0)	deleterious(0.763)	NULL
ALCAM	214	genome.wustl.edu	37	3	105253608	105253608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001627.2	+1	validated	p.P217T	1.000	136	0%	46	37%	-	-	possibly_damaging(0.688)	tolerated(0.29)	neutral(0.275)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
ALCAM	214	genome.wustl.edu	37	3	105268983	105268983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001627.2	+1	validated	p.P463S	1.000	79	1.3%	24	41.7%	-	-	benign(0.002)	tolerated(0.69)	neutral(0.002)	HMMSmart_SM00408,superfamily_Immunoglobulin
BBX	56987	genome.wustl.edu	37	3	107429365	107429365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142568.1	+1	validated	p.R20*	1.000	173	0%	52	38.5%	-	-	-	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107520024	107520024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000416476	+1	known	p.P542L	0.000	71	0%	40	22.5%	-	-	unknown(0)	-	-	NULL
MYH15	22989	genome.wustl.edu	37	3	108147656	108147656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014981.1	-1	validated	p.A1149T	0.171	137	0%	99	44.4%	-	-	benign(0.04)	tolerated(0.09)	neutral(0.299)	HMMPfam_Myosin_tail_1
MORC1	27136	genome.wustl.edu	37	3	108754210	108754210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014429.3	-1	reviewed	p.G479V	0.911	214	0%	45	15.6%	-	-	benign(0.139)	tolerated(0.07)	neutral(0.331)	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111764702	111764702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042575.2	+1	validated	p.K88N	1.000	229	0%	68	39.7%	-	-	probably_damaging(0.996)	tolerated(0.31)	deleterious(0.489)	HMMPfam_SEA,superfamily_SEA domain
GCET2	257144	genome.wustl.edu	37	3	111851957	111851957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152785.3	-1	reviewed	p.S4Y	0.078	250	0%	89	44.9%	-	-	possibly_damaging(0.509)	tolerated(0.16)	neutral(0.230)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111887846	111887846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183061.1	-1	validated	p.T1039A	0.002	153	0%	71	35.2%	-	-	possibly_damaging(0.496)	tolerated(0.84)	neutral(0.166)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111898393	111898393	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183061.1	-1	validated	p.C968	1.000	178	0%	109	35.8%	-	-	-	-	-	HMMPfam_cNMP_binding,superfamily_cAMP-binding domain-like
CCDC80	151887	genome.wustl.edu	37	3	112328959	112328959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000479368	-1	known	p.S42I	0.000	71	0%	35	20%	-	-	unknown(0)	deleterious(0.03)	-	NULL
LOC100288391	100288391	genome.wustl.edu	37	3	112969571	112969571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342393.1	-1	model	p.P223S	0.929	105	1%	96	38.5%	-	-	-	-	-	NULL
BOC	91653	genome.wustl.edu	37	3	113002319	113002319	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033254.2	+1	validated	p.P831	0.001	76	0%	103	41.7%	-	-	-	-	-	NULL
SPICE1	152185	genome.wustl.edu	37	3	113207803	113207803	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000467618	-1	known	p.R12Q	0.000	151	0%	75	32%	-	-	-	-	-	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113374770	113374770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009899.2	-1	validated	p.S1920F	1.000	167	0%	40	45%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113595078	113595078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017577.4	+1	validated	p.A144T	1.000	147	0%	66	39.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113655209	113655209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017577.4	+1	validated	p.R518Q	0.995	128	0%	59	39%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
GAP43	2596	genome.wustl.edu	37	3	115395246	115395246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130064.1	+1	reviewed	p.E175D	1.000	43	0%	24	41.7%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Neuromodulin
IGSF11	152404	genome.wustl.edu	37	3	118649029	118649029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001015887.1	-1	validated	p.S49I	0.801	135	0%	35	22.9%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGSF11	152404	genome.wustl.edu	37	3	118824024	118824024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152538.2	-1	validated	p.L6I	0.019	248	0%	124	29%	-	-	benign(0)	-	-	NULL
B4GALT4	8702	genome.wustl.edu	37	3	118943071	118943071	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003778.3	-1	reviewed	p.R170*	1.000	75	0%	43	34.9%	-	-	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
B4GALT4	8702	genome.wustl.edu	37	3	118945760	118945760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003778.3	-1	reviewed	p.V128I	1.000	93	0%	47	51.1%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
ARHGAP31	57514	genome.wustl.edu	37	3	119134684	119134684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020754.2	+1	reviewed	p.A1303V	0.989	77	0%	29	37.9%	-	-	-	-	-	NULL
GPR156	165829	genome.wustl.edu	37	3	119886361	119886361	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153002.2	-1	validated	p.R655*	0.001	28	0%	27	51.9%	-	-	-	-	-	NULL
HGD	3081	genome.wustl.edu	37	3	120393782	120393782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000187.3	-1	reviewed	p.A48T	0.999	185	0%	33	27.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_HgmA,superfamily_RmlC-like cupins
STXBP5L	9515	genome.wustl.edu	37	3	121137909	121137909	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014980.2	+1	validated	p.L1176	1.000	249	0%	54	33.3%	-	-	-	-	-	NULL
POLQ	10721	genome.wustl.edu	37	3	121207509	121207509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199420.3	-1	validated	p.L1423F	0.000	70	0%	31	45.2%	-	-	benign(0.267)	tolerated(0.17)	neutral(0.087)	NULL
ARGFX	503582	genome.wustl.edu	37	3	121305118	121305118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012659.1	+1	validated	p.D207Y	0.002	209	0%	104	25%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FBXO40	51725	genome.wustl.edu	37	3	121342181	121342181	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016298.3	+1	validated	p.V635	1.000	26	3.8%	21	42.9%	-	-	-	-	-	superfamily_F-box domain
HCLS1	3059	genome.wustl.edu	37	3	121356006	121356006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000412597	-1	known	p.T166M	0.998	174	0%	119	10.9%	-	-	unknown(0)	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121383403	121383403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004487.3	-1	validated	p.R3235Q	1.000	118	0.8%	72	41.7%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CASR	846	genome.wustl.edu	37	3	122003015	122003015	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000388.3	+1	reviewed	p.I738	1.000	25	0%	47	44.7%	-	-	-	-	-	HMMPfam_7tm_3
KPNA1	3836	genome.wustl.edu	37	3	122182861	122182861	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002264.3	-1	reviewed	p.E89*	1.000	156	0%	76	35.5%	-	-	-	-	-	HMMPfam_IBB,superfamily_ARM repeat
PARP9	83666	genome.wustl.edu	37	3	122271295	122271295	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031458.2	-1	validated	p.V394	0.015	65	0%	36	22.2%	-	-	-	-	-	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
PARP15	165631	genome.wustl.edu	37	3	122345757	122345757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113523.1	+1	validated	p.S439P	0.003	175	0%	54	37%	-	-	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	superfamily_Macro domain-like
PARP14	54625	genome.wustl.edu	37	3	122414308	122414308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017554.2	+1	validated	p.H212Y	0.000	59	0%	25	20%	-	-	possibly_damaging(0.914)	tolerated(0.98)	neutral(0.366)	NULL
PARP14	54625	genome.wustl.edu	37	3	122419178	122419178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017554.2	+1	validated	p.L593F	0.000	43	0%	21	47.6%	-	-	possibly_damaging(0.507)	tolerated(0.05)	deleterious(0.515)	NULL
PARP14	54625	genome.wustl.edu	37	3	122420150	122420150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017554.2	+1	validated	p.A917S	1.000	115	0%	38	21.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
UMPS	7372	genome.wustl.edu	37	3	124458954	124458954	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000373.3	+1	reviewed	p.E356*	1.000	94	0%	72	41.7%	-	-	-	-	-	HMMPfam_OMPdecase,superfamily_Ribulose-phoshate binding barrel
MUC13	56667	genome.wustl.edu	37	3	124642454	124642454	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033049.2	-1	validated	p.S185*	0.132	150	0%	71	35.2%	-	-	-	-	-	HMMSmart_SM00181,superfamily_EGF/Laminin
HEG1	57493	genome.wustl.edu	37	3	124729356	124729356	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020733.1	-1	validated	p.C1000	0.058	64	0%	55	34.5%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
SLC41A3	54946	genome.wustl.edu	37	3	125725307	125725307	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008485.1	-1	validated	p.I489	0.000	40	0%	66	31.8%	-	-	-	-	-	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125775344	125775344	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008487.1	-1	validated	p.R18*	1.000	45	0%	50	18%	-	-	-	-	-	NULL
ALDH1L1	10840	genome.wustl.edu	37	3	125824745	125824745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012190.2	-1	reviewed	p.R826Q	1.000	74	0%	98	33.7%	-	-	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ALDH1L1	10840	genome.wustl.edu	37	3	125828922	125828922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012190.2	-1	reviewed	p.N738D	1.000	92	0%	131	34.4%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ALDH1L1	10840	genome.wustl.edu	37	3	125828940	125828940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012190.2	-1	reviewed	p.R732W	0.023	96	0%	134	12.7%	-	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
KLF15	28999	genome.wustl.edu	37	3	126071724	126071724	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014079.3	-1	validated	p.S14	0.095	7	0.000	34	0.294	-	-	-	-	-	NULL
ZXDC	79364	genome.wustl.edu	37	3	126185076	126185076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025112.4	-1	validated	p.V455F	0.996	157	0%	176	36.9%	-	-	possibly_damaging(0.558)	tolerated(0.07)	deleterious(0.510)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZXDC	79364	genome.wustl.edu	37	3	126185112	126185112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025112.4	-1	validated	p.V443M	0.997	155	0%	179	14.5%	-	-	benign(0.055)	tolerated(0.1)	neutral(0.290)	superfamily_C2H2 and C2HC zinc fingers
PLXNA1	5361	genome.wustl.edu	37	3	126708318	126708318	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032242.3	+1	validated	p.S271	0.821	39	2.6%	54	29.6%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126730881	126730881	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032242.3	+1	validated	p.N708	1.000	25	0%	70	12.9%	-	-	-	-	-	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126749233	126749233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032242.3	+1	validated	p.R1714C	1.000	44	0%	81	39.5%	-	-	possibly_damaging(0.811)	tolerated(0.09)	deleterious(0.602)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA1	5361	genome.wustl.edu	37	3	126751304	126751304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032242.3	+1	validated	p.T1746M	1.000	99	0%	193	35.2%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
MCM2	4171	genome.wustl.edu	37	3	127327324	127327324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004526.2	+1	reviewed	p.D401Y	1.000	32	0%	41	39%	-	-	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	HMMSmart_MCM,superfamily_Nucleic_acid_OB
PODXL2	50512	genome.wustl.edu	37	3	127379729	127379729	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015720.2	+1	validated	p.S286	0.000	19	0%	23	52.2%	-	-	-	-	-	NULL
ABTB1	80325	genome.wustl.edu	37	3	127395167	127395167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172027.2	+1	reviewed	p.P125S	0.089	120	0%	173	13.9%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
SEC61A1	29927	genome.wustl.edu	37	3	127785825	127785825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013336.3	+1	reviewed	p.S269L	1.000	256	0%	280	33.9%	-	-	benign(0.413)	tolerated(0.06)	neutral(0.456)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
EEFSEC	60678	genome.wustl.edu	37	3	127983506	127983506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021937.3	+1	validated	p.P223L	0.989	99	0%	84	27.4%	-	-	possibly_damaging(0.77)	deleterious(0.02)	deleterious(0.669)	superfamily_Translation proteins,superfamily_P-loop containing nucleoside triphosphate hydrolases
GP9	2815	genome.wustl.edu	37	3	128780816	128780816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000174.3	+1	reviewed	p.Q78H	0.003	13	0%	23	43.5%	-	-	benign(0.053)	deleterious(0.02)	neutral(0.387)	superfamily_SSF52058
COPG1	22820	genome.wustl.edu	37	3	128991243	128991243	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016128.3	+1	validated	p.E715*	1.000	43	0%	54	31.5%	-	-	-	-	-	superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP
MBD4	8930	genome.wustl.edu	37	3	129155355	129155355	+	Missense_Mutation	SNP	G	G	A	rs149311534	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003925.1	-1	reviewed	p.R378C	0.001	170	0%	172	27.3%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
MBD4	8930	genome.wustl.edu	37	3	129156119	129156119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003925.1	-1	reviewed	p.S123*	0.985	41	0%	67	32.8%	-	-	-	-	-	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
RHO	6010	genome.wustl.edu	37	3	129247841	129247841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000539.3	+1	reviewed	p.G89C	0.420	121	0%	192	39.6%	-	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
RHO	6010	genome.wustl.edu	37	3	129252556	129252556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000539.3	+1	reviewed	p.A348T	1.000	24	0%	52	30.8%	-	-	benign(0.38)	deleterious(0)	deleterious(0.566)	superfamily_SSF81321
PLXND1	23129	genome.wustl.edu	37	3	129280492	129280492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015103.2	-1	validated	p.R1664*	1.000	35	0%	57	35.1%	-	-	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXND1	23129	genome.wustl.edu	37	3	129308214	129308214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015103.2	-1	validated	p.V490I	0.037	27	0%	41	46.3%	-	-	benign(0.069)	tolerated(0.08)	neutral(0.304)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
COL6A5	256076	genome.wustl.edu	37	3	130104021	130104021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153264.5	+1	validated	p.V559F	0.964	107	0%	29	24.1%	-	-	probably_damaging(0.987)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130107894	130107894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153264.5	+1	validated	p.S778I	0.000	145	0%	48	25%	-	-	benign(0.056)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
PIK3R4	30849	genome.wustl.edu	37	3	130464056	130464056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014602.2	-1	validated	p.N3D	1.000	14	0%	22	22.7%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Kinase_like
ASTE1	28990	genome.wustl.edu	37	3	130733113	130733113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014065.2	-1	validated	p.A610T	0.375	79	0%	24	20.8%	-	-	benign(0.168)	deleterious(0)	neutral(0.460)	NULL
ASTE1	28990	genome.wustl.edu	37	3	130743962	130743962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014065.2	-1	validated	p.F63L	1.000	97	0%	105	35.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_XPG_N,superfamily_SSF88723
DNAJC13	23317	genome.wustl.edu	37	3	132244491	132244491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015268.3	+1	validated	p.C2033Y	1.000	150	0%	56	30.4%	-	-	benign(0.001)	tolerated(1)	-	superfamily_ARM repeat
ACAD11	84129	genome.wustl.edu	37	3	132361547	132361547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032169.4	-1	validated	p.E117*	1.000	123	0%	57	47.4%	-	-	-	-	-	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
NPHP3	27031	genome.wustl.edu	37	3	132403547	132403547	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153240.3	-1	reviewed	p.L1141	1.000	94	0%	36	33.3%	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
NPHP3	27031	genome.wustl.edu	37	3	132416156	132416156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153240.3	-1	reviewed	p.S679Y	0.984	189	0%	81	42%	-	-	possibly_damaging(0.908)	tolerated(0.08)	deleterious(0.661)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM108	66000	genome.wustl.edu	37	3	133099644	133099644	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136469.1	+1	validated	p.A363	0.517	34	0%	45	31.1%	-	-	-	-	-	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133337125	133337125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007027.3	-1	reviewed	p.V1175A	0.000	117	0%	31	35.5%	-	-	benign(0.004)	tolerated(1)	-	NULL
TF	7018	genome.wustl.edu	37	3	133494306	133494306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001063.3	+1	reviewed	p.L573M	0.043	94	0%	83	27.7%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
SLCO2A1	6578	genome.wustl.edu	37	3	133654634	133654634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005630.2	-1	validated	p.D600N	0.031	40	0%	60	35%	-	-	unknown(0)	tolerated(0.25)	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
AMOTL2	51421	genome.wustl.edu	37	3	134090058	134090058	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016201.2	-1	reviewed	p.E73V	1.000	20	0%	41	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134851755	134851755	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004441.4	+1	reviewed	p.T387	0.001	47	0%	46	34.8%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
EPHB1	2047	genome.wustl.edu	37	3	134920362	134920362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004441.4	+1	reviewed	p.R726M	1.000	150	0%	68	33.8%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PPP2R3A	5523	genome.wustl.edu	37	3	135822143	135822143	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002718.3	+1	reviewed	p.H1049	1.000	160	0%	55	41.8%	-	-	-	-	-	superfamily_EF-hand
PPP2R3A	5523	genome.wustl.edu	37	3	135822208	135822208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002718.3	+1	reviewed	p.A1071V	1.000	126	0%	37	32.4%	-	-	probably_damaging(0.973)	tolerated(0.12)	deleterious(0.675)	NULL
PCCB	5096	genome.wustl.edu	37	3	135975404	135975404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000532.4	+1	reviewed	p.G104E	1.000	335	0%	314	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
PCCB	5096	genome.wustl.edu	37	3	136045681	136045681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000532.4	+1	reviewed	p.R376H	1.000	359	0%	168	38.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
STAG1	10274	genome.wustl.edu	37	3	136076617	136076617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005862.2	-1	reviewed	p.L1004I	1.000	193	0%	63	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL20RB	53833	genome.wustl.edu	37	3	136701098	136701098	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144717.2	+1	validated	p.T104	0.089	49	0%	50	40%	-	-	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
DBR1	51163	genome.wustl.edu	37	3	137881376	137881376	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016216.2	-1	validated	p.K330N	0.742	126	0%	108	38%	-	-	benign(0.067)	tolerated(0.39)	neutral(0.021)	HMMPfam_DBR1
DBR1	51163	genome.wustl.edu	37	3	137881399	137881399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016216.2	-1	validated	p.G323S	1.000	123	0%	91	38.5%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_DBR1
DBR1	51163	genome.wustl.edu	37	3	137886042	137886042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016216.2	-1	validated	p.E199K	1.000	116	0%	71	35.2%	-	-	possibly_damaging(0.838)	deleterious(0.02)	deleterious(0.703)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
ARMC8	25852	genome.wustl.edu	37	3	138003292	138003292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015396.3	+1	validated	p.N568S	1.000	119	0%	62	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ARM,superfamily_ARM-type_fold
PRR23C	389152	genome.wustl.edu	37	3	138762919	138762919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134657.1	-1	validated	p.A182T	0.000	49	0%	97	35.1%	-	-	benign(0.067)	tolerated(0.64)	neutral(0.007)	HMMPfam_DUF2476
CLSTN2	64084	genome.wustl.edu	37	3	140284983	140284983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022131.2	+1	validated	p.S919F	0.999	166	0%	92	44.6%	-	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	NULL
ACPL2	92370	genome.wustl.edu	37	3	140997297	140997297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037172.1	+1	validated	p.L65I	0.268	122	0%	109	45.9%	-	-	benign(0.032)	tolerated(0.39)	neutral(0.018)	NULL
ACPL2	92370	genome.wustl.edu	37	3	140997319	140997319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037172.1	+1	validated	p.S72I	0.004	100	0%	104	39.4%	-	-	possibly_damaging(0.685)	tolerated(0.05)	deleterious(0.590)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141161237	141161237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080412.2	+1	validated	p.V3I	1.000	66	0%	29	34.5%	-	-	possibly_damaging(0.942)	tolerated(0.06)	deleterious(0.710)	NULL
RASA2	5922	genome.wustl.edu	37	3	141327334	141327334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006506.2	+1	reviewed	p.F674L	1.000	114	0%	27	33.3%	-	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GRK7	131890	genome.wustl.edu	37	3	141535742	141535742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139209.2	+1	reviewed	p.F504L	1.000	122	0%	56	37.5%	-	-	benign(0.213)	tolerated(0.08)	neutral(0.321)	HMMSmart_S_TK_X
ATR	545	genome.wustl.edu	37	3	142226870	142226870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001184.3	-1	reviewed	p.S1645F	1.000	93	0%	45	37.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142278281	142278281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001184.3	-1	reviewed	p.R515H	0.937	133	0%	69	36.2%	-	-	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_ARM repeat
PCOLCE2	26577	genome.wustl.edu	37	3	142561772	142561772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013363.3	-1	validated	p.K189N	1.000	55	0%	31	45.2%	-	-	possibly_damaging(0.81)	tolerated(0.05)	deleterious(0.650)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PLOD2	5352	genome.wustl.edu	37	3	145822114	145822114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182943.2	-1	reviewed	p.T211A	1.000	216	0%	150	36%	-	-	benign(0.309)	tolerated(0.28)	neutral(0.128)	NULL
PLSCR2	57047	genome.wustl.edu	37	3	146159589	146159589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020359.1	-1	provisional	p.R222I	0.001	161	0%	59	37.3%	-	-	possibly_damaging(0.721)	deleterious(0.01)	deleterious(0.667)	HMMPfam_Scramblase
PLSCR2	57047	genome.wustl.edu	37	3	146173189	146173189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020359.1	-1	provisional	p.R53M	0.674	124	0%	42	33.3%	-	-	benign(0.018)	tolerated(0.51)	neutral(0.009)	HMMPfam_Scramblase
PLSCR1	5359	genome.wustl.edu	37	3	146251259	146251259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021105.2	-1	validated	p.Q31R	0.844	144	0%	71	31%	-	-	unknown(0)	tolerated(0.22)	-	NULL
ZIC1	7545	genome.wustl.edu	37	3	147130393	147130393	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000488404	+1	known	p.R46Q	0.983	76	0%	151	35.8%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CPB1	1360	genome.wustl.edu	37	3	148558683	148558683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001871.2	+1	reviewed	p.V132A	0.996	147	0.7%	46	23.9%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
GYG1	2992	genome.wustl.edu	37	3	148712025	148712025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004130.3	+1	validated	p.L35P	1.000	25	0%	40	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
HLTF	6596	genome.wustl.edu	37	3	148802669	148802669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003071.3	-1	reviewed	p.V10I	1.000	124	0%	156	12.2%	-	-	possibly_damaging(0.797)	tolerated(0.18)	neutral(0.355)	NULL
HPS3	84343	genome.wustl.edu	37	3	148857971	148857971	+	Missense_Mutation	SNP	C	C	T	rs140810728	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032383.3	+1	reviewed	p.S133L	0.084	162	0%	108	30.6%	-	-	benign(0.053)	tolerated(0.09)	neutral(0.300)	NULL
HPS3	84343	genome.wustl.edu	37	3	148858265	148858265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032383.3	+1	reviewed	p.R231Q	0.000	161	0%	77	32.5%	-	-	benign(0.14)	tolerated(0.61)	neutral(0.016)	NULL
HPS3	84343	genome.wustl.edu	37	3	148875298	148875298	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032383.3	+1	reviewed	p.H557	1.000	98	0%	26	50%	-	-	-	-	-	NULL
HPS3	84343	genome.wustl.edu	37	3	148881676	148881676	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032383.3	+1	reviewed	p.V843	0.913	149	0.7%	41	34.1%	-	-	-	-	-	NULL
CP	1356	genome.wustl.edu	37	3	148930303	148930303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000096.3	-1	reviewed	p.K110I	1.000	159	0%	62	27.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3
ANKUB1	389161	genome.wustl.edu	37	3	149485641	149485641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144960.1	-1	predicted	p.K270Q	0.818	93	0%	27	48.1%	-	-	benign(0.01)	tolerated(0.16)	neutral(0.060)	superfamily_Ankyrin repeat
TMEM183B	653659	genome.wustl.edu	37	3	149700178	149700178	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079809.1	-1	validated	p.P306	0.978	239	0%	341	37.5%	-	-	-	-	-	NULL
FAM194A	131831	genome.wustl.edu	37	3	150396211	150396211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152394.3	-1	validated	p.R414	0.000	126	0%	39	38.5%	-	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	150877683	150877683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053002.4	+1	reviewed	p.R301H	1.000	74	0%	73	38.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MED12L	116931	genome.wustl.edu	37	3	150877702	150877702	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053002.4	+1	reviewed	p.S307	0.881	74	0%	75	41.3%	-	-	-	-	-	NULL
P2RY14	9934	genome.wustl.edu	37	3	150931217	150931217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001081455.1	-1	reviewed	p.F296L	1.000	122	0%	53	39.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Family A G protein-coupled receptor-like
P2RY14	9934	genome.wustl.edu	37	3	150932039	150932039	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001081455.1	-1	reviewed	p.Q22	0.001	246	0%	47	36.2%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
IGSF10	285313	genome.wustl.edu	37	3	151154632	151154632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178822.4	-1	validated	p.A2573T	0.004	57	0%	35	25.7%	-	-	benign(0.187)	tolerated(0.11)	neutral(0.289)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151163911	151163911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178822.4	-1	validated	p.K1286N	0.000	568	0%	283	33.9%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
AADAC	13	genome.wustl.edu	37	3	151538232	151538232	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001086.2	+1	reviewed	p.V141	0.918	130	0%	49	30.6%	-	-	-	-	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
GPR149	344758	genome.wustl.edu	37	3	154145382	154145382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001038705.1	-1	provisional	p.R366H	1.000	56	0%	75	29.3%	-	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
MME	4311	genome.wustl.edu	37	3	154889950	154889950	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000902.3	+1	reviewed	p.L675	0.998	169	0%	41	48.8%	-	-	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
PLCH1	23007	genome.wustl.edu	37	3	155203157	155203157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130960.1	-1	validated	p.E996*	0.989	94	1.1%	97	38.1%	-	-	-	-	-	NULL
KCNAB1	7881	genome.wustl.edu	37	3	156175302	156175302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172160.2	+1	reviewed	p.E140K	0.995	254	0%	64	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
KCNAB1	7881	genome.wustl.edu	37	3	156192571	156192571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172160.2	+1	reviewed	p.V207A	1.000	135	0%	35	25.7%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
KCNAB1	7881	genome.wustl.edu	37	3	156241617	156241617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172160.2	+1	reviewed	p.C321Y	1.000	124	0%	55	34.5%	-	-	benign(0.064)	tolerated(0.8)	neutral(0.005)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TIPARP	25976	genome.wustl.edu	37	3	156395884	156395884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015508.4	+1	reviewed	p.R133Q	0.988	105	0%	108	11.1%	-	-	benign(0)	tolerated(1)	-	NULL
ENSG00000197980	0	genome.wustl.edu	37	3	156547145	156547145	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440145	+1	known	p.A9	0.766	158	0%	168	47%	-	-	-	-	-	NULL
LEKR1	389170	genome.wustl.edu	37	3	156745952	156745952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004316.2	+1	validated	p.E173*	0.969	56	0%	21	38.1%	-	-	-	-	-	NULL
VEPH1	79674	genome.wustl.edu	37	3	157082097	157082097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024621.2	-1	validated	p.F444L	1.000	156	0%	50	46%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
GFM1	85476	genome.wustl.edu	37	3	158364641	158364641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024996.5	+1	reviewed	p.N159K	0.864	242	0%	201	38.8%	-	-	benign(0.27)	tolerated(0.13)	neutral(0.282)	HMMPfam_GTP_EFTU,superfamily_SSF52540
MFSD1	64747	genome.wustl.edu	37	3	158539860	158539860	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022736.2	+1	validated	p.C336	1.000	164	0%	51	31.4%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SCHIP1	29970	genome.wustl.edu	37	3	159583971	159583971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014575.2	+1	provisional	p.E260G	1.000	131	0%	35	28.6%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_SCHIP-1
IFT80	57560	genome.wustl.edu	37	3	160000393	160000393	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020800.1	-1	validated	p.I463	0.985	77	0%	24	33.3%	-	-	-	-	-	superfamily_Cyt_cd1_haem_C
SMC4	10051	genome.wustl.edu	37	3	160120572	160120572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002800.1	+1	validated	p.S143T	0.999	131	0%	198	33.3%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160143906	160143906	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002800.1	+1	validated	p.E841	1.000	70	0%	34	26.5%	-	-	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OTOL1	131149	genome.wustl.edu	37	3	161221654	161221654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080440.1	+1	provisional	p.Y453C	1.000	50	0%	14	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
SI	6476	genome.wustl.edu	37	3	164700113	164700113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001041.3	-1	reviewed	p.G1778V	0.010	282	0%	45	33.3%	-	-	benign(0.208)	tolerated(0.15)	neutral(0.261)	NULL
SI	6476	genome.wustl.edu	37	3	164792429	164792429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001041.3	-1	reviewed	p.A49T	0.000	110	0%	29	37.9%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164908564	164908564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014926.2	-1	validated	p.L19I	1.000	166	0.6%	109	51.4%	-	-	benign(0.176)	tolerated(0.06)	neutral(0.339)	NULL
BCHE	590	genome.wustl.edu	37	3	165491209	165491209	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000055.2	-1	reviewed	p.N590	0.655	270	0%	64	35.9%	-	-	-	-	-	HMMPfam_AChE_tetra
WDR49	151790	genome.wustl.edu	37	3	167322202	167322202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453925	-1	known	p.N50T	0.069	134	0%	44	43.2%	-	-	possibly_damaging(0.647)	tolerated(0.22)	neutral(0.269)	HMMSmart_SM00320
MECOM	2122	genome.wustl.edu	37	3	168849232	168849232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000494292	-1	known	p.A200T	1.000	74	0%	33	42.4%	-	-	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	NULL
PHC3	80012	genome.wustl.edu	37	3	169889148	169889148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000497658	-1	known	p.N131H	0.004	47	0%	30	50%	-	-	possibly_damaging(0.634)	tolerated(0.07)	deleterious(0.541)	NULL
CLDN11	5010	genome.wustl.edu	37	3	170150374	170150374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005602.5	+1	reviewed	p.V152M	1.000	137	0%	76	43.4%	-	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_PMP22_Claudin
RPL22L1	200916	genome.wustl.edu	37	3	170584225	170584225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099645.1	-1	validated	p.E105K	1.000	98	0%	51	29.4%	-	-	benign(0.088)	tolerated(0.09)	neutral(0.303)	HMMPfam_Ribosomal_L22e
TNIK	23043	genome.wustl.edu	37	3	170797362	170797362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015028.2	-1	validated	p.K1131N	1.000	326	0%	76	31.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CNH,HMMSmart_SM00036
PLD1	5337	genome.wustl.edu	37	3	171405368	171405368	+	Missense_Mutation	SNP	C	C	T	rs187570378	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002662.3	-1	validated	p.A516T	0.070	115	0%	36	33.3%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	superfamily_Phospholipase D/nuclease
NLGN1	22871	genome.wustl.edu	37	3	173999000	173999000	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014932.2	+1	reviewed	p.P793	1.000	210	0%	63	36.5%	-	-	-	-	-	NULL
NAALADL2	254827	genome.wustl.edu	37	3	175293915	175293915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207015.2	+1	validated	p.F580	1.000	124	0%	29	24.1%	-	-	-	-	-	superfamily_Zn-dependent exopeptidases
TBL1XR1	79718	genome.wustl.edu	37	3	176744169	176744169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024665.4	-1	reviewed	p.D504Y	1.000	269	0%	112	41.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_WD40,superfamily_WD40_like
TBL1XR1	79718	genome.wustl.edu	37	3	176756102	176756102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024665.4	-1	reviewed	p.T349M	1.000	257	0%	61	32.8%	-	-	benign(0.43)	tolerated(0.06)	neutral(0.463)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PIK3CA	5290	genome.wustl.edu	37	3	178916728	178916728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006218.2	+1	reviewed	p.E39K	1.000	63	0%	40	32.5%	-	-	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178937461	178937461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006218.2	+1	reviewed	p.R617W	0.817	103	0%	22	45.5%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
MRPL47	57129	genome.wustl.edu	37	3	179320488	179320488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020409.2	-1	reviewed	p.E66*	1.000	125	0%	95	34.7%	-	-	-	-	-	HMMPfam_MRP-L47
USP13	8975	genome.wustl.edu	37	3	179483571	179483571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003940.2	+1	validated	p.N783T	0.998	182	0%	117	40.2%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_UCH,superfamily_SSF54001
PEX5L	51555	genome.wustl.edu	37	3	179526066	179526066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016559.1	-1	provisional	p.R504	1.000	93	0%	83	41%	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
CCDC39	339829	genome.wustl.edu	37	3	180320780	180320780	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000473854	-1	known	e5-1	0.875	108	0%	151	39.1%	-	-	benign(0.313)	deleterious(0.01)	deleterious(0.503)	-
CCDC39	339829	genome.wustl.edu	37	3	180361997	180361997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181426.1	-1	validated	p.K526Q	0.994	325	0.3%	147	29.9%	-	-	probably_damaging(0.983)	tolerated(0.49)	neutral(0.440)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182584109	182584109	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000498086	+1	known	p.R300K	1.000	77	0%	22	40.9%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
MCF2L2	23101	genome.wustl.edu	37	3	182923730	182923730	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015078.2	-1	validated	p.E940*	1.000	138	0%	60	36.7%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MCF2L2	23101	genome.wustl.edu	37	3	182946121	182946121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015078.2	-1	validated	p.E693D	0.424	123	0%	64	28.1%	-	-	benign(0.166)	tolerated(1)	neutral(0.015)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
MCF2L2	23101	genome.wustl.edu	37	3	183027574	183027574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015078.2	-1	validated	p.G348V	0.998	117	0%	84	33.3%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00150,superfamily_Spectrin repeat
MCF2L2	23101	genome.wustl.edu	37	3	183097191	183097191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015078.2	-1	validated	p.G57R	1.000	80	0%	45	28.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516
KLHL6	89857	genome.wustl.edu	37	3	183209811	183209811	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130446.2	-1	validated	p.C590	0.507	27	0%	43	46.5%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL6	89857	genome.wustl.edu	37	3	183210347	183210347	+	Missense_Mutation	SNP	G	G	A	rs183753852	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130446.2	-1	validated	p.A500V	0.864	189	0%	232	33.2%	-	-	benign(0.139)	deleterious(0.04)	neutral(0.361)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL6	89857	genome.wustl.edu	37	3	183273288	183273288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130446.2	-1	validated	p.A52T	0.967	184	0%	123	39.8%	-	-	benign(0)	tolerated(0.86)	neutral(0.001)	superfamily_BTB/POZ_fold
YEATS2	55689	genome.wustl.edu	37	3	183504074	183504074	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000432781	+1	known	p.R152W	0.965	38	0%	42	35.7%	-	-	-	-	-	NULL
PARL	55486	genome.wustl.edu	37	3	183560176	183560176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018622.5	-1	reviewed	p.A223T	1.000	98	0%	48	43.8%	-	-	benign(0.338)	tolerated(0.12)	neutral(0.367)	HMMPfam_Rhomboid
ABCC5	10057	genome.wustl.edu	37	3	183682989	183682989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005688.2	-1	reviewed	p.S672N	1.000	59	0%	35	48.6%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC5	10057	genome.wustl.edu	37	3	183689357	183689357	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005688.2	-1	reviewed	p.I585	0.080	97	0%	72	11.1%	-	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF2B5	8893	genome.wustl.edu	37	3	183858264	183858264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003907.2	+1	reviewed	p.S301F	1.000	105	0%	99	35.4%	-	-	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	superfamily_SSF53448
DVL3	1857	genome.wustl.edu	37	3	183887987	183887987	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004423.3	+1	reviewed	p.S564	0.981	24	0%	92	37%	-	-	-	-	-	NULL
AP2M1	1173	genome.wustl.edu	37	3	183898713	183898713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004068.3	+1	reviewed	p.R169H	1.000	146	0%	220	34.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_1
ECE2	9718	genome.wustl.edu	37	3	183994707	183994707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014693.3	+1	validated	p.L170	0.086	38	0%	91	38.5%	-	-	-	-	-	NULL
ECE2	9718	genome.wustl.edu	37	3	183996329	183996329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014693.3	+1	validated	p.R385I	1.000	38	0%	69	29%	-	-	benign(0.119)	deleterious(0.03)	neutral(0.374)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
EIF4G1	1981	genome.wustl.edu	37	3	184041244	184041244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182917.3	+1	reviewed	p.R713C	0.998	85	0%	158	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM131A	131408	genome.wustl.edu	37	3	184059753	184059753	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144635.4	+1	validated	p.K44	0.013	191	0%	323	36.8%	-	-	-	-	-	NULL
POLR2H	5437	genome.wustl.edu	37	3	184085993	184085993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006232.2	+1	reviewed	p.L122F	1.000	89	0%	111	27.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb8,HMMSmart_SM00658,superfamily_Nucleic acid-binding proteins
THPO	7066	genome.wustl.edu	37	3	184090467	184090467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000460.2	-1	reviewed	p.P299L	0.003	392	0%	441	33.8%	-	-	possibly_damaging(0.65)	deleterious(0.05)	deleterious(0.574)	NULL
CHRD	8646	genome.wustl.edu	37	3	184100202	184100202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003741.2	+1	reviewed	p.P242H	1.000	113	0%	237	37.6%	-	-	benign(0.225)	tolerated(0.22)	neutral(0.065)	HMMPfam_CHRD,HMMSmart_SM00754
CHRD	8646	genome.wustl.edu	37	3	184100517	184100517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003741.2	+1	reviewed	p.H313Y	1.000	77	0%	130	33.8%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_CHRD,HMMSmart_SM00754
CHRD	8646	genome.wustl.edu	37	3	184105191	184105191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003741.2	+1	reviewed	p.R793W	1.000	25	0%	56	35.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_VWC,HMMSmart_SM00214
C3orf70	285382	genome.wustl.edu	37	3	184801260	184801260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025266.1	-1	predicted	p.Q96H	1.000	59	0%	26	30.8%	-	-	possibly_damaging(0.926)	tolerated(0.12)	deleterious(0.635)	NULL
IGF2BP2	10644	genome.wustl.edu	37	3	185367192	185367192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006548.4	-1	reviewed	p.T531N	1.000	68	0%	79	24.1%	-	-	benign(0.075)	tolerated(0.72)	neutral(0.007)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
IGF2BP2	10644	genome.wustl.edu	37	3	185369907	185369907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006548.4	-1	reviewed	p.T479I	1.000	74	0%	65	38.5%	-	-	possibly_damaging(0.539)	tolerated(0.11)	neutral(0.454)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TRA2B	6434	genome.wustl.edu	37	3	185635510	185635510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004593.2	-1	validated	p.R287H	1.000	207	0%	92	26.1%	-	-	unknown(0)	deleterious(0)	-	NULL
DGKG	1608	genome.wustl.edu	37	3	185985521	185985521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001346.2	-1	reviewed	p.L388I	0.999	68	0%	77	40.3%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_Cysteine-rich domain
KNG1	3827	genome.wustl.edu	37	3	186435438	186435438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102416.2	+1	reviewed	p.A36D	1.000	96	0%	175	42.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
MASP1	5648	genome.wustl.edu	37	3	186944288	186944288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001879.5	-1	reviewed	p.A488T	0.635	154	0%	108	41.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
BCL6	604	genome.wustl.edu	37	3	187443345	187443345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130845.1	-1	reviewed	p.R594Q	1.000	147	0.7%	229	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BCL6	604	genome.wustl.edu	37	3	187446173	187446173	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130845.1	-1	reviewed	p.Q505	1.000	50	0%	67	29.9%	-	-	-	-	-	NULL
TPRG1	285386	genome.wustl.edu	37	3	189038563	189038563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198485.3	+1	validated	p.R261H	1.000	116	0%	23	26.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TP63	8626	genome.wustl.edu	37	3	189455532	189455532	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003722.4	+1	reviewed	p.F22	0.906	100	0%	35	34.3%	-	-	-	-	-	NULL
TP63	8626	genome.wustl.edu	37	3	189455576	189455576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003722.4	+1	reviewed	p.R37Q	1.000	120	0%	36	36.1%	-	-	possibly_damaging(0.855)	deleterious(0.02)	deleterious(0.713)	NULL
TP63	8626	genome.wustl.edu	37	3	189526189	189526189	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003722.4	+1	reviewed	p.Q151	1.000	170	0%	165	36.4%	-	-	-	-	-	NULL
LEPREL1	55214	genome.wustl.edu	37	3	189702340	189702340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018192.3	-1	validated	p.R410W	0.858	236	0%	88	34.1%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
CCDC50	152137	genome.wustl.edu	37	3	191047493	191047493	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178335.2	+1	reviewed	p.K10	1.000	14	0%	26	53.8%	-	-	-	-	-	NULL
CCDC50	152137	genome.wustl.edu	37	3	191075835	191075835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178335.2	+1	reviewed	p.H54R	1.000	79	0%	23	39.1%	-	-	benign(0.109)	tolerated(0.63)	neutral(0.012)	NULL
HRASLS	57110	genome.wustl.edu	37	3	192973503	192973503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020386.3	+1	validated	p.E22K	1.000	161	0%	40	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GP5	2814	genome.wustl.edu	37	3	194117962	194117962	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004488.2	-1	validated	p.G350	0.007	4	0.000	8	0.500	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
ATP13A3	79572	genome.wustl.edu	37	3	194126757	194126757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024524.3	-1	validated	p.A1191V	1.000	319	0%	203	32%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ATP13A3	79572	genome.wustl.edu	37	3	194134537	194134537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024524.3	-1	validated	p.T1145N	0.157	122	0%	56	41.1%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_Calcium ATPase transmembrane domain M
ATP13A3	79572	genome.wustl.edu	37	3	194162050	194162050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024524.3	-1	validated	p.A567D	1.000	129	0%	49	38.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
APOD	347	genome.wustl.edu	37	3	195300790	195300790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001647.3	-1	reviewed	p.G59E	1.000	185	0%	120	47.5%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	superfamily_Lipocalins,HMMPfam_Lipocalin_2
MUC20	200958	genome.wustl.edu	37	3	195451792	195451792	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152673.2	+1	reviewed	p.I106	0.000	81	0%	87	27.6%	-	-	-	-	-	NULL
MUC20	200958	genome.wustl.edu	37	3	195453324	195453324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152673.2	+1	reviewed	p.S446N	0.003	69	0%	80	37.5%	-	-	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	NULL
MUC4	4585	genome.wustl.edu	37	3	195489789	195489789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018406.5	-1	reviewed	p.A4633S	0.040	18	0%	39	25.6%	-	-	possibly_damaging(0.507)	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC4	4585	genome.wustl.edu	37	3	195495926	195495926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018406.5	-1	reviewed	p.R4371H	0.000	39	0%	81	35.8%	-	-	possibly_damaging(0.733)	tolerated(0.23)	neutral(0.309)	HMMPfam_NIDO,HMMSmart_SM00539
MUC4	4585	genome.wustl.edu	37	3	195511050	195511050	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018406.5	-1	reviewed	p.G2467	0.365	1196	0%	1089	10.4%	-	-	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195512820	195512820	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018406.5	-1	reviewed	p.D1877	0.009	1529	0.1%	1361	13.4%	-	-	-	-	-	NULL
SDHAP1	255812	genome.wustl.edu	37	3	195702575	195702575	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427841	-1	known	NULL	1.000	45	0%	58	12.1%	-	-	-	-	-	-
WDR53	348793	genome.wustl.edu	37	3	196288025	196288025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182627.1	-1	provisional	p.L108M	1.000	209	0%	165	10.9%	-	-	possibly_damaging(0.814)	tolerated(0.19)	neutral(0.357)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MFI2	4241	genome.wustl.edu	37	3	196735782	196735782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005929.4	-1	reviewed	p.Y527C	0.992	123	0%	201	12.4%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
MFI2	4241	genome.wustl.edu	37	3	196744033	196744033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005929.4	-1	reviewed	p.V281M	0.999	12	0%	25	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II
MFI2	4241	genome.wustl.edu	37	3	196749912	196749912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005929.4	-1	reviewed	p.R187H	0.997	26	0%	73	34.2%	-	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
DLG1	1739	genome.wustl.edu	37	3	196888600	196888600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004087.2	-1	validated	p.A165S	1.000	134	0%	82	29.3%	-	-	benign(0.059)	tolerated(0.07)	neutral(0.323)	HMMPfam_MAGUK_N_PEST
BDH1	622	genome.wustl.edu	37	3	197238981	197238981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004051.4	-1	reviewed	p.G273C	1.000	111	0%	166	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-bd
KIAA0226	9711	genome.wustl.edu	37	3	197408018	197408018	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000413360	-1	known	p.A766T	1.000	62	0%	68	39.7%	-	-	-	-	-	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197408067	197408067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145642.2	-1	validated	p.P743H	1.000	69	0%	70	40%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FYTTD1	84248	genome.wustl.edu	37	3	197500335	197500335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032288.6	+1	validated	p.R187C	1.000	122	0%	118	39%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	HMMPfam_FYTT
LMLN	89782	genome.wustl.edu	37	3	197687231	197687231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136049.2	+1	reviewed	p.L47F	0.171	17	0%	36	47.2%	-	-	benign(0.189)	deleterious(0)	neutral(0.462)	NULL
ZNF732	654254	genome.wustl.edu	37	4	265585	265585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137608.1	-1	provisional	p.R354I	0.159	91	0%	75	36%	-	-	benign(0.041)	tolerated(0.42)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667
ZNF732	654254	genome.wustl.edu	37	4	266087	266087	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137608.1	-1	provisional	p.G187*	0.527	250	0%	174	12.6%	-	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667
MIR571	693156	genome.wustl.edu	37	4	344001	344001	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000384910	+1	known	NULL	0.073	162	0%	92	30.4%	-	-	-	-	-	-
ZNF721	170960	genome.wustl.edu	37	4	435883	435883	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133474.2	-1	validated	p.T791	0.000	147	0%	64	25%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	436358	436358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133474.2	-1	validated	p.K633T	0.056	320	0%	101	34.7%	-	-	possibly_damaging(0.839)	tolerated(0.39)	neutral(0.337)	superfamily_C2H2 and C2HC zinc fingers
PIGG	54872	genome.wustl.edu	37	4	499562	499562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127178.1	+1	validated	p.S139Y	1.000	69	0%	96	43.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Alkaline phosphatase-like
PDE6B	5158	genome.wustl.edu	37	4	661650	661650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000283.3	+1	reviewed	p.F786L	0.988	116	0%	216	44.4%	-	-	benign(0.046)	tolerated(0.52)	neutral(0.011)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
ATP5I	521	genome.wustl.edu	37	4	667145	667145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007100.2	-1	reviewed	p.E46G	1.000	573	0%	840	34.5%	-	-	possibly_damaging(0.638)	deleterious(0.02)	deleterious(0.607)	HMMPfam_ATP-synt_E
MFSD7	84179	genome.wustl.edu	37	4	678565	678565	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032219.2	-1	provisional	p.P222	0.958	14	0%	25	28%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PCGF3	10336	genome.wustl.edu	37	4	738424	738424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006315.4	+1	reviewed	p.A137V	0.038	73	0%	147	40.1%	-	-	benign(0.011)	tolerated(0.31)	neutral(0.028)	NULL
GAK	2580	genome.wustl.edu	37	4	860972	860972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005255.2	-1	validated	p.D882N	0.991	13	0%	27	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM175	84286	genome.wustl.edu	37	4	941903	941903	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032326.2	+1	provisional	e2-1	1.000	216	0%	411	40.4%	-	-	-	-	-	-
SLC26A1	10861	genome.wustl.edu	37	4	973266	973266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_134425.1	-1	reviewed	p.Q201H	0.364	192	0%	366	36.6%	-	-	benign(0.066)	-	-	NULL
IDUA	3425	genome.wustl.edu	37	4	995733	995733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453894	+1	known	p.A239T	0.000	21	0%	42	35.7%	-	-	unknown(0)	-	-	HMMPfam_Glyco_hydro_39
IDUA	3425	genome.wustl.edu	37	4	996009	996009	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453894	+1	known	p.R331*	0.000	35	0%	74	13.5%	-	-	-	-	-	HMMPfam_Glyco_hydro_39
WHSC1	7468	genome.wustl.edu	37	4	1902461	1902461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042424.2	+1	reviewed	p.I27N	0.994	41	0%	43	34.9%	-	-	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1957783	1957783	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042424.2	+1	reviewed	p.E917*	1.000	89	0%	157	42%	-	-	-	-	-	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
WHSC2	7469	genome.wustl.edu	37	4	1989708	1989708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005663.3	-1	reviewed	p.R202W	1.000	15	0%	36	22.2%	-	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	NULL
ZFYVE28	57732	genome.wustl.edu	37	4	2307145	2307145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020972.2	-1	validated	p.P308S	0.479	20	0%	37	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2695559	2695559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003704.3	+1	validated	p.P726L	0.788	45	0%	41	39%	-	-	benign(0.147)	deleterious(0.03)	neutral(0.378)	NULL
TNIP2	79155	genome.wustl.edu	37	4	2744128	2744128	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024309.3	-1	validated	p.Q382	0.001	26	0%	43	39.5%	-	-	-	-	-	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2829399	2829399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122681.1	+1	reviewed	p.E195G	0.641	28	0%	47	38.3%	-	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2833696	2833696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122681.1	+1	reviewed	p.E466A	0.815	17	0%	47	36.2%	-	-	possibly_damaging(0.803)	deleterious(0.02)	deleterious(0.685)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RGS12	6002	genome.wustl.edu	37	4	3344679	3344679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198229.2	+1	reviewed	p.R633W	0.008	155	0%	143	37.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RGS12	6002	genome.wustl.edu	37	4	3419135	3419135	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198229.2	+1	reviewed	p.S876	0.979	34	0%	73	28.8%	-	-	-	-	-	NULL
HGFAC	3083	genome.wustl.edu	37	4	3445845	3445845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001528.2	+1	reviewed	p.H185Q	0.901	9	0.000	37	0.486	-	-	probably_damaging(0.985)	tolerated(0.26)	neutral(0.466)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
HGFAC	3083	genome.wustl.edu	37	4	3445862	3445862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001528.2	+1	reviewed	p.A191V	0.069	9	0.000	36	0.278	-	-	benign(0.049)	tolerated(0.17)	neutral(0.062)	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,superfamily_SSF57196
HGFAC	3083	genome.wustl.edu	37	4	3449357	3449357	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001528.2	+1	reviewed	p.L498	0.441	7	0.000	21	0.381	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
OTOP1	133060	genome.wustl.edu	37	4	4214665	4214665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177998.1	-1	provisional	p.G157V	1.000	55	0%	39	12.8%	-	-	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	HMMPfam_DUF270
OTOP1	133060	genome.wustl.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs140419016	byCluster;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	CCACAGCAG	CCACAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177998.1	-1	provisional	p.LLW104in_frame_del	1.000:1.000:1.000:0.995:0.999:0.998:0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZBTB49	166793	genome.wustl.edu	37	4	4304245	4304245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145291.3	+1	validated	p.A228T	0.002	54	0%	28	46.4%	-	-	benign(0)	tolerated(1)	-	NULL
STX18	53407	genome.wustl.edu	37	4	4436530	4436530	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000503861	-1	known	p.R157*	0.139	290	0.3%	173	37%	-	-	-	-	-	NULL
EVC	2121	genome.wustl.edu	37	4	5735121	5735121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153717.2	+1	reviewed	p.L221M	0.852	237	0%	122	47.5%	-	-	unknown(0)	deleterious(0.05)	-	NULL
CRMP1	1400	genome.wustl.edu	37	4	5837779	5837779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014809.1	-1	reviewed	p.A496T	0.997	65	0%	62	45.2%	-	-	benign(0.166)	deleterious(0.01)	neutral(0.421)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP1	152789	genome.wustl.edu	37	4	6037764	6037764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099433.1	-1	validated	p.A749V	0.996	10	0%	21	42.9%	-	-	benign(0.042)	tolerated(0.2)	neutral(0.052)	NULL
WFS1	7466	genome.wustl.edu	37	4	6296740	6296740	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000506362	+1	known	p.A106	0.000	15	0%	41	39%	-	-	benign(0.083)	tolerated(0.26)	neutral(0.040)	NULL
WFS1	7466	genome.wustl.edu	37	4	6303235	6303235	+	Silent	SNP	C	C	A	rs71524359		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006005.3	+1	reviewed	p.P571	0.004	50	0%	115	25.2%	-	-	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6863444	6863444	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100590.1	+1	validated	p.V445	1.000	50	0%	29	48.3%	-	-	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6864097	6864097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100590.1	+1	validated	p.S663Y	1.000	75	0%	33	54.5%	-	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
CCDC96	257236	genome.wustl.edu	37	4	7044269	7044269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153376.2	-1	validated	p.A133T	0.000	12	0%	24	62.5%	-	-	unknown(0)	tolerated(0.2)	-	NULL
TADA2B	93624	genome.wustl.edu	37	4	7056185	7056185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152293.2	+1	validated	p.A223T	1.000	20	0%	49	46.9%	-	-	possibly_damaging(0.722)	tolerated(0.09)	deleterious(0.558)	NULL
ABLIM2	84448	genome.wustl.edu	37	4	7994609	7994609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130083.1	-1	validated	p.N555T	1.000	88	0%	110	13.6%	-	-	possibly_damaging(0.706)	tolerated(0.08)	deleterious(0.554)	NULL
ABLIM2	84448	genome.wustl.edu	37	4	8010816	8010816	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130083.1	-1	validated	p.S479	0.000	128	0%	165	33.3%	-	-	-	-	-	NULL
METTL19	152992	genome.wustl.edu	37	4	8470105	8470105	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429676	+1	known	p.*412Y	0.003	25	0%	36	44.4%	-	-	-	-	-	NULL
LOC650293	650293	genome.wustl.edu	37	4	8952075	8952075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040071.1	+1	provisional	p.G200E	0.774	225	0%	165	37%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DEFB131	644414	genome.wustl.edu	37	4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040448.2	+1	validated	p.S25Y	0.078	71	0%	38	21.1%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13592034	13592034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148894.2	-1	validated	p.H2729N	0.114	66	0%	25	20%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13600700	13600700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148894.2	-1	validated	p.D2608E	0.000	270	0%	76	48.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13606063	13606063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148894.2	-1	validated	p.R821C	0.993	271	0.4%	121	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81995
CPEB2	132864	genome.wustl.edu	37	4	15009084	15009084	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182485.2	+1	reviewed	p.P169	0.196	114	0%	132	27.3%	-	-	-	-	-	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15518320	15518320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080522.2	+1	reviewed	p.P364S	1.000	74	0%	60	28.3%	-	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
FBXL5	26234	genome.wustl.edu	37	4	15626978	15626978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012161.2	-1	reviewed	p.D583Y	1.000	172	0%	67	32.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RNI-like
CD38	952	genome.wustl.edu	37	4	15780113	15780113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001775.2	+1	validated	p.L26F	0.001	33	0%	85	40%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FGFBP2	83888	genome.wustl.edu	37	4	15964622	15964622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031950.3	-1	reviewed	p.T44I	0.272	18	0%	20	25%	-	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	HMMPfam_FGF-BP1
CLRN2	645104	genome.wustl.edu	37	4	17524648	17524648	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079827.2	+1	reviewed	p.L139	1.000	77	0%	41	41.5%	-	-	-	-	-	NULL
CLRN2	645104	genome.wustl.edu	37	4	17528666	17528666	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079827.2	+1	reviewed	p.I220	0.015	161	0%	96	41.7%	-	-	-	-	-	NULL
LAP3	51056	genome.wustl.edu	37	4	17586696	17586696	+	Missense_Mutation	SNP	G	G	A	rs189190228	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015907.2	+1	validated	p.R214K	0.799	109	0%	89	12.4%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
LAP3	51056	genome.wustl.edu	37	4	17609093	17609093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015907.2	+1	validated	p.D481Y	1.000	154	0%	85	15.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
FAM184B	27146	genome.wustl.edu	37	4	17638232	17638232	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015688.1	-1	validated	p.A901	0.002	48	0%	70	30%	-	-	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17819700	17819700	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022346.3	+1	validated	p.D369	0.924	171	0%	126	14.3%	-	-	-	-	-	superfamily_ARM-type_fold
SLIT2	9353	genome.wustl.edu	37	4	20620524	20620524	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004787.1	+1	provisional	p.P1494	0.001	88	0%	64	40.6%	-	-	-	-	-	HMMSmart_SM00041,PatternScan_CTCK_1
PACRGL	133015	genome.wustl.edu	37	4	20714465	20714465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145048.3	+1	validated	p.E141*	1.000	204	0%	65	26.2%	-	-	-	-	-	HMMPfam_ParcG
PACRGL	133015	genome.wustl.edu	37	4	20715113	20715113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145048.3	+1	validated	p.V187A	0.377	287	0%	101	31.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_ParcG
KCNIP4	80333	genome.wustl.edu	37	4	21699042	21699042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035003.1	-1	reviewed	p.R7W	1.000	119	0%	47	40.4%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
GBA3	57733	genome.wustl.edu	37	4	22737661	22737661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020973.3	+1	validated	p.G39E	1.000	196	0%	54	37%	-	-	benign(0.085)	tolerated(0.22)	neutral(0.048)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
GBA3	57733	genome.wustl.edu	37	4	22749679	22749679	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020973.3	+1	validated	p.V349	0.001	29	0%	24	45.8%	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
PPARGC1A	10891	genome.wustl.edu	37	4	23833188	23833188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013261.3	-1	reviewed	p.P141S	1.000	132	0%	39	25.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LGI2	55203	genome.wustl.edu	37	4	25005709	25005709	+	Missense_Mutation	SNP	G	G	A	rs191824666	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000282970	-1	known	p.S8L	0.994	119	0%	35	25.7%	-	-	unknown(0)	-	-	NULL
TBC1D19	55296	genome.wustl.edu	37	4	26750062	26750062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018317.2	+1	validated	p.R450Q	0.998	184	0%	64	37.5%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ARAP2	116984	genome.wustl.edu	37	4	36126568	36126568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015230.2	-1	reviewed	p.R1221I	1.000	210	0%	40	45%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
KIAA1239	57495	genome.wustl.edu	37	4	37445149	37445149	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144990.1	+1	validated	p.F513	0.305	98	0%	38	39.5%	-	-	-	-	-	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446324	37446324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144990.1	+1	validated	p.A905V	0.121	83	0%	40	30%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
PGM2	55276	genome.wustl.edu	37	4	37846157	37846157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018290.3	+1	validated	p.E298K	1.000	113	0%	55	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGM_PMM_II,superfamily_A-D-PHexomutase_a/b/a-I/II/III
KLF3	51274	genome.wustl.edu	37	4	38698737	38698737	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016531.5	+1	validated	p.C297	1.000	106	0%	34	50%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TLR1	7096	genome.wustl.edu	37	4	38799482	38799482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003263.3	-1	reviewed	p.S324L	0.996	85	0%	38	39.5%	-	-	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	superfamily_L domain-like,superfamily_Outer arm dynein light chain 1
TLR1	7096	genome.wustl.edu	37	4	38799876	38799876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003263.3	-1	reviewed	p.H193Y	0.013	77	0%	44	27.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_L domain-like
WDR19	57728	genome.wustl.edu	37	4	39267745	39267745	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025132.3	+1	reviewed	p.N1082	0.026	102	0%	43	44.2%	-	-	-	-	-	superfamily_TPR-like
WDR19	57728	genome.wustl.edu	37	4	39271596	39271596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025132.3	+1	reviewed	p.G1120D	1.000	141	0%	93	12.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
WDR19	57728	genome.wustl.edu	37	4	39278745	39278745	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025132.3	+1	reviewed	p.I1274	1.000	127	0%	94	27.7%	-	-	-	-	-	NULL
WDR19	57728	genome.wustl.edu	37	4	39279794	39279794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025132.3	+1	reviewed	p.C1295Y	1.000	99	0%	81	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLB	152831	genome.wustl.edu	37	4	39409385	39409385	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175737.3	+1	validated	p.N272	1.000	93	0%	42	33.3%	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
KLB	152831	genome.wustl.edu	37	4	39435909	39435909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175737.3	+1	validated	p.S302F	1.000	76	0%	46	45.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LIAS	11019	genome.wustl.edu	37	4	39474770	39474770	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006859.2	+1	reviewed	p.G335	1.000	187	0%	144	31.2%	-	-	-	-	-	superfamily_SSF102114
UGDH	7358	genome.wustl.edu	37	4	39506055	39506055	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003359.3	-1	reviewed	p.T415	0.685	148	0%	105	28.6%	-	-	-	-	-	HMMPfam_UDPG_MGDP_dh_C,superfamily_UDP-Glc/GDP-Man_DH_C
PDS5A	23244	genome.wustl.edu	37	4	39871079	39871079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100399.1	-1	reviewed	p.T814A	1.000	153	0%	41	34.1%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_ARM repeat
PDS5A	23244	genome.wustl.edu	37	4	39905792	39905792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100399.1	-1	reviewed	p.A418D	1.000	89	0%	60	48.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
N4BP2	55728	genome.wustl.edu	37	4	40123635	40123635	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018177.3	+1	reviewed	p.E1302*	0.014	84	0%	54	31.5%	-	-	-	-	-	NULL
RBM47	54502	genome.wustl.edu	37	4	40440025	40440025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098634.1	-1	validated	p.H296Y	0.819	21	0%	52	28.8%	-	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NSUN7	79730	genome.wustl.edu	37	4	40796462	40796462	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024677.4	+1	validated	p.Q417	1.000	113	0%	94	41.5%	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NSUN7	79730	genome.wustl.edu	37	4	40800894	40800894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024677.4	+1	validated	p.D458A	0.079	153	0%	83	26.5%	-	-	benign(0.013)	tolerated(0.33)	neutral(0.025)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PHOX2B	8929	genome.wustl.edu	37	4	41748282	41748282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003924.3	-1	reviewed	p.A163T	0.953	27	0%	49	14.3%	-	-	unknown(0)	tolerated(0.47)	-	superfamily_Homeodomain-like
TMEM33	55161	genome.wustl.edu	37	4	41945777	41945777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000264452	+1	known	p.S52R	1.000	469	0%	216	36.6%	-	-	unknown(0)	-	-	NULL
DCAF4L1	285429	genome.wustl.edu	37	4	41984889	41984889	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029955.3	+1	validated	p.E360	1.000	68	0%	60	23.3%	-	-	-	-	-	superfamily_WD40 repeat-like
BEND4	389206	genome.wustl.edu	37	4	42127632	42127632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207406.3	-1	validated	p.L372M	0.135	237	0%	144	43.1%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42414958	42414958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006095.2	-1	reviewed	p.T1157M	1.000	164	0%	48	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCTD8	386617	genome.wustl.edu	37	4	44176853	44176853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198353.2	-1	validated	p.R459H	1.000	141	0%	141	34%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
GABRG1	2565	genome.wustl.edu	37	4	46060509	46060509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173536.3	-1	reviewed	p.T252	0.040	165	0%	44	36.4%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRG1	2565	genome.wustl.edu	37	4	46067589	46067589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173536.3	-1	reviewed	p.D112Y	1.000	82	0%	42	26.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA2	2555	genome.wustl.edu	37	4	46263974	46263974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000807.2	-1	reviewed	p.A343V	1.000	155	0%	36	30.6%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA2	2555	genome.wustl.edu	37	4	46314544	46314544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000807.2	-1	reviewed	p.Q149K	1.000	171	0%	33	33.3%	-	-	benign(0.323)	tolerated(0.3)	neutral(0.130)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CWH43	80157	genome.wustl.edu	37	4	49034645	49034645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025087.2	+1	validated	p.E524V	1.000	124	0%	53	39.6%	-	-	probably_damaging(0.992)	tolerated(1)	neutral(0.448)	NULL
LRRC66	339977	genome.wustl.edu	37	4	52860796	52860796	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024611.1	-1	provisional	p.R798	0.000	73	0%	28	17.9%	-	-	-	-	-	NULL
SPATA18	132671	genome.wustl.edu	37	4	52928416	52928416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145263.2	+1	provisional	p.P114T	0.000	66	1.5%	33	36.4%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52945027	52945027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145263.2	+1	provisional	p.L383I	0.971	249	0%	226	35.8%	-	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52948560	52948560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145263.2	+1	provisional	p.R455C	1.000	80	0%	39	12.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP46	64854	genome.wustl.edu	37	4	53468174	53468174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022832.3	-1	validated	p.R257W	1.000	83	1.2%	49	22.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
LOC100288413	100288413	genome.wustl.edu	37	4	53611519	53611519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342451.1	-1	model	p.E57K	0.473	114	0%	107	31.8%	-	-	-	-	-	NULL
SCFD2	152579	genome.wustl.edu	37	4	54231607	54231607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152540.3	-1	validated	p.A168T	0.884	77	0%	95	40%	-	-	possibly_damaging(0.923)	tolerated(0.26)	neutral(0.406)	NULL
FIP1L1	81608	genome.wustl.edu	37	4	54325595	54325595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030917.3	+1	reviewed	p.T588	0.371	51	0%	27	48.1%	-	-	-	-	-	NULL
GSX2	170825	genome.wustl.edu	37	4	54968005	54968005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133267.2	+1	validated	p.S277R	0.982	67	0%	118	37.3%	-	-	benign(0.096)	tolerated(0.06)	neutral(0.330)	NULL
KIT	3815	genome.wustl.edu	37	4	55604706	55604706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000222.2	+1	reviewed	p.V972M	0.026	78	0%	31	38.7%	-	-	benign(0.093)	tolerated(0.14)	neutral(0.257)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56770542	56770542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024924.1	+1	reviewed	p.R856C	1.000	163	0%	41	36.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56818314	56818314	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025009.3	+1	validated	p.E6	1.000	61	0%	78	42.3%	-	-	-	-	-	NULL
SRP72	6731	genome.wustl.edu	37	4	57356508	57356508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006947.3	+1	validated	p.P444S	0.975	127	0%	56	41.1%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_SSF48452
POLR2B	5431	genome.wustl.edu	37	4	57888373	57888373	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000938.1	+1	reviewed	p.E826*	1.000	193	0%	73	19.2%	-	-	-	-	-	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CENPC1	1060	genome.wustl.edu	37	4	68358653	68358653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001812.2	-1	reviewed	p.E785*	0.478	338	0%	95	25.3%	-	-	-	-	-	NULL
STAP1	26228	genome.wustl.edu	37	4	68424542	68424542	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012108.2	+1	reviewed	p.K5	1.000	86	0%	57	40.4%	-	-	-	-	-	NULL
STAP1	26228	genome.wustl.edu	37	4	68447165	68447165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012108.2	+1	reviewed	p.V169A	0.996	213	0%	58	29.3%	-	-	benign(0)	tolerated(1)	-	superfamily_SH2 domain
TMPRSS11D	9407	genome.wustl.edu	37	4	68719799	68719799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004262.2	-1	reviewed	p.R79I	0.001	111	0%	36	22.2%	-	-	probably_damaging(0.979)	tolerated(0.26)	neutral(0.456)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11D	9407	genome.wustl.edu	37	4	68725389	68725389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004262.2	-1	reviewed	p.R6C	0.048	105	0%	18	44.4%	-	-	probably_damaging(0.955)	tolerated(0.06)	deleterious(0.721)	NULL
TMPRSS11F	389208	genome.wustl.edu	37	4	68934361	68934361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207407.2	-1	validated	p.L244I	1.000	46	0%	21	38.1%	-	-	benign(0.243)	tolerated(0.56)	neutral(0.031)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS
TMPRSS11F	389208	genome.wustl.edu	37	4	68934477	68934477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207407.2	-1	validated	p.R205I	0.985	43	0%	19	47.4%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
UGT2B15	7366	genome.wustl.edu	37	4	69536055	69536055	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001076.2	-1	validated	p.L94	0.000	104	0%	37	43.2%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69681828	69681828	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001075.4	+1	validated	p.E31*	0.551	209	0%	38	28.9%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69681921	69681921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001075.4	+1	validated	p.L62I	0.001	180	0%	39	33.3%	-	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69682212	69682212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001075.4	+1	validated	p.L159M	0.845	350	0%	59	42.4%	-	-	possibly_damaging(0.592)	tolerated(0.18)	neutral(0.261)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69696481	69696481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001075.4	+1	validated	p.D491N	1.000	516	0%	102	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT
UGT2A3	79799	genome.wustl.edu	37	4	69817241	69817241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024743.3	-1	validated	p.P80S	0.000	58	0%	12	33.3%	-	-	benign(0.006)	tolerated(0.93)	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B7	7364	genome.wustl.edu	37	4	69978293	69978293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001074.2	+1	validated	p.R477W	0.144	337	0%	301	32.9%	-	-	benign(0.29)	deleterious(0)	deleterious(0.534)	HMMPfam_UDPGT
UGT2B28	54490	genome.wustl.edu	37	4	70146564	70146564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053039.1	+1	provisional	p.L116M	0.000	228	0%	43	32.6%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70350971	70350971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021139.2	-1	validated	p.S422I	0.001	295	0%	51	25.5%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70352375	70352375	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021139.2	-1	validated	p.G348*	0.986	410	0%	100	38%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A1	10941	genome.wustl.edu	37	4	70513300	70513300	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006798.2	-1	validated	p.G21	1.000	95	0%	27	29.6%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1E1	6783	genome.wustl.edu	37	4	70721060	70721060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005420.2	-1	reviewed	p.R77Q	0.116	335	0%	172	39%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSN2	1447	genome.wustl.edu	37	4	70823066	70823066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001891.2	-1	validated	p.E201*	0.011	220	0%	62	37.1%	-	-	-	-	-	HMMPfam_Casein
ENAM	10117	genome.wustl.edu	37	4	71509234	71509234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031889.2	+1	reviewed	p.K697N	0.597	91	0%	42	40.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MOB1B	92597	genome.wustl.edu	37	4	71824608	71824608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173468.2	+1	reviewed	p.K11T	1.000	87	0%	50	42%	-	-	possibly_damaging(0.594)	deleterious(0.02)	deleterious(0.588)	NULL
DCK	1633	genome.wustl.edu	37	4	71888137	71888137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000788.2	+1	reviewed	p.E87D	1.000	140	0%	113	36.3%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	superfamily_SSF52540
SLC4A4	8671	genome.wustl.edu	37	4	72423507	72423507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134742.1	+1	reviewed	p.R948C	1.000	171	0%	31	29%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HCO3_cotransp
GC	2638	genome.wustl.edu	37	4	72622609	72622609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000583.2	-1	reviewed	p.L285H	0.941	79	0%	27	33.3%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
NPFFR2	10886	genome.wustl.edu	37	4	72994473	72994473	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004885.2	+1	reviewed	p.I157	1.000	316	0%	230	34.8%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ANKRD17	26057	genome.wustl.edu	37	4	73957624	73957624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032217.3	-1	reviewed	p.R1907	1.000	136	0%	59	32.2%	-	-	-	-	-	NULL
ANKRD17	26057	genome.wustl.edu	37	4	73964157	73964157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032217.3	-1	reviewed	p.A1552T	1.000	139	0%	110	35.5%	-	-	benign(0.004)	tolerated(1)	-	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74021793	74021793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032217.3	-1	reviewed	p.E265D	1.000	120	0%	65	30.8%	-	-	benign(0.406)	tolerated(0.11)	neutral(0.402)	HMMPfam_Ank,superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74027050	74027050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032217.3	-1	reviewed	p.S188F	1.000	120	0%	62	32.3%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
AFP	174	genome.wustl.edu	37	4	74309095	74309095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134.1	+1	reviewed	p.S216I	0.965	142	0%	87	24.1%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_Serum_albumin,HMMSmart_ALBUMIN
AFP	174	genome.wustl.edu	37	4	74315054	74315054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134.1	+1	reviewed	p.F354C	0.945	144	0%	43	37.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFP	174	genome.wustl.edu	37	4	74318155	74318155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134.1	+1	reviewed	p.E489G	0.376	225	0%	55	32.7%	-	-	benign(0.086)	deleterious(0.01)	neutral(0.412)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFM	173	genome.wustl.edu	37	4	74351626	74351626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001133.2	+1	reviewed	p.Q106H	0.375	109	0%	39	28.2%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
AFM	173	genome.wustl.edu	37	4	74367597	74367597	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001133.2	+1	reviewed	p.C580	0.063	155	0%	29	17.2%	-	-	-	-	-	PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
CXCL5	6374	genome.wustl.edu	37	4	74864018	74864018	+	Silent	SNP	G	G	A	rs187709912	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002994.3	-1	reviewed	p.C49	0.035	130	0%	144	41%	-	-	-	-	-	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
AREGB	727738	genome.wustl.edu	37	4	75482220	75482220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001125684.2	+1	model	p.Q92H	0.012	109	0%	75	13.3%	-	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
RCHY1	25898	genome.wustl.edu	37	4	76434397	76434397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015436.2	-1	reviewed	p.K67T	0.997	102	0%	67	35.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_zf-CHY
PPEF2	5470	genome.wustl.edu	37	4	76817440	76817440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006239.2	-1	reviewed	p.F13L	0.998	189	0%	114	33.3%	-	-	benign(0)	tolerated(0.88)	-	NULL
SDAD1	55153	genome.wustl.edu	37	4	76877225	76877225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018115.2	-1	validated	p.S640L	1.000	559	0%	224	33.5%	-	-	benign(0.07)	tolerated(0.19)	neutral(0.054)	HMMPfam_SDA1
SOWAHB	345079	genome.wustl.edu	37	4	77817767	77817767	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029870.1	-1	provisional	p.P412	0.082	27	0%	57	31.6%	-	-	-	-	-	NULL
CCNI	10983	genome.wustl.edu	37	4	77969732	77969732	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000515468	-1	known	p.R58C	1.000	108	0%	44	22.7%	-	-	-	-	-	NULL
CCNG2	901	genome.wustl.edu	37	4	78085481	78085481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004354.2	+1	reviewed	p.E254K	0.998	52	0%	60	36.7%	-	-	possibly_damaging(0.909)	deleterious(0.05)	deleterious(0.708)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79391216	79391216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025074.6	+1	reviewed	p.L2447F	0.993	104	0%	28	35.7%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
BMP2K	55589	genome.wustl.edu	37	4	79782542	79782542	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198892.1	+1	reviewed	e9-1	1.000	153	0%	25	36%	-	-	-	-	-	-
GK2	2712	genome.wustl.edu	37	4	80329126	80329126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033214.2	-1	validated	p.E77K	0.027	229	0.9%	170	38.2%	-	-	benign(0)	tolerated(0.92)	-	HMMPfam_FGGY_N,superfamily_SSF53067
PRDM8	56978	genome.wustl.edu	37	4	81121304	81121304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099403.1	+1	validated	p.D24Y	1.000	107	0%	184	34.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BMP3	651	genome.wustl.edu	37	4	81952562	81952562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001201.2	+1	reviewed	p.A42T	0.356	9	0.000	27	0.370	-	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
HNRNPD	3184	genome.wustl.edu	37	4	83277987	83277987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031370.2	-1	reviewed	p.R272K	1.000	387	0%	106	32.1%	-	-	benign(0.134)	tolerated(0.16)	neutral(0.071)	superfamily_RNA-binding domain RBD
HNRPDL	9987	genome.wustl.edu	37	4	83350825	83350825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031372.2	-1	reviewed	p.L7F	1.000	14	0%	59	32.2%	-	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
SEC31A	22872	genome.wustl.edu	37	4	83788017	83788017	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000507828	-1	known	p.A23V	0.324	140	0%	83	39.8%	-	-	-	-	-	NULL
THAP9	79725	genome.wustl.edu	37	4	83828981	83828981	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024672.4	+1	validated	p.Y208	0.989	131	0%	94	11.7%	-	-	-	-	-	NULL
THAP9	79725	genome.wustl.edu	37	4	83838842	83838842	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024672.4	+1	validated	p.L493	0.008	89	0%	40	35%	-	-	-	-	-	NULL
COPS4	51138	genome.wustl.edu	37	4	83996583	83996583	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016129.2	+1	reviewed	p.*407W	0.999	147	0%	65	27.7%	-	-	-	-	-	NULL
PLAC8	51316	genome.wustl.edu	37	4	84028958	84028958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130715.1	-1	validated	p.V39	0.997	23	0%	38	34.2%	-	-	-	-	-	HMMPfam_PLAC8
HPSE	10855	genome.wustl.edu	37	4	84231930	84231930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098540.1	-1	validated	p.L263I	1.000	212	0%	101	40.6%	-	-	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	HMMPfam_Glyco_hydro_79n,superfamily_(Trans)glycosidases
HELQ	113510	genome.wustl.edu	37	4	84376635	84376635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133636.2	-1	validated	p.S71F	0.000	87	0%	52	42.3%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
AGPAT9	84803	genome.wustl.edu	37	4	84516026	84516026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032717.3	+1	validated	p.G256E	1.000	288	0%	53	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyltransferase,HMMSmart_PlsC
NKX6-1	4825	genome.wustl.edu	37	4	85419205	85419205	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006168.2	-1	validated	p.S59	0.995	11	0%	17	29.4%	-	-	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87637691	87637691	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080685.2	+1	reviewed	p.R402*	0.922	168	0%	39	30.8%	-	-	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87655550	87655550	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080685.2	+1	reviewed	p.T651	0.136	179	0%	51	27.5%	-	-	-	-	-	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
AFF1	4299	genome.wustl.edu	37	4	88048218	88048218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005935.2	+1	validated	p.S944Y	1.000	177	0%	107	33.6%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_AF-4
AFF1	4299	genome.wustl.edu	37	4	88052983	88052983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005935.2	+1	validated	p.A1040V	0.191	298	0%	111	33.3%	-	-	unknown(0)	tolerated(0.2)	-	HMMPfam_AF-4
HSD17B11	51170	genome.wustl.edu	37	4	88278497	88278497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016245.3	-1	validated	p.G210E	0.997	234	0%	166	30.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-binding Rossmann-fold domains
DSPP	1834	genome.wustl.edu	37	4	88535199	88535199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014208.3	+1	reviewed	p.G462E	1.000	271	0%	95	27.4%	-	-	probably_damaging(0.999)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88535707	88535707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014208.3	+1	reviewed	p.S631	0.982	624	0.2%	197	36%	-	-	-	-	-	NULL
DMP1	1758	genome.wustl.edu	37	4	88584362	88584362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004407.3	+1	reviewed	p.D478Y	0.809	80	0%	56	32.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_DMP1
IBSP	3381	genome.wustl.edu	37	4	88723676	88723676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004967.3	+1	reviewed	p.R24Q	0.884	68	0%	22	36.4%	-	-	benign(0.122)	tolerated(0.07)	neutral(0.329)	HMMPfam_BSP_II
IBSP	3381	genome.wustl.edu	37	4	88733006	88733006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004967.3	+1	reviewed	p.F300L	1.000	56	0%	20	35%	-	-	benign(0.125)	deleterious(0.02)	neutral(0.394)	HMMPfam_BSP_II
ABCG2	9429	genome.wustl.edu	37	4	89042827	89042827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004827.2	-1	reviewed	p.D217Y	1.000	144	0%	41	41.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
HERC5	51191	genome.wustl.edu	37	4	89426989	89426989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016323.2	+1	reviewed	p.A1012V	0.921	51	0%	25	16%	-	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC3	8916	genome.wustl.edu	37	4	89526975	89526975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014606.1	+1	provisional	p.M1L	1.000	138	0%	93	40.9%	-	-	benign(0.005)	deleterious(0)	neutral(0.445)	superfamily_RCC1/BLIP-II
FAM13A	10144	genome.wustl.edu	37	4	89859330	89859330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014883.2	-1	validated	p.I223N	0.999	176	0%	30	43.3%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_RhoGAP,superfamily_Rho_GAP
GPRIN3	285513	genome.wustl.edu	37	4	90169351	90169351	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198281.2	-1	validated	p.R637	0.085	71	0%	35	34.3%	-	-	-	-	-	NULL
MMRN1	22915	genome.wustl.edu	37	4	90856421	90856421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007351.2	+1	reviewed	p.K530N	0.300	67	0%	15	33.3%	-	-	benign(0.406)	tolerated(0.3)	neutral(0.159)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90856927	90856927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007351.2	+1	reviewed	p.H699R	1.000	79	0%	32	34.4%	-	-	possibly_damaging(0.84)	deleterious(0.03)	deleterious(0.686)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90857095	90857095	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007351.2	+1	reviewed	p.I755S	0.000	66	0%	15	60%	-	-	benign(0.073)	deleterious(0.02)	neutral(0.388)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90874482	90874482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007351.2	+1	reviewed	p.E1200D	1.000	92	0%	39	43.6%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
GRID2	2895	genome.wustl.edu	37	4	94690558	94690558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001510.2	+1	validated	p.T853M	1.000	111	0%	28	25%	-	-	benign(0.104)	tolerated(0.1)	neutral(0.294)	NULL
HPGDS	27306	genome.wustl.edu	37	4	95255696	95255696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014485.2	-1	reviewed	p.Y29H	0.979	305	0%	196	34.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_GST_N,superfamily_Thioredoxin-like
PDLIM5	10611	genome.wustl.edu	37	4	95497060	95497060	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006457.3	+1	reviewed	p.S195	0.953	114	0%	51	33.3%	-	-	-	-	-	NULL
BMPR1B	658	genome.wustl.edu	37	4	96070026	96070026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001203.2	+1	reviewed	p.S402G	1.000	152	0%	57	15.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAP1GDS1	5910	genome.wustl.edu	37	4	99313168	99313168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100426.1	+1	validated	p.H193Y	1.000	173	0%	37	32.4%	-	-	possibly_damaging(0.794)	tolerated(0.28)	neutral(0.330)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
RAP1GDS1	5910	genome.wustl.edu	37	4	99338015	99338015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100426.1	+1	validated	p.L296F	1.000	205	0.5%	64	34.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
RAP1GDS1	5910	genome.wustl.edu	37	4	99342406	99342406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100426.1	+1	validated	p.A435V	1.000	174	0%	81	37%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_ARM repeat
METAP1	23173	genome.wustl.edu	37	4	99978954	99978954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015143.2	+1	validated	p.P328S	1.000	364	0%	140	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
ADH4	127	genome.wustl.edu	37	4	100052815	100052815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000670.3	-1	reviewed	p.I228T	0.952	134	0%	48	22.9%	-	-	benign(0.149)	deleterious(0)	neutral(0.458)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
ADH4	127	genome.wustl.edu	37	4	100062755	100062755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000670.3	-1	reviewed	p.V67I	0.911	89	0%	30	30%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	superfamily_GroES-like,HMMPfam_ADH_N
ADH1C	126	genome.wustl.edu	37	4	100264093	100264093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000669.3	-1	reviewed	p.K229N	0.982	411	0%	104	34.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
ADH7	131	genome.wustl.edu	37	4	100348939	100348939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000673.4	-1	reviewed	p.K197N	0.012	155	0%	25	44%	-	-	benign(0.003)	tolerated(1)	-	superfamily_GroES_like,superfamily_NAD(P)-bd
ADH7	131	genome.wustl.edu	37	4	100356224	100356224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000476959	-1	known	p.T13I	0.000	209	0%	49	36.7%	-	-	benign(0.095)	-	-	NULL
DAPP1	27071	genome.wustl.edu	37	4	100774438	100774438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014395.2	+1	validated	p.S141Y	0.959	145	0%	65	43.1%	-	-	possibly_damaging(0.834)	tolerated(0.17)	neutral(0.377)	superfamily_SH2 domain
H2AFZ	3015	genome.wustl.edu	37	4	100869979	100869979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002106.3	-1	reviewed	p.I105S	1.000	171	0%	225	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00414
PPP3CA	5530	genome.wustl.edu	37	4	101950332	101950332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000944.4	-1	validated	p.A454T	1.000	64	0%	26	42.3%	-	-	probably_damaging(0.995)	tolerated(0.35)	deleterious(0.478)	superfamily_Metallo-dependent phosphatases
BANK1	55024	genome.wustl.edu	37	4	102816512	102816512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017935.4	+1	reviewed	p.E318D	1.000	124	0%	51	35.3%	-	-	possibly_damaging(0.862)	tolerated(0.21)	neutral(0.377)	NULL
SLC39A8	64116	genome.wustl.edu	37	4	103188652	103188652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135146.1	-1	reviewed	p.D410Y	1.000	57	0%	27	48.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zip
NFKB1	4790	genome.wustl.edu	37	4	103504110	103504110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003998.3	+1	reviewed	p.R308I	1.000	141	0%	31	16.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ANK,HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
NFKB1	4790	genome.wustl.edu	37	4	103517332	103517332	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003998.3	+1	reviewed	p.G446	0.001	83	0%	20	20%	-	-	-	-	-	superfamily_ANK
NFKB1	4790	genome.wustl.edu	37	4	103527740	103527740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003998.3	+1	reviewed	p.R614C	1.000	212	0%	85	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,superfamily_ANK
MANBA	4126	genome.wustl.edu	37	4	103647809	103647809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005908.3	-1	reviewed	p.Y70C	1.000	156	0.6%	89	30.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Gal_bind_like
CISD2	493856	genome.wustl.edu	37	4	103808505	103808505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008388.3	+1	reviewed	p.A109V	1.000	135	0.7%	64	9.4%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00704,HMMPfam_zf-CDGSH
SLC9B2	133308	genome.wustl.edu	37	4	103966152	103966152	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178833.4	-1	validated	p.G297	0.983	129	0%	62	33.9%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
TACR3	6870	genome.wustl.edu	37	4	104640773	104640773	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001059.1	-1	reviewed	p.D20	0.000	29	0%	47	48.9%	-	-	-	-	-	NULL
ARHGEF38	54848	genome.wustl.edu	37	4	106510529	106510529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017700.1	+1	validated	p.K107N	0.626	128	0%	47	27.7%	-	-	possibly_damaging(0.783)	deleterious(0.03)	deleterious(0.657)	HMMPfam_RhoGEF,superfamily_DH-domain
NPNT	255743	genome.wustl.edu	37	4	106888484	106888484	+	Silent	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033047.2	+1	validated	p.G495	0.908	41	0%	17	35.3%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
DKK2	27123	genome.wustl.edu	37	4	107845774	107845774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014421.2	-1	reviewed	p.G153S	0.742	274	0%	88	33%	-	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
SGMS2	166929	genome.wustl.edu	37	4	108824428	108824428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136257.1	+1	reviewed	p.R205*	0.814	228	0%	43	34.9%	-	-	-	-	-	NULL
AGXT2L1	64850	genome.wustl.edu	37	4	109680942	109680942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031279.3	-1	validated	p.P100S	1.000	141	0%	137	36.5%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
COL25A1	84570	genome.wustl.edu	37	4	109862535	109862535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198721.1	-1	validated	p.R184H	1.000	73	0%	35	37.1%	-	-	unknown(0)	tolerated(0.11)	-	NULL
LOC389217	389217	genome.wustl.edu	37	4	110474797	110474797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001717714.1	-1	model	p.L165I	1.000	19	0%	21	47.6%	-	-	-	-	-	HMMPfam_NAP
LRIT3	345193	genome.wustl.edu	37	4	110790965	110790965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198506.2	+1	validated	p.P309S	0.068	203	0%	67	38.8%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
EGF	1950	genome.wustl.edu	37	4	110914495	110914495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001963.4	+1	reviewed	p.R943C	0.000	125	0%	53	30.2%	-	-	benign(0.015)	tolerated(0.13)	neutral(0.253)	superfamily_SSF57196
EGF	1950	genome.wustl.edu	37	4	110920910	110920910	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001963.4	+1	reviewed	p.H1027	0.000	79	0%	53	34%	-	-	-	-	-	NULL
PITX2	5308	genome.wustl.edu	37	4	111539513	111539513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000325.5	-1	reviewed	p.S248I	1.000	90	0%	147	12.9%	-	-	benign(0.026)	deleterious(0.03)	neutral(0.365)	NULL
C4orf32	132720	genome.wustl.edu	37	4	113108007	113108007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152400.2	+1	validated	p.F104L	1.000	257	0%	91	33%	-	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113506798	113506798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000505019	-1	known	p.L1334V	0.000	218	0%	58	27.6%	-	-	benign(0)	tolerated(1)	-	NULL
ANK2	287	genome.wustl.edu	37	4	114209620	114209620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001148.4	+1	reviewed	p.A752V	1.000	170	0%	82	30.5%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114251539	114251539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001148.4	+1	reviewed	p.R1013K	0.827	61	0%	17	23.5%	-	-	benign(0.004)	tolerated(1)	-	HMMPfam_ZU5
ANK2	287	genome.wustl.edu	37	4	114274469	114274469	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001148.4	+1	reviewed	p.I1565	0.993	87	0%	24	25%	-	-	-	-	-	NULL
CAMK2D	817	genome.wustl.edu	37	4	114435059	114435059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001221.3	-1	reviewed	p.T277I	1.000	101	0%	41	43.9%	-	-	possibly_damaging(0.921)	deleterious(0.02)	deleterious(0.754)	superfamily_Protein kinase-like (PK-like)
CAMK2D	817	genome.wustl.edu	37	4	114680521	114680521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001221.3	-1	reviewed	p.E39*	1.000	95	0%	151	40.4%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
UGT8	7368	genome.wustl.edu	37	4	115544117	115544117	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128174.1	+1	validated	p.P27	1.000	124	0%	64	37.5%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT8	7368	genome.wustl.edu	37	4	115597145	115597145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128174.1	+1	validated	p.R443*	1.000	178	0%	106	31.1%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST3	9348	genome.wustl.edu	37	4	119161689	119161689	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004784.2	+1	reviewed	p.S710*	0.999	75	1.3%	36	16.7%	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRSS12	8492	genome.wustl.edu	37	4	119239704	119239704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003619.2	-1	reviewed	p.A327T	1.000	133	0%	37	40.5%	-	-	possibly_damaging(0.935)	tolerated(0.35)	neutral(0.401)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
PDE5A	8654	genome.wustl.edu	37	4	120423784	120423784	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083.3	-1	reviewed	p.F786L	1.000	111	0%	28	32.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
PRDM5	11107	genome.wustl.edu	37	4	121675722	121675722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018699.2	-1	reviewed	p.R537C	1.000	129	0%	52	42.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRDM5	11107	genome.wustl.edu	37	4	121698373	121698373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018699.2	-1	reviewed	p.T503A	1.000	135	0%	33	27.3%	-	-	benign(0.287)	tolerated(0.36)	neutral(0.108)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
QRFPR	84109	genome.wustl.edu	37	4	122250727	122250727	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198179.2	-1	validated	p.A346	0.843	154	0%	64	43.8%	-	-	-	-	-	superfamily_SSF81321
BBS7	55212	genome.wustl.edu	37	4	122780282	122780282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176824.1	-1	reviewed	p.H131Q	1.000	81	0%	34	32.4%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122853675	122853675	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130698.1	-1	validated	p.Y246	1.000	48	0%	72	27.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KIAA1109	84162	genome.wustl.edu	37	4	123226034	123226034	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015312.3	+1	reviewed	p.R3190*	1.000	101	0%	20	55%	-	-	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123283343	123283343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015312.3	+1	reviewed	p.L4987I	1.000	134	0%	56	32.1%	-	-	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	HMMPfam_FSA_C
SPATA5	166378	genome.wustl.edu	37	4	123857301	123857301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145207.2	+1	validated	p.A442T	1.000	50	0%	24	75%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125590981	125590981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020337.2	-1	validated	p.R1151C	0.989	70	0%	25	36%	-	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	superfamily_ANK
ANKRD50	57182	genome.wustl.edu	37	4	125591853	125591853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020337.2	-1	validated	p.R860I	1.000	142	0%	39	43.6%	-	-	benign(0.081)	tolerated(0.2)	neutral(0.055)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126238715	126238715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.T383	0.000	17	0%	34	29.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126241242	126241242	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.L1226	0.999	48	0%	50	46%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126241552	126241552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.R1329I	1.000	123	0%	109	33%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126329661	126329661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.Y1878N	1.000	134	0%	43	30.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126337702	126337702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.E2315*	1.000	202	0%	49	36.7%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126400929	126400929	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.S4169	1.000	86	0%	35	22.9%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
FAT4	79633	genome.wustl.edu	37	4	126411114	126411114	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.S4379	0.384	102	0%	75	26.7%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FAT4	79633	genome.wustl.edu	37	4	126411741	126411741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024582.4	+1	validated	p.N4588	1.000	141	0%	72	26.4%	-	-	-	-	-	NULL
HSPA4L	22824	genome.wustl.edu	37	4	128703808	128703808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014278.2	+1	provisional	p.T35A	1.000	46	0%	79	20.3%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_HSP70,superfamily_SSF53067
PLK4	10733	genome.wustl.edu	37	4	128807847	128807847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014264.3	+1	reviewed	p.S441Y	0.997	75	0%	59	32.2%	-	-	probably_damaging(0.983)	deleterious(0.05)	deleterious(0.774)	superfamily_Kinase_like
PLK4	10733	genome.wustl.edu	37	4	128811378	128811378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014264.3	+1	reviewed	p.T606I	1.000	61	0%	41	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
PGRMC2	10424	genome.wustl.edu	37	4	129193672	129193672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006320.4	-1	validated	p.A140V	1.000	74	0%	31	19.4%	-	-	benign(0.221)	deleterious(0.02)	neutral(0.405)	HMMPfam_Cyt-b5,superfamily_Cyt_B5
PCDH18	54510	genome.wustl.edu	37	4	138452934	138452934	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019035.3	-1	reviewed	p.N103	1.000	148	0%	42	16.7%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
MAML3	55534	genome.wustl.edu	37	4	140651729	140651729	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000502696	-1	known	p.P68L	0.001	36	0%	58	39.7%	-	-	-	-	-	NULL
MAML3	55534	genome.wustl.edu	37	4	141074475	141074475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018717.4	-1	validated	p.D3N	1.000	6	0.000	7	0.571	-	-	unknown(0)	deleterious(0)	-	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144460077	144460077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003601.2	+1	reviewed	p.D586N	1.000	160	0%	42	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
FREM3	166752	genome.wustl.edu	37	4	144617524	144617524	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000329798	-1	known	p.T1435	0.983	246	0%	233	38.6%	-	-	-	-	-	NULL
GYPB	2994	genome.wustl.edu	37	4	144918706	144918706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002100.3	-1	reviewed	p.R86H	0.001	259	0%	53	18.9%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Glycophorin_A
HHIP	64399	genome.wustl.edu	37	4	145640091	145640091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022475.1	+1	reviewed	p.K581N	1.000	183	0%	50	38%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_Soluble quinoprotein glucose dehydrogenase
ABCE1	6059	genome.wustl.edu	37	4	146041162	146041162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040876.1	+1	reviewed	p.A334V	1.000	121	0%	28	32.1%	-	-	benign(0.313)	tolerated(0.12)	neutral(0.358)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF827	152485	genome.wustl.edu	37	4	146791579	146791579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178835.3	-1	validated	p.P600H	1.000	76	0%	42	38.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF827	152485	genome.wustl.edu	37	4	146823797	146823797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178835.3	-1	validated	p.S205N	1.000	45	0%	38	31.6%	-	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
POU4F2	5458	genome.wustl.edu	37	4	147560512	147560512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004575.2	+1	validated	p.S74G	1.000	12	0%	19	52.6%	-	-	benign(0.025)	tolerated(0.21)	neutral(0.045)	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561818	147561818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004575.2	+1	validated	p.Y363C	1.000	26	0%	53	30.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
EDNRA	1909	genome.wustl.edu	37	4	148407151	148407151	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001957.3	+1	reviewed	p.Y106	1.000	119	0%	100	33%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EDNRA	1909	genome.wustl.edu	37	4	148457080	148457080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001957.3	+1	reviewed	p.P267S	1.000	267	0%	102	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMEM184C	55751	genome.wustl.edu	37	4	148552559	148552559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018241.2	+1	validated	p.L228F	1.000	315	0%	77	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF300
NR3C2	4306	genome.wustl.edu	37	4	149002516	149002516	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000901.4	-1	reviewed	p.P978	0.879	42	0%	34	35.3%	-	-	-	-	-	superfamily_Str_ncl_receptor
NR3C2	4306	genome.wustl.edu	37	4	149356392	149356392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000901.4	-1	reviewed	p.D541N	1.000	152	0%	66	31.8%	-	-	benign(0.175)	deleterious(0)	neutral(0.461)	NULL
DCLK2	166614	genome.wustl.edu	37	4	151170822	151170822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040260.2	+1	validated	p.V687I	1.000	96	0%	164	38.4%	-	-	possibly_damaging(0.729)	tolerated(0.09)	deleterious(0.562)	NULL
LRBA	987	genome.wustl.edu	37	4	151765289	151765289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006726.2	-1	validated	p.D1511A	1.000	74	0%	28	28.6%	-	-	possibly_damaging(0.466)	deleterious(0)	deleterious(0.598)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151792582	151792582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006726.2	-1	validated	p.G761E	1.000	122	0%	51	9.8%	-	-	possibly_damaging(0.84)	tolerated(1)	neutral(0.322)	superfamily_ARM repeat
FBXW7	55294	genome.wustl.edu	37	4	153244092	153244092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033632.2	-1	reviewed	p.R689W	1.000	259	0%	70	27.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320
FBXW7	55294	genome.wustl.edu	37	4	153244185	153244185	+	Nonsense_Mutation	SNP	G	G	A	rs144247898		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033632.2	-1	reviewed	p.R658*	1.000	251	0%	63	38.1%	-	-	-	-	-	HMMSmart_SM00320
TIGD4	201798	genome.wustl.edu	37	4	153692076	153692076	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145720.2	-1	reviewed	p.I27	0.757	209	0%	235	42.6%	-	-	-	-	-	HMMPfam_CENP-B_N,superfamily_Homeodomain-like
TRIM2	23321	genome.wustl.edu	37	4	154216741	154216741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015271.3	+1	validated	p.T355A	1.000	38	0%	35	34.3%	-	-	possibly_damaging(0.573)	tolerated(0.2)	neutral(0.245)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TRIM2	23321	genome.wustl.edu	37	4	154236704	154236704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015271.3	+1	validated	p.K526N	1.000	75	0%	36	41.7%	-	-	benign(0.122)	tolerated(0.34)	neutral(0.033)	HMMPfam_NHL,superfamily_NHL repeat
KIAA0922	23240	genome.wustl.edu	37	4	154523484	154523484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015196.3	+1	validated	p.S815I	1.000	161	0%	41	31.7%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155156633	155156633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017639.3	-1	validated	p.D2602E	0.001	142	0%	39	33.3%	-	-	benign(0)	tolerated(0.93)	-	NULL
DCHS2	54798	genome.wustl.edu	37	4	155219186	155219186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017639.3	-1	validated	p.Q1639K	0.000	76	0%	33	42.4%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155219662	155219662	+	Missense_Mutation	SNP	G	G	A	rs17031394	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017639.3	-1	validated	p.T1480I	0.000	132	0%	55	34.5%	-	-	benign(0.31)	tolerated(0.29)	neutral(0.126)	superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155219845	155219845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017639.3	-1	validated	p.E1419G	0.061	61	0%	21	47.6%	-	-	benign(0.008)	tolerated(0.59)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155253884	155253884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017639.3	-1	validated	p.R660K	1.000	60	0%	78	32.1%	-	-	benign(0.195)	tolerated(1)	neutral(0.018)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FGA	2243	genome.wustl.edu	37	4	155508783	155508783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000508.3	-1	reviewed	p.S131P	0.996	293	0.3%	120	37.5%	-	-	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	HMMPfam_Fib_alpha
GUCY1A3	2982	genome.wustl.edu	37	4	156632198	156632198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000856.4	+1	validated	p.K294T	1.000	111	0%	27	37%	-	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_HNOBA
GUCY1B3	2983	genome.wustl.edu	37	4	156726310	156726310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000857.2	+1	validated	p.P589S	1.000	174	0%	49	30.6%	-	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
CTSO	1519	genome.wustl.edu	37	4	156849523	156849523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001334.2	-1	reviewed	p.G299D	1.000	144	0%	58	12.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
GLRB	2743	genome.wustl.edu	37	4	158091822	158091822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000824.4	+1	reviewed	p.A479V	1.000	141	0%	53	24.5%	-	-	probably_damaging(0.998)	tolerated(0.89)	deleterious(0.474)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
FAM198B	51313	genome.wustl.edu	37	4	159076895	159076895	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031700.2	-1	validated	p.T339	0.998	106	0%	37	45.9%	-	-	-	-	-	NULL
FNIP2	57600	genome.wustl.edu	37	4	159772560	159772560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020840.1	+1	validated	p.R272Q	1.000	110	0%	54	70.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FNIP2	57600	genome.wustl.edu	37	4	159789779	159789779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020840.1	+1	validated	p.R664K	0.001	49	0%	59	47.5%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
FNIP2	57600	genome.wustl.edu	37	4	159825637	159825637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020840.1	+1	validated	p.P1096S	1.000	270	0.7%	81	28.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160253642	160253642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014247.2	+1	validated	p.R482I	1.000	94	0%	27	29.6%	-	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160264241	160264241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014247.2	+1	validated	p.N849S	1.000	255	0%	93	40.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160266325	160266325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014247.2	+1	validated	p.R955W	1.000	106	0%	64	37.5%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Ras_GEF
LOC100287743	100287743	genome.wustl.edu	37	4	164085513	164085513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342475.1	+1	model	p.T8M	0.791	193	1%	235	28.9%	-	-	-	-	-	NULL
TKTL2	84076	genome.wustl.edu	37	4	164393019	164393019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032136.4	-1	validated	p.T623N	0.385	121	0%	121	34.7%	-	-	possibly_damaging(0.846)	deleterious(0.04)	deleterious(0.674)	superfamily_Transketo_C_like
TKTL2	84076	genome.wustl.edu	37	4	164393208	164393208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032136.4	-1	validated	p.V560A	0.832	131	0%	120	42.5%	-	-	possibly_damaging(0.635)	deleterious(0.02)	deleterious(0.605)	HMMPfam_Transketolase_C,superfamily_Transketo_C_like
TRIM60	166655	genome.wustl.edu	37	4	165961530	165961530	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152620.2	+1	reviewed	p.Q102	0.175	102	0%	153	16.3%	-	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850
MSMO1	6307	genome.wustl.edu	37	4	166261494	166261494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006745.3	+1	reviewed	p.T218I	0.026	367	0%	129	13.2%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_FA_hydroxylase
TLL1	7092	genome.wustl.edu	37	4	167012313	167012313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012464.3	+1	reviewed	p.E826*	1.000	100	0%	15	33.3%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SPOCK3	50859	genome.wustl.edu	37	4	167656167	167656167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016950.2	-1	validated	p.D406Y	1.000	470	0%	142	33.8%	-	-	unknown(0)	deleterious(0.02)	-	NULL
DDX60	55601	genome.wustl.edu	37	4	169138143	169138143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017631.5	-1	validated	p.V1694F	0.989	218	0%	35	42.9%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DDX60	55601	genome.wustl.edu	37	4	169176995	169176995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017631.5	-1	validated	p.A1142T	0.000	182	0%	84	26.2%	-	-	benign(0)	tolerated(0.46)	neutral(0.012)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60	55601	genome.wustl.edu	37	4	169206050	169206050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017631.5	-1	validated	p.K494N	0.987	124	0%	56	32.1%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
AADAT	51166	genome.wustl.edu	37	4	171010824	171010824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016228.3	-1	reviewed	p.F6L	0.966	108	0%	181	42%	-	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_PLP-dependent transferases
GALNTL6	442117	genome.wustl.edu	37	4	172735764	172735764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001034845.2	+1	validated	p.M11I	1.000	187	0%	287	33.8%	-	-	benign(0.03)	tolerated(0.44)	neutral(0.014)	NULL
FBXO8	26269	genome.wustl.edu	37	4	175180932	175180932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012180.2	-1	reviewed	p.N125S	1.000	82	0%	19	36.8%	-	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
CEP44	80817	genome.wustl.edu	37	4	175238528	175238528	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040157.2	+1	validated	p.Y389	0.340	38	0%	33	36.4%	-	-	-	-	-	NULL
GPM6A	2823	genome.wustl.edu	37	4	176561949	176561949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005277.3	-1	validated	p.I191M	0.893	173	0%	49	32.7%	-	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_Myelin_PLP,HMMSmart_SM00002
WDR17	116966	genome.wustl.edu	37	4	177036954	177036954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170710.4	+1	reviewed	p.H68R	1.000	89	0%	34	38.2%	-	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
WDR17	116966	genome.wustl.edu	37	4	177100701	177100701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170710.4	+1	reviewed	p.G1314W	1.000	191	0%	69	24.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ASB5	140458	genome.wustl.edu	37	4	177136772	177136772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080874.2	-1	reviewed	p.K323N	1.000	232	0%	62	35.5%	-	-	possibly_damaging(0.646)	tolerated(0.12)	deleterious(0.487)	HMMPfam_SOCS_box
AGA	175	genome.wustl.edu	37	4	178363474	178363474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000027.3	-1	reviewed	p.A19V	0.001	22	0%	26	30.8%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Asparaginase_2
ODZ3	55714	genome.wustl.edu	37	4	183720958	183720958	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080477.1	+1	provisional	p.N2518	1.000	14	0%	24	20.8%	-	-	-	-	-	NULL
LOC100128823	100128823	genome.wustl.edu	37	4	184018938	184018938	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001719637.1	+1	model	p.A31	0.000	10	0%	18	33.3%	-	-	-	-	-	NULL
WWC2	80014	genome.wustl.edu	37	4	184171119	184171119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024949.5	+1	validated	p.S309N	1.000	153	0%	72	19.4%	-	-	probably_damaging(0.955)	tolerated(0.32)	neutral(0.423)	NULL
WWC2	80014	genome.wustl.edu	37	4	184186898	184186898	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024949.5	+1	validated	p.T699	0.764	159	0%	53	30.2%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLDN22	53842	genome.wustl.edu	37	4	184240733	184240733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001111319.1	-1	provisional	p.T213	0.197	159	0%	107	23.4%	-	-	-	-	-	NULL
ING2	3622	genome.wustl.edu	37	4	184431528	184431528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001564.2	+1	validated	p.A89V	1.000	64	0%	71	40.8%	-	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
STOX2	56977	genome.wustl.edu	37	4	184931234	184931234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020225.1	+1	provisional	p.E415*	0.999	89	0%	71	46.5%	-	-	-	-	-	NULL
STOX2	56977	genome.wustl.edu	37	4	184932016	184932016	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000506529	+1	known	p.R31C	0.000	29	0%	35	34.3%	-	-	-	-	-	NULL
ENPP6	133121	genome.wustl.edu	37	4	185038053	185038053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153343.3	-1	validated	p.G271W	1.000	81	1.2%	81	46.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
IRF2	3660	genome.wustl.edu	37	4	185309950	185309950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002199.3	-1	reviewed	p.T338A	0.998	75	0%	53	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLF1IP	79682	genome.wustl.edu	37	4	185650071	185650071	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024629.3	-1	validated	e3+1	1.000	156	0%	158	41.1%	-	-	-	-	-	-
SNX25	83891	genome.wustl.edu	37	4	186283800	186283800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031953.2	+1	validated	p.R793C	1.000	96	0%	46	41.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nexin_C
LRP2BP	55805	genome.wustl.edu	37	4	186299362	186299362	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000505916	-1	known	e1-1	0.883	168	0%	87	27.6%	-	-	-	-	-	-
UFSP2	55325	genome.wustl.edu	37	4	186329436	186329436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018359.3	-1	validated	p.E329*	1.000	198	0%	82	28%	-	-	-	-	-	HMMPfam_Peptidase_C78
CCDC110	256309	genome.wustl.edu	37	4	186379724	186379724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152775.3	-1	validated	p.E673K	0.498	147	0%	82	36.6%	-	-	probably_damaging(0.979)	tolerated(0.29)	neutral(0.451)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186598371	186598371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145673.1	-1	validated	p.V91A	0.000	279	0%	105	40%	-	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186599611	186599611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003603.5	-1	reviewed	p.R20Q	1.000	204	0%	51	43.1%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
F11	2160	genome.wustl.edu	37	4	187201488	187201488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000128.3	+1	reviewed	p.R326H	1.000	166	0%	89	33.7%	-	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1
FAT1	2195	genome.wustl.edu	37	4	187518260	187518260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005245.3	-1	reviewed	p.T4145M	1.000	70	0%	61	31.1%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
FAT1	2195	genome.wustl.edu	37	4	187519219	187519219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005245.3	-1	reviewed	p.P4055L	0.998	28	0%	31	41.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
FAT1	2195	genome.wustl.edu	37	4	187539951	187539951	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005245.3	-1	reviewed	p.R2597*	0.986	68	0%	44	45.5%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628408	187628408	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005245.3	-1	reviewed	p.T858	0.013	132	0%	106	43.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
SDHA	6389	genome.wustl.edu	37	5	228373	228373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004168.2	+1	reviewed	p.R232H	1.000	151	0%	208	38%	-	-	probably_damaging(0.97)	tolerated(0.08)	deleterious(0.712)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
AHRR	57491	genome.wustl.edu	37	5	432995	432995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020731.3	+1	reviewed	p.A371T	0.005	24	0%	50	44%	-	-	possibly_damaging(0.693)	tolerated(0.07)	deleterious(0.567)	NULL
EXOC3	11336	genome.wustl.edu	37	5	453794	453794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007277.4	+1	reviewed	p.R225H	1.000	80	0%	77	26%	-	-	probably_damaging(1)	tolerated(0.6)	deleterious(0.504)	HMMPfam_Sec6
BRD9	65980	genome.wustl.edu	37	5	889761	889761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433367	-1	known	p.P83L	0.941	175	0%	288	36.1%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMSmart_BROMO
SLC12A7	10723	genome.wustl.edu	37	5	1075520	1075520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006598.2	-1	validated	p.A645T	1.000	33	0%	69	42%	-	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_AA_permease
TERT	7015	genome.wustl.edu	37	5	1293684	1293684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198253.2	-1	reviewed	p.E439D	0.000	10	0%	23	34.8%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
TERT	7015	genome.wustl.edu	37	5	1294068	1294068	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198253.2	-1	reviewed	p.S311	0.001	17	0%	52	26.9%	-	-	-	-	-	NULL
CLPTM1L	81037	genome.wustl.edu	37	5	1339098	1339098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030782.3	-1	provisional	p.P159L	0.201	14	0%	28	39.3%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_CLPTM1
CLPTM1L	81037	genome.wustl.edu	37	5	1344508	1344508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030782.3	-1	provisional	p.V74A	1.000	75	0%	146	32.9%	-	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_CLPTM1
SLC6A3	6531	genome.wustl.edu	37	5	1403126	1403126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001044.4	-1	reviewed	p.L560M	0.998	29	0%	82	34.1%	-	-	benign(0.022)	tolerated(0.05)	neutral(0.346)	HMMPfam_SNF
IRX4	50805	genome.wustl.edu	37	5	1879764	1879764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016358.2	-1	validated	p.R197H	1.000	101	0%	214	24.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
IRX1	79192	genome.wustl.edu	37	5	3599609	3599609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024337.3	+1	validated	p.R183W	1.000	98	0%	209	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
ADAMTS16	170690	genome.wustl.edu	37	5	5146471	5146471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139056.2	+1	reviewed	p.S135F	0.001	42	0%	46	26.1%	-	-	possibly_damaging(0.78)	tolerated(0.17)	neutral(0.350)	HMMPfam_Pep_M12B_propep
ADAMTS16	170690	genome.wustl.edu	37	5	5191797	5191797	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139056.2	+1	reviewed	e8-1	1.000	110	0%	47	14.9%	-	-	-	-	-	-
ADAMTS16	170690	genome.wustl.edu	37	5	5242170	5242170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139056.2	+1	reviewed	p.L843P	1.000	87	0%	56	33.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADAM_spacer1
ADAMTS16	170690	genome.wustl.edu	37	5	5303416	5303416	+	Missense_Mutation	SNP	C	C	T	rs77172736	byCluster;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139056.2	+1	reviewed	p.T942M	0.040	17	0%	27	40.7%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KIAA0947	23379	genome.wustl.edu	37	5	5457671	5457671	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015325.1	+1	validated	p.V306	0.000	124	0%	83	38.6%	-	-	-	-	-	NULL
NSUN2	54888	genome.wustl.edu	37	5	6607020	6607020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017755.4	-1	validated	p.P505L	1.000	103	0%	93	11.8%	-	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
PAPD7	11044	genome.wustl.edu	37	5	6753123	6753123	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006999.4	+1	reviewed	p.P469	0.948	128	0%	170	41.2%	-	-	-	-	-	NULL
LOC442132	442132	genome.wustl.edu	37	5	7300725	7300725	+	RNA	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040018.2	-1	model	NULL	0.002	7	0.000	9	0.556	-	-	-	-	-	-
FASTKD3	79072	genome.wustl.edu	37	5	7867115	7867115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024091.2	-1	validated	p.A361V	0.000	58	0%	117	34.2%	-	-	possibly_damaging(0.532)	tolerated(0.16)	neutral(0.239)	NULL
MTRR	4552	genome.wustl.edu	37	5	7897235	7897235	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024010.2	+1	reviewed	p.F636	1.000	65	0%	31	38.7%	-	-	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SEMA5A	9037	genome.wustl.edu	37	5	9044582	9044582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003966.2	-1	reviewed	p.A1003V	0.999	240	0%	77	29.9%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9052063	9052063	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003966.2	-1	reviewed	p.L923	0.559	43	0%	34	29.4%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9066612	9066612	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003966.2	-1	reviewed	p.P740	0.001	91	1.1%	46	30.4%	-	-	-	-	-	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9119118	9119118	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003966.2	-1	reviewed	p.R639	0.994	16	0%	30	36.7%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9119137	9119137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003966.2	-1	reviewed	p.V633A	1.000	13	0%	29	17.2%	-	-	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
CTNND2	1501	genome.wustl.edu	37	5	11117603	11117603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001332.2	-1	validated	p.V746M	1.000	116	0%	66	36.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00185,superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11159760	11159760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001332.2	-1	validated	p.S696L	1.000	159	0%	47	38.3%	-	-	benign(0.301)	deleterious(0.03)	neutral(0.458)	HMMSmart_SM00185,superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11384922	11384922	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001332.2	-1	validated	p.S344	0.998	112	0%	211	34.6%	-	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13766133	13766133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001369.2	-1	reviewed	p.Q3351H	1.000	115	0%	49	36.7%	-	-	possibly_damaging(0.492)	tolerated(0.1)	neutral(0.451)	NULL
TRIO	7204	genome.wustl.edu	37	5	14482784	14482784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007118.2	+1	validated	p.R2187C	1.000	101	0%	154	13.6%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FAM105A	54491	genome.wustl.edu	37	5	14608932	14608932	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019018.2	+1	validated	p.L235	0.912	116	0%	114	36.8%	-	-	-	-	-	NULL
FBXL7	23194	genome.wustl.edu	37	5	15937162	15937162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012304.3	+1	reviewed	p.I448T	1.000	30	0%	35	34.3%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00367,superfamily_RNI-like
FAM134B	54463	genome.wustl.edu	37	5	16572129	16572129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001034850.1	-1	reviewed	p.D135N	1.000	131	0%	53	39.6%	-	-	possibly_damaging(0.556)	tolerated(1)	neutral(0.190)	NULL
MYO10	4651	genome.wustl.edu	37	5	16672857	16672857	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012334.2	-1	validated	p.H1750	0.000	158	0%	123	36.6%	-	-	-	-	-	HMMPfam_RA,HMMSmart_B41
PRDM9	56979	genome.wustl.edu	37	5	23522455	23522455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020227.2	+1	provisional	p.R184Q	0.348	196	0%	83	32.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SSXRD
PRDM9	56979	genome.wustl.edu	37	5	23523426	23523426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020227.2	+1	provisional	p.E303D	1.000	289	0%	96	32.3%	-	-	benign(0.119)	tolerated(0.12)	neutral(0.270)	HMMSmart_SET,superfamily_SSF82199
PRDM9	56979	genome.wustl.edu	37	5	23523431	23523431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020227.2	+1	provisional	p.V305E	1.000	278	0%	97	26.8%	-	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	HMMSmart_SET,superfamily_SSF82199
PRDM9	56979	genome.wustl.edu	37	5	23526439	23526439	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020227.2	+1	provisional	p.Q414	0.004	208	0%	85	32.9%	-	-	-	-	-	NULL
CDH10	1008	genome.wustl.edu	37	5	24493004	24493004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006727.2	-1	reviewed	p.D516Y	1.000	158	0%	27	14.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24509721	24509721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006727.2	-1	reviewed	p.G404S	1.000	195	0%	102	30.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin
DROSHA	29102	genome.wustl.edu	37	5	31431766	31431766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013235.4	-1	validated	p.F1021C	1.000	157	0%	38	44.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ribonuclease_3,HMMSmart_SM00535,superfamily_RNase III catalytic domain-like (Pfam 00636)
C5orf22	55322	genome.wustl.edu	37	5	31541416	31541416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018356.2	+1	validated	p.R300Q	1.000	222	0%	144	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32088705	32088705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178140.2	+1	reviewed	p.H1717Q	0.000	79	1.3%	118	30.5%	-	-	benign(0.031)	tolerated(0.15)	neutral(0.242)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32090978	32090978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178140.2	+1	reviewed	p.S2475L	0.459	39	0%	41	36.6%	-	-	benign(0.195)	deleterious(0.03)	neutral(0.383)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32101301	32101301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178140.2	+1	reviewed	p.S2770L	0.496	226	0%	207	34.8%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ADAMTS12	81792	genome.wustl.edu	37	5	33577169	33577169	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030955.2	-1	reviewed	p.R988*	0.996	81	0%	26	30.8%	-	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS12	81792	genome.wustl.edu	37	5	33624384	33624384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030955.2	-1	reviewed	p.S699A	1.000	65	0%	34	41.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC45A2	51151	genome.wustl.edu	37	5	33982504	33982504	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016180.3	-1	reviewed	p.N133	0.610	98	0%	74	32.4%	-	-	-	-	-	superfamily_MFS general substrate transporter
RAI14	26064	genome.wustl.edu	37	5	34823215	34823215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145525.1	+1	validated	p.S426F	0.012	91	0%	78	47.4%	-	-	possibly_damaging(0.716)	tolerated(0.05)	deleterious(0.605)	NULL
RAI14	26064	genome.wustl.edu	37	5	34823799	34823799	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145525.1	+1	validated	p.Q621*	1.000	82	0%	84	35.7%	-	-	-	-	-	NULL
RAI14	26064	genome.wustl.edu	37	5	34824006	34824006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145525.1	+1	validated	p.L690V	0.215	94	0%	91	40.7%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
TTC23L	153657	genome.wustl.edu	37	5	34850289	34850289	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144725.3	+1	validated	e3-1	0.995	133	0%	41	34.1%	-	-	-	-	-	-
DNAJC21	134218	genome.wustl.edu	37	5	34937551	34937551	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194283.3	+1	validated	p.E187*	1.000	128	0%	116	39.7%	-	-	-	-	-	NULL
DNAJC21	134218	genome.wustl.edu	37	5	34945834	34945834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000303525	+1	known	p.Y384H	0.000	104	0%	78	41%	-	-	benign(0.049)	tolerated(0.16)	neutral(0.062)	NULL
AGXT2	64902	genome.wustl.edu	37	5	34998865	34998865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031900.3	-1	reviewed	p.R502C	0.953	493	0%	194	32%	-	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	superfamily_PyrdxlP-dep_Trfase_major
IL7R	3575	genome.wustl.edu	37	5	35867477	35867477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002185.2	+1	reviewed	p.K97N	0.003	150	0%	28	21.4%	-	-	probably_damaging(0.954)	tolerated(0.15)	deleterious(0.639)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35991194	35991194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000515801	-1	known	p.A50D	0.001	60	0%	48	25%	-	-	unknown(0)	-	-	NULL
UGT3A2	167127	genome.wustl.edu	37	5	36049228	36049228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174914.3	-1	validated	p.K202N	0.993	139	0%	45	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_UDPGT,superfamily_SSF53756
UGT3A2	167127	genome.wustl.edu	37	5	36051998	36051998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174914.3	-1	validated	p.F95L	0.000	94	1.1%	21	38.1%	-	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_UDPGT,superfamily_SSF53756
LMBRD2	92255	genome.wustl.edu	37	5	36111299	36111299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007527.1	-1	validated	p.T568A	1.000	112	0%	25	20%	-	-	possibly_damaging(0.817)	tolerated(0.39)	neutral(0.325)	NULL
NIPBL	25836	genome.wustl.edu	37	5	36984828	36984828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133433.3	+1	reviewed	p.G516C	1.000	55	0%	10	40%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37059084	37059084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133433.3	+1	reviewed	p.R2501Q	1.000	147	0.7%	68	35.3%	-	-	possibly_damaging(0.582)	tolerated(0.25)	neutral(0.237)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37184918	37184918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023073.3	-1	predicted	p.E366*	0.933	130	0%	94	37.2%	-	-	-	-	-	NULL
C5orf42	65250	genome.wustl.edu	37	5	37227142	37227144	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000508244	-1	known	p.RH518in_frame_delN	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38425121	38425121	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152403.2	+1	validated	p.T579	1.000	104	0%	38	39.5%	-	-	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl
LIFR	3977	genome.wustl.edu	37	5	38482082	38482082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127671.1	-1	reviewed	p.A970V	0.120	89	0%	64	37.5%	-	-	benign(0.086)	deleterious(0.02)	neutral(0.390)	NULL
LIFR	3977	genome.wustl.edu	37	5	38490298	38490298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127671.1	-1	reviewed	p.E721*	1.000	153	0%	85	40%	-	-	-	-	-	superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38493843	38493843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127671.1	-1	reviewed	p.L644I	0.022	121	0%	40	35%	-	-	benign(0.086)	tolerated(0.48)	neutral(0.017)	PatternScan_HEMATOPO_REC_L_F2,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38502883	38502883	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127671.1	-1	reviewed	p.G486*	1.000	106	0%	34	20.6%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38506623	38506623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127671.1	-1	reviewed	p.S368N	0.451	88	0%	32	21.9%	-	-	benign(0.003)	tolerated(0.79)	neutral(0.001)	HMMSmart_SM00060,superfamily_Fibronectin type III
OSMR	9180	genome.wustl.edu	37	5	38933241	38933241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003999.2	+1	reviewed	p.K879E	0.000	69	0%	40	35%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
RICTOR	253260	genome.wustl.edu	37	5	38958874	38958874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152756.3	-1	validated	p.F746L	1.000	162	0%	36	36.1%	-	-	probably_damaging(0.972)	tolerated(0.67)	neutral(0.416)	superfamily_ARM repeat
FYB	2533	genome.wustl.edu	37	5	39202842	39202842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001465.3	-1	validated	p.P74L	0.175	129	0%	48	14.6%	-	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
LOC100127944	100127944	genome.wustl.edu	37	5	40680446	40680446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001717341.2	-1	model	p.G421S	0.000	5	0.000	24	0.333	-	-	-	-	-	NULL
PTGER4	5734	genome.wustl.edu	37	5	40681826	40681826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000958.2	+1	reviewed	p.A244V	0.339	6	0.000	6	0.667	-	-	probably_damaging(0.955)	tolerated(0.05)	deleterious(0.744)	HMMPfam_7tm_1,superfamily_SSF81321
TTC33	23548	genome.wustl.edu	37	5	40730378	40730378	+	Missense_Mutation	SNP	C	C	T	rs144481517	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012382.2	-1	validated	p.E97K	1.000	186	0%	89	37.1%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_TPR-like
C7	730	genome.wustl.edu	37	5	40972687	40972687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000587.2	+1	reviewed	p.V689I	0.820	127	0%	31	32.3%	-	-	benign(0.271)	tolerated(0.19)	neutral(0.079)	superfamily_Complement_control_module
C7	730	genome.wustl.edu	37	5	40979868	40979868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000587.2	+1	reviewed	p.R736M	0.245	105	0%	26	38.5%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMSmart_FIMAC
HEATR7B2	133558	genome.wustl.edu	37	5	41000334	41000334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173489.4	-1	validated	p.F1490L	1.000	52	0%	25	32%	-	-	benign(0.001)	tolerated(1)	-	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41012727	41012727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173489.4	-1	validated	p.M1031I	0.926	101	0%	25	24%	-	-	benign(0.431)	tolerated(0.79)	neutral(0.142)	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41149444	41149444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000065.2	-1	reviewed	p.R841H	0.177	131	0%	36	47.2%	-	-	possibly_damaging(0.768)	tolerated(0.26)	neutral(0.319)	NULL
C6	729	genome.wustl.edu	37	5	41181609	41181609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000065.2	-1	reviewed	p.S260Y	0.000	207	0%	43	30.2%	-	-	benign(0.186)	deleterious(0.04)	neutral(0.366)	NULL
OXCT1	5019	genome.wustl.edu	37	5	41862818	41862818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000436.3	-1	reviewed	p.R38H	0.006	121	0%	67	40.3%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
FBXO4	26272	genome.wustl.edu	37	5	41929921	41929921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012176.2	+1	reviewed	p.G183E	1.000	388	0%	385	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GHR	2690	genome.wustl.edu	37	5	42695029	42695029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000163.2	+1	reviewed	p.E93*	0.373	234	0.9%	54	38.9%	-	-	-	-	-	superfamily_Fibronectin type III
CCDC152	100129792	genome.wustl.edu	37	5	42769761	42769761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134848.1	+1	validated	p.L86V	1.000	63	0%	22	36.4%	-	-	benign(0.39)	deleterious(0)	deleterious(0.570)	NULL
CCDC152	100129792	genome.wustl.edu	37	5	42799836	42799836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134848.1	+1	validated	p.R240C	0.990	76	0%	29	44.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CCL28	56477	genome.wustl.edu	37	5	43388573	43388573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148672.2	-1	reviewed	p.L24F	1.000	68	0%	57	19.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Interleukin 8-like chemokines
NNT	23530	genome.wustl.edu	37	5	43609384	43609384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012343.3	+1	reviewed	p.K29N	0.970	238	0%	247	34.4%	-	-	possibly_damaging(0.615)	deleterious(0.01)	deleterious(0.619)	NULL
NNT	23530	genome.wustl.edu	37	5	43700237	43700237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012343.3	+1	reviewed	p.V965I	1.000	207	0%	85	21.2%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_PNTB,superfamily_SSF52467
MRPS30	10884	genome.wustl.edu	37	5	44811229	44811229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016640.3	+1	reviewed	p.Q240H	1.000	142	0%	143	37.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDCD9
HCN1	348980	genome.wustl.edu	37	5	45262330	45262330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021072.2	-1	validated	p.S789L	1.000	110	0%	114	31.6%	-	-	possibly_damaging(0.837)	tolerated(0.13)	deleterious(0.572)	NULL
HCN1	348980	genome.wustl.edu	37	5	45262542	45262542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021072.2	-1	validated	p.H718Q	1.000	154	0%	181	30.4%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
ISL1	3670	genome.wustl.edu	37	5	50683457	50683457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002202.2	+1	reviewed	p.D118N	1.000	28	0%	67	28.4%	-	-	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PELO	53918	genome.wustl.edu	37	5	52096874	52096874	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015946.4	+1	reviewed	p.Q216*	1.000	34	0%	70	32.9%	-	-	-	-	-	HMMPfam_eRF1_2
ITGA1	3672	genome.wustl.edu	37	5	52227927	52227927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181501.1	+1	reviewed	p.S941Y	1.000	218	0%	60	33.3%	-	-	possibly_damaging(0.922)	tolerated(0.11)	deleterious(0.643)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ARL15	54622	genome.wustl.edu	37	5	53467635	53467635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019087.2	-1	validated	p.D58N	0.998	81	0%	32	43.8%	-	-	possibly_damaging(0.879)	tolerated(0.12)	deleterious(0.603)	HMMPfam_Arf,superfamily_SSF52540
DHX29	54505	genome.wustl.edu	37	5	54581589	54581589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019030.2	-1	validated	p.K389N	1.000	135	0%	59	40.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SKIV2L2	23517	genome.wustl.edu	37	5	54662635	54662635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015360.4	+1	validated	p.P581H	1.000	112	0%	26	38.5%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54701358	54701358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015360.4	+1	validated	p.F863V	0.999	182	0%	77	36.4%	-	-	possibly_damaging(0.568)	deleterious(0.01)	deleterious(0.600)	HMMPfam_DSHCT
PPAP2A	8611	genome.wustl.edu	37	5	54763886	54763886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176895.1	-1	reviewed	p.A102V	1.000	138	0%	46	34.8%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_PAP2,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
SLC38A9	153129	genome.wustl.edu	37	5	54929698	54929698	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173514.2	-1	validated	p.T438	1.000	106	0%	53	52.8%	-	-	-	-	-	NULL
IL31RA	133396	genome.wustl.edu	37	5	55204389	55204389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000396836	+1	known	p.A551T	0.000	15	0%	11	36.4%	-	-	unknown(0)	-	-	NULL
IL31RA	133396	genome.wustl.edu	37	5	55210688	55210688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139017.4	+1	validated	p.L584M	0.061	173	0%	84	41.7%	-	-	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56181803	56181803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005921.1	+1	validated	p.E1343*	1.000	117	0%	45	37.8%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PLK2	10769	genome.wustl.edu	37	5	57753977	57753977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006622.2	-1	validated	p.A216V	1.000	107	0%	191	33%	-	-	benign(0.124)	tolerated(0.17)	neutral(0.069)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DEPDC1B	55789	genome.wustl.edu	37	5	59940640	59940640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018369.2	-1	validated	p.S214L	0.990	168	0%	59	30.5%	-	-	benign(0.03)	deleterious(0.05)	neutral(0.347)	NULL
ZSWIM6	57688	genome.wustl.edu	37	5	60821772	60821772	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020928.1	+1	provisional	p.L553	1.000	97	0%	26	15.4%	-	-	-	-	-	NULL
KIF2A	3796	genome.wustl.edu	37	5	61811220	61811220	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000509663	+1	known	p.D24V	0.995	161	0%	223	10.3%	-	-	-	-	-	NULL
IPO11	51194	genome.wustl.edu	37	5	61832566	61832566	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134779.1	+1	validated	p.I749	1.000	134	0%	52	26.9%	-	-	-	-	-	superfamily_ARM repeat
HTR1A	3350	genome.wustl.edu	37	5	63257399	63257399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000524.2	-1	validated	p.A50T	1.000	53	0%	58	39.7%	-	-	possibly_damaging(0.825)	tolerated(1)	neutral(0.312)	superfamily_Family A G protein-coupled receptor-like
SREK1IP1	285672	genome.wustl.edu	37	5	64020274	64020274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173829.3	-1	validated	p.K135N	1.000	40	0%	24	25%	-	-	unknown(0)	tolerated(0.18)	-	NULL
CWC27	10283	genome.wustl.edu	37	5	64077803	64077803	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005869.2	+1	validated	p.G65	0.004	152	0.7%	58	24.1%	-	-	-	-	-	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like
ERBB2IP	55914	genome.wustl.edu	37	5	65350613	65350613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018695.2	+1	reviewed	p.T1156N	1.000	60	0%	42	23.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MAST4	375449	genome.wustl.edu	37	5	66405935	66405935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015183.2	+1	validated	p.R267C	1.000	171	0%	64	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1908
MAST4	375449	genome.wustl.edu	37	5	66429370	66429370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015183.2	+1	validated	p.K519Q	1.000	219	0%	56	26.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAST4	375449	genome.wustl.edu	37	5	66462006	66462006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000443808	+1	known	p.P1390S	0.977	52	0%	91	38.5%	-	-	-	-	-	NULL
CD180	4064	genome.wustl.edu	37	5	66479210	66479210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005582.2	-1	validated	p.T487	0.000	170	0%	83	30.1%	-	-	-	-	-	superfamily_L domain-like
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181523.1	+1	reviewed	p.R348*	1.000	156	0%	104	38.5%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PIK3R1	5295	genome.wustl.edu	37	5	67592161	67592161	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181523.1	+1	reviewed	p.C659*	1.000	132	0%	57	33.3%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
SLC30A5	64924	genome.wustl.edu	37	5	68396695	68396695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022902.2	+1	provisional	p.E49K	1.000	171	0%	151	27.2%	-	-	possibly_damaging(0.918)	deleterious(0.03)	deleterious(0.733)	NULL
MARVELD2	153562	genome.wustl.edu	37	5	68716267	68716267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001038603.2	+1	validated	p.M352T	1.000	102	0%	97	41.2%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_MARVEL
BDP1	55814	genome.wustl.edu	37	5	70786951	70786951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018429.2	+1	reviewed	p.S545P	0.008	167	0%	69	39.1%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
BDP1	55814	genome.wustl.edu	37	5	70808182	70808182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018429.2	+1	reviewed	p.E1392*	0.042	82	0%	38	28.9%	-	-	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70855917	70855917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018429.2	+1	reviewed	p.R2450I	0.000	107	0%	66	30.3%	-	-	possibly_damaging(0.852)	tolerated(0.28)	neutral(0.359)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493725	71493725	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005909.3	+1	validated	p.E1515*	1.000	115	0%	49	28.6%	-	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71494321	71494321	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005909.3	+1	validated	p.Q1713	1.000	98	0%	69	27.5%	-	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495808	71495808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005909.3	+1	validated	p.S2209N	1.000	64	0%	26	46.2%	-	-	unknown(0)	tolerated(0.13)	-	NULL
MRPS27	23107	genome.wustl.edu	37	5	71529972	71529972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015084.2	-1	reviewed	p.S150Y	0.962	91	0%	20	50%	-	-	benign(0)	tolerated(0.95)	-	HMMPfam_MRP-S27
PTCD2	79810	genome.wustl.edu	37	5	71648540	71648540	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024754.3	+1	validated	p.L301I	0.005	172	0%	59	23.7%	-	-	possibly_damaging(0.731)	tolerated(0.17)	neutral(0.326)	NULL
ZNF366	167465	genome.wustl.edu	37	5	71752275	71752275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152625.1	-1	provisional	p.A494T	1.000	185	0%	198	36.9%	-	-	benign(0.027)	tolerated(0.27)	neutral(0.035)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF366	167465	genome.wustl.edu	37	5	71756258	71756258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152625.1	-1	provisional	p.E356K	1.000	63	0%	91	30.8%	-	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BTF3	689	genome.wustl.edu	37	5	72800211	72800211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037637.1	+1	reviewed	p.D186G	1.000	113	0%	131	34.4%	-	-	benign(0.268)	tolerated(0.22)	neutral(0.071)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73136553	73136553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080479.2	+1	reviewed	p.F465L	0.378	123	0%	52	40.4%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
NSA2	10412	genome.wustl.edu	37	5	74069826	74069826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014886.3	+1	provisional	p.V219A	1.000	117	0%	76	35.5%	-	-	possibly_damaging(0.584)	deleterious(0)	deleterious(0.645)	HMMPfam_Ribosomal_S8e
ANKRD31	256006	genome.wustl.edu	37	5	74484359	74484359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000274361	-1	known	p.C508Y	0.021	190	0%	36	33.3%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
POC5	134359	genome.wustl.edu	37	5	74973769	74973769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099271.1	-1	validated	p.P472S	0.935	193	0%	78	34.6%	-	-	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	NULL
SV2C	22987	genome.wustl.edu	37	5	75587674	75587674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014979.1	+1	provisional	p.S444P	1.000	206	0%	63	25.4%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75970449	75970449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006633.2	+1	validated	p.A1148T	1.000	75	0%	30	30%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
IQGAP2	10788	genome.wustl.edu	37	5	75993819	75993819	+	Missense_Mutation	SNP	G	G	A	rs189501812	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006633.2	+1	validated	p.R1405Q	1.000	71	0%	21	76.2%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_RasGAP_C
F2RL1	2150	genome.wustl.edu	37	5	76128515	76128515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005242.4	+1	validated	p.G28V	0.800	76	0%	48	41.7%	-	-	benign(0.18)	tolerated(0.14)	neutral(0.266)	NULL
CRHBP	1393	genome.wustl.edu	37	5	76264594	76264594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001882.3	+1	reviewed	p.V285I	1.000	127	0%	66	34.8%	-	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMPfam_CRF-BP
AGGF1	55109	genome.wustl.edu	37	5	76357626	76357626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018046.3	+1	validated	p.P648L	1.000	306	0%	116	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-patch,HMMSmart_SM00443
OTP	23440	genome.wustl.edu	37	5	76932765	76932765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032109.2	-1	reviewed	p.R110C	1.000	32	0%	104	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
AP3B1	8546	genome.wustl.edu	37	5	77477331	77477331	+	Silent	SNP	C	C	T	rs146871001	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003664.3	-1	reviewed	p.A314	1.000	145	0.7%	45	33.3%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP3B1	8546	genome.wustl.edu	37	5	77477472	77477472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003664.3	-1	reviewed	p.E267D	0.725	187	0%	83	32.5%	-	-	benign(0.016)	tolerated(0.35)	neutral(0.021)	HMMPfam_Adaptin_N,superfamily_ARM repeat
ARSB	411	genome.wustl.edu	37	5	78260357	78260357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000046.3	-1	reviewed	p.R191Q	1.000	93	0%	33	45.5%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
BHMT2	23743	genome.wustl.edu	37	5	78375194	78375194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017614.4	+1	reviewed	p.R57C	0.998	89	0%	82	26.8%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
CMYA5	202333	genome.wustl.edu	37	5	79025892	79025892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153610.3	+1	validated	p.S435Y	0.075	75	0%	30	23.3%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79026180	79026180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153610.3	+1	validated	p.I531N	0.972	119	0%	39	35.9%	-	-	possibly_damaging(0.688)	deleterious(0.02)	deleterious(0.629)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79026779	79026779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153610.3	+1	validated	p.I731L	0.001	75	0%	41	22%	-	-	possibly_damaging(0.94)	deleterious(0.01)	deleterious(0.790)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79029763	79029763	+	Silent	SNP	G	G	A	rs151112453	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153610.3	+1	validated	p.S1725	0.006	81	0%	17	35.3%	-	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79032662	79032662	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153610.3	+1	validated	p.E2692*	0.086	82	0%	23	52.2%	-	-	-	-	-	NULL
THBS4	7060	genome.wustl.edu	37	5	79357621	79357621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003248.4	+1	reviewed	p.G364D	1.000	179	0%	187	32.6%	-	-	benign(0.429)	tolerated(0.06)	neutral(0.462)	HMMSmart_EGF_CA
ZFYVE16	9765	genome.wustl.edu	37	5	79768637	79768637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105251.1	+1	validated	p.R1361Q	1.000	146	0%	56	33.9%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80388672	80388672	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006909.1	+1	validated	p.R481	0.977	116	0%	80	38.8%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ACOT12	134526	genome.wustl.edu	37	5	80643707	80643707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130767.2	-1	validated	p.G180D	0.011	88	0%	38	36.8%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
ATG10	83734	genome.wustl.edu	37	5	81474364	81474364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001131028.1	+1	validated	p.K137N	0.081	196	0%	42	31%	-	-	possibly_damaging(0.736)	tolerated(0.36)	neutral(0.289)	HMMPfam_Autophagy_act_C
ATP6AP1L	92270	genome.wustl.edu	37	5	81608619	81608619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017971.1	+1	provisional	p.S107	0.940	125	0%	86	33.7%	-	-	-	-	-	HMMPfam_ATP-synt_S1
XRCC4	7518	genome.wustl.edu	37	5	82649020	82649020	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022406.2	+1	reviewed	p.L324	0.976	115	0%	21	42.9%	-	-	-	-	-	HMMPfam_XRCC4
VCAN	1462	genome.wustl.edu	37	5	82817236	82817236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004385.4	+1	reviewed	p.W1037C	0.003	40	0%	25	28%	-	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
VCAN	1462	genome.wustl.edu	37	5	82817638	82817638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004385.4	+1	reviewed	p.E1171D	0.014	94	0%	25	44%	-	-	possibly_damaging(0.589)	tolerated(0.05)	deleterious(0.548)	NULL
VCAN	1462	genome.wustl.edu	37	5	82837831	82837831	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004385.4	+1	reviewed	p.T3003	0.000	77	0%	18	38.9%	-	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82843820	82843820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004385.4	+1	reviewed	p.R3137H	1.000	287	0%	76	10.5%	-	-	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
VCAN	1462	genome.wustl.edu	37	5	82876228	82876228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004385.4	+1	reviewed	p.R3389Q	1.000	166	0%	43	39.5%	-	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
RASA1	5921	genome.wustl.edu	37	5	86679578	86679578	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002890.1	+1	reviewed	p.R913	1.000	166	0%	33	33.3%	-	-	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CCNH	902	genome.wustl.edu	37	5	86690887	86690887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001239.2	-1	reviewed	p.V303I	0.999	275	0%	96	27.1%	-	-	benign(0.006)	tolerated(0.35)	neutral(0.021)	NULL
MEF2C	4208	genome.wustl.edu	37	5	88100596	88100596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002397.3	-1	validated	p.F26C	1.000	176	0%	58	44.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRF-TF,HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like
GPR98	84059	genome.wustl.edu	37	5	89949605	89949605	+	Missense_Mutation	SNP	C	C	A	rs41305898	byCluster;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032119.3	+1	reviewed	p.S1405Y	1.000	201	0%	69	33.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Concanavalin A-like lectins/glucanases
GPR98	84059	genome.wustl.edu	37	5	90072290	90072290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032119.3	+1	reviewed	p.R4142W	0.052	201	0%	41	29.3%	-	-	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
POU5F2	134187	genome.wustl.edu	37	5	93076844	93076844	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153216.1	-1	provisional	p.Y142	1.000	137	0%	188	46.3%	-	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,superfamily_Lambda_like_DNA
KIAA0825	285600	genome.wustl.edu	37	5	93727362	93727362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145678.1	-1	validated	p.E1112K	1.000	270	0%	68	33.8%	-	-	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93752802	93752802	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000312498	-1	known	p.V541	0.000	28	0%	16	37.5%	-	-	-	-	-	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93812911	93812911	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145678.1	-1	validated	e5-1	1.000	220	0%	128	45.3%	-	-	-	-	-	-
LOC100131573	100131573	genome.wustl.edu	37	5	93929200	93929200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001716404.1	+1	model	p.Y260C	0.374	73	0%	18	27.8%	-	-	-	-	-	NULL
MCTP1	79772	genome.wustl.edu	37	5	94204080	94204080	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024717.4	-1	validated	p.C798	1.000	86	0%	13	30.8%	-	-	-	-	-	NULL
TTC37	9652	genome.wustl.edu	37	5	94826722	94826722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014639.2	-1	provisional	p.A1274V	1.000	86	0%	60	41.7%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_Prenyl_trans
RHOBTB3	22836	genome.wustl.edu	37	5	95103798	95103798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014899.3	+1	validated	p.W404R	1.000	155	0%	82	37.8%	-	-	benign(0.186)	tolerated(0.14)	neutral(0.267)	superfamily_BTB/POZ_fold
ELL2	22936	genome.wustl.edu	37	5	95226865	95226865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012081.5	-1	validated	p.R568I	1.000	251	0%	134	14.9%	-	-	unknown(0)	tolerated(0.09)	-	HMMPfam_Occludin_ELL
PCSK1	5122	genome.wustl.edu	37	5	95730722	95730722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000439.4	-1	reviewed	p.R577K	1.000	160	0%	77	32.5%	-	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_P_proprotein,superfamily_Gal_bind_like
CAST	831	genome.wustl.edu	37	5	96073629	96073629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001750.5	+1	reviewed	p.T259M	0.045	149	0%	61	44.3%	-	-	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	HMMPfam_Calpain_inhib
ERAP2	64167	genome.wustl.edu	37	5	96232435	96232435	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130140.1	+1	validated	e8-1	1.000	65	0%	24	33.3%	-	-	-	-	-	-
LNPEP	4012	genome.wustl.edu	37	5	96362355	96362355	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005575.2	+1	reviewed	p.R920*	1.000	123	0%	35	22.9%	-	-	-	-	-	NULL
RIOK2	55781	genome.wustl.edu	37	5	96503156	96503156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000508447	-1	known	p.S471L	0.000	63	0%	19	42.1%	-	-	unknown(0)	-	-	NULL
RIOK2	55781	genome.wustl.edu	37	5	96513496	96513496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018343.2	-1	validated	p.L88F	1.000	124	0%	38	44.7%	-	-	possibly_damaging(0.854)	tolerated(0.14)	deleterious(0.579)	HMMPfam_Rio2_N,superfamily_SSF46785
RGMB	285704	genome.wustl.edu	37	5	98128924	98128924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012761.2	+1	validated	p.V302M	0.968	53	0%	54	29.6%	-	-	possibly_damaging(0.86)	tolerated(0.1)	deleterious(0.619)	HMMPfam_RGM_C
CHD1	1105	genome.wustl.edu	37	5	98209302	98209302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001270.2	-1	reviewed	p.R1189Q	1.000	241	0.4%	88	28.4%	-	-	benign(0.137)	tolerated(0.18)	neutral(0.068)	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109117124	109117124	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002372.2	+1	reviewed	p.F468V	1.000	132	0%	31	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
MAN2A1	4124	genome.wustl.edu	37	5	109181640	109181640	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002372.2	+1	reviewed	p.I925	1.000	226	0%	62	33.9%	-	-	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
CAMK4	814	genome.wustl.edu	37	5	110818512	110818512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001744.3	+1	reviewed	p.K286N	1.000	106	0%	34	32.4%	-	-	possibly_damaging(0.461)	tolerated(0.27)	neutral(0.184)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NREP	9315	genome.wustl.edu	37	5	111312431	111312431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142475.1	-1	validated	p.K2N	0.692	211	0%	112	38.4%	-	-	benign(0.348)	-	-	NULL
APC	324	genome.wustl.edu	37	5	112175867	112175867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000038.4	+1	reviewed	p.P1526S	1.000	92	0%	59	44.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APC	324	genome.wustl.edu	37	5	112177203	112177203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000038.4	+1	reviewed	p.S1971Y	1.000	119	0%	64	26.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_APC_crr
APC	324	genome.wustl.edu	37	5	112178120	112178120	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000038.4	+1	reviewed	p.S2277A	0.835	74	0%	32	40.6%	-	-	benign(0)	tolerated(1)	-	HMMPfam_APC_basic
APC	324	genome.wustl.edu	37	5	112179396	112179396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000038.4	+1	reviewed	p.A2702V	1.000	65	0%	27	51.9%	-	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_EB1_binding
ZRSR1	7310	genome.wustl.edu	37	5	112228483	112228483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000391338	+1	known	p.R383W	0.001	71	0%	71	39.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
REEP5	7905	genome.wustl.edu	37	5	112256893	112256893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005669.4	-1	validated	p.N60S	1.000	130	0%	188	35.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TB2_DP1_HVA22
MCC	4163	genome.wustl.edu	37	5	112403792	112403792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085377.1	-1	reviewed	p.V672M	0.990	29	0%	37	43.2%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
TSSK1B	83942	genome.wustl.edu	37	5	112769636	112769636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032028.3	-1	validated	p.E301K	0.590	52	0%	98	39.8%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	superfamily_Protein kinase-like (PK-like)
TSSK1B	83942	genome.wustl.edu	37	5	112769983	112769983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032028.3	-1	validated	p.E185G	0.998	62	0%	63	30.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YTHDC2	64848	genome.wustl.edu	37	5	112889297	112889297	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022828.3	+1	validated	p.L626	1.000	201	0%	72	34.7%	-	-	-	-	-	superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112896882	112896882	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022828.3	+1	validated	p.Q774	1.000	127	0%	60	28.3%	-	-	-	-	-	superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112901656	112901656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022828.3	+1	validated	p.A928T	1.000	127	0%	45	40%	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113698484	113698484	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021614.2	+1	reviewed	p.C4	1.000	10	0%	26	42.3%	-	-	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114469702	114469702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018700.3	-1	reviewed	p.W463*	1.000	187	0%	118	33.9%	-	-	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
TRIM36	55521	genome.wustl.edu	37	5	114499229	114499229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018700.3	-1	reviewed	p.R95Q	1.000	151	1.3%	140	39.3%	-	-	benign(0.217)	tolerated(0.09)	neutral(0.318)	HMMSmart_SM00184,superfamily_RING/U-box
PGGT1B	5229	genome.wustl.edu	37	5	114552662	114552662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005023.3	-1	validated	p.K284N	0.999	113	0%	15	33.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
AQPEP	206338	genome.wustl.edu	37	5	115335507	115335507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173800.4	+1	validated	p.H475Y	0.650	95	0%	52	36.5%	-	-	probably_damaging(0.963)	deleterious(0.04)	deleterious(0.754)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
SEMA6A	57556	genome.wustl.edu	37	5	115783475	115783475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020796.3	-1	validated	p.D643N	1.000	30	0%	31	35.5%	-	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115813831	115813831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020796.3	-1	validated	p.E483K	1.000	102	0%	59	27.1%	-	-	possibly_damaging(0.752)	tolerated(0.08)	deleterious(0.576)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
DMXL1	1657	genome.wustl.edu	37	5	118465068	118465068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005509.4	+1	validated	p.S422F	0.995	69	0%	27	29.6%	-	-	possibly_damaging(0.776)	deleterious(0.05)	deleterious(0.635)	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118532133	118532133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005509.4	+1	validated	p.A2509T	1.000	311	0%	96	27.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118582692	118582692	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005509.4	+1	validated	p.I2954	0.899	247	0%	72	25%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HSD17B4	3295	genome.wustl.edu	37	5	118860924	118860924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000414.2	+1	reviewed	p.R506H	1.000	139	0%	73	30.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MaoC_dehydratas,superfamily_SSF54637
PRR16	51334	genome.wustl.edu	37	5	120021795	120021795	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016644.1	+1	provisional	p.P79	0.082	140	0%	46	10.9%	-	-	-	-	-	NULL
SNX24	28966	genome.wustl.edu	37	5	122335640	122335640	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014035.2	+1	validated	p.L95	1.000	194	0%	131	33.6%	-	-	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CEP120	153241	genome.wustl.edu	37	5	122720781	122720781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153223.3	-1	reviewed	p.D543Y	1.000	152	0%	33	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ZNF608	57507	genome.wustl.edu	37	5	123980344	123980344	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020747.2	-1	validated	p.S1239*	1.000	73	0%	56	37.5%	-	-	-	-	-	NULL
MEGF10	84466	genome.wustl.edu	37	5	126791225	126791225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032446.2	+1	validated	p.S1053L	1.000	92	0%	23	26.1%	-	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
FBN2	2201	genome.wustl.edu	37	5	127615948	127615948	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001999.3	-1	reviewed	p.I2358	1.000	192	0%	41	14.6%	-	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SLC27A6	28965	genome.wustl.edu	37	5	128301957	128301957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017372.1	+1	reviewed	p.R43W	0.000	160	0.6%	201	39.3%	-	-	benign(0.018)	deleterious(0)	neutral(0.445)	NULL
SLC27A6	28965	genome.wustl.edu	37	5	128351708	128351708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017372.1	+1	reviewed	p.S367N	1.000	254	0%	93	43%	-	-	benign(0)	tolerated(1)	-	HMMPfam_AMP-binding,superfamily_SSF56801
ISOC1	51015	genome.wustl.edu	37	5	128440731	128440731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016048.2	+1	validated	p.K131R	1.000	418	0%	168	32.1%	-	-	benign(0.06)	tolerated(0.29)	neutral(0.033)	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase
ADAMTS19	171019	genome.wustl.edu	37	5	129015502	129015502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133638.3	+1	reviewed	p.I845T	1.000	78	0%	48	16.7%	-	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_ADAM_spacer1
RAPGEF6	51735	genome.wustl.edu	37	5	130766823	130766823	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016340.5	-1	validated	p.D1398	1.000	232	0%	131	13%	-	-	-	-	-	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130797438	130797438	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016340.5	-1	validated	p.R942*	1.000	122	0%	34	20.6%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
FNIP1	96459	genome.wustl.edu	37	5	130982817	130982817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000513722	-1	known	p.C923*	1.000	281	0%	98	34.7%	-	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131039757	131039757	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133372.2	-1	validated	e10+1	1.000	53	0%	11	45.5%	-	-	-	-	-	-
P4HA2	8974	genome.wustl.edu	37	5	131539836	131539836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142599.1	-1	reviewed	p.A364T	1.000	197	0%	148	25.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00702
P4HA2	8974	genome.wustl.edu	37	5	131552935	131552935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142599.1	-1	reviewed	p.D96Y	1.000	72	0%	68	30.9%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_P4Ha_N
SLC22A4	6583	genome.wustl.edu	37	5	131630410	131630410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003059.2	+1	reviewed	p.F34S	1.000	42	0%	71	39.4%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_MFS_gen_substrate_transporter
RAD50	10111	genome.wustl.edu	37	5	131953833	131953833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005732.3	+1	reviewed	p.K1079T	0.995	124	0%	45	24.4%	-	-	benign(0.054)	tolerated(0.12)	neutral(0.264)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHROOM1	134549	genome.wustl.edu	37	5	132159744	132159744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133456.2	-1	validated	p.W537R	0.935	101	0%	234	33.8%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SHROOM1	134549	genome.wustl.edu	37	5	132161190	132161190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133456.2	-1	validated	p.A215T	0.001	4	0.000	22	0.318	-	-	benign(0.03)	tolerated(0.92)	neutral(0.002)	HMMPfam_ASD1
FSTL4	23105	genome.wustl.edu	37	5	132556621	132556621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000360575	-1	known	p.A75V	0.000	44	0%	44	18.2%	-	-	-	-	-	NULL
PHF15	23338	genome.wustl.edu	37	5	133873711	133873711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015288.4	+1	provisional	p.S31A	1.000	52	0%	69	36.2%	-	-	benign(0.277)	tolerated(0.07)	neutral(0.349)	NULL
SEC24A	10802	genome.wustl.edu	37	5	134029591	134029591	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021982.1	+1	validated	p.R652*	1.000	65	0%	55	10.9%	-	-	-	-	-	HMMPfam_Sec23_trunk,superfamily_vWA-like
DDX46	9879	genome.wustl.edu	37	5	134130547	134130547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014829.2	+1	reviewed	p.R545H	1.000	218	0%	125	36%	-	-	benign(0.22)	tolerated(0.07)	neutral(0.341)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
DDX46	9879	genome.wustl.edu	37	5	134130627	134130627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014829.2	+1	reviewed	p.R572C	1.000	195	0%	131	31.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_DEXDc,superfamily_SSF52540
TRPC7	57113	genome.wustl.edu	37	5	135651366	135651366	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000503275	-1	known	p.C294R	0.999	133	0%	63	14.3%	-	-	-	-	-	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137235288	137235288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014386.2	+1	validated	p.T203N	0.988	160	0%	89	33.7%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_PKD_channel
KDM3B	51780	genome.wustl.edu	37	5	137726898	137726898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016604.3	+1	validated	p.F526C	1.000	185	0%	119	28.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HSPA9	3313	genome.wustl.edu	37	5	137909756	137909756	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004134.6	-1	reviewed	e2+1	1.000	86	0%	94	33%	-	-	-	-	-	-
CTNNA1	1495	genome.wustl.edu	37	5	138145755	138145755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001903.2	+1	validated	p.E110D	1.000	152	0%	185	43.2%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA1	1495	genome.wustl.edu	37	5	138240084	138240084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001903.2	+1	validated	p.K448T	1.000	182	0%	119	16.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SLC23A1	9963	genome.wustl.edu	37	5	138716259	138716259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152685.3	-1	reviewed	p.R154W	0.017	113	0%	167	38.3%	-	-	possibly_damaging(0.637)	deleterious(0.01)	deleterious(0.629)	HMMPfam_Xan_ur_permease
PSD2	84249	genome.wustl.edu	37	5	139193892	139193892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032289.2	+1	provisional	p.R320H	1.000	12	0%	25	20%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
PSD2	84249	genome.wustl.edu	37	5	139216555	139216555	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032289.2	+1	provisional	p.R521	1.000	65	0%	59	33.9%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLC4A9	83697	genome.wustl.edu	37	5	139750748	139750748	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031467.2	+1	validated	p.Q832	1.000	179	0.6%	158	43%	-	-	-	-	-	HMMPfam_HCO3_cotransp
CD14	929	genome.wustl.edu	37	5	140011531	140011531	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000591.3	-1	reviewed	p.S346	0.001	29	0%	30	26.7%	-	-	-	-	-	NULL
CD14	929	genome.wustl.edu	37	5	140011992	140011992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000591.3	-1	reviewed	p.F193V	0.389	25	0%	39	30.8%	-	-	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	superfamily_SSF52047
DND1	373863	genome.wustl.edu	37	5	140051267	140051267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194249.1	-1	provisional	p.R225C	0.920	34	0%	61	45.9%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
ZMAT2	153527	genome.wustl.edu	37	5	140085314	140085314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144723.1	+1	provisional	p.G191	1.000	380	0%	217	32.3%	-	-	-	-	-	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140167951	140167951	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018900.2	+1	reviewed	p.A692	0.006	30	0%	78	28.2%	-	-	-	-	-	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140175815	140175815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018905.2	+1	reviewed	p.E422D	0.000	51	0%	90	33.3%	-	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187880	140187880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018907.2	+1	reviewed	p.A370T	0.882	60	0%	122	41%	-	-	benign(0.043)	deleterious(0.03)	neutral(0.367)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140189117	140189117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018907.2	+1	reviewed	p.R782I	0.019	100	0%	200	24%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
PCDHA6	56142	genome.wustl.edu	37	5	140209042	140209042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018909.2	+1	reviewed	p.A456T	0.033	45	0%	102	36.3%	-	-	benign(0.006)	tolerated(0.45)	neutral(0.012)	superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140214382	140214382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018910.2	+1	reviewed	p.R138S	0.000	124	0%	246	28.5%	-	-	benign(0.07)	tolerated(0.4)	neutral(0.021)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215216	140215216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018910.2	+1	reviewed	p.E416D	0.798	70	0%	137	33.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140228983	140228983	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031857.1	+1	reviewed	p.A301	0.001	136	0%	248	18.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140255773	140255773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018903.2	+1	reviewed	p.G239V	0.009	102	0%	218	41.3%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263349	140263349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018904.2	+1	reviewed	p.V499G	0.091	28	0%	70	12.9%	-	-	possibly_damaging(0.874)	tolerated(0.12)	deleterious(0.600)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263461	140263461	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018904.2	+1	reviewed	p.S536	1.000	34	0%	74	28.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB5	26167	genome.wustl.edu	37	5	140516849	140516849	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015669.2	+1	reviewed	p.P611	0.966	21	0%	38	34.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140563214	140563214	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020957.1	+1	reviewed	p.S360	0.081	89	0%	154	31.8%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140572643	140572643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018930.3	+1	reviewed	p.S173I	0.011	98	0%	163	42.3%	-	-	benign(0.262)	deleterious(0)	deleterious(0.472)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140572810	140572810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018930.3	+1	reviewed	p.R229C	0.000	75	0%	147	38.1%	-	-	possibly_damaging(0.924)	tolerated(0.13)	deleterious(0.625)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626776	140626776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018935.2	+1	reviewed	p.E544K	0.884	46	0%	75	34.7%	-	-	benign(0.262)	tolerated(0.13)	neutral(0.280)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140627173	140627173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018935.2	+1	reviewed	p.A676V	0.001	19	0%	47	51.1%	-	-	benign(0.002)	tolerated(1)	-	NULL
TAF7	6879	genome.wustl.edu	37	5	140699209	140699209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005642.2	-1	reviewed	p.G135R	1.000	139	0%	192	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAFII55_N
TAF7	6879	genome.wustl.edu	37	5	140699481	140699481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005642.2	-1	reviewed	p.T44I	1.000	222	0%	201	32.3%	-	-	possibly_damaging(0.948)	deleterious(0.04)	deleterious(0.740)	HMMPfam_TAFII55_N
PCDHGA1	56114	genome.wustl.edu	37	5	140710550	140710550	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018912.2	+1	reviewed	p.M100K	0.000	68	0%	104	38.5%	-	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA1	56114	genome.wustl.edu	37	5	140712286	140712286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018912.2	+1	reviewed	p.E679K	0.000	73	0%	161	39.8%	-	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
PCDHGA2	56113	genome.wustl.edu	37	5	140718765	140718765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018915.2	+1	reviewed	p.A76V	0.985	55	0%	110	20%	-	-	possibly_damaging(0.803)	tolerated(0.11)	deleterious(0.574)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140719110	140719110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018915.2	+1	reviewed	p.Y191C	0.983	54	0%	98	11.2%	-	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140725274	140725274	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018916.3	+1	reviewed	p.N558	0.000	80	0%	144	34.7%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140725425	140725425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018916.3	+1	reviewed	p.L609I	0.999	31	0%	87	36.8%	-	-	benign(0.364)	tolerated(0.23)	neutral(0.158)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140725700	140725700	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018916.3	+1	reviewed	p.V700	0.815	100	0%	201	31.8%	-	-	-	-	-	NULL
PCDHGB1	56104	genome.wustl.edu	37	5	140730469	140730469	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018922.2	+1	reviewed	p.G214	0.068	39	0%	65	40%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730536	140730536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018922.2	+1	reviewed	p.P237T	1.000	43	0%	101	26.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140739726	140739726	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018923.2	+1	reviewed	p.C8	0.024	114	0%	210	34.8%	-	-	-	-	-	NULL
PCDHGB2	56103	genome.wustl.edu	37	5	140740020	140740020	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018923.2	+1	reviewed	p.F106	0.908	38	0%	84	36.9%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740659	140740659	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018923.2	+1	reviewed	p.I319	0.797	69	0%	124	31.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744848	140744848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018918.2	+1	reviewed	p.M317I	0.969	65	0%	107	34.6%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745353	140745353	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018918.2	+1	reviewed	p.R486*	0.000	100	0%	171	29.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745769	140745769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018918.2	+1	reviewed	p.G624	0.500	32	0%	73	37%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764450	140764450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018920.2	+1	reviewed	p.V662M	0.997	37	0%	90	32.2%	-	-	possibly_damaging(0.611)	deleterious(0.02)	deleterious(0.595)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764510	140764510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018920.2	+1	reviewed	p.D682N	0.000	54	0%	104	36.5%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
PCDHGA7	56108	genome.wustl.edu	37	5	140764865	140764865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018920.2	+1	reviewed	p.C800Y	0.000	86	0%	140	40.7%	-	-	benign(0.001)	tolerated(1)	-	NULL
PCDHGB5	56101	genome.wustl.edu	37	5	140778504	140778504	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018925.2	+1	reviewed	p.D270	0.442	39	0%	71	39.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779434	140779434	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018925.2	+1	reviewed	p.P580	0.768	21	0%	43	41.9%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783551	140783551	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018921.2	+1	reviewed	p.R344	0.028	85	0%	185	35.1%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788353	140788353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018926.2	+1	reviewed	p.S195F	0.040	53	0%	90	40%	-	-	benign(0.119)	deleterious(0)	neutral(0.454)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789335	140789335	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018926.2	+1	reviewed	p.H522	1.000	12	0%	18	33.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140792762	140792762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018913.2	+1	reviewed	p.R7H	0.000	31	0%	91	34.1%	-	-	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
PCDHGA10	56106	genome.wustl.edu	37	5	140792848	140792848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018913.2	+1	reviewed	p.S36T	0.956	45	0%	101	40.6%	-	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140793358	140793358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018913.2	+1	reviewed	p.R206C	1.000	26	0%	35	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140797666	140797666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018927.2	+1	reviewed	p.Q80H	0.999	254	0%	479	37.6%	-	-	benign(0.006)	deleterious(0.05)	neutral(0.345)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140798609	140798609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018927.2	+1	reviewed	p.H395N	0.089	89	0%	138	36.2%	-	-	benign(0.003)	tolerated(0.35)	neutral(0.021)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140811076	140811076	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003735.2	+1	reviewed	p.S250	0.000	23	0%	58	32.8%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140812186	140812186	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003735.2	+1	reviewed	p.G620	0.656	34	0%	74	41.9%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140812421	140812421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003735.2	+1	reviewed	p.A699T	0.000	65	0%	146	36.3%	-	-	benign(0.009)	tolerated(0.42)	neutral(0.015)	NULL
PCDHGC3	5098	genome.wustl.edu	37	5	140857428	140857428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002588.2	+1	reviewed	p.R582Q	1.000	34	0%	41	46.3%	-	-	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140866625	140866625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018928.2	+1	reviewed	p.R629W	0.751	89	0%	119	10.9%	-	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140869858	140869858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018929.2	+1	reviewed	p.L351I	0.003	160	0.6%	258	32.6%	-	-	benign(0.053)	tolerated(1)	neutral(0.004)	superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140951601	140951601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005219.4	-1	reviewed	p.A789T	0.996	166	0%	110	33.6%	-	-	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
ARAP3	64411	genome.wustl.edu	37	5	141044519	141044519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022481.5	-1	reviewed	p.D924Y	1.000	27	0%	46	30.4%	-	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ARAP3	64411	genome.wustl.edu	37	5	141051538	141051538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022481.5	-1	reviewed	p.R532Q	1.000	102	0%	164	40.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP
PCDH12	51294	genome.wustl.edu	37	5	141335709	141335709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016580.2	-1	reviewed	p.L570F	0.648	62	0%	49	36.7%	-	-	probably_damaging(0.996)	tolerated(0.39)	deleterious(0.478)	superfamily_Cadherin
NR3C1	2908	genome.wustl.edu	37	5	142779446	142779446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024094.1	-1	reviewed	p.S320Y	1.000	63	0%	72	36.1%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_GCR
LARS	51520	genome.wustl.edu	37	5	145509649	145509649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020117.9	-1	reviewed	p.V854I	1.000	109	0%	27	40.7%	-	-	benign(0.016)	tolerated(0.62)	neutral(0.005)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
LARS	51520	genome.wustl.edu	37	5	145510625	145510625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020117.9	-1	reviewed	p.M815T	1.000	367	0%	100	10%	-	-	-	-	-	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
LARS	51520	genome.wustl.edu	37	5	145524035	145524035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020117.9	-1	reviewed	p.T552I	1.000	490	0.2%	246	28.5%	-	-	benign(0.382)	tolerated(0.3)	neutral(0.150)	superfamily_Nucleotidylyl transferase
RBM27	54439	genome.wustl.edu	37	5	145641198	145641198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018989.1	+1	validated	p.R673S	0.966	82	0%	102	29.4%	-	-	probably_damaging(0.985)	tolerated(0.14)	deleterious(0.681)	superfamily_SSF54928
POU4F3	5459	genome.wustl.edu	37	5	145719404	145719404	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002700.2	+1	reviewed	p.S138	0.997	46	0%	78	37.2%	-	-	-	-	-	NULL
POU4F3	5459	genome.wustl.edu	37	5	145719827	145719827	+	Silent	SNP	G	G	A	rs6885298	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002700.2	+1	reviewed	p.T279	1.000	39	0%	46	34.8%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TCERG1	10915	genome.wustl.edu	37	5	145836898	145836898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006706.3	+1	reviewed	p.K146N	1.000	97	0%	110	42.7%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain
TCERG1	10915	genome.wustl.edu	37	5	145843284	145843284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006706.3	+1	reviewed	p.I355L	1.000	220	0.5%	162	34%	-	-	benign(0.356)	tolerated(0.17)	neutral(0.172)	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	145979960	145979960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181676.2	-1	reviewed	p.S288L	1.000	211	0%	80	28.7%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMSmart_SM00320,superfamily_WD40 repeat-like
STK32A	202374	genome.wustl.edu	37	5	146752738	146752738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001112724.1	+1	validated	p.E262K	1.000	151	0%	39	28.2%	-	-	benign(0.124)	tolerated(0.68)	neutral(0.012)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPINK5	11005	genome.wustl.edu	37	5	147506616	147506616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127698.1	+1	reviewed	p.D1010Y	0.002	89	0%	54	27.8%	-	-	benign(0.372)	deleterious(0.03)	deleterious(0.483)	NULL
PCYOX1L	78991	genome.wustl.edu	37	5	148748123	148748123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024028.3	+1	validated	p.K464R	1.000	36	2.8%	66	28.8%	-	-	benign(0.41)	tolerated(1)	neutral(0.133)	HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain
PDE6A	5145	genome.wustl.edu	37	5	149313501	149313501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000440.2	-1	reviewed	p.R237C	0.741	90	0%	79	40.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF55781
SLC26A2	1836	genome.wustl.edu	37	5	149360152	149360152	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000112.3	+1	reviewed	p.P332	0.001	175	0%	54	25.9%	-	-	-	-	-	HMMPfam_Sulfate_transp
SLC6A7	6534	genome.wustl.edu	37	5	149585040	149585040	+	Missense_Mutation	SNP	G	G	A	rs145845903	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014228.3	+1	validated	p.V519I	0.964	48	0%	74	10.8%	-	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_SNF
TCOF1	6949	genome.wustl.edu	37	5	149756004	149756004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135243.1	+1	reviewed	p.G721S	0.024	82	0%	101	42.6%	-	-	probably_damaging(0.999)	tolerated(0.89)	deleterious(0.490)	HMMPfam_Treacle
TCOF1	6949	genome.wustl.edu	37	5	149758595	149758595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135243.1	+1	reviewed	p.S823F	0.039	56	0%	69	27.5%	-	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_Treacle
SYNPO	11346	genome.wustl.edu	37	5	150029010	150029010	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007286.5	+1	validated	p.P391	0.485	24	0%	47	21.3%	-	-	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150275179	150275179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052860.2	-1	reviewed	p.R541Q	0.999	170	0%	47	27.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF300	91975	genome.wustl.edu	37	5	150275935	150275935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052860.2	-1	reviewed	p.R289I	1.000	130	0%	36	41.7%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANXA6	309	genome.wustl.edu	37	5	150512689	150512689	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001155.3	-1	reviewed	p.I202	1.000	167	0%	118	28.8%	-	-	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
SLC36A3	285641	genome.wustl.edu	37	5	150657052	150657052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145017.1	-1	validated	p.G480C	1.000	79	0%	31	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
SLC36A2	153201	genome.wustl.edu	37	5	150722447	150722447	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181776.2	-1	validated	e4+2	1.000	168	0%	90	37.8%	-	-	-	-	-	-
SLC36A2	153201	genome.wustl.edu	37	5	150722512	150722512	+	Missense_Mutation	SNP	G	G	A	rs148360560	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181776.2	-1	validated	p.T126M	0.685	190	0%	89	34.8%	-	-	possibly_damaging(0.792)	deleterious(0.01)	deleterious(0.703)	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150945615	150945615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001447.2	-1	reviewed	p.V960L	0.934	31	0%	40	27.5%	-	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150946865	150946865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001447.2	-1	reviewed	p.R543H	0.999	55	0%	46	34.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00112,superfamily_Cadherin-like
SPARC	6678	genome.wustl.edu	37	5	151049283	151049283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003118.2	-1	provisional	p.T131	1.000	118	0%	106	34.9%	-	-	-	-	-	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
NMUR2	56923	genome.wustl.edu	37	5	151783987	151783987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020167.4	-1	reviewed	p.T230A	0.821	110	0%	100	33%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GRIA1	2890	genome.wustl.edu	37	5	153085621	153085621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000827.3	+1	reviewed	p.S606Y	1.000	152	0%	50	36%	-	-	benign(0.111)	tolerated(0.1)	neutral(0.295)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
HAND1	9421	genome.wustl.edu	37	5	153857447	153857447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004821.2	-1	reviewed	p.Y41C	1.000	17	0%	31	29%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LARP1	23367	genome.wustl.edu	37	5	154173213	154173213	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015315.3	+1	validated	p.E189	0.996	62	0%	117	39.3%	-	-	-	-	-	NULL
C5orf4	10826	genome.wustl.edu	37	5	154214268	154214268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032385.3	-1	validated	p.G54D	1.000	65	0%	60	35%	-	-	possibly_damaging(0.6)	tolerated(0.08)	deleterious(0.507)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154308151	154308151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015465.3	-1	validated	p.R284C	1.000	105	0%	102	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
TIMD4	91937	genome.wustl.edu	37	5	156378655	156378655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138379.2	-1	validated	p.L183I	0.000	972	0%	438	40.6%	-	-	probably_damaging(0.979)	tolerated(0.43)	neutral(0.435)	NULL
FAM71B	153745	genome.wustl.edu	37	5	156589750	156589750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130899.2	-1	validated	p.S509L	0.867	309	0%	134	32.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156788522	156788522	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037332.2	+1	validated	p.Y985	0.928	84	0%	31	25.8%	-	-	-	-	-	HMMPfam_FragX_IP
ADAM19	8728	genome.wustl.edu	37	5	156908807	156908807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033274.2	-1	reviewed	p.A899T	0.001	20	0%	51	47.1%	-	-	benign(0.012)	tolerated(0.38)	neutral(0.018)	NULL
CLINT1	9685	genome.wustl.edu	37	5	157244525	157244525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014666.2	-1	validated	p.I24	0.060	96	0%	27	44.4%	-	-	-	-	-	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
EBF1	1879	genome.wustl.edu	37	5	158135078	158135078	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024007.3	-1	validated	p.A551	0.967	302	0%	140	37.1%	-	-	-	-	-	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159519686	159519686	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130864.1	-1	validated	p.D657	1.000	59	1.7%	22	40.9%	-	-	-	-	-	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
FABP6	2172	genome.wustl.edu	37	5	159626055	159626055	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130958.1	+1	reviewed	e1-1	0.000	39	0%	69	30.4%	-	-	-	-	-	-
C1QTNF2	114898	genome.wustl.edu	37	5	159776183	159776183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031908.4	-1	validated	p.E329K	1.000	38	0%	47	36.2%	-	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821556	159821556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022090.3	-1	validated	p.F314L	0.998	55	0%	27	44.4%	-	-	benign(0.019)	tolerated(1)	neutral(0.001)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159822214	159822214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022090.3	-1	validated	p.S95L	0.960	93	0%	57	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159822375	159822375	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022090.3	-1	validated	p.D41	0.912	93	0%	65	32.3%	-	-	-	-	-	NULL
GABRB2	2561	genome.wustl.edu	37	5	160761811	160761811	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021911.2	-1	reviewed	p.S260	1.000	268	0%	107	46.7%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRG2	2566	genome.wustl.edu	37	5	161495013	161495013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198903.2	+1	reviewed	p.S3L	1.000	41	0%	29	41.4%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
GABRG2	2566	genome.wustl.edu	37	5	161528321	161528321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198903.2	+1	reviewed	p.S210N	1.000	122	0%	37	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRG2	2566	genome.wustl.edu	37	5	161530948	161530948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198903.2	+1	reviewed	p.V269M	1.000	232	0%	42	31%	-	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ENSG00000229119	0	genome.wustl.edu	37	5	165809576	165809576	+	Silent	SNP	G	G	A	rs188938089	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000449646	+1	known	p.S89	0.998	92	0%	72	31.9%	-	-	-	-	-	HMMPfam_Ribosomal_60s
ODZ2	57451	genome.wustl.edu	37	5	167551991	167551991	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.T715	0.001	52	0%	62	35.5%	-	-	-	-	-	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_2,superfamily_EGF/Laminin
ODZ2	57451	genome.wustl.edu	37	5	167645178	167645178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.S1419T	1.000	87	0%	59	27.1%	-	-	benign(0.185)	tolerated(0.22)	neutral(0.059)	HMMPfam_NHL,superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
ODZ2	57451	genome.wustl.edu	37	5	167645837	167645837	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.R1638	1.000	48	0%	32	50%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674064	167674064	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.F2031	0.890	56	0%	50	40%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674559	167674559	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.Y2196	0.654	94	0%	80	31.2%	-	-	-	-	-	HMMPfam_RHS_repeat
ODZ2	57451	genome.wustl.edu	37	5	167689425	167689425	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122679.1	+1	inferred	p.S2636	0.998	27	0%	37	40.5%	-	-	-	-	-	NULL
WWC1	23286	genome.wustl.edu	37	5	167841447	167841447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015238.2	+1	reviewed	p.E346K	1.000	13	0%	17	41.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RARS	5917	genome.wustl.edu	37	5	167944985	167944985	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002887.3	+1	reviewed	p.L597	0.993	90	0%	56	48.2%	-	-	-	-	-	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
PANK3	79646	genome.wustl.edu	37	5	167995887	167995887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024594.2	-1	reviewed	p.R49W	1.000	153	0%	109	22.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fumble,superfamily_SSF53067
CCDC99	54908	genome.wustl.edu	37	5	169023625	169023625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017785.4	+1	validated	p.R318W	1.000	104	0%	24	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EFCAB9	285588	genome.wustl.edu	37	5	171627606	171627606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000398186	+1	known	p.R108W	1.000	173	0%	94	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF47473
UBTD2	92181	genome.wustl.edu	37	5	171639220	171639220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152277.2	-1	validated	p.E107*	1.000	73	0%	36	25%	-	-	-	-	-	NULL
SH3PXD2B	285590	genome.wustl.edu	37	5	171765538	171765538	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017995.2	-1	validated	p.A857	0.844	82	0%	130	15.4%	-	-	-	-	-	HMMSmart_SH3,superfamily_SH3
NKX2-5	1482	genome.wustl.edu	37	5	172661979	172661979	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004387.3	-1	reviewed	p.R36	0.998	14	0%	21	38.1%	-	-	-	-	-	NULL
CPEB4	80315	genome.wustl.edu	37	5	173317741	173317741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030627.2	+1	validated	p.K335N	1.000	78	0%	66	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5orf25	375484	genome.wustl.edu	37	5	175764133	175764133	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198567.4	+1	validated	p.Y365	0.941	347	0.3%	162	40.7%	-	-	-	-	-	NULL
HIGD2A	192286	genome.wustl.edu	37	5	175815937	175815937	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138820.2	+1	provisional	p.F39	0.906	81	0%	103	35%	-	-	-	-	-	HMMPfam_HIG_1_N
CDHR2	54825	genome.wustl.edu	37	5	176004701	176004701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017675.4	+1	reviewed	p.D472N	0.954	83	0%	125	25.6%	-	-	benign(0.108)	tolerated(0.53)	neutral(0.016)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
CDHR2	54825	genome.wustl.edu	37	5	176016617	176016617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017675.4	+1	reviewed	p.A1069V	0.002	38	0%	57	36.8%	-	-	benign(0.117)	tolerated(0.07)	neutral(0.329)	NULL
TSPAN17	26262	genome.wustl.edu	37	5	176081911	176081911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012171.1	+1	validated	p.A158T	1.000	36	0%	88	36.4%	-	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TSPAN17	26262	genome.wustl.edu	37	5	176082006	176082006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000507471	+1	known	p.A122V	0.971	34	0%	64	34.4%	-	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
UNC5A	90249	genome.wustl.edu	37	5	176305120	176305120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133369.2	+1	validated	p.A621T	0.992	22	0%	28	17.9%	-	-	possibly_damaging(0.811)	deleterious(0.03)	deleterious(0.670)	NULL
HK3	3101	genome.wustl.edu	37	5	176309059	176309059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002115.2	-1	reviewed	p.R708H	0.134	24	0%	38	39.5%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Hexokinase_2,superfamily_SSF53067
HK3	3101	genome.wustl.edu	37	5	176323125	176323125	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002115.2	-1	reviewed	p.G12	0.001	32	0%	33	42.4%	-	-	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176562201	176562201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022455.4	+1	reviewed	p.G33S	1.000	96	0%	159	41.5%	-	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
NSD1	64324	genome.wustl.edu	37	5	176562924	176562924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022455.4	+1	reviewed	p.I274L	1.000	127	0%	211	13.3%	-	-	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
NSD1	64324	genome.wustl.edu	37	5	176636883	176636883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022455.4	+1	reviewed	p.A495T	0.952	86	0%	43	39.5%	-	-	benign(0.129)	deleterious(0)	neutral(0.456)	NULL
NSD1	64324	genome.wustl.edu	37	5	176638884	176638884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022455.4	+1	reviewed	p.R1162C	1.000	89	0%	61	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM193B	54540	genome.wustl.edu	37	5	176963554	176963554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019057.3	-1	validated	p.P181H	0.999	43	0%	78	15.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RMND5B	64777	genome.wustl.edu	37	5	177574603	177574603	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022762.3	+1	provisional	p.C310	1.000	153	0%	220	39.5%	-	-	-	-	-	NULL
NHP2	55651	genome.wustl.edu	37	5	177576741	177576741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017838.3	-1	reviewed	p.E145	0.980	30	0%	50	38%	-	-	-	-	-	superfamily_SSF55315
HNRNPAB	3182	genome.wustl.edu	37	5	177637241	177637241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031266.2	+1	reviewed	p.G299V	1.000	42	0%	63	39.7%	-	-	unknown(0)	deleterious(0.01)	-	NULL
COL23A1	91522	genome.wustl.edu	37	5	177669353	177669353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173465.3	-1	validated	p.R495C	0.999	141	0%	273	34.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Collagen
COL23A1	91522	genome.wustl.edu	37	5	177688728	177688728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173465.3	-1	validated	p.P233S	0.945	43	0%	73	39.7%	-	-	unknown(0)	tolerated(0.06)	-	HMMPfam_Collagen
COL23A1	91522	genome.wustl.edu	37	5	177689227	177689227	+	Silent	SNP	G	G	A	rs140937912		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173465.3	-1	validated	p.D222	0.001	76	0%	108	37%	-	-	-	-	-	HMMPfam_Collagen
CLK4	57396	genome.wustl.edu	37	5	178045557	178045557	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020666.2	-1	reviewed	p.S128	1.000	163	0.6%	95	37.9%	-	-	-	-	-	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178310658	178310658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058230.2	+1	validated	p.R402I	1.000	157	0%	82	26.8%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178310994	178310994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058230.2	+1	validated	p.R514I	0.967	189	0%	86	32.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP2	80108	genome.wustl.edu	37	5	178359678	178359678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030613.2	+1	provisional	p.R455Q	0.071	117	0%	71	43.7%	-	-	benign(0.272)	tolerated(0.94)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178391891	178391891	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182594.2	+1	validated	p.S162	0.068	104	0%	43	25.6%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392448	178392448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182594.2	+1	validated	p.R348I	1.000	133	0%	101	37.6%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392905	178392905	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182594.2	+1	validated	p.K500	0.014	93	0%	44	27.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178460178	178460178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136116.1	+1	provisional	p.S410I	0.634	140	0%	67	47.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ADAMTS2	9509	genome.wustl.edu	37	5	178559847	178559847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014244.2	-1	reviewed	p.V714M	1.000	44	0%	93	38.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ADAMTS2	9509	genome.wustl.edu	37	5	178580625	178580625	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014244.2	-1	reviewed	e9-1	1.000	17	0%	38	39.5%	-	-	-	-	-	-
RUFY1	80230	genome.wustl.edu	37	5	178996309	178996309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025158.3	+1	validated	p.F237L	1.000	381	0%	390	34.9%	-	-	possibly_damaging(0.816)	deleterious(0.01)	deleterious(0.714)	HMMPfam_RUN,HMMSmart_SM00593
C5orf60	285679	genome.wustl.edu	37	5	179069422	179069422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142306.1	-1	provisional	p.A251V	0.005	208	0%	297	34.7%	-	-	probably_damaging(0.965)	-	-	NULL
C5orf60	285679	genome.wustl.edu	37	5	179071901	179071901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142306.1	-1	provisional	p.V41I	0.002	80	0%	110	38.2%	-	-	benign(0.001)	tolerated(0.93)	-	NULL
ENSG00000228259	0	genome.wustl.edu	37	5	179079013	179079013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000425471	+1	known	p.R166W	0.001	91	0%	122	41.8%	-	-	unknown(0)	tolerated(0.06)	-	NULL
MGAT4B	11282	genome.wustl.edu	37	5	179225278	179225278	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054013.3	-1	reviewed	e13-1	1.000	17	0%	36	19.4%	-	-	-	-	-	-
MGAT4B	11282	genome.wustl.edu	37	5	179225365	179225365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054013.3	-1	reviewed	p.D513N	0.893	16	0%	48	45.8%	-	-	benign(0.145)	deleterious(0)	neutral(0.457)	NULL
MGAT4B	11282	genome.wustl.edu	37	5	179228441	179228441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054013.3	-1	reviewed	p.V166M	1.000	7	0.000	35	0.343	-	-	unknown(0)	-	-	HMMPfam_Glyco_transf_54
TBC1D9B	23061	genome.wustl.edu	37	5	179320218	179320218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198868.2	-1	validated	p.A276V	0.997	23	0%	26	46.2%	-	-	probably_damaging(1)	tolerated(0.89)	deleterious(0.500)	NULL
RASGEF1C	255426	genome.wustl.edu	37	5	179546377	179546377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175062.3	-1	validated	p.I292	0.605	62	0%	112	34.8%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
GFPT2	9945	genome.wustl.edu	37	5	179743988	179743988	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005110.2	-1	provisional	p.G343	0.990	147	0%	248	10.9%	-	-	-	-	-	superfamily_SSF53697
GFPT2	9945	genome.wustl.edu	37	5	179757718	179757718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005110.2	-1	provisional	p.E172D	1.000	194	0%	268	36.9%	-	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	HMMPfam_GATase_2,superfamily_SSF56235
FLT4	2324	genome.wustl.edu	37	5	180043467	180043467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182925.4	-1	reviewed	p.A1040V	1.000	70	0%	167	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
MGAT1	4245	genome.wustl.edu	37	5	180219193	180219193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114617.1	-1	reviewed	p.R260H	1.000	7	0.000	16	0.375	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GNT-I,superfamily_SSF53448
LOC100289003	100289003	genome.wustl.edu	37	5	180219360	180219360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342577.1	+1	model	p.R467C	0.001	12	0%	21	52.4%	-	-	-	-	-	NULL
MGAT1	4245	genome.wustl.edu	37	5	180219586	180219586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114617.1	-1	reviewed	p.R129Q	0.996	7	0.000	12	0.500	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_GNT-I,superfamily_SSF53448
BTNL8	79908	genome.wustl.edu	37	5	180335855	180335855	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040462.2	+1	validated	p.L107M	0.000	116	0%	72	31.9%	-	-	possibly_damaging(0.822)	tolerated(0.09)	deleterious(0.607)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR2V1	26693	genome.wustl.edu	37	5	180551511	180551511	+	Missense_Mutation	SNP	C	C	T	rs142302517	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000329365	-1	known	p.R265H	0.001	68	0%	60	35%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR2V2	285659	genome.wustl.edu	37	5	180582769	180582769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206880.1	+1	provisional	p.S276Y	0.275	158	0%	183	19.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
IRF4	3662	genome.wustl.edu	37	6	394839	394839	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002460.2	+1	validated	p.G79*	1.000	52	0%	69	33.3%	-	-	-	-	-	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
EXOC2	55770	genome.wustl.edu	37	6	572544	572544	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018303.4	-1	reviewed	p.Y473	0.999	112	0%	99	38.4%	-	-	-	-	-	NULL
FOXF2	2295	genome.wustl.edu	37	6	1395031	1395031	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001452.1	+1	reviewed	p.S424	0.861	191	0%	357	39.8%	-	-	-	-	-	NULL
GMDS	2762	genome.wustl.edu	37	6	1742725	1742725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001500.2	-1	validated	p.F289L	0.544	157	0%	115	28.7%	-	-	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	superfamily_NAD(P)-bd
MYLK4	340156	genome.wustl.edu	37	6	2683359	2683359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012418.3	-1	validated	p.E195K	1.000	131	0%	90	35.6%	-	-	benign(0.379)	deleterious(0.03)	deleterious(0.485)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYLK4	340156	genome.wustl.edu	37	6	2689154	2689154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012418.3	-1	validated	p.R91H	0.999	140	0%	147	38.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Protein kinase-like (PK-like)
MYLK4	340156	genome.wustl.edu	37	6	2693021	2693021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012418.3	-1	validated	p.A78T	0.001	124	0%	144	28.5%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	superfamily_Protein kinase-like (PK-like)
SERPINB1	1992	genome.wustl.edu	37	6	2833852	2833852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030666.2	-1	provisional	p.S377Y	0.033	81	0%	51	41.2%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
TUBB2A	7280	genome.wustl.edu	37	6	3155921	3155921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001069.2	-1	validated	p.T72I	1.000	57	0%	115	33.9%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PXDC1	221749	genome.wustl.edu	37	6	3723871	3723871	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000380277	-1	known	p.R174K	1.000	128	0%	199	36.2%	-	-	-	-	-	NULL
C6orf201	404220	genome.wustl.edu	37	6	4099417	4099417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085401.1	+1	validated	p.S90Y	0.992	97	0%	79	12.7%	-	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
CDYL	9425	genome.wustl.edu	37	6	4937880	4937880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004824.3	+1	reviewed	p.V344I	1.000	107	0%	87	36.8%	-	-	benign(0.023)	tolerated(0.3)	neutral(0.030)	HMMPfam_ECH,superfamily_SSF52096
RPP40	10799	genome.wustl.edu	37	6	5002383	5002383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006638.2	-1	validated	p.L74F	1.000	196	0%	220	36.4%	-	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_Ribonuc_P_40
RREB1	6239	genome.wustl.edu	37	6	7230637	7230637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003699.3	+1	reviewed	p.R769C	1.000	11	0%	16	25%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CAGE1	285782	genome.wustl.edu	37	6	7373965	7373965	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205864.2	-1	validated	p.E227*	0.377	251	0%	115	41.7%	-	-	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7585257	7585257	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004415.2	+1	reviewed	p.E2588*	0.922	115	0%	163	39.3%	-	-	-	-	-	superfamily_Plakin repeat
DSP	1832	genome.wustl.edu	37	6	7585297	7585297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004415.2	+1	reviewed	p.N2601T	1.000	109	0%	137	42.3%	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	superfamily_Plakin repeat
TXNDC5	81567	genome.wustl.edu	37	6	7891942	7891942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030810.2	-1	reviewed	p.P215L	1.000	65	0%	77	46.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1
MUTED	63915	genome.wustl.edu	37	6	8041462	8041462	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201280.1	-1	reviewed	p.L79	0.622	162	0%	109	28.4%	-	-	-	-	-	NULL
MUTED	63915	genome.wustl.edu	37	6	8062775	8062775	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201280.1	-1	reviewed	p.E63*	1.000	63	0%	82	39%	-	-	-	-	-	NULL
MAK	4117	genome.wustl.edu	37	6	10796294	10796294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005906.3	-1	reviewed	p.K360N	0.994	192	0%	119	32.8%	-	-	benign(0.007)	tolerated(0.4)	neutral(0.016)	NULL
ERVFRD-1	405754	genome.wustl.edu	37	6	11104045	11104045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207582.2	-1	validated	p.G500D	0.727	102	0%	85	37.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TLV_coat
TMEM170B	100113407	genome.wustl.edu	37	6	11575676	11575676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100829.1	+1	validated	p.A94V	0.998	224	0%	45	37.8%	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_Tmemb_170
HIVEP1	3096	genome.wustl.edu	37	6	12164457	12164457	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002114.2	+1	validated	p.S2640	0.000	58	0%	36	33.3%	-	-	-	-	-	NULL
EDN1	1906	genome.wustl.edu	37	6	12294262	12294262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001955.4	+1	reviewed	p.R108G	0.817	61	0%	47	14.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00272
LOC100289173	100289173	genome.wustl.edu	37	6	12514847	12514847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342615.1	-1	model	p.S10L	1.000	34	0%	32	37.5%	-	-	-	-	-	NULL
SIRT5	23408	genome.wustl.edu	37	6	13601175	13601175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012241.3	+1	reviewed	p.R284I	0.225	77	0%	71	9.9%	-	-	benign(0.01)	tolerated(0.17)	neutral(0.059)	superfamily_DHS-like NAD/FAD-binding domain
JARID2	3720	genome.wustl.edu	37	6	15497183	15497183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004973.2	+1	reviewed	p.S576L	1.000	19	0%	57	35.1%	-	-	benign(0.042)	tolerated(0.17)	neutral(0.061)	HMMPfam_JmjN,HMMSmart_SM00545
DTNBP1	84062	genome.wustl.edu	37	6	15637985	15637985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032122.3	-1	reviewed	p.S71I	0.978	105	0%	55	18.2%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
NUP153	9972	genome.wustl.edu	37	6	17665546	17665546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005124.2	-1	reviewed	p.S380I	0.941	196	0%	94	28.7%	-	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_Nup153
KIF13A	63971	genome.wustl.edu	37	6	17855718	17855718	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022113.4	-1	validated	p.S148	1.000	47	0%	33	33.3%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF144B	255488	genome.wustl.edu	37	6	18465268	18465268	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182757.2	+1	validated	p.K294	1.000	215	0%	89	30.3%	-	-	-	-	-	NULL
MIR548A1	693125	genome.wustl.edu	37	6	18572072	18572072	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000385041	+1	known	NULL	0.001	76	0%	18	61.1%	-	-	-	-	-	-
E2F3	1871	genome.wustl.edu	37	6	20490430	20490430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001949.3	+1	reviewed	p.D389E	0.956	55	0%	54	48.1%	-	-	benign(0.002)	tolerated(1)	-	NULL
PRL	5617	genome.wustl.edu	37	6	22297203	22297203	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000948.4	-1	validated	p.I3	0.049	147	0%	111	43.2%	-	-	-	-	-	NULL
HIST1H2AA	221613	genome.wustl.edu	37	6	25726746	25726746	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170745.3	-1	reviewed	p.R4*	0.000	559	0%	353	36.3%	-	-	-	-	-	HMMSmart_H2A,superfamily_Histone-fold
SLC17A3	10786	genome.wustl.edu	37	6	25845645	25845645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098486.1	-1	validated	p.E488*	0.999	164	0%	41	39%	-	-	-	-	-	NULL
TRIM38	10475	genome.wustl.edu	37	6	25969632	25969632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006355.2	+1	reviewed	p.R164Q	0.021	75	0%	35	28.6%	-	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
HIST1H2AD	3013	genome.wustl.edu	37	6	26199345	26199345	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021065.2	-1	reviewed	p.R43*	1.000	71	0%	114	43%	-	-	-	-	-	HMMSmart_H2A,HMMPfam_Histone,superfamily_Histone-fold
HIST1H4G	8369	genome.wustl.edu	37	6	26247163	26247163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003547.2	-1	reviewed	p.G15S	1.000	46	0%	33	33.3%	-	-	unknown(0)	deleterious(0)	-	superfamily_Histone-fold
BTN3A3	10384	genome.wustl.edu	37	6	26446038	26446038	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006994.4	+1	validated	p.S180	0.003	175	0.6%	109	14.7%	-	-	-	-	-	superfamily_SSF48726
BTN2A1	11120	genome.wustl.edu	37	6	26463515	26463515	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007049.2	+1	reviewed	p.D158	0.028	48	0%	31	45.2%	-	-	-	-	-	superfamily_Immunoglobulin
BTN2A1	11120	genome.wustl.edu	37	6	26468781	26468781	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000265424	+1	known	p.S483*	0.002	84	0%	62	32.3%	-	-	-	-	-	HMMSmart_SPRY
ZNF322	79692	genome.wustl.edu	37	6	26638434	26638434	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024639.3	-1	validated	p.G116	0.997	186	0%	80	23.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HIST1H2AH	85235	genome.wustl.edu	37	6	27114961	27114961	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080596.1	+1	reviewed	p.R18	0.923	61	0%	102	37.3%	-	-	-	-	-	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
POM121L2	94026	genome.wustl.edu	37	6	27279812	27279812	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444565	-1	known	p.R46	0.293	34	0%	56	28.6%	-	-	-	-	-	NULL
ZNF391	346157	genome.wustl.edu	37	6	27368394	27368394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001076781.1	+1	validated	p.G82E	0.007	93	0%	60	35%	-	-	benign(0.011)	tolerated(0.28)	neutral(0.032)	NULL
OR2B2	81697	genome.wustl.edu	37	6	27879581	27879581	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033057.2	-1	validated	p.E173*	0.014	91	0%	52	40.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2B6	26212	genome.wustl.edu	37	6	27925788	27925788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012367.1	+1	provisional	p.S257F	0.620	204	0%	73	34.2%	-	-	benign(0.023)	tolerated(0.62)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF165	7718	genome.wustl.edu	37	6	28056966	28056966	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003447.3	+1	reviewed	p.R392	0.133	83	0%	91	35.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN16	80345	genome.wustl.edu	37	6	28093382	28093382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025231.1	+1	provisional	p.G54E	0.996	86	0%	47	27.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SCAN,HMMSmart_SCAN
ZKSCAN4	387032	genome.wustl.edu	37	6	28213291	28213291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019110.3	-1	provisional	p.S414N	0.448	159	0%	107	13.1%	-	-	possibly_damaging(0.82)	deleterious(0.02)	deleterious(0.694)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF187	7741	genome.wustl.edu	37	6	28244231	28244231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152736.4	+1	validated	p.Q131H	0.971	113	0%	96	44.8%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF323	64288	genome.wustl.edu	37	6	28297173	28297173	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135215.1	-1	validated	p.Q96	0.992	86	0%	44	29.5%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZNF323	64288	genome.wustl.edu	37	6	28297350	28297350	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135215.1	-1	validated	p.A37	0.001	49	0%	30	33.3%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZKSCAN3	80317	genome.wustl.edu	37	6	28327762	28327762	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024493.2	+1	validated	p.P133	0.942	73	0%	110	30%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZSCAN12	9753	genome.wustl.edu	37	6	28358885	28358885	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000361028	-1	known	p.S394	0.082	119	0.8%	80	33.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GPX6	257202	genome.wustl.edu	37	6	28473506	28473506	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182701.1	-1	reviewed	p.E145*	0.994	154	0%	207	28%	-	-	-	-	-	HMMPfam_GSHPx,superfamily_Thioredoxin-like
GPX5	2880	genome.wustl.edu	37	6	28499659	28499659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001509.2	+1	reviewed	p.L116F	1.000	77	0%	36	47.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GSHPx,superfamily_Thiordxn-like_fd
SCAND3	114821	genome.wustl.edu	37	6	28539912	28539912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052923.1	-1	provisional	p.K1252Q	1.000	70	0%	24	37.5%	-	-	possibly_damaging(0.793)	tolerated(0.3)	neutral(0.327)	HMMPfam_hATC
SCAND3	114821	genome.wustl.edu	37	6	28543439	28543439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052923.1	-1	provisional	p.L348P	0.996	297	0%	95	29.5%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAS1L	116511	genome.wustl.edu	37	6	29454929	29454929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052967.1	-1	provisional	p.L251M	0.001	31	0%	21	38.1%	-	-	probably_damaging(0.989)	tolerated(0.22)	deleterious(0.481)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABBR1	2550	genome.wustl.edu	37	6	29571294	29571294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000485026	-1	known	p.S172I	0.000	8	0.000	11	0.455	-	-	unknown(0)	deleterious(0)	-	NULL
TRIM31	11074	genome.wustl.edu	37	6	30078229	30078229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007028.3	-1	reviewed	p.L247R	0.212	105	0%	120	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDR1	780	genome.wustl.edu	37	6	30862315	30862315	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013994.2	+1	reviewed	p.T460	0.703	48	0%	75	44%	-	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30919940	30919940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080870.3	+1	validated	p.E75D	0.001	245	0%	251	39%	-	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	NULL
MUC21	394263	genome.wustl.edu	37	6	30954108	30954108	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010909.2	+1	validated	p.V52	0.000	116	0%	120	39.2%	-	-	-	-	-	NULL
ATP6V1G2	534	genome.wustl.edu	37	6	31513344	31513344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130463.2	-1	reviewed	p.Q66H	0.990	30	0%	47	53.2%	-	-	benign(0.242)	tolerated(0.46)	neutral(0.037)	HMMPfam_V-ATPase_G
MSH5	4439	genome.wustl.edu	37	6	31712014	31712014	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000463144	+1	known	p.R119W	0.656	113	0%	155	36.1%	-	-	-	-	-	NULL
MSH5	4439	genome.wustl.edu	37	6	31729606	31729606	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025259.5	+1	reviewed	p.T748	0.997	18	0.000	9	0.556	-	-	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
ENSG00000201555	0	genome.wustl.edu	37	6	31746625	31746625	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000364685	-1	novel	NULL	0.178	5	0.000	12	0.583	-	-	-	-	-	-
TNXB	7148	genome.wustl.edu	37	6	32023743	32023743	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019105.6	-1	reviewed	p.G2784	0.995	14	0%	51	19.6%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ATF6B	1388	genome.wustl.edu	37	6	32088774	32088774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004381.4	-1	reviewed	p.G231D	0.751	83	0%	81	35.8%	-	-	benign(0.167)	tolerated(0.12)	neutral(0.276)	NULL
PBX2	5089	genome.wustl.edu	37	6	32155552	32155552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002586.4	-1	reviewed	p.R248C	1.000	13	0%	11	45.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PSMB8	5696	genome.wustl.edu	37	6	32812187	32812187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004159.4	-1	reviewed	p.L2F	0.276	95	0%	121	38%	-	-	unknown(0)	-	-	NULL
TAP1	6890	genome.wustl.edu	37	6	32818159	32818159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000593.5	-1	reviewed	p.E456*	0.841	143	0%	203	36%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
LOC100289525	100289525	genome.wustl.edu	37	6	33179677	33179677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342641.1	-1	model	p.G82S	0.069	45	0%	62	38.7%	-	-	-	-	-	NULL
VPS52	6293	genome.wustl.edu	37	6	33219410	33219410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022553.4	-1	reviewed	p.R637Q	1.000	114	0%	93	31.2%	-	-	benign(0.063)	deleterious(0.04)	neutral(0.353)	NULL
VPS52	6293	genome.wustl.edu	37	6	33235040	33235040	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022553.4	-1	reviewed	p.R350	0.204	113	0%	113	40.7%	-	-	-	-	-	HMMPfam_Vps52
RPS18	6222	genome.wustl.edu	37	6	33240411	33240411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022551.2	+1	reviewed	p.V4M	1.000	76	0%	103	33%	-	-	benign(0.01)	tolerated(0.06)	neutral(0.323)	NULL
WDR46	9277	genome.wustl.edu	37	6	33256734	33256734	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005452.5	-1	validated	p.P42	0.990	55	0%	86	29.1%	-	-	-	-	-	NULL
RGL2	5863	genome.wustl.edu	37	6	33260257	33260257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004761.3	-1	validated	p.S691F	0.335	102	0%	144	30.6%	-	-	benign(0.013)	deleterious(0.02)	neutral(0.384)	HMMPfam_RA,HMMSmart_SM00314,superfamily_Ubiquitin-like
DAXX	1616	genome.wustl.edu	37	6	33287875	33287875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141970.1	-1	reviewed	p.D472Y	0.998	263	0%	330	29.7%	-	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Daxx
DAXX	1616	genome.wustl.edu	37	6	33288949	33288949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141970.1	-1	reviewed	p.E213D	1.000	83	0%	192	38%	-	-	unknown(0)	tolerated(0.07)	-	HMMPfam_Daxx
ITPR3	3710	genome.wustl.edu	37	6	33655097	33655097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002224.2	+1	validated	p.A2057V	1.000	19	0%	51	35.3%	-	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
ITPR3	3710	genome.wustl.edu	37	6	33662757	33662757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002224.2	+1	validated	p.E2614D	0.842	30	0%	69	30.4%	-	-	benign(0.003)	tolerated(0.82)	neutral(0.001)	NULL
IP6K3	117283	genome.wustl.edu	37	6	33693311	33693311	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142883.1	-1	reviewed	p.G224	0.867	50	0%	72	40.3%	-	-	-	-	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
MLN	4295	genome.wustl.edu	37	6	33766917	33766917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002418.2	-1	reviewed	p.E67K	0.012	250	0%	338	43.5%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Motilin_assoc
GRM4	2914	genome.wustl.edu	37	6	34100963	34100963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000841.1	-1	reviewed	p.R104H	1.000	35	0%	56	41.1%	-	-	possibly_damaging(0.618)	tolerated(1)	neutral(0.215)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
C6orf106	64771	genome.wustl.edu	37	6	34614409	34614409	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024294.2	-1	validated	p.R160	0.998	77	0%	45	35.6%	-	-	-	-	-	NULL
TEAD3	7005	genome.wustl.edu	37	6	35444153	35444153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000402886	-1	known	p.R158C	1.000	27	0%	59	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TEA
ARMC12	221481	genome.wustl.edu	37	6	35716407	35716407	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145028.3	+1	predicted	p.G288	0.986	64	0%	49	36.7%	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
LHFPL5	222662	genome.wustl.edu	37	6	35782502	35782502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182548.3	+1	reviewed	p.V198M	0.979	47	0%	41	48.8%	-	-	possibly_damaging(0.843)	tolerated(0.15)	deleterious(0.564)	HMMPfam_L_HGMIC_fpl
SRPK1	6732	genome.wustl.edu	37	6	35803116	35803116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003137.3	-1	reviewed	p.A645T	0.885	108	0%	48	45.8%	-	-	benign(0.031)	tolerated(0.15)	neutral(0.242)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SRPK1	6732	genome.wustl.edu	37	6	35840345	35840345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003137.3	-1	reviewed	p.S249Y	1.000	52	0%	54	18.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPK13	5603	genome.wustl.edu	37	6	36107128	36107128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002754.3	+1	reviewed	p.R359H	0.999	44	0%	55	40%	-	-	possibly_damaging(0.934)	deleterious(0.03)	deleterious(0.744)	NULL
BRPF3	27154	genome.wustl.edu	37	6	36168113	36168113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015695.2	+1	validated	p.R5H	1.000	36	0%	58	44.8%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
STK38	11329	genome.wustl.edu	37	6	36465557	36465557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007271.2	-1	provisional	p.R391K	1.000	59	0%	31	35.5%	-	-	probably_damaging(0.974)	tolerated(0.08)	deleterious(0.716)	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like)
FGD2	221472	genome.wustl.edu	37	6	36976841	36976841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173558.3	+1	validated	p.Q100H	1.000	15	0%	31	41.9%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_DBL homology domain (DH-domain)
FGD2	221472	genome.wustl.edu	37	6	36978772	36978772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173558.3	+1	validated	p.Q108H	0.940	40	0%	62	32.3%	-	-	benign(0.025)	tolerated(0.19)	neutral(0.051)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FGD2	221472	genome.wustl.edu	37	6	36982430	36982430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173558.3	+1	validated	p.D278N	1.000	65	0%	90	30%	-	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FGD2	221472	genome.wustl.edu	37	6	36990098	36990098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000394459	+1	known	p.L96I	1.000	31	0%	36	22.2%	-	-	-	-	-	NULL
TBC1D22B	55633	genome.wustl.edu	37	6	37250723	37250723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017772.2	+1	validated	p.L223M	1.000	130	0%	73	13.7%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
RNF8	9025	genome.wustl.edu	37	6	37336828	37336828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003958.3	+1	reviewed	p.V270A	1.000	108	0%	56	25%	-	-	possibly_damaging(0.942)	tolerated(0.47)	neutral(0.398)	NULL
RNF8	9025	genome.wustl.edu	37	6	37339323	37339323	+	Missense_Mutation	SNP	G	G	T	rs112020220		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003958.3	+1	reviewed	p.K337N	1.000	120	0%	64	34.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CCDC167	154467	genome.wustl.edu	37	6	37452949	37452949	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138493.2	-1	validated	p.L22	1.000	24	0%	60	33.3%	-	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38820569	38820569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001371.2	+1	validated	p.I1639F	1.000	66	0%	32	37.5%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38841028	38841028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001371.2	+1	validated	p.R2282H	0.997	109	0%	36	25%	-	-	possibly_damaging(0.837)	tolerated(0.05)	deleterious(0.665)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38891867	38891867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001371.2	+1	validated	p.E3414K	1.000	300	0%	78	33.3%	-	-	benign(0.108)	tolerated(0.32)	neutral(0.033)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38950237	38950237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001371.2	+1	validated	p.K4100T	1.000	200	0%	57	35.1%	-	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_Dynein_heavy
DAAM2	23500	genome.wustl.edu	37	6	39867899	39867899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015345.2	+1	validated	p.F908C	1.000	51	0%	52	28.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
UNC5CL	222643	genome.wustl.edu	37	6	41001894	41001894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173561.1	-1	provisional	p.R138W	1.000	6	0.000	20	0.250	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_ZU5
NFYA	4800	genome.wustl.edu	37	6	41062196	41062196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002505.4	+1	reviewed	p.R317Q	1.000	128	0%	94	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBFB_NFYA,HMMSmart_SM00521
FRS3	10817	genome.wustl.edu	37	6	41738369	41738369	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006653.3	-1	reviewed	p.D489	1.000	113	0%	237	13.1%	-	-	-	-	-	NULL
FRS3	10817	genome.wustl.edu	37	6	41738447	41738447	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006653.3	-1	reviewed	p.T463	0.191	72	0%	158	38.6%	-	-	-	-	-	NULL
CCND3	896	genome.wustl.edu	37	6	41908179	41908179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001760.3	-1	reviewed	p.E115K	1.000	60	0%	88	44.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
GUCA1A	2978	genome.wustl.edu	37	6	42147004	42147004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000409.3	+1	reviewed	p.I157V	1.000	29	0%	48	47.9%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
TRERF1	55809	genome.wustl.edu	37	6	42224720	42224720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033502.2	-1	reviewed	p.N819K	1.000	262	0.4%	334	29.9%	-	-	benign(0.023)	tolerated(0.07)	neutral(0.320)	HMMPfam_ELM2
UBR2	23304	genome.wustl.edu	37	6	42600364	42600364	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015255.2	+1	reviewed	p.R452	1.000	105	0%	69	13%	-	-	-	-	-	NULL
UBR2	23304	genome.wustl.edu	37	6	42656092	42656092	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015255.2	+1	reviewed	p.Y1664	1.000	120	0%	178	31.5%	-	-	-	-	-	NULL
CNPY3	10695	genome.wustl.edu	37	6	42902334	42902334	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006586.3	+1	validated	p.K91	1.000	77	0%	79	36.7%	-	-	-	-	-	NULL
GNMT	27232	genome.wustl.edu	37	6	42930557	42930557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018960.4	+1	reviewed	p.G131D	0.608	123	0%	206	28.2%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_Methyltransf_12,superfamily_SSF53335
PPP2R5D	5528	genome.wustl.edu	37	6	42974777	42974777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006245.2	+1	reviewed	p.E151K	1.000	88	1.1%	134	36.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_B56
KLHDC3	116138	genome.wustl.edu	37	6	42988454	42988454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_057161.2	+1	reviewed	p.V378I	0.993	114	0%	196	13.3%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
CUL7	9820	genome.wustl.edu	37	6	43013126	43013126	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014780.4	-1	reviewed	p.T959	0.008	160	0%	239	31.8%	-	-	-	-	-	HMMPfam_APC10,superfamily_Gal_bind_like
KLC4	89953	genome.wustl.edu	37	6	43030856	43030856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201523.1	+1	validated	p.R172W	1.000	66	0%	114	16.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rab5-bind,superfamily_TPR-like
PTK7	5754	genome.wustl.edu	37	6	43106921	43106921	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002821.3	+1	reviewed	p.S470	0.727	64	0%	79	29.1%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CUL9	23113	genome.wustl.edu	37	6	43164484	43164484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015089.2	+1	validated	p.T896M	1.000	178	0%	138	37%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_ARM repeat
CUL9	23113	genome.wustl.edu	37	6	43168473	43168473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015089.2	+1	validated	p.S1183I	1.000	113	0%	120	40%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_APC10,superfamily_Galactose-binding domain-like
CUL9	23113	genome.wustl.edu	37	6	43182914	43182914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015089.2	+1	validated	p.C1929Y	1.000	28	0%	41	29.3%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	"PatternScan_CULLIN_1,superfamily_""Winged helix"" DNA-binding domain"
TTBK1	84630	genome.wustl.edu	37	6	43220488	43220488	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032538.1	+1	validated	p.I40	1.000	43	0%	110	43.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ZNF318	24149	genome.wustl.edu	37	6	43310566	43310566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014345.2	-1	validated	p.E1042K	0.479	206	0%	62	40.3%	-	-	possibly_damaging(0.895)	deleterious(0.02)	deleterious(0.736)	NULL
ABCC10	89845	genome.wustl.edu	37	6	43406489	43406489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033450.2	+1	reviewed	p.Y667H	1.000	104	0%	132	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCC10	89845	genome.wustl.edu	37	6	43417201	43417201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033450.2	+1	reviewed	p.K1387N	1.000	32	0%	69	43.5%	-	-	benign(0.068)	tolerated(0.06)	neutral(0.327)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
TJAP1	93643	genome.wustl.edu	37	6	43473433	43473433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080604.2	+1	reviewed	p.G495D	0.092	8	0.000	24	0.292	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
XPO5	57510	genome.wustl.edu	37	6	43492231	43492231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020750.2	-1	validated	p.R1152H	1.000	113	0%	123	36.6%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
XPO5	57510	genome.wustl.edu	37	6	43533424	43533424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020750.2	-1	validated	p.A295V	1.000	68	0%	54	46.3%	-	-	benign(0.008)	tolerated(0.76)	neutral(0.001)	superfamily_ARM repeat
MRPS18A	55168	genome.wustl.edu	37	6	43643270	43643270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018135.2	-1	reviewed	p.R113C	1.000	118	0%	139	38.1%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Ribosomal_S18,superfamily_Ribosomal_S18
SLC29A1	2030	genome.wustl.edu	37	6	44200635	44200635	+	Missense_Mutation	SNP	G	G	A	rs189979040	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001078174.1	+1	reviewed	p.R384H	0.000	48	0%	94	36.2%	-	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_Nucleoside_tran
HSP90AB1	3326	genome.wustl.edu	37	6	44217241	44217241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007355.2	+1	provisional	p.G92D	1.000	125	0%	203	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
HSP90AB1	3326	genome.wustl.edu	37	6	44219833	44219833	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007355.2	+1	provisional	p.Y520	1.000	147	0%	216	39.4%	-	-	-	-	-	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90
SLC35B2	347734	genome.wustl.edu	37	6	44224511	44224511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178148.2	-1	validated	p.F39S	0.998	57	0%	117	23.1%	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
CDC5L	988	genome.wustl.edu	37	6	44414399	44414399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001253.2	+1	reviewed	p.R787K	1.000	128	0.8%	48	22.9%	-	-	benign(0.128)	tolerated(0.26)	neutral(0.045)	NULL
RUNX2	860	genome.wustl.edu	37	6	45399649	45399649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024630.3	+1	reviewed	p.A226V	1.000	199	0%	105	51.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P53_like_DNA_bnd,HMMPfam_Runt
RUNX2	860	genome.wustl.edu	37	6	45399744	45399744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024630.3	+1	reviewed	p.R258W	1.000	164	0%	97	27.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P53_like_DNA_bnd,HMMPfam_Runt
RUNX2	860	genome.wustl.edu	37	6	45480144	45480144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024630.3	+1	reviewed	p.D409Y	1.000	72	0%	36	25%	-	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46659150	46659150	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010870.2	+1	validated	p.A1095	0.110	199	0%	198	36.9%	-	-	-	-	-	HMMPfam_TUDOR
MEP1A	4224	genome.wustl.edu	37	6	46801039	46801039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005588.2	+1	validated	p.R458Q	0.358	66	0%	34	32.4%	-	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
MEP1A	4224	genome.wustl.edu	37	6	46806754	46806754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005588.2	+1	validated	p.R708C	0.991	41	0%	34	44.1%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
GPR116	221395	genome.wustl.edu	37	6	46826134	46826134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098518.1	-1	validated	p.T1169N	1.000	46	0%	33	36.4%	-	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_7tm_2
GPR116	221395	genome.wustl.edu	37	6	46836826	46836826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098518.1	-1	validated	p.N472T	0.980	163	1.2%	51	51%	-	-	possibly_damaging(0.521)	tolerated(0.08)	deleterious(0.475)	superfamily_Immunoglobulin
CD2AP	23607	genome.wustl.edu	37	6	47544328	47544328	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012120.2	+1	reviewed	p.G266	0.717	144	0%	47	31.9%	-	-	-	-	-	superfamily_SH3
GPR115	221393	genome.wustl.edu	37	6	47682576	47682576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153838.3	+1	validated	p.T532I	0.960	166	0%	69	43.5%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_7tm_2
GPR115	221393	genome.wustl.edu	37	6	47682913	47682913	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153838.3	+1	validated	p.Q644	1.000	25	0%	15	46.7%	-	-	-	-	-	HMMPfam_7tm_2
MUT	4594	genome.wustl.edu	37	6	49403270	49403270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000255.3	-1	reviewed	p.A675T	1.000	68	0%	24	33.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain
C6orf141	135398	genome.wustl.edu	37	6	49518522	49518522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145652.1	+1	validated	p.A6V	0.002	19	0%	26	42.3%	-	-	possibly_damaging(0.515)	-	-	NULL
PGK2	5232	genome.wustl.edu	37	6	49754337	49754337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138733.4	-1	reviewed	p.F188L	0.999	145	0%	38	23.7%	-	-	benign(0.201)	tolerated(0.16)	neutral(0.079)	HMMPfam_PGK,superfamily_PGK
PGK2	5232	genome.wustl.edu	37	6	49754598	49754598	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138733.4	-1	reviewed	p.G101	0.032	158	0%	40	35%	-	-	-	-	-	HMMPfam_PGK,superfamily_PGK
DEFB133	403339	genome.wustl.edu	37	6	49913907	49913907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000398721	-1	known	p.C31	0.879	220	0%	86	18.6%	-	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51893134	51893134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138694.3	-1	reviewed	p.V1127A	0.918	68	0%	29	41.4%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00429,superfamily_E set domains
PKHD1	5314	genome.wustl.edu	37	6	51930773	51930773	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138694.3	-1	reviewed	e11+1	1.000	154	0%	100	55%	-	-	-	-	-	-
EFHC1	114327	genome.wustl.edu	37	6	52288824	52288824	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018100.3	+1	reviewed	p.G48	0.304	43	0%	34	35.3%	-	-	-	-	-	NULL
LOC647169	647169	genome.wustl.edu	37	6	52631198	52631198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_930196.2	-1	model	p.E131D	0.992	94	0%	28	25%	-	-	-	-	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
GCLC	2729	genome.wustl.edu	37	6	53373404	53373404	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001498.2	-1	reviewed	p.R312*	1.000	122	0%	79	32.9%	-	-	-	-	-	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase
MLIP	90523	genome.wustl.edu	37	6	54025383	54025383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138569.2	+1	validated	p.D274N	1.000	74	0%	22	40.9%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
MLIP	90523	genome.wustl.edu	37	6	54054695	54054695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138569.2	+1	validated	p.V323L	0.433	163	0%	78	23.1%	-	-	unknown(0)	tolerated(0.17)	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54804816	54804816	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010872.1	+1	validated	p.D349	1.000	51	0%	20	50%	-	-	-	-	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54805325	54805325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010872.1	+1	validated	p.R519Q	0.971	122	0%	39	30.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
COL21A1	81578	genome.wustl.edu	37	6	56035494	56035494	+	Missense_Mutation	SNP	C	C	T	rs142653960	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030820.3	-1	reviewed	p.V327I	0.666	195	0%	57	35.1%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00210
DST	667	genome.wustl.edu	37	6	56330954	56330954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015548.4	-1	reviewed	p.R4914W	0.944	203	0%	70	31.4%	-	-	probably_damaging(1)	-	-	HMMPfam_GAS2,HMMSmart_SM00243
DST	667	genome.wustl.edu	37	6	56380318	56380318	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015548.4	-1	reviewed	p.S3546*	0.005	199	0%	42	33.3%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56471503	56471503	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370769	-1	known	p.Y2430	0.339	109	0%	32	43.8%	-	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56485434	56485434	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001723.5	-1	reviewed	p.N1133T	0.813	178	0%	59	45.8%	-	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56919147	56919147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020931.2	+1	validated	p.R617H	0.011	25	0%	24	37.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012840	57012840	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031623.2	+1	validated	p.R653*	0.982	66	0%	19	47.4%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF451	26036	genome.wustl.edu	37	6	57017086	57017086	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031623.2	+1	validated	p.C940	0.997	155	0%	69	34.8%	-	-	-	-	-	NULL
RAB23	51715	genome.wustl.edu	37	6	57061346	57061346	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016277.3	-1	reviewed	p.V100	1.000	167	0%	95	9.5%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KHDRBS2	202559	genome.wustl.edu	37	6	62390966	62390966	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152688.2	-1	validated	e9-1	1.000	153	0%	27	25.9%	-	-	-	-	-	-
PHF3	23469	genome.wustl.edu	37	6	64423249	64423249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015153.2	+1	provisional	p.R1922I	1.000	81	0%	45	37.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PHF3	23469	genome.wustl.edu	37	6	64488097	64488097	+	Missense_Mutation	SNP	C	C	T	rs146094035	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000505138	+1	known	p.R168C	0.000	44	0%	11	36.4%	-	-	benign(0.29)	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	64498097	64498097	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000398580	-1	known	p.W313*	0.969	135	0%	38	34.2%	-	-	possibly_damaging(0.888)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	64516087	64516087	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000398580	-1	known	p.A241V	1.000	157	0%	45	35.6%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	65300283	65300283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142800.1	-1	reviewed	p.S1826Y	0.001	135	0%	26	46.2%	-	-	benign(0.238)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65301488	65301488	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142800.1	-1	reviewed	p.T1424	0.994	84	0%	22	36.4%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	66094383	66094383	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142800.1	-1	reviewed	p.G399*	0.968	151	0%	26	46.2%	-	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	66205225	66205225	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142800.1	-1	reviewed	p.Q27*	0.000	95	0%	27	37%	-	-	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	66205228	66205228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142800.1	-1	reviewed	p.R26W	0.000	96	0%	26	46.2%	-	-	benign(0.001)	-	-	NULL
BAI3	577	genome.wustl.edu	37	6	69703748	69703748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001704.2	+1	reviewed	p.R608I	1.000	155	0%	48	39.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
BAI3	577	genome.wustl.edu	37	6	70071236	70071236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001704.2	+1	reviewed	p.D1357	1.000	93	0%	22	36.4%	-	-	-	-	-	NULL
LMBRD1	55788	genome.wustl.edu	37	6	70410689	70410689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018368.3	-1	reviewed	p.R386*	1.000	63	0%	12	33.3%	-	-	-	-	-	HMMPfam_LMBR1
COL19A1	1310	genome.wustl.edu	37	6	70831821	70831821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001858.4	+1	reviewed	p.N443S	0.999	69	0%	15	46.7%	-	-	benign(0.35)	-	-	NULL
FAM135A	57579	genome.wustl.edu	37	6	71195924	71195924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020819.4	+1	validated	p.R250Q	0.971	105	0%	16	50%	-	-	benign(0.242)	tolerated(0.33)	neutral(0.049)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72889550	72889550	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014989.4	+1	reviewed	p.S248	0.003	32	0%	47	27.7%	-	-	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72962485	72962485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014989.4	+1	reviewed	p.S907N	1.000	313	0%	72	15.3%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72993764	72993764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014989.4	+1	reviewed	p.S1166Y	1.000	183	0%	67	29.9%	-	-	benign(0.113)	tolerated(0.83)	neutral(0.009)	NULL
RIMS1	22999	genome.wustl.edu	37	6	73000508	73000508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014989.4	+1	reviewed	p.C1227W	0.998	80	0%	23	17.4%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73332313	73332313	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019842.3	+1	reviewed	p.F132	1.000	9	0.000	15	0.533	-	-	-	-	-	superfamily_Voltage-gated potassium channels
DDX43	55510	genome.wustl.edu	37	6	74124377	74124377	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018665.2	+1	reviewed	p.Y571	1.000	81	0%	110	38.2%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
MTO1	25821	genome.wustl.edu	37	6	74171595	74171595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123226.1	+1	reviewed	p.G6	0.020	58	0%	81	38.3%	-	-	-	-	-	NULL
FILIP1	27145	genome.wustl.edu	37	6	76023199	76023199	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015687.2	-1	validated	p.S783	0.998	171	0%	67	49.3%	-	-	-	-	-	NULL
FILIP1	27145	genome.wustl.edu	37	6	76024467	76024467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015687.2	-1	validated	p.E361*	1.000	177	0%	122	38.5%	-	-	-	-	-	HMMPfam_CortBP2
SENP6	26054	genome.wustl.edu	37	6	76372947	76372947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015571.2	+1	validated	p.R236I	1.000	76	0%	34	41.2%	-	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	NULL
IRAK1BP1	134728	genome.wustl.edu	37	6	79607819	79607819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010844.1	+1	provisional	p.R184H	0.967	117	0%	45	37.8%	-	-	probably_damaging(0.997)	tolerated(0.38)	deleterious(0.484)	HMMPfam_DUF541
ELOVL4	6785	genome.wustl.edu	37	6	80635951	80635951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022726.3	-1	reviewed	p.N83T	1.000	87	0%	26	15.4%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_ELO
IBTK	25998	genome.wustl.edu	37	6	82906116	82906116	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015525.2	-1	reviewed	p.L1025	0.324	89	0%	43	48.8%	-	-	-	-	-	NULL
UBE3D	90025	genome.wustl.edu	37	6	83754270	83754270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198920.1	-1	provisional	p.E158D	0.024	104	0%	64	39.1%	-	-	possibly_damaging(0.633)	tolerated(0.52)	neutral(0.230)	HMMPfam_DUF2351
DOPEY1	23033	genome.wustl.edu	37	6	83845374	83845374	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015018.2	+1	validated	p.L969	0.748	167	0%	27	25.9%	-	-	-	-	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83845519	83845519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015018.2	+1	validated	p.R1018C	1.000	93	0%	21	28.6%	-	-	benign(0.019)	tolerated(0.08)	neutral(0.301)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83848462	83848462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015018.2	+1	validated	p.F1567L	0.980	103	0%	22	36.4%	-	-	benign(0.01)	tolerated(0.71)	neutral(0.002)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83872603	83872603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015018.2	+1	validated	p.V2353I	1.000	236	0.4%	67	29.9%	-	-	probably_damaging(0.99)	tolerated(0.21)	deleterious(0.485)	NULL
PRSS35	167681	genome.wustl.edu	37	6	84234102	84234102	+	Silent	SNP	C	C	T	rs139406931	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153362.2	+1	validated	p.N314	0.312	74	0%	33	33.3%	-	-	-	-	-	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SNAP91	9892	genome.wustl.edu	37	6	84284739	84284739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014841.2	-1	validated	p.S811I	0.998	55	0%	43	41.9%	-	-	possibly_damaging(0.837)	tolerated(0.14)	deleterious(0.569)	NULL
CYB5R4	51167	genome.wustl.edu	37	6	84665137	84665137	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016230.3	+1	validated	p.L489	0.969	119	0%	28	32.1%	-	-	-	-	-	HMMPfam_NAD_binding_1,superfamily_SSF52343
MRAP2	112609	genome.wustl.edu	37	6	84798828	84798828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138409.2	+1	validated	p.E82D	1.000	63	0%	31	29%	-	-	benign(0.147)	tolerated(0.07)	neutral(0.332)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84859327	84859327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014895.2	-1	validated	p.S1242Y	1.000	266	0%	46	34.8%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87965532	87965532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015021.1	+1	validated	p.R729W	0.649	70	0%	25	32%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF292	23036	genome.wustl.edu	37	6	87969750	87969750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015021.1	+1	validated	p.Y2135H	1.000	97	0%	26	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF292	23036	genome.wustl.edu	37	6	87970428	87970428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015021.1	+1	validated	p.R2361C	1.000	76	0%	21	52.4%	-	-	benign(0.175)	deleterious(0)	neutral(0.461)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87970560	87970560	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015021.1	+1	validated	p.R2405	1.000	94	0%	18	55.6%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C6orf163	206412	genome.wustl.edu	37	6	88066164	88066164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001720635.1	+1	model	p.E40G	0.016	82	0%	29	44.8%	-	-	benign(0.397)	tolerated(0.23)	neutral(0.169)	NULL
C6orf163	206412	genome.wustl.edu	37	6	88075031	88075031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001720635.1	+1	model	p.G177*	1.000	55	0%	22	59.1%	-	-	-	-	-	NULL
RARS2	57038	genome.wustl.edu	37	6	88226547	88226547	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020320.3	-1	reviewed	p.I521	0.999	137	0%	72	25%	-	-	-	-	-	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CNR1	1268	genome.wustl.edu	37	6	88854202	88854202	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016083.4	-1	reviewed	p.C264	1.000	64	0%	48	20.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNR1	1268	genome.wustl.edu	37	6	88854525	88854525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016083.4	-1	reviewed	p.G157S	1.000	30	0%	24	25%	-	-	benign(0.028)	tolerated(0.11)	neutral(0.273)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNR1	1268	genome.wustl.edu	37	6	88854894	88854894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016083.4	-1	reviewed	p.K34E	1.000	134	0%	89	42.7%	-	-	benign(0.026)	tolerated(0.27)	neutral(0.035)	NULL
GABRR1	2569	genome.wustl.edu	37	6	89890198	89890198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002042.3	-1	reviewed	p.T320M	1.000	96	0%	57	26.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRR1	2569	genome.wustl.edu	37	6	89910903	89910903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002042.3	-1	reviewed	p.D85E	0.991	239	0%	134	43.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RRAGD	58528	genome.wustl.edu	37	6	90089992	90089992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021244.4	-1	validated	p.K180T	1.000	140	0%	65	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90382359	90382359	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014611.1	-1	provisional	p.R4513*	0.997	183	0%	100	31%	-	-	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90387403	90387403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014611.1	-1	provisional	p.R4142H	1.000	185	0%	100	45%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
MDN1	23195	genome.wustl.edu	37	6	90425449	90425449	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014611.1	-1	provisional	p.P2261	0.999	107	0%	39	28.2%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90491104	90491104	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000421327	-1	known	p.Q553*	0.001	77	0%	39	43.6%	-	-	-	-	-	NULL
CASP8AP2	9994	genome.wustl.edu	37	6	90581081	90581081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137667.1	+1	reviewed	p.A1956T	0.565	149	0%	88	11.4%	-	-	-	-	-	superfamily_Homeodomain-like
GJA10	84694	genome.wustl.edu	37	6	90605773	90605773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032602.1	+1	validated	p.R529I	0.000	110	0%	83	30.1%	-	-	benign(0.213)	deleterious(0.03)	neutral(0.386)	NULL
GJA10	84694	genome.wustl.edu	37	6	90605791	90605791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032602.1	+1	validated	p.S535L	0.009	94	0%	62	37.1%	-	-	benign(0.202)	tolerated(0.23)	neutral(0.061)	NULL
BACH2	60468	genome.wustl.edu	37	6	90647949	90647949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021813.2	-1	validated	p.R653C	1.000	98	0%	97	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1
MAP3K7	6885	genome.wustl.edu	37	6	91261827	91261827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145331.1	-1	reviewed	p.D270Y	1.000	286	0%	119	33.6%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EPHA7	2045	genome.wustl.edu	37	6	93955126	93955126	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004440.3	-1	reviewed	p.T924	0.995	131	0%	39	33.3%	-	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
MANEA	79694	genome.wustl.edu	37	6	96034537	96034537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024641.2	+1	validated	p.K74N	0.999	144	0%	60	40%	-	-	possibly_damaging(0.796)	tolerated(0.36)	neutral(0.319)	NULL
KLHL32	114792	genome.wustl.edu	37	6	97423913	97423913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052904.3	+1	validated	p.E22K	0.994	69	0%	16	37.5%	-	-	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_POZ domain
FBXL4	26235	genome.wustl.edu	37	6	99323413	99323413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012160.3	-1	reviewed	p.R527K	0.740	74	0%	28	32.1%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	superfamily_SSF52047
COQ3	51805	genome.wustl.edu	37	6	99828173	99828173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017421.3	-1	validated	p.D93G	1.000	70	0%	26	26.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PNISR	25957	genome.wustl.edu	37	6	99856005	99856005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015491.1	-1	validated	p.E272D	0.442	160	0%	57	29.8%	-	-	unknown(0)	tolerated(0.75)	-	NULL
PNISR	25957	genome.wustl.edu	37	6	99857100	99857100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015491.1	-1	validated	p.R208C	1.000	169	0%	46	15.2%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
SIM1	6492	genome.wustl.edu	37	6	100895236	100895236	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005068.2	-1	reviewed	p.G302	0.228	99	0%	126	32.5%	-	-	-	-	-	HMMSmart_PAC,HMMPfam_PAS_3,superfamily_SSF55785
SIM1	6492	genome.wustl.edu	37	6	100897309	100897309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005068.2	-1	reviewed	p.R158H	1.000	31	0%	52	34.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF55785
ASCC3	10973	genome.wustl.edu	37	6	101103625	101103625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006828.2	-1	validated	p.R925W	1.000	131	0%	19	47.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PREP	5550	genome.wustl.edu	37	6	105726055	105726055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002726.3	-1	reviewed	p.F699L	1.000	66	0%	55	43.6%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Peptidase_S9,superfamily_SSF53474
PRDM1	639	genome.wustl.edu	37	6	106553275	106553275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001198.3	+1	reviewed	p.L414F	1.000	32	0%	35	45.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC100287304	100287304	genome.wustl.edu	37	6	106555013	106555013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342660.1	-1	model	p.A130T	1.000	79	0%	83	41%	-	-	-	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	106967945	106967945	+	Silent	SNP	C	C	T	rs147933204	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001624.2	+1	validated	p.L546	0.835	34	0%	25	32%	-	-	-	-	-	NULL
SOBP	55084	genome.wustl.edu	37	6	107955572	107955572	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018013.3	+1	validated	p.N508K	0.998	4	0.000	16	0.625	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCML4	256380	genome.wustl.edu	37	6	108042032	108042032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198081.3	-1	validated	p.P283H	0.001	48	0%	38	31.6%	-	-	benign(0.075)	deleterious(0.03)	neutral(0.369)	NULL
NR2E1	7101	genome.wustl.edu	37	6	108492735	108492735	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003269.3	+1	validated	p.C33	1.000	92	0%	183	38.3%	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MICAL1	64780	genome.wustl.edu	37	6	109770971	109770971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022765.3	-1	validated	p.Q441H	1.000	129	0%	220	38.2%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Calponin-homology domain CH-domain
MICAL1	64780	genome.wustl.edu	37	6	109771545	109771545	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022765.3	-1	validated	p.G383	0.015	15	0%	52	44.2%	-	-	-	-	-	superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain
ZBTB24	9841	genome.wustl.edu	37	6	109787329	109787329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014797.2	-1	validated	p.L607I	1.000	123	0%	87	33.3%	-	-	possibly_damaging(0.633)	deleterious(0.01)	deleterious(0.627)	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109802476	109802476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014797.2	-1	validated	p.R252*	1.000	132	0%	221	39.8%	-	-	-	-	-	NULL
FIG4	9896	genome.wustl.edu	37	6	110083397	110083397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014845.5	+1	reviewed	p.R459W	1.000	204	0%	72	31.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FIG4	9896	genome.wustl.edu	37	6	110112708	110112708	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014845.5	+1	reviewed	p.G770	0.991	35	0%	34	44.1%	-	-	-	-	-	NULL
CDC40	51362	genome.wustl.edu	37	6	110522801	110522801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015891.2	+1	reviewed	p.A106V	1.000	174	0%	75	34.7%	-	-	benign(0.108)	deleterious(0.03)	neutral(0.373)	NULL
DDO	8528	genome.wustl.edu	37	6	110714324	110714324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003649.2	-1	reviewed	p.G255V	1.000	56	0%	49	16.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain
LOC441166	441166	genome.wustl.edu	37	6	111179868	111179868	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_016728.3	+1	model	NULL	1.000	41	0%	26	34.6%	-	-	-	-	-	-
SLC16A10	117247	genome.wustl.edu	37	6	111527814	111527814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018593.4	+1	validated	p.R321I	0.955	172	0%	74	28.4%	-	-	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIAA1919	91749	genome.wustl.edu	37	6	111587305	111587305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153369.2	+1	validated	p.K180N	0.000	191	0%	188	35.6%	-	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
REV3L	5980	genome.wustl.edu	37	6	111695024	111695024	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002912.3	-1	validated	p.R1512*	0.985	218	0%	81	28.4%	-	-	-	-	-	superfamily_Ribonuclease H-like
FRK	2444	genome.wustl.edu	37	6	116264191	116264191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002031.2	-1	reviewed	p.P433H	1.000	104	0%	36	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FRK	2444	genome.wustl.edu	37	6	116325061	116325061	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002031.2	-1	reviewed	p.K149*	1.000	142	0%	28	53.6%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
COL10A1	1300	genome.wustl.edu	37	6	116442210	116442210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000493.3	-1	reviewed	p.L357F	0.000	39	0%	21	23.8%	-	-	unknown(0)	tolerated(0.76)	-	HMMPfam_Collagen
LOC100287430	100287430	genome.wustl.edu	37	6	116579892	116579892	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078343.1	-1	model	NULL	1.000	42	0%	40	42.5%	-	-	benign(0.003)	-	-	-
DSE	29940	genome.wustl.edu	37	6	116720694	116720694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080976.1	+1	reviewed	p.Y94C	1.000	50	0%	29	37.9%	-	-	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	NULL
GPRC6A	222545	genome.wustl.edu	37	6	117121960	117121960	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148963.2	-1	validated	e4-1	1.000	70	0%	20	40%	-	-	-	-	-	-
ROS1	6098	genome.wustl.edu	37	6	117677961	117677961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002944.2	-1	reviewed	p.R1324S	0.000	280	0%	81	37%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117680985	117680985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002944.2	-1	reviewed	p.R1212H	0.000	107	0%	39	48.7%	-	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_SSF63825
PLN	5350	genome.wustl.edu	37	6	118880208	118880208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002667.3	+1	reviewed	p.L42I	1.000	227	0%	79	31.6%	-	-	benign(0.043)	deleterious(0)	neutral(0.447)	HMMPfam_Phospholamban
MAN1A1	4121	genome.wustl.edu	37	6	119501047	119501047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005907.2	-1	reviewed	p.S633	0.096	168	0%	31	38.7%	-	-	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
MAN1A1	4121	genome.wustl.edu	37	6	119509728	119509728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005907.2	-1	reviewed	p.P521T	1.000	171	0%	56	16.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
MAN1A1	4121	genome.wustl.edu	37	6	119522442	119522442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005907.2	-1	reviewed	p.P396L	1.000	392	0%	89	34.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
MAN1A1	4121	genome.wustl.edu	37	6	119623164	119623164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005907.2	-1	reviewed	p.D269Y	1.000	86	0%	39	33.3%	-	-	possibly_damaging(0.84)	deleterious(0.01)	deleterious(0.727)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
GJA1	2697	genome.wustl.edu	37	6	121768447	121768447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000165.3	+1	reviewed	p.L152M	1.000	105	0%	78	44.9%	-	-	probably_damaging(0.995)	tolerated(0.28)	deleterious(0.489)	NULL
TRDN	10345	genome.wustl.edu	37	6	123594123	123594123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006073.2	-1	validated	p.S553Y	0.848	65	0%	16	43.8%	-	-	probably_damaging(0.976)	tolerated(0.05)	deleterious(0.763)	NULL
RNF146	81847	genome.wustl.edu	37	6	127608586	127608586	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030963.2	+1	provisional	p.G275	1.000	176	0%	31	45.2%	-	-	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127768013	127768013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014702.4	-1	validated	p.S484N	0.011	143	0%	31	35.5%	-	-	benign(0)	tolerated(1)	-	NULL
LOC100287918	100287918	genome.wustl.edu	37	6	127981072	127981072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342669.1	+1	model	p.F37	0.901	159	0%	52	34.6%	-	-	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128031162	128031162	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010923.2	-1	reviewed	e6-1	1.000	152	0%	42	31%	-	-	-	-	-	-
THEMIS	387357	genome.wustl.edu	37	6	128150891	128150891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010923.2	-1	reviewed	p.E147*	0.818	141	0%	72	29.2%	-	-	-	-	-	NULL
PTPRK	5796	genome.wustl.edu	37	6	128302385	128302385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135648.1	-1	validated	p.A1202V	1.000	86	0%	32	37.5%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_PTPc,superfamily_SSF52799
PTPRK	5796	genome.wustl.edu	37	6	128403749	128403749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135648.1	-1	validated	p.A537V	1.000	115	0%	21	19%	-	-	benign(0.245)	tolerated(0.12)	neutral(0.286)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PTPRK	5796	genome.wustl.edu	37	6	128718812	128718812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135648.1	-1	validated	p.G41D	1.000	186	0%	71	28.2%	-	-	benign(0.003)	tolerated(0.93)	-	HMMPfam_MAM,HMMSmart_MAM
LAMA2	3908	genome.wustl.edu	37	6	129824253	129824253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000426.3	+1	reviewed	p.E2792V	1.000	156	0%	33	36.4%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_LamG,superfamily_ConA_like_lec_gl
LAMA2	3908	genome.wustl.edu	37	6	129835558	129835558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000426.3	+1	reviewed	p.A3010V	1.000	85	0%	27	48.1%	-	-	probably_damaging(1)	tolerated(0.69)	deleterious(0.502)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
TMEM200A	114801	genome.wustl.edu	37	6	130762228	130762228	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052913.2	+1	provisional	p.R221*	0.876	91	0%	24	54.2%	-	-	-	-	-	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131179383	131179383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001431.3	-1	validated	p.A971S	1.000	107	0%	88	42%	-	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	HMMPfam_4_1_CTD
EPB41L2	2037	genome.wustl.edu	37	6	131277212	131277212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001431.3	-1	validated	p.E138D	0.023	328	0%	186	35.5%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
ARG1	383	genome.wustl.edu	37	6	131904992	131904992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000045.2	+1	reviewed	p.G305R	1.000	123	0%	21	33.3%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_Arginase,superfamily_Arginase/deacetylase
MED23	9439	genome.wustl.edu	37	6	131931323	131931323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004830.2	-1	reviewed	p.R314*	1.000	99	0%	22	27.3%	-	-	-	-	-	NULL
ENPP3	5169	genome.wustl.edu	37	6	131999027	131999027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005021.3	+1	reviewed	p.Y320H	0.961	213	0%	67	37.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP3	5169	genome.wustl.edu	37	6	132006533	132006533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005021.3	+1	reviewed	p.E384K	1.000	134	0%	50	30%	-	-	possibly_damaging(0.947)	tolerated(0.07)	deleterious(0.710)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
CTAGE9	643854	genome.wustl.edu	37	6	132031544	132031544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145659.1	-1	provisional	p.R205Q	0.000	819	0%	778	11.6%	-	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
ENPP1	5167	genome.wustl.edu	37	6	132207750	132207750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006208.2	+1	reviewed	p.F831L	1.000	81	0%	41	31.7%	-	-	probably_damaging(0.981)	tolerated(0.08)	deleterious(0.726)	HMMSmart_NUC,superfamily_SSF54060
TAAR2	9287	genome.wustl.edu	37	6	132938300	132938300	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033080.1	-1	validated	p.E349*	0.977	44	0%	14	28.6%	-	-	-	-	-	NULL
SLC18B1	116843	genome.wustl.edu	37	6	133111344	133111344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052831.2	-1	validated	p.L84S	0.956	95	0%	80	12.5%	-	-	benign(0.214)	deleterious(0)	neutral(0.466)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RPS12	6206	genome.wustl.edu	37	6	133136223	133136223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001016.3	+1	reviewed	p.D43N	1.000	196	0%	180	41.1%	-	-	benign(0.405)	deleterious(0)	deleterious(0.575)	HMMPfam_Ribosomal_L7Ae,superfamily_L30e-like
EYA4	2070	genome.wustl.edu	37	6	133836492	133836492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004100.4	+1	reviewed	p.L512P	1.000	125	0%	52	17.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase
SGK1	6446	genome.wustl.edu	37	6	134638552	134638552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143676.1	-1	reviewed	p.A16V	1.000	167	0%	151	31.1%	-	-	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
ALDH8A1	64577	genome.wustl.edu	37	6	135260487	135260487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022568.2	-1	reviewed	p.A170V	1.000	105	0%	92	30.4%	-	-	possibly_damaging(0.498)	tolerated(0.09)	neutral(0.463)	HMMPfam_Aldedh,superfamily_ALDH-like
AHI1	54806	genome.wustl.edu	37	6	135621673	135621673	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134830.1	-1	reviewed	p.S1150	0.981	270	0%	105	41%	-	-	-	-	-	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136599392	136599392	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014739.2	-1	reviewed	p.S209	0.985	482	0.2%	129	14%	-	-	-	-	-	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136599421	136599421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014739.2	-1	reviewed	p.D200N	1.000	491	0.2%	135	24.4%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MAP7	9053	genome.wustl.edu	37	6	136683652	136683652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003980.3	-1	reviewed	p.R488W	1.000	257	0%	324	38%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_MAP7
MAP7	9053	genome.wustl.edu	37	6	136687118	136687118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003980.3	-1	reviewed	p.P343L	1.000	94	0%	104	34.6%	-	-	unknown(0)	tolerated(0.19)	-	NULL
MAP7	9053	genome.wustl.edu	37	6	136710518	136710518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003980.3	-1	reviewed	p.R128W	1.000	93	0%	61	41%	-	-	unknown(0)	deleterious(0)	-	NULL
SLC35D3	340146	genome.wustl.edu	37	6	137245614	137245614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008783.1	+1	provisional	p.G344V	0.006	73	0%	150	30.7%	-	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
OLIG3	167826	genome.wustl.edu	37	6	137814969	137814969	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175747.2	-1	provisional	p.A113	0.922	47	0%	91	39.6%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
TNFAIP3	7128	genome.wustl.edu	37	6	138199662	138199662	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006290.2	+1	reviewed	p.S360	0.005	58	0%	54	72.2%	-	-	-	-	-	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138656226	138656226	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020340.4	+1	validated	p.S2081	0.994	33	0%	26	30.8%	-	-	-	-	-	NULL
NHSL1	57224	genome.wustl.edu	37	6	138817391	138817391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144060.1	-1	validated	p.R59H	1.000	110	0%	37	48.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TXLNB	167838	genome.wustl.edu	37	6	139564433	139564433	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153235.3	-1	validated	p.E429*	1.000	100	0%	83	37.3%	-	-	-	-	-	HMMPfam_Taxilin
GPR126	57211	genome.wustl.edu	37	6	142764480	142764480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198569.2	+1	reviewed	p.A1194V	0.825	96	0%	27	44.4%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143093202	143093202	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006734.3	-1	provisional	p.R892*	0.889	149	0%	156	32.1%	-	-	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143095522	143095522	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006734.3	-1	provisional	p.S118	1.000	101	0%	63	36.5%	-	-	-	-	-	NULL
LTV1	84946	genome.wustl.edu	37	6	144184235	144184235	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032860.3	+1	provisional	p.R377*	0.986	145	0%	44	29.5%	-	-	-	-	-	HMMPfam_LTV
UTRN	7402	genome.wustl.edu	37	6	144769867	144769867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007124.2	+1	reviewed	p.K678N	1.000	79	0%	28	32.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
UTRN	7402	genome.wustl.edu	37	6	144794936	144794936	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007124.2	+1	reviewed	p.D1049	0.000	140	0%	137	32.8%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144794948	144794948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007124.2	+1	reviewed	p.Q1053H	1.000	136	0%	129	45.7%	-	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144843241	144843241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007124.2	+1	reviewed	p.S1889	0.522	95	0%	27	40.7%	-	-	-	-	-	NULL
UTRN	7402	genome.wustl.edu	37	6	144875968	144875968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007124.2	+1	reviewed	p.R2358Q	0.185	84	0%	23	34.8%	-	-	possibly_damaging(0.844)	tolerated(0.25)	neutral(0.360)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
FBXO30	84085	genome.wustl.edu	37	6	146127493	146127493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032145.4	-1	reviewed	p.R17W	1.000	96	0%	55	41.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GRM1	2911	genome.wustl.edu	37	6	146755778	146755778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000838.3	+1	reviewed	p.A1144V	1.000	11	0%	22	54.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_GluR_Homer-bdg
SASH1	23328	genome.wustl.edu	37	6	148865586	148865586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015278.3	+1	validated	p.E994*	1.000	25	0%	49	36.7%	-	-	-	-	-	NULL
SASH1	23328	genome.wustl.edu	37	6	148865728	148865728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015278.3	+1	validated	p.P1041L	0.000	12	0%	25	24%	-	-	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
TAB2	23118	genome.wustl.edu	37	6	149700469	149700469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015093.4	+1	reviewed	p.P473L	1.000	93	0%	47	31.9%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149826775	149826775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139126.2	-1	reviewed	p.K431N	1.000	312	0%	132	35.6%	-	-	unknown(0)	-	-	superfamily_RNA-binding domain RBD
PCMT1	5110	genome.wustl.edu	37	6	150114748	150114748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005389.2	+1	validated	p.N121H	1.000	95	0%	85	30.6%	-	-	benign(0.013)	tolerated(0.06)	neutral(0.323)	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RAET1G	353091	genome.wustl.edu	37	6	150240218	150240218	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001788.2	-1	provisional	p.L198	0.000	389	0%	473	33.6%	-	-	-	-	-	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
PLEKHG1	57480	genome.wustl.edu	37	6	151151892	151151892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029884.1	+1	provisional	p.P549S	0.045	95	0%	87	41.4%	-	-	benign(0.029)	tolerated(0.13)	neutral(0.254)	NULL
C6orf211	79624	genome.wustl.edu	37	6	151789603	151789603	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024573.1	+1	predicted	p.H228	0.169	103	0%	57	15.8%	-	-	-	-	-	HMMPfam_DUF89,superfamily_DUF89
SYNE1	23345	genome.wustl.edu	37	6	152501301	152501301	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182961.2	-1	reviewed	p.L7810	1.000	276	0%	114	46.5%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152529286	152529286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182961.2	-1	reviewed	p.R7549C	1.000	126	0%	29	24.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152671413	152671413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182961.2	-1	reviewed	p.L3931I	1.000	102	0%	47	25.5%	-	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152751261	152751261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182961.2	-1	reviewed	p.L1592I	1.000	82	0%	24	37.5%	-	-	probably_damaging(0.991)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152765627	152765627	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000367248	-1	known	p.*811Q	0.990	152	0%	129	38%	-	-	-	-	-	NULL
FBXO5	26271	genome.wustl.edu	37	6	153296595	153296595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012177.3	-1	reviewed	p.D89Y	1.000	225	0%	185	35.1%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
OPRM1	4988	genome.wustl.edu	37	6	154360918	154360918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145279.1	+1	reviewed	p.V173A	1.000	81	0%	97	29.9%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_SSF81321
OPRM1	4988	genome.wustl.edu	37	6	154412576	154412576	+	Missense_Mutation	SNP	C	C	T	rs184553578	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145279.1	+1	reviewed	p.T471M	0.998	17	0%	12	41.7%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_SSF81321
OPRM1	4988	genome.wustl.edu	37	6	154567885	154567885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008503.1	+1	reviewed	p.R408H	0.004	173	0%	38	26.3%	-	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155109099	155109099	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014892.3	+1	validated	p.F88	1.000	241	0%	100	31%	-	-	-	-	-	HMMSmart_RPR,HMMPfam_DUF618,superfamily_ENTH_VHS
SCAF8	22828	genome.wustl.edu	37	6	155143449	155143449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014892.3	+1	validated	p.T611M	0.469	116	0%	40	37.5%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155458330	155458330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012454.3	+1	reviewed	p.G405D	0.996	65	0%	56	41.1%	-	-	possibly_damaging(0.703)	deleterious(0.02)	deleterious(0.635)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155486446	155486446	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012454.3	+1	reviewed	p.T755S	1.000	114	0%	68	41.2%	-	-	benign(0.002)	tolerated(1)	-	NULL
TIAM2	26230	genome.wustl.edu	37	6	155565811	155565811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012454.3	+1	reviewed	p.S1146N	1.000	229	0%	210	29%	-	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NOX3	50508	genome.wustl.edu	37	6	155750057	155750057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015718.2	-1	reviewed	p.T339I	1.000	32	0%	22	40.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl
ARID1B	57492	genome.wustl.edu	37	6	157527495	157527495	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017519.2	+1	validated	p.D1722	0.000	119	1.7%	70	41.4%	-	-	-	-	-	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158487658	158487658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003898.3	+1	reviewed	p.D570N	0.115	21	0%	36	44.4%	-	-	benign(0.103)	tolerated(0.11)	neutral(0.280)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SERAC1	84947	genome.wustl.edu	37	6	158535892	158535892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032861.3	-1	validated	p.R538H	0.974	146	0%	54	38.9%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	superfamily_alpha/beta-Hydrolases
TULP4	56995	genome.wustl.edu	37	6	158850873	158850873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020245.3	+1	validated	p.E163K	1.000	228	0%	116	37.9%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like
TMEM181	57583	genome.wustl.edu	37	6	159006376	159006376	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020823.1	+1	validated	p.V237	0.001	61	0%	61	34.4%	-	-	-	-	-	NULL
TMEM181	57583	genome.wustl.edu	37	6	159029399	159029399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020823.1	+1	validated	p.S373R	1.000	193	0%	220	12.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SYTL3	94120	genome.wustl.edu	37	6	159178312	159178312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009991.2	+1	validated	p.A335T	0.983	25	0%	54	74.1%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RSPH3	83861	genome.wustl.edu	37	6	159401884	159401884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031924.4	-1	validated	p.R403C	1.000	212	0%	94	42.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Radial_spoke_3
FNDC1	84624	genome.wustl.edu	37	6	159644653	159644653	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032532.2	+1	validated	p.K287T	0.992	354	0%	284	36.6%	-	-	unknown(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FNDC1	84624	genome.wustl.edu	37	6	159653074	159653074	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000329629	+1	known	p.E406*	1.000	24	0%	41	39%	-	-	unknown(0)	deleterious(0)	-	NULL
WTAP	9589	genome.wustl.edu	37	6	160169256	160169256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004906.3	+1	reviewed	p.P103S	1.000	139	0%	54	29.6%	-	-	benign(0.414)	tolerated(0.06)	neutral(0.457)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160468922	160468922	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000876.2	+1	reviewed	p.E776	1.000	48	0%	31	48.4%	-	-	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160543236	160543236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003057.2	+1	reviewed	p.R90H	0.132	30	0%	45	51.1%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SLC22A2	6582	genome.wustl.edu	37	6	160662519	160662519	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003058.2	-1	reviewed	p.P496	1.000	53	0%	15	40%	-	-	-	-	-	superfamily_MFS general substrate transporter
SLC22A2	6582	genome.wustl.edu	37	6	160664675	160664675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003058.2	-1	reviewed	p.R403H	0.995	82	0%	21	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_SUGAR_TRANSPORT_1,superfamily_MFS general substrate transporter
SLC22A2	6582	genome.wustl.edu	37	6	160679514	160679514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003058.2	-1	reviewed	p.Y92	0.982	34	0%	38	44.7%	-	-	-	-	-	NULL
SLC22A2	6582	genome.wustl.edu	37	6	160679775	160679775	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003058.2	-1	reviewed	p.V5	1.000	6	0.000	12	0.500	-	-	-	-	-	NULL
LPA	4018	genome.wustl.edu	37	6	160968864	160968864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005577.2	-1	reviewed	p.T1754M	0.529	188	0%	111	32.4%	-	-	possibly_damaging(0.735)	tolerated(0.17)	neutral(0.328)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
MAP3K4	4216	genome.wustl.edu	37	6	161470059	161470059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005922.2	+1	reviewed	p.T252M	0.001	68	0%	17	47.1%	-	-	possibly_damaging(0.844)	tolerated(0.09)	deleterious(0.620)	NULL
AGPAT4	56895	genome.wustl.edu	37	6	161560485	161560485	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020133.2	-1	reviewed	p.T337	1.000	29	0%	73	39.7%	-	-	-	-	-	NULL
LOC100129958	100129958	genome.wustl.edu	37	6	162989702	162989702	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001719102.1	+1	model	p.E63	1.000	20	0%	14	42.9%	-	-	-	-	-	HMMPfam_Filament
C6orf118	168090	genome.wustl.edu	37	6	165715646	165715646	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144980.3	-1	validated	p.D55	0.381	104	0%	114	36.8%	-	-	-	-	-	NULL
C6orf118	168090	genome.wustl.edu	37	6	165715724	165715724	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144980.3	-1	validated	p.H29	0.011	53	0%	64	35.9%	-	-	-	-	-	NULL
CCR6	1235	genome.wustl.edu	37	6	167549746	167549746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004367.5	+1	reviewed	p.D10N	0.000	281	0%	320	35.9%	-	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_SSF81321
CCR6	1235	genome.wustl.edu	37	6	167549850	167549850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004367.5	+1	reviewed	p.F44L	0.953	316	0%	312	31.4%	-	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	superfamily_SSF81321
CCR6	1235	genome.wustl.edu	37	6	167550575	167550575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004367.5	+1	reviewed	p.R286Q	0.000	239	0%	214	32.7%	-	-	benign(0.242)	tolerated(0.42)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
GPR31	2853	genome.wustl.edu	37	6	167570727	167570727	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005299.2	-1	validated	p.A198G	0.000	38	0%	39	20.5%	-	-	benign(0.044)	tolerated(0.5)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
TTLL2	83887	genome.wustl.edu	37	6	167754339	167754339	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031949.4	+1	validated	p.G317	0.001	157	0%	150	38.7%	-	-	-	-	-	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
TCP10	6953	genome.wustl.edu	37	6	167786722	167786722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004610.3	-1	validated	p.G306S	0.000	220	0%	280	34.6%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168312007	168312007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040001.1	+1	validated	p.S624R	1.000	175	0%	69	42%	-	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168352651	168352651	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000507704	+1	known	p.S23L	0.222	43	0%	45	28.9%	-	-	-	-	-	NULL
KIF25	3834	genome.wustl.edu	37	6	168445511	168445511	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030615.2	+1	reviewed	p.G330	0.893	158	0%	279	37.6%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
FRMD1	79981	genome.wustl.edu	37	6	168457899	168457899	+	Missense_Mutation	SNP	C	C	T	rs113328475		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024919.3	-1	validated	p.A510T	0.003	24	0%	68	38.2%	-	-	possibly_damaging(0.67)	deleterious(0.02)	deleterious(0.621)	NULL
DACT2	168002	genome.wustl.edu	37	6	168708916	168708916	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_214462.3	-1	validated	p.V507	0.000	42	0%	81	42%	-	-	-	-	-	NULL
THBS2	7058	genome.wustl.edu	37	6	169632779	169632779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003247.2	-1	reviewed	p.A638S	0.999	29	0%	62	29%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMSmart_EGF
THBS2	7058	genome.wustl.edu	37	6	169634857	169634857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003247.2	-1	reviewed	p.Q541H	1.000	30	0%	73	35.6%	-	-	possibly_damaging(0.791)	deleterious(0.04)	deleterious(0.645)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
C6orf70	55780	genome.wustl.edu	37	6	170159137	170159137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018341.1	+1	validated	p.A194V	0.932	185	0%	172	14.5%	-	-	benign(0.212)	tolerated(0.79)	neutral(0.022)	NULL
C6orf70	55780	genome.wustl.edu	37	6	170160022	170160022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018341.1	+1	validated	p.R232C	0.948	357	0%	269	40.9%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
DLL1	28514	genome.wustl.edu	37	6	170597824	170597824	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005618.3	-1	reviewed	p.L135	0.001	566	0.2%	968	32.6%	-	-	-	-	-	NULL
FAM120B	84498	genome.wustl.edu	37	6	170627482	170627482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032448.1	+1	provisional	p.A335V	0.129	100	0%	61	34.4%	-	-	benign(0.294)	tolerated(0.1)	neutral(0.377)	NULL
PSMB1	5689	genome.wustl.edu	37	6	170844377	170844377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002793.3	-1	reviewed	p.D219	0.059	159	0%	51	23.5%	-	-	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
PRKAR1B	5575	genome.wustl.edu	37	7	618896	618896	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000400758	-1	known	p.R157Q	0.004	52	0%	97	36.1%	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,PatternScan_CNMP_BINDING_1,superfamily_cAMP-binding domain-like
PRKAR1B	5575	genome.wustl.edu	37	7	635796	635796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002735.2	-1	validated	p.R232Q	1.000	29	0%	61	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HEATR2	54919	genome.wustl.edu	37	7	801458	801458	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440747	+1	known	p.R315C	0.000	61	0%	124	38.7%	-	-	-	-	-	superfamily_ARM repeat
SUN1	23353	genome.wustl.edu	37	7	905627	905627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130965.2	+1	reviewed	p.E635K	1.000	117	0%	218	12.8%	-	-	benign(0.147)	tolerated(0.27)	neutral(0.046)	NULL
MICALL2	79778	genome.wustl.edu	37	7	1478529	1478529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182924.3	-1	validated	p.R690Q	0.000	37	0%	87	35.6%	-	-	probably_damaging(0.971)	tolerated(0.34)	neutral(0.436)	NULL
INTS1	26173	genome.wustl.edu	37	7	1517490	1517490	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080453.2	-1	validated	p.A1571	0.000	19	0%	57	36.8%	-	-	-	-	-	NULL
INTS1	26173	genome.wustl.edu	37	7	1542704	1542704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080453.2	-1	validated	p.A61V	0.995	73	0%	208	33.7%	-	-	possibly_damaging(0.575)	deleterious(0.02)	deleterious(0.580)	NULL
MAFK	7975	genome.wustl.edu	37	7	1579710	1579710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002360.3	+1	validated	p.R57H	1.000	17	0%	39	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_bZIP_Maf,HMMSmart_SM00338,superfamily_A DNA-binding domain in eukaryotic transcription factors
ELFN1	392617	genome.wustl.edu	37	7	1785460	1785460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128636.2	+1	validated	p.P410S	0.975	28	0%	51	29.4%	-	-	-	-	-	NULL
EIF3B	8662	genome.wustl.edu	37	7	2402723	2402723	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037283.1	+1	validated	p.D277	0.979	116	0.9%	109	39.4%	-	-	-	-	-	NULL
EIF3B	8662	genome.wustl.edu	37	7	2406634	2406634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037283.1	+1	validated	p.S453P	1.000	329	0%	340	39.7%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
ENSG00000231761	0	genome.wustl.edu	37	7	2434451	2434451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000423305	-1	known	p.G45D	0.054	26	0%	62	45.2%	-	-	-	-	-	NULL
IQCE	23288	genome.wustl.edu	37	7	2617909	2617909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152558.3	+1	validated	p.M167V	0.826	39	0%	82	35.4%	-	-	possibly_damaging(0.448)	tolerated(0.11)	neutral(0.418)	NULL
IQCE	23288	genome.wustl.edu	37	7	2622273	2622273	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152558.3	+1	validated	p.D230	0.720	22	0%	65	41.5%	-	-	-	-	-	NULL
TTYH3	80727	genome.wustl.edu	37	7	2696037	2696037	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025250.2	+1	reviewed	p.Y373	1.000	50	0%	116	33.6%	-	-	-	-	-	HMMPfam_Tweety
AMZ1	155185	genome.wustl.edu	37	7	2748733	2748733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133463.1	+1	provisional	p.R209Q	1.000	30	0%	35	20%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SDK1	221935	genome.wustl.edu	37	7	4247782	4247782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152744.3	+1	validated	p.L1756I	0.995	66	0%	117	41%	-	-	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FOXK1	221937	genome.wustl.edu	37	7	4798686	4798686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037165.1	+1	validated	p.A417T	1.000	10	0%	37	43.2%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
FOXK1	221937	genome.wustl.edu	37	7	4799075	4799075	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037165.1	+1	validated	p.V515	0.078	8	0.000	27	0.519	-	-	-	-	-	NULL
FOXK1	221937	genome.wustl.edu	37	7	4800694	4800694	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037165.1	+1	validated	e8-1	0.900	22	0%	39	51.3%	-	-	-	-	-	-
KIAA0415	9907	genome.wustl.edu	37	7	4829516	4829516	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014855.1	+1	validated	p.S587	0.996	7	0.000	13	0.462	-	-	-	-	-	NULL
RADIL	55698	genome.wustl.edu	37	7	4843461	4843461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000423090	-1	known	p.H47Y	0.000	18	0%	28	28.6%	-	-	-	-	-	NULL
PAPOLB	56903	genome.wustl.edu	37	7	4900243	4900243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020144.4	-1	validated	p.R400Q	1.000	441	0%	625	36.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_RNA-bind,superfamily_PAP_C
PAPOLB	56903	genome.wustl.edu	37	7	4900782	4900782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020144.4	-1	validated	p.N220K	1.000	129	0%	228	35.5%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_PAP_central,superfamily_SSF81301,superfamily_SSF81631
PAPOLB	56903	genome.wustl.edu	37	7	4901383	4901383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020144.4	-1	validated	p.R20H	0.130	12	0%	33	39.4%	-	-	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_PAP_central
SLC29A4	222962	genome.wustl.edu	37	7	5327481	5327481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040661.1	+1	reviewed	p.P12S	0.551	21	0%	55	30.9%	-	-	benign(0.014)	tolerated(0.11)	neutral(0.272)	NULL
FBXL18	80028	genome.wustl.edu	37	7	5531017	5531017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000297035	-1	known	p.A174T	0.118	14	0%	34	52.9%	-	-	unknown(0)	-	-	NULL
CCZ1	51622	genome.wustl.edu	37	7	5944829	5944829	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015622.5	+1	validated	p.F209	1.000	281	0%	298	21.1%	-	-	-	-	-	HMMPfam_DUF2049
PMS2	5395	genome.wustl.edu	37	7	6017238	6017238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000535.5	-1	reviewed	p.S809Y	1.000	70	1.4%	94	36.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MutL_C
PMS2	5395	genome.wustl.edu	37	7	6026664	6026664	+	Missense_Mutation	SNP	G	G	A	rs63750534		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000535.5	-1	reviewed	p.R578C	0.342	59	1.7%	61	31.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PMS2	5395	genome.wustl.edu	37	7	6037047	6037047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000535.5	-1	reviewed	p.S238I	1.000	57	0%	46	43.5%	-	-	possibly_damaging(0.81)	deleterious(0.02)	deleterious(0.688)	HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like
AIMP2	7965	genome.wustl.edu	37	7	6054925	6054925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006303.3	+1	validated	p.A95V	0.675	111	0%	125	33.6%	-	-	benign(0.221)	tolerated(0.18)	neutral(0.078)	NULL
USP42	84132	genome.wustl.edu	37	7	6194612	6194612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032172.2	+1	validated	p.D1143Y	0.001	29	0%	54	31.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
USP42	84132	genome.wustl.edu	37	7	6196639	6196639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032172.2	+1	validated	p.R1299Q	0.199	75	0%	124	26.6%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
CYTH3	9265	genome.wustl.edu	37	7	6210864	6210864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004227.3	-1	reviewed	p.C177*	1.000	43	0%	93	36.6%	-	-	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
CYTH3	9265	genome.wustl.edu	37	7	6213288	6213288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004227.3	-1	reviewed	p.L149I	0.985	104	0%	162	24.7%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
DAGLB	221955	genome.wustl.edu	37	7	6449537	6449537	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139179.3	-1	validated	p.S650	0.005	20	0%	46	28.3%	-	-	-	-	-	NULL
GRID2IP	392862	genome.wustl.edu	37	7	6541439	6541439	+	Silent	SNP	G	G	A	rs144875801	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145118.1	-1	validated	p.S1124	0.072	22	0%	70	15.7%	-	-	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
GRID2IP	392862	genome.wustl.edu	37	7	6544452	6544452	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145118.1	-1	validated	p.I894	1.000	27	0%	66	48.5%	-	-	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
C7orf26	79034	genome.wustl.edu	37	7	6647624	6647624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024067.2	+1	predicted	p.Q394H	0.996	5	0.000	14	0.357	-	-	possibly_damaging(0.928)	deleterious(0.05)	deleterious(0.721)	NULL
ENSG00000198580	0	genome.wustl.edu	37	7	6714610	6714610	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000328239	+1	known	p.A4	0.000	21	0%	20	65%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000198580	0	genome.wustl.edu	37	7	6715444	6715444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000401847	+1	known	p.R236I	1.000	31	0%	29	34.5%	-	-	possibly_damaging(0.944)	tolerated(0.07)	deleterious(0.708)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF12	7559	genome.wustl.edu	37	7	6731513	6731513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016265.3	-1	reviewed	p.E354*	0.839	149	0%	51	35.3%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCZ1B	221960	genome.wustl.edu	37	7	6851603	6851603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198097.2	-1	predicted	p.L312F	1.000	279	0%	187	41.7%	-	-	possibly_damaging(0.553)	tolerated(0.6)	neutral(0.193)	HMMPfam_DUF2049
CCZ1B	221960	genome.wustl.edu	37	7	6854421	6854421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198097.2	-1	predicted	p.L252I	0.998	246	0%	190	43.2%	-	-	probably_damaging(0.972)	tolerated(0.09)	deleterious(0.710)	HMMPfam_DUF2049
COL28A1	340267	genome.wustl.edu	37	7	7529079	7529079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037763.2	-1	validated	p.G369C	1.000	89	0%	39	43.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIOS	54468	genome.wustl.edu	37	7	7629050	7629050	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019005.3	+1	validated	p.I633	0.957	139	0%	50	50%	-	-	-	-	-	NULL
LOC340268	340268	genome.wustl.edu	37	7	9766154	9766154	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_041608.1	+1	model	NULL	0.997	36	0%	55	32.7%	-	-	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9766620	9766620	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_041608.1	+1	model	NULL	0.288	79	0%	138	32.6%	-	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11022400	11022400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000303905	+1	known	p.A172T	0.000	158	0%	77	37.7%	-	-	unknown(0)	tolerated(0.76)	-	NULL
PHF14	9678	genome.wustl.edu	37	7	11022706	11022706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000303905	+1	known	p.K274E	1.000	118	0%	41	39%	-	-	possibly_damaging(0.945)	deleterious(0.05)	deleterious(0.735)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11418731	11418731	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015204.2	-1	validated	p.R1589	1.000	152	0%	40	27.5%	-	-	-	-	-	NULL
THSD7A	221981	genome.wustl.edu	37	7	11501652	11501652	+	Silent	SNP	C	C	T	rs7807697	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015204.2	-1	validated	p.A829	0.258	110	0%	16	37.5%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209
THSD7A	221981	genome.wustl.edu	37	7	11676110	11676110	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015204.2	-1	validated	p.A223	0.031	71	1.4%	67	32.8%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TMEM106B	54664	genome.wustl.edu	37	7	12269335	12269335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134232.1	+1	validated	p.Y158D	1.000	68	0%	22	27.3%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_DUF1356
VWDE	221806	genome.wustl.edu	37	7	12412601	12412601	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135924.1	-1	provisional	e10+2	1.000	122	0%	50	36%	-	-	-	-	-	-
VWDE	221806	genome.wustl.edu	37	7	12419132	12419132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135924.1	-1	provisional	p.E284K	0.998	103	0%	46	34.8%	-	-	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
AGR2	10551	genome.wustl.edu	37	7	16839434	16839434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006408.3	-1	validated	p.K88N	1.000	252	0%	153	29.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Thioredoxin-like
AHR	196	genome.wustl.edu	37	7	17375410	17375410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001621.4	+1	validated	p.T387I	1.000	74	0%	59	45.8%	-	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMSmart_SM00086,superfamily_PYP-like sensor domain (PAS domain)
TWISTNB	221830	genome.wustl.edu	37	7	19738018	19738018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002926.1	-1	validated	p.R313K	0.924	185	0%	122	36.9%	-	-	benign(0.017)	tolerated(0.08)	neutral(0.300)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20698711	20698711	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000443026	+1	known	p.*132L	0.001	217	0%	153	37.3%	-	-	-	-	-	NULL
ABCB5	340273	genome.wustl.edu	37	7	20738141	20738141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178559.5	+1	validated	p.V263L	0.009	182	0%	62	33.9%	-	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SP8	221833	genome.wustl.edu	37	7	20824396	20824396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182700.4	-1	validated	p.R347H	1.000	4	0.000	10	0.400	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SP4	6671	genome.wustl.edu	37	7	21469154	21469154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003112.3	+1	validated	p.S124L	0.997	92	0%	112	33.9%	-	-	unknown(0)	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21639471	21639471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003777.3	+1	reviewed	p.D912Y	1.000	167	0%	56	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21654855	21654855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003777.3	+1	reviewed	p.L1326F	1.000	268	0%	82	42.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21789345	21789345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003777.3	+1	reviewed	p.T2915N	0.984	152	0%	38	28.9%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21892171	21892171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003777.3	+1	reviewed	p.E3668D	0.996	138	0%	78	14.1%	-	-	probably_damaging(0.956)	tolerated(0.16)	neutral(0.459)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21920389	21920389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003777.3	+1	reviewed	p.A4096T	1.000	128	0%	66	24.2%	-	-	benign(0.164)	deleterious(0)	neutral(0.460)	HMMPfam_Dynein_heavy
KLHL7	55975	genome.wustl.edu	37	7	23213674	23213674	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031710.2	+1	reviewed	p.N506	0.992	304	0%	187	35.3%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
GPNMB	10457	genome.wustl.edu	37	7	23286409	23286409	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000435486	+1	known	p.C25*	0.000	88	0%	144	37.5%	-	-	-	-	-	NULL
MALSU1	115416	genome.wustl.edu	37	7	23340465	23340465	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138446.1	+1	predicted	p.T88	0.000	148	0%	141	40.4%	-	-	-	-	-	NULL
STK31	56164	genome.wustl.edu	37	7	23768848	23768848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031414.3	+1	reviewed	p.E155*	1.000	122	0%	69	27.5%	-	-	-	-	-	NULL
MPP6	51678	genome.wustl.edu	37	7	24703278	24703278	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016447.2	+1	provisional	p.L241V	0.369	235	0%	81	34.6%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
C7orf31	136895	genome.wustl.edu	37	7	25175680	25175680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138811.3	-1	validated	p.L562I	0.000	130	0%	70	34.3%	-	-	benign(0.189)	tolerated(0.12)	neutral(0.278)	NULL
C7orf31	136895	genome.wustl.edu	37	7	25175905	25175905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138811.3	-1	validated	p.P487S	0.059	170	0%	90	36.7%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224678	26224678	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004289.6	+1	reviewed	p.E454*	0.521	222	0%	120	30%	-	-	-	-	-	NULL
HNRNPA2B1	3181	genome.wustl.edu	37	7	26235512	26235512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031243.2	-1	reviewed	p.R238C	1.000	177	0%	186	32.8%	-	-	unknown(0)	tolerated(0.06)	-	NULL
CBX3	11335	genome.wustl.edu	37	7	26246091	26246091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007276.3	+1	reviewed	p.G43E	1.000	252	0%	259	29%	-	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
SNX10	29887	genome.wustl.edu	37	7	26404214	26404214	+	Silent	SNP	C	C	T	rs192013192	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013322.2	+1	reviewed	p.F57	1.000	193	0%	56	30.4%	-	-	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
HOXA2	3199	genome.wustl.edu	37	7	27141923	27141923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006735.3	-1	reviewed	p.R66H	1.000	32	0%	71	31%	-	-	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	NULL
HOXA7	3204	genome.wustl.edu	37	7	27195886	27195886	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006896.3	-1	reviewed	p.C93	1.000	9	0.000	35	0.314	-	-	-	-	-	NULL
ENSG00000248357	0	genome.wustl.edu	37	7	27497900	27497900	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000506075	+1	novel	NULL	1.000	70	0%	99	36.4%	-	-	-	-	-	-
TAX1BP1	8887	genome.wustl.edu	37	7	27832691	27832691	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006024.5	+1	validated	p.T424P	0.889	53	0%	39	17.9%	-	-	benign(0.119)	tolerated(0.26)	neutral(0.044)	HMMPfam_CALCOCO1
ZNRF2	223082	genome.wustl.edu	37	7	30363282	30363282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_147128.3	+1	validated	p.K165T	1.000	165	0%	29	37.9%	-	-	possibly_damaging(0.703)	deleterious(0.05)	deleterious(0.598)	NULL
GGCT	79017	genome.wustl.edu	37	7	30540277	30540277	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000426081	-1	known	p.A7V	1.000	160	0%	129	45%	-	-	-	-	-	NULL
ADCYAP1R1	117	genome.wustl.edu	37	7	31124973	31124973	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001118.3	+1	reviewed	p.S195	0.241	83	0%	73	37%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
NEUROD6	63974	genome.wustl.edu	37	7	31378167	31378167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022728.2	-1	provisional	p.A239V	0.992	87	0%	121	42.1%	-	-	benign(0.021)	tolerated(0.18)	neutral(0.057)	NULL
AVL9	23080	genome.wustl.edu	37	7	32582824	32582824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015060.1	+1	provisional	p.K55N	0.998	139	0%	75	28%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Avl9
FKBP9	11328	genome.wustl.edu	37	7	33016064	33016064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007270.3	+1	validated	p.R219H	1.000	408	3.9%	149	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP_C,superfamily_SSF54534
BBS9	27241	genome.wustl.edu	37	7	33407445	33407445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198428.2	+1	reviewed	p.R587Q	0.816	362	0%	165	46.7%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
BMPER	168667	genome.wustl.edu	37	7	34094775	34094775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133468.3	+1	validated	p.D263Y	1.000	95	0%	42	28.6%	-	-	possibly_damaging(0.637)	deleterious(0.01)	deleterious(0.629)	HMMPfam_VWC,HMMSmart_VWC
BMPER	168667	genome.wustl.edu	37	7	34118742	34118742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133468.3	+1	validated	p.A451V	0.871	11	0%	17	29.4%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_VWD,HMMSmart_VWD
TBX20	57057	genome.wustl.edu	37	7	35288340	35288340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077653.2	-1	reviewed	p.H165R	1.000	41	0%	31	12.9%	-	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
HERPUD2	64224	genome.wustl.edu	37	7	35734238	35734238	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022373.4	-1	validated	e1-1	0.004	10	0%	13	30.8%	-	-	-	-	-	-
SEPT7	989	genome.wustl.edu	37	7	35922132	35922132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001788.4	+1	reviewed	p.Y223	1.000	70	0%	36	25%	-	-	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANLN	54443	genome.wustl.edu	37	7	36466638	36466638	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018685.2	+1	validated	e20+1	1.000	86	0%	27	33.3%	-	-	-	-	-	-
EPDR1	54749	genome.wustl.edu	37	7	37960254	37960254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017549.3	+1	reviewed	p.S25R	0.380	29	0%	56	30.4%	-	-	unknown(0)	-	-	NULL
TRGC2	6967	genome.wustl.edu	37	7	38279709	38279709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436911	-1	known	p.S162F	0.027	453	0%	180	46.1%	-	-	-	-	-	NULL
TRGC2	6967	genome.wustl.edu	37	7	38279765	38279765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436911	-1	known	p.I143M	0.000	465	0%	176	15.3%	-	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
TARP	445347	genome.wustl.edu	37	7	38299829	38299829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003806.1	-1	reviewed	p.T66A	0.000	313	0.3%	105	39%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
TRGV3	6976	genome.wustl.edu	37	7	38398118	38398118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390346	-1	known	p.D117N	0.189	61	0%	33	12.1%	-	-	possibly_damaging(0.905)	deleterious(0.02)	deleterious(0.742)	HMMPfam_V-set,superfamily_Immunoglobulin
TRGV3	6976	genome.wustl.edu	37	7	38398260	38398260	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390346	-1	known	p.D69	0.000	156	0%	79	41.8%	-	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
TRGV3	6976	genome.wustl.edu	37	7	38398296	38398296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390346	-1	known	p.Q57H	0.011	150	0%	80	28.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_V-set,superfamily_Immunoglobulin
POU6F2	11281	genome.wustl.edu	37	7	39504031	39504031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007252.3	+1	reviewed	p.R608C	1.000	96	0%	47	12.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
INHBA	3624	genome.wustl.edu	37	7	41739802	41739802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002192.2	-1	reviewed	p.A57	0.973	44	0%	44	34.1%	-	-	-	-	-	HMMPfam_TGFb_propeptide
GLI3	2737	genome.wustl.edu	37	7	42005870	42005870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000168.5	-1	reviewed	p.A934V	1.000	9	0.000	22	0.455	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GLI3	2737	genome.wustl.edu	37	7	42079730	42079730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000168.5	-1	reviewed	p.T312M	1.000	185	0%	67	11.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HECW1	23072	genome.wustl.edu	37	7	43503260	43503260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015052.3	+1	validated	p.Y885H	1.000	70	0%	83	37.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
URGCP	55665	genome.wustl.edu	37	7	43918377	43918377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077663.1	-1	validated	p.L229M	1.000	71	0%	76	40.8%	-	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	NULL
POLD2	5425	genome.wustl.edu	37	7	44155479	44155479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127218.1	-1	validated	p.S345T	0.909	100	0%	167	37.1%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DNA_pol_E_B
POLD2	5425	genome.wustl.edu	37	7	44156578	44156578	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127218.1	-1	validated	p.G206	0.045	45	0%	86	33.7%	-	-	-	-	-	HMMPfam_DNA_pol_E_B
NPC1L1	29881	genome.wustl.edu	37	7	44575542	44575542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013389.2	-1	reviewed	p.R627H	1.000	67	0%	89	36%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Patched,superfamily_SSF82866
NPC1L1	29881	genome.wustl.edu	37	7	44579036	44579036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013389.2	-1	reviewed	p.K320N	0.000	53	0%	88	47.7%	-	-	benign(0.282)	tolerated(0.22)	neutral(0.129)	NULL
NPC1L1	29881	genome.wustl.edu	37	7	44579873	44579873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013389.2	-1	reviewed	p.K41N	0.010	87	0%	112	37.5%	-	-	benign(0.027)	tolerated(0.23)	neutral(0.043)	NULL
OGDH	4967	genome.wustl.edu	37	7	44714049	44714049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002541.3	+1	reviewed	p.K276N	1.000	131	0%	84	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
OGDH	4967	genome.wustl.edu	37	7	44747302	44747302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002541.3	+1	reviewed	p.L973R	1.000	33	0%	39	38.5%	-	-	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44805114	44805114	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031449.3	+1	validated	p.G726	0.000	11	0%	20	55%	-	-	-	-	-	NULL
MYO1G	64005	genome.wustl.edu	37	7	45009017	45009017	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033054.2	-1	validated	p.D523	0.833	59	0%	84	41.7%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NACAD	23148	genome.wustl.edu	37	7	45120280	45120280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000258775	-1	known	p.A1545T	1.000	83	0%	144	44.4%	-	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
ADCY1	107	genome.wustl.edu	37	7	45662332	45662332	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021116.2	+1	reviewed	p.E337V	1.000	88	0%	72	33.3%	-	-	benign(0.125)	deleterious(0.01)	neutral(0.416)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY1	107	genome.wustl.edu	37	7	45701757	45701757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021116.2	+1	reviewed	p.M517L	1.000	99	0%	83	32.5%	-	-	benign(0.108)	tolerated(0.18)	neutral(0.065)	NULL
ADCY1	107	genome.wustl.edu	37	7	45750179	45750179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021116.2	+1	reviewed	p.Q995H	1.000	51	0%	63	52.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1
IGFBP1	3484	genome.wustl.edu	37	7	45931603	45931603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000596.2	+1	reviewed	p.I198L	0.006	91	0%	127	41.7%	-	-	benign(0.001)	tolerated(1)	-	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
PKD1L1	168507	genome.wustl.edu	37	7	47842857	47842857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138295.2	-1	reviewed	p.S2638Y	0.172	178	0%	127	34.6%	-	-	possibly_damaging(0.926)	deleterious(0.04)	deleterious(0.724)	HMMPfam_PKD_channel
PKD1L1	168507	genome.wustl.edu	37	7	47882723	47882723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138295.2	-1	reviewed	p.V1761A	0.000	98	1%	85	30.6%	-	-	benign(0.028)	tolerated(0.07)	neutral(0.321)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47906070	47906070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138295.2	-1	reviewed	p.R1347*	0.053	156	0%	67	23.9%	-	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48314424	48314424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152701.3	+1	reviewed	p.H1721Y	0.407	96	0%	31	32.3%	-	-	probably_damaging(0.954)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48427540	48427540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453246	+1	known	p.E85*	0.004	219	0%	78	34.6%	-	-	possibly_damaging(0.658)	-	-	NULL
ZPBP	11055	genome.wustl.edu	37	7	50057846	50057846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007009.2	-1	validated	p.R258I	0.085	151	0%	51	49%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sp38
SEPT14	346288	genome.wustl.edu	37	7	55873076	55873076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207366.2	-1	validated	p.E332*	1.000	211	0%	162	39.5%	-	-	-	-	-	NULL
ZNF713	349075	genome.wustl.edu	37	7	55991329	55991329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182633.1	+1	provisional	p.A69T	0.671	123	0%	61	26.2%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
PHKG1	5260	genome.wustl.edu	37	7	56148781	56148781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006213.3	-1	reviewed	p.A377D	0.999	19	0%	47	46.8%	-	-	possibly_damaging(0.902)	tolerated(0.11)	deleterious(0.629)	NULL
PHKG1	5260	genome.wustl.edu	37	7	56156593	56156593	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006213.3	-1	reviewed	p.Q14	1.000	80	0%	123	10.6%	-	-	-	-	-	NULL
LOC441228	441228	genome.wustl.edu	37	7	56358882	56358882	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_016387.3	+1	model	NULL	0.981	322	0%	335	39.7%	-	-	-	-	-	-
ZNF479	90827	genome.wustl.edu	37	7	57187668	57187668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033273.1	-1	provisional	p.R485I	0.975	139	0%	36	41.7%	-	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57187827	57187827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033273.1	-1	provisional	p.T432N	0.999	203	0%	45	20%	-	-	unknown(0)	deleterious(0)	-	superfamily_SSF57667
ZNF716	441234	genome.wustl.edu	37	7	57529184	57529184	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000420713	+1	known	p.L339	0.002	138	0%	42	47.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF679	168417	genome.wustl.edu	37	7	63726374	63726374	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153363.2	+1	validated	p.D121	0.000	239	0%	67	40.3%	-	-	-	-	-	NULL
ZNF680	340252	genome.wustl.edu	37	7	63981855	63981855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178558.4	-1	validated	p.R426I	0.956	68	0%	24	33.3%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	63982191	63982191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178558.4	-1	validated	p.R314I	1.000	59	0%	15	33.3%	-	-	benign(0.026)	tolerated(0.21)	neutral(0.045)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF107	51427	genome.wustl.edu	37	7	64167437	64167437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013746.1	+1	validated	p.A252V	0.489	68	0%	45	22.2%	-	-	possibly_damaging(0.921)	deleterious(0.05)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64167645	64167645	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013746.1	+1	validated	p.I321	0.998	32	0%	17	47.1%	-	-	-	-	-	superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64167790	64167790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013746.1	+1	validated	p.N370H	0.139	62	0%	41	39%	-	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64168878	64168878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013746.1	+1	validated	p.F732L	0.000	51	0%	36	25%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64291429	64291429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000494380	+1	known	p.K107T	0.052	111	0%	52	32.7%	-	-	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
ZNF273	10793	genome.wustl.edu	37	7	64389116	64389116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021148.2	+1	reviewed	p.F470L	0.000	65	0%	29	37.9%	-	-	benign(0.065)	tolerated(0.68)	neutral(0.006)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF273	10793	genome.wustl.edu	37	7	64389223	64389223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021148.2	+1	reviewed	p.R506K	0.342	87	0%	39	41%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439612	64439612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015852.3	-1	validated	p.E113K	0.003	175	0%	89	27%	-	-	benign(0.018)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64451649	64451649	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007253.3	-1	reviewed	p.E586*	0.115	209	0%	69	30.4%	-	-	-	-	-	NULL
GUSB	2990	genome.wustl.edu	37	7	65441067	65441067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000181.3	-1	reviewed	p.P283S	0.991	30	0%	40	25%	-	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain
TYW1	55253	genome.wustl.edu	37	7	66463179	66463179	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018264.2	+1	validated	p.T44	1.000	239	0%	284	30.6%	-	-	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	70228025	70228025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015570.2	+1	validated	p.Q304H	0.073	61	0%	93	36.6%	-	-	benign(0.061)	deleterious(0.02)	neutral(0.387)	NULL
AUTS2	26053	genome.wustl.edu	37	7	70239081	70239081	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000443672	+1	known	p.R160*	1.000	102	0%	54	35.2%	-	-	probably_damaging(0.954)	tolerated(0.11)	deleterious(0.669)	NULL
WBSCR17	64409	genome.wustl.edu	37	7	70886016	70886016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022479.1	+1	reviewed	p.S296I	1.000	50	0%	33	36.4%	-	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
WBSCR17	64409	genome.wustl.edu	37	7	71130527	71130527	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022479.1	+1	reviewed	p.V404	1.000	63	0%	29	44.8%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
WBSCR17	64409	genome.wustl.edu	37	7	71177119	71177119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022479.1	+1	reviewed	p.N595K	1.000	27	0%	38	39.5%	-	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	superfamily_Ricin B-like lectins
POM121	9883	genome.wustl.edu	37	7	72398940	72398940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172020.1	+1	reviewed	p.G82D	1.000	227	0%	271	34.7%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
TRIM74	378108	genome.wustl.edu	37	7	72436494	72436494	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198853.1	-1	provisional	p.S65	0.792	73	0%	132	11.4%	-	-	-	-	-	superfamily_RING/U-box
NSUN5	55695	genome.wustl.edu	37	7	72719080	72719080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148956.2	-1	reviewed	p.R172Q	0.226	145	0%	258	37.2%	-	-	unknown(0)	-	-	superfamily_SSF53335
FKBP6	8468	genome.wustl.edu	37	7	72743397	72743397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003602.3	+1	reviewed	p.R70S	0.975	538	0%	682	36.4%	-	-	benign(0.044)	tolerated(0.67)	neutral(0.005)	HMMPfam_FKBP_C,superfamily_SSF54534
BAZ1B	9031	genome.wustl.edu	37	7	72891321	72891321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032408.3	-1	validated	p.I824L	0.006	270	0%	263	40.7%	-	-	benign(0.014)	tolerated(0.36)	neutral(0.021)	NULL
ABHD11	83451	genome.wustl.edu	37	7	73152037	73152037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148912.2	-1	reviewed	p.G106V	1.000	62	0%	91	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
WBSCR28	135886	genome.wustl.edu	37	7	73279466	73279466	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182504.3	+1	validated	p.P72	0.001	49	0%	98	39.8%	-	-	-	-	-	NULL
LIMK1	3984	genome.wustl.edu	37	7	73534960	73534960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002314.2	+1	reviewed	p.L539M	1.000	208	0%	279	38.4%	-	-	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GTF2IRD1	9569	genome.wustl.edu	37	7	73929871	73929871	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016328.1	+1	reviewed	p.G122	0.688	95	0%	168	35.7%	-	-	-	-	-	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74212457	74212457	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173537.2	-1	validated	p.H465P	0.688	420	0%	408	28.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74563988	74563988	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003795.2	+1	reviewed	p.E579*	0.994	202	0%	198	29.8%	-	-	-	-	-	NULL
TRIM73	375593	genome.wustl.edu	37	7	75028412	75028412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198924.2	+1	provisional	p.S65	0.962	41	0%	74	21.6%	-	-	-	-	-	superfamily_SSF57850
POM121C	100101267	genome.wustl.edu	37	7	75052113	75052113	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099415.1	-1	validated	p.E474	0.658	203	0%	397	27.5%	-	-	-	-	-	NULL
SPDYE5	442590	genome.wustl.edu	37	7	75131064	75131064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099435.2	+1	validated	p.P313	0.037	237	0%	225	35.1%	-	-	-	-	-	NULL
STYXL1	51657	genome.wustl.edu	37	7	75630252	75630252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016086.2	-1	validated	p.A256T	0.001	96	0%	98	26.5%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
SRCRB4D	136853	genome.wustl.edu	37	7	76026907	76026907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080744.1	-1	provisional	p.A266S	1.000	4	0.000	27	0.333	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
POMZP3	22932	genome.wustl.edu	37	7	76240878	76240878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454656	-1	known	p.S25F	0.892	98	0%	92	30.4%	-	-	-	-	-	NULL
PTPN12	5782	genome.wustl.edu	37	7	77230078	77230078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002835.3	+1	reviewed	p.R217M	1.000	159	0%	53	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
MAGI2	9863	genome.wustl.edu	37	7	77756687	77756687	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012301.3	-1	reviewed	p.R1084*	1.000	143	0%	108	33.3%	-	-	-	-	-	NULL
GNAT3	346562	genome.wustl.edu	37	7	80091620	80091620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102386.1	-1	provisional	p.M243I	1.000	130	0%	42	35.7%	-	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEMA3C	10512	genome.wustl.edu	37	7	80378329	80378329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006379.2	-1	validated	p.A576V	1.000	209	0%	47	36.2%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	superfamily_SSF48726
SEMA3C	10512	genome.wustl.edu	37	7	80433445	80433445	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006379.2	-1	validated	p.S260A	1.000	224	0%	85	42.4%	-	-	benign(0.011)	tolerated(0.46)	neutral(0.013)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
HGF	3082	genome.wustl.edu	37	7	81331968	81331968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000601.4	-1	reviewed	p.F706V	1.000	140	0%	27	51.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PCLO	27445	genome.wustl.edu	37	7	82387907	82387907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033026.5	-1	validated	p.P5138H	1.000	251	0%	31	25.8%	-	-	unknown(0)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82390726	82390726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033026.5	-1	validated	p.L5031I	1.000	245	0%	50	46%	-	-	unknown(0)	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PCLO	27445	genome.wustl.edu	37	7	82579156	82579156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033026.5	-1	validated	p.A3583V	1.000	356	0.3%	128	28.1%	-	-	probably_damaging(0.99)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583700	82583700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033026.5	-1	validated	p.S2190L	0.991	215	0%	65	47.7%	-	-	probably_damaging(0.978)	-	-	NULL
ABCB4	5244	genome.wustl.edu	37	7	87051491	87051491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018849.2	-1	reviewed	p.F754L	1.000	89	0%	37	40.5%	-	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87175255	87175255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000927.3	-1	reviewed	p.G604E	1.000	86	0%	35	11.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
RUNDC3B	154661	genome.wustl.edu	37	7	87400011	87400011	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138290.2	+1	validated	p.W265*	1.000	99	0%	35	51.4%	-	-	-	-	-	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423666	88423666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152706.2	-1	predicted	p.G197	0.044	223	0.4%	31	29%	-	-	-	-	-	NULL
C7orf63	79846	genome.wustl.edu	37	7	89933355	89933355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389297	+1	known	p.S708Y	0.587	160	0%	55	30.9%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_ARM repeat
GTPBP10	85865	genome.wustl.edu	37	7	90001473	90001473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033107.2	+1	validated	p.P157S	1.000	170	0%	59	52.5%	-	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK14	5218	genome.wustl.edu	37	7	90355945	90355945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012395.2	+1	validated	p.D45G	1.000	123	0%	36	38.9%	-	-	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	NULL
FZD1	8321	genome.wustl.edu	37	7	90894672	90894672	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003505.1	+1	reviewed	p.V159	1.000	66	0%	90	44.4%	-	-	-	-	-	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
MTERF	7978	genome.wustl.edu	37	7	91503069	91503069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006980.3	-1	validated	p.E347K	1.000	123	0%	46	28.3%	-	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_mTERF,HMMSmart_SM00733
AKAP9	10142	genome.wustl.edu	37	7	91631047	91631047	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005751.4	+1	reviewed	p.E606*	1.000	29	0%	12	33.3%	-	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91707175	91707175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005751.4	+1	reviewed	p.T2311A	0.947	76	0%	28	35.7%	-	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91708658	91708658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005751.4	+1	reviewed	p.T2404I	0.001	76	0%	35	40%	-	-	possibly_damaging(0.517)	tolerated(0.13)	neutral(0.426)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91726038	91726038	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005751.4	+1	reviewed	p.R3255	0.192	52	0%	31	29%	-	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91726523	91726523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005751.4	+1	reviewed	p.R3417H	0.932	33	0%	38	31.6%	-	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91774215	91774215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430130	-1	known	p.A857V	0.020	138	0%	199	30.7%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91793895	91793895	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430130	-1	known	p.Q208*	0.107	39	0%	30	46.7%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
ANKIB1	54467	genome.wustl.edu	37	7	91924463	91924463	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019004.1	+1	validated	p.G57	1.000	129	0%	49	34.7%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SAMD9	54809	genome.wustl.edu	37	7	92732573	92732573	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017654.2	-1	validated	p.N946	0.000	167	0%	84	32.1%	-	-	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732789	92732789	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017654.2	-1	validated	p.E874	0.703	60	0%	46	37%	-	-	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92734528	92734528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017654.2	-1	validated	p.P295T	0.001	217	0%	156	13.5%	-	-	probably_damaging(0.996)	tolerated(0.7)	neutral(0.464)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92761070	92761070	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152703.2	-1	validated	p.T1405	0.000	150	0%	54	44.4%	-	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763220	92763220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152703.2	-1	validated	p.R689*	1.000	40	0%	12	33.3%	-	-	-	-	-	NULL
HEPACAM2	253012	genome.wustl.edu	37	7	92825164	92825164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039372.1	-1	provisional	p.P418S	1.000	136	0%	17	29.4%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
COL1A2	1278	genome.wustl.edu	37	7	94059558	94059558	+	Splice_Site	SNP	G	G	T	rs113507489	byCluster	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000089.3	+1	reviewed	e52-1	1.000	174	0%	39	25.6%	-	-	-	-	-	-
CASD1	64921	genome.wustl.edu	37	7	94173756	94173756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022900.4	+1	validated	p.V464I	1.000	205	0%	34	32.4%	-	-	probably_damaging(0.995)	tolerated(0.99)	neutral(0.458)	HMMPfam_Cas1p
ASB4	51666	genome.wustl.edu	37	7	95115339	95115339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016116.1	+1	reviewed	p.R19I	0.535	119	0%	57	31.6%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SLC25A13	10165	genome.wustl.edu	37	7	95751246	95751246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014251.2	-1	reviewed	p.A552V	1.000	110	0%	60	43.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A13	10165	genome.wustl.edu	37	7	95775967	95775967	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014251.2	-1	reviewed	p.I451	0.120	50	0%	36	16.7%	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A13	10165	genome.wustl.edu	37	7	95818928	95818928	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014251.2	-1	reviewed	p.I271	1.000	106	0%	44	11.4%	-	-	-	-	-	superfamily_SSF47473
ASNS	440	genome.wustl.edu	37	7	97484019	97484019	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454046	-1	known	p.N395	0.023	65	0%	24	41.7%	-	-	-	-	-	NULL
LMTK2	22853	genome.wustl.edu	37	7	97820925	97820925	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014916.3	+1	reviewed	e11-1	1.000	80	1.3%	92	30.4%	-	-	-	-	-	-
TECPR1	25851	genome.wustl.edu	37	7	97861172	97861172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015395.1	-1	provisional	p.D640N	0.501	20	0%	50	28%	-	-	probably_damaging(0.989)	tolerated(0.55)	neutral(0.447)	superfamily_PH domain-like
TRRAP	8295	genome.wustl.edu	37	7	98478803	98478803	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003496.2	+1	validated	p.T10	0.000	96	0%	149	35.6%	-	-	-	-	-	NULL
BUD31	8896	genome.wustl.edu	37	7	99013874	99013874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003910.3	+1	validated	p.I70L	1.000	113	0%	159	37.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_G10
ZKSCAN5	23660	genome.wustl.edu	37	7	99103928	99103928	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014569.3	+1	reviewed	p.E87	1.000	71	0%	89	37.1%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
ZKSCAN5	23660	genome.wustl.edu	37	7	99129039	99129039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014569.3	+1	reviewed	p.H563Y	0.921	122	0%	97	13.4%	-	-	possibly_damaging(0.867)	tolerated(0.91)	neutral(0.337)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN5	23660	genome.wustl.edu	37	7	99129667	99129667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014569.3	+1	reviewed	p.S772F	0.266	102	0%	59	42.4%	-	-	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	superfamily_C2H2 and C2HC zinc fingers
FAM200A	221786	genome.wustl.edu	37	7	99144400	99144400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145111.2	-1	validated	p.L544R	0.983	224	0%	284	31%	-	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
ZNF498	221785	genome.wustl.edu	37	7	99217256	99217256	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145115.2	+1	validated	p.A9	0.462	35	0%	42	35.7%	-	-	-	-	-	NULL
ZNF498	221785	genome.wustl.edu	37	7	99227064	99227064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145115.2	+1	validated	p.E352D	0.942	32	0%	52	32.7%	-	-	benign(0.004)	tolerated(0.51)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF498	221785	genome.wustl.edu	37	7	99227138	99227138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145115.2	+1	validated	p.C377Y	0.995	54	0%	48	20.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF498	221785	genome.wustl.edu	37	7	99227429	99227429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145115.2	+1	validated	p.A474V	0.320	38	0%	51	11.8%	-	-	benign(0.08)	tolerated(1)	neutral(0.005)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AZGP1	563	genome.wustl.edu	37	7	99564766	99564766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001185.3	-1	validated	p.D253Y	0.023	59	0%	63	22.2%	-	-	possibly_damaging(0.547)	deleterious(0)	deleterious(0.630)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
ZKSCAN1	7586	genome.wustl.edu	37	7	99621296	99621296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003439.1	+1	validated	p.R56H	1.000	56	0%	62	40.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SCAN,HMMSmart_SM00431
ZKSCAN1	7586	genome.wustl.edu	37	7	99627575	99627575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003439.1	+1	validated	p.Q224H	1.000	121	0%	99	40.4%	-	-	benign(0.354)	deleterious(0)	deleterious(0.556)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
MCM7	4176	genome.wustl.edu	37	7	99696965	99696965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005916.3	-1	reviewed	p.S113N	0.994	85	0%	161	37.9%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	superfamily_Nucleic acid-binding proteins
AP4M1	9179	genome.wustl.edu	37	7	99699379	99699379	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004722.3	+1	reviewed	p.P14	0.997	50	0%	122	11.5%	-	-	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_Longin_like
C7orf59	389541	genome.wustl.edu	37	7	99751535	99751535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008395.2	+1	validated	p.R83M	1.000	64	0%	96	39.6%	-	-	benign(0.113)	deleterious(0.02)	neutral(0.392)	NULL
C7orf43	55262	genome.wustl.edu	37	7	99755540	99755540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018275.3	-1	predicted	p.V145M	1.000	61	0%	141	36.2%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LOC100287198	100287198	genome.wustl.edu	37	7	99771576	99771576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342774.1	+1	model	p.D413N	0.291	24	0%	61	29.5%	-	-	-	-	-	NULL
GPC2	221914	genome.wustl.edu	37	7	99773494	99773494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152742.1	-1	provisional	p.V117I	0.134	56	0%	102	41.2%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Glypican
GPC2	221914	genome.wustl.edu	37	7	99774660	99774660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152742.1	-1	provisional	p.S55T	1.000	10	0%	23	30.4%	-	-	benign(0.194)	tolerated(0.05)	neutral(0.363)	HMMPfam_Glypican
PILRA	29992	genome.wustl.edu	37	7	99971767	99971767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013439.2	+1	reviewed	p.F55L	0.537	157	0%	191	11%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MEPCE	56257	genome.wustl.edu	37	7	100028915	100028915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019606.4	+1	provisional	p.R425H	1.000	51	0%	127	38.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF53335
NYAP1	222950	genome.wustl.edu	37	7	100086661	100086661	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173564.2	+1	predicted	p.P439	0.964	6	0.000	18	0.333	-	-	-	-	-	NULL
AGFG2	3268	genome.wustl.edu	37	7	100161566	100161566	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429987	+1	known	p.R169H	0.000	51	0%	71	45.1%	-	-	-	-	-	NULL
LRCH4	4034	genome.wustl.edu	37	7	100176364	100176364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002319.3	-1	reviewed	p.R215H	0.995	44	0%	99	30.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52058
FBXO24	26261	genome.wustl.edu	37	7	100187288	100187288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427939	+1	known	p.R9W	0.039	89	0%	93	34.4%	-	-	unknown(0)	-	-	NULL
FBXO24	26261	genome.wustl.edu	37	7	100187889	100187889	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033506.2	+1	reviewed	p.G77	0.940	48	0%	72	9.7%	-	-	-	-	-	HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain
ENSG00000224729	0	genome.wustl.edu	37	7	100190698	100190698	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000442166	-1	known	NULL	0.000	27	0%	57	35.1%	-	-	-	-	-	-
LOC100129845	100129845	genome.wustl.edu	37	7	100197361	100197361	+	RNA	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078369.1	-1	model	NULL	0.000	7	0.000	15	0.600	-	-	-	-	-	-
TFR2	7036	genome.wustl.edu	37	7	100229818	100229818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003227.3	-1	reviewed	p.T285A	1.000	126	0%	227	11.5%	-	-	benign(0.002)	tolerated(0.75)	neutral(0.002)	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
TFR2	7036	genome.wustl.edu	37	7	100238759	100238759	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003227.3	-1	reviewed	p.E42	1.000	19	0%	37	16.2%	-	-	-	-	-	NULL
ACTL6B	51412	genome.wustl.edu	37	7	100243896	100243896	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016188.4	-1	reviewed	p.I392	0.716	55	0%	104	32.7%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
GNB2	2783	genome.wustl.edu	37	7	100274361	100274361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005273.3	+1	reviewed	p.R48W	0.996	23	0%	53	34%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GNB2	2783	genome.wustl.edu	37	7	100274988	100274988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005273.3	+1	reviewed	p.A73T	1.000	48	0%	106	33%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
GIGYF1	64599	genome.wustl.edu	37	7	100279806	100279806	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022574.4	-1	validated	p.H938	0.964	57	0%	112	43.8%	-	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100352898	100352898	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003386.1	+1	reviewed	p.S1058	0.990	44	0%	76	50%	-	-	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
ZAN	7455	genome.wustl.edu	37	7	100359908	100359908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003386.1	+1	reviewed	p.L1305V	1.000	99	0%	129	31.8%	-	-	benign(0.014)	-	-	HMMPfam_VWD,HMMSmart_SM00216
ZAN	7455	genome.wustl.edu	37	7	100369588	100369588	+	Silent	SNP	G	G	A	rs184998547	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003386.1	+1	reviewed	p.A1790	0.000	17	0%	42	35.7%	-	-	-	-	-	HMMPfam_C8
ZAN	7455	genome.wustl.edu	37	7	100377208	100377208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003386.1	+1	reviewed	p.A2153T	0.836	32	0%	64	15.6%	-	-	unknown(0)	deleterious(0)	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100388568	100388568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003386.1	+1	reviewed	p.S2454Y	1.000	80	0%	104	42.3%	-	-	unknown(0)	-	-	NULL
EPHB4	2050	genome.wustl.edu	37	7	100410542	100410542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004444.4	-1	reviewed	p.L649M	1.000	73	0%	131	35.1%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SLC12A9	56996	genome.wustl.edu	37	7	100452339	100452339	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020246.2	+1	validated	p.I93	0.977	56	0%	86	37.2%	-	-	-	-	-	HMMPfam_AA_permease
TRIP6	7205	genome.wustl.edu	37	7	100470306	100470306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003302.2	+1	reviewed	p.E413D	1.000	115	0%	236	11.4%	-	-	possibly_damaging(0.485)	tolerated(0.34)	neutral(0.184)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MUC3A	4584	genome.wustl.edu	37	7	100555565	100555565	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001725354.2	+1	model	p.E1236	0.996	4	0.000	9	0.556	-	-	-	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC12	10071	genome.wustl.edu	37	7	100636703	100636703	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000379442	+1	known	p.S1096	0.006	157	0%	145	13.1%	-	-	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100644623	100644623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000379442	+1	known	p.S3736	0.014	1159	0.1%	1111	11.5%	-	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100676097	100676097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040105.1	+1	provisional	p.S467Y	0.015	423	0%	257	36.6%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100679529	100679529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040105.1	+1	provisional	p.S1611I	0.001	374	0%	176	17%	-	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100679676	100679676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040105.1	+1	provisional	p.S1660I	0.000	334	0%	186	34.4%	-	-	unknown(0)	-	-	NULL
AP1S1	1174	genome.wustl.edu	37	7	100800732	100800732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001283.3	+1	reviewed	p.R86Q	1.000	89	0%	162	32.1%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
AP1S1	1174	genome.wustl.edu	37	7	100803816	100803816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001283.3	+1	reviewed	p.R149Q	1.000	69	0%	149	10.1%	-	-	benign(0.021)	tolerated(0.58)	neutral(0.006)	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100839424	100839424	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440203	-1	known	p.W305*	0.000	26	0%	58	53.4%	-	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101891733	101891733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181552.2	+1	reviewed	p.A1310V	1.000	18	0%	26	34.6%	-	-	probably_damaging(0.988)	tolerated(0.17)	deleterious(0.496)	NULL
PRKRIP1	79706	genome.wustl.edu	37	7	102040046	102040046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024653.3	+1	validated	p.R86H	1.000	55	0%	68	38.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1168
LRWD1	222229	genome.wustl.edu	37	7	102110047	102110047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152892.1	+1	provisional	p.L419I	1.000	90	0%	160	37.5%	-	-	probably_damaging(0.953)	tolerated(0.08)	deleterious(0.697)	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
FBXL13	222235	genome.wustl.edu	37	7	102518011	102518011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145032.3	-1	validated	p.R513Q	1.000	98	0%	33	36.4%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMSmart_SM00367,superfamily_RNI-like
LRRC17	10234	genome.wustl.edu	37	7	102574507	102574507	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031692.2	+1	validated	p.A49	0.923	40	0%	21	42.9%	-	-	-	-	-	NULL
NFE4	58160	genome.wustl.edu	37	7	102616574	102616574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085386.1	+1	reviewed	p.R151Q	0.008	91	0%	53	37.7%	-	-	-	-	-	NULL
DNAJC2	27000	genome.wustl.edu	37	7	102957292	102957292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014377.1	-1	reviewed	p.A471D	1.000	210	0%	124	37.1%	-	-	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
SLC26A5	375611	genome.wustl.edu	37	7	103017301	103017301	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198999.2	-1	reviewed	p.K665	0.998	133	0%	72	41.7%	-	-	-	-	-	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
ORC5	5001	genome.wustl.edu	37	7	103808891	103808891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181747.1	-1	reviewed	p.G303R	0.000	146	0%	90	35.6%	-	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	NULL
MLL5	55904	genome.wustl.edu	37	7	104753728	104753728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018682.3	+1	reviewed	p.A1842V	1.000	60	0%	24	29.2%	-	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
RINT1	60561	genome.wustl.edu	37	7	105205787	105205787	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021930.4	+1	validated	p.P650	0.000	130	0%	65	32.3%	-	-	-	-	-	HMMPfam_RINT1_TIP1
PIK3CG	5294	genome.wustl.edu	37	7	106508826	106508826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002649.2	+1	reviewed	p.V274I	1.000	35	0%	75	37.3%	-	-	benign(0.051)	tolerated(0.06)	neutral(0.326)	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
PIK3CG	5294	genome.wustl.edu	37	7	106509865	106509865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002649.2	+1	reviewed	p.S620I	1.000	78	0%	102	31.4%	-	-	possibly_damaging(0.46)	tolerated(0.13)	neutral(0.403)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
BCAP29	55973	genome.wustl.edu	37	7	107258776	107258776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008405.2	+1	validated	p.S258L	0.779	45	0%	19	42.1%	-	-	unknown(0)	-	-	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107434303	107434303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000111.2	-1	reviewed	p.R52I	0.394	91	0%	37	27%	-	-	benign(0.322)	tolerated(0.16)	neutral(0.161)	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107434917	107434917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000111.2	-1	reviewed	p.R13M	1.000	224	0%	78	25.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107664543	107664543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007356.2	-1	validated	p.V1743I	0.121	237	0%	85	40%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107708470	107708470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007356.2	-1	validated	p.G813S	1.000	90	0%	55	49.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107743556	107743556	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007356.2	-1	validated	p.C371	1.000	29	0%	28	39.3%	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
NRCAM	4897	genome.wustl.edu	37	7	107790386	107790386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037132.1	-1	reviewed	p.S1295Y	1.000	160	0%	42	28.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
GPR85	54329	genome.wustl.edu	37	7	112724596	112724596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018970.6	-1	validated	p.D61Y	1.000	122	0%	92	43.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R3A	5506	genome.wustl.edu	37	7	113518477	113518477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002711.3	-1	reviewed	p.K890N	0.009	98	0%	34	23.5%	-	-	possibly_damaging(0.707)	deleterious(0.01)	deleterious(0.661)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114329941	114329941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148898.2	+1	reviewed	p.R728K	1.000	133	0%	26	42.3%	-	-	unknown(0)	deleterious(0)	-	NULL
TFEC	22797	genome.wustl.edu	37	7	115582009	115582009	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012252.2	-1	validated	p.E201*	1.000	357	0%	66	27.3%	-	-	-	-	-	superfamily_HLH helix-loop-helix DNA-binding domain
ST7	7982	genome.wustl.edu	37	7	116770651	116770651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021908.2	+1	reviewed	p.A186T	1.000	85	0%	14	35.7%	-	-	benign(0.017)	tolerated(0.05)	neutral(0.346)	HMMPfam_ST7
ASZ1	136991	genome.wustl.edu	37	7	117003730	117003730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130768.2	-1	validated	p.I450L	0.997	201	0%	45	37.8%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
KCND2	3751	genome.wustl.edu	37	7	120387737	120387737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012281.2	+1	reviewed	p.R573Q	1.000	119	0%	25	44%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120773893	120773893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024913.4	+1	validated	p.D532Y	0.001	154	0%	20	60%	-	-	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	NULL
WNT16	51384	genome.wustl.edu	37	7	120969663	120969663	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_057168.1	+1	reviewed	p.G46	1.000	31	0%	61	49.2%	-	-	-	-	-	HMMPfam_wnt
PTPRZ1	5803	genome.wustl.edu	37	7	121636476	121636476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002851.2	+1	reviewed	p.E323D	1.000	142	0%	67	37.3%	-	-	benign(0.023)	tolerated(0.18)	neutral(0.057)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRZ1	5803	genome.wustl.edu	37	7	121650412	121650412	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002851.2	+1	reviewed	p.E438*	0.936	169	0%	36	30.6%	-	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121671535	121671535	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002851.2	+1	reviewed	p.V1696	1.000	153	0%	48	27.1%	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
FEZF1	389549	genome.wustl.edu	37	7	121944025	121944025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024613.2	-1	validated	p.A156D	1.000	20	0%	46	34.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122078429	122078429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017954.10	-1	reviewed	p.N814K	1.000	172	0%	51	41.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DUF1041
CADPS2	93664	genome.wustl.edu	37	7	122114520	122114520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017954.10	-1	reviewed	p.P638L	1.000	185	0%	48	43.8%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
IQUB	154865	genome.wustl.edu	37	7	123105037	123105037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178827.4	-1	validated	p.E536D	0.997	92	0%	29	51.7%	-	-	possibly_damaging(0.767)	tolerated(0.09)	deleterious(0.581)	NULL
ASB15	142685	genome.wustl.edu	37	7	123276887	123276887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080928.3	+1	validated	p.L540S	1.000	68	0%	44	43.2%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SOCS_box,HMMSmart_SM00253
SPAM1	6677	genome.wustl.edu	37	7	123594056	123594056	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003117.4	+1	reviewed	p.V144	0.997	63	0%	14	42.9%	-	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
POT1	25913	genome.wustl.edu	37	7	124503425	124503425	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015450.2	-1	reviewed	p.D175	1.000	82	0%	24	54.2%	-	-	-	-	-	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014981	127014981	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000265827	-1	known	p.E137*	1.000	165	0%	52	34.6%	-	-	-	-	-	NULL
GCC1	79571	genome.wustl.edu	37	7	127222210	127222210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024523.5	-1	reviewed	p.R729H	1.000	385	0%	416	36.1%	-	-	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	HMMPfam_GRIP,HMMSmart_SM00755
FSCN3	29999	genome.wustl.edu	37	7	127235769	127235769	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020369.1	+1	provisional	p.R185*	1.000	144	0%	198	37.9%	-	-	-	-	-	superfamily_Actin_crosslink
PAX4	5078	genome.wustl.edu	37	7	127250989	127250989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378740	-1	known	p.A322T	0.127	18	0%	25	48%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
LRRC4	64101	genome.wustl.edu	37	7	127670170	127670170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022143.4	-1	validated	p.R175H	1.000	44	0%	52	30.8%	-	-	possibly_damaging(0.921)	tolerated(0.24)	neutral(0.408)	superfamily_L domain-like
FAM71F2	346653	genome.wustl.edu	37	7	128312470	128312470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012454.3	+1	validated	p.L7I	1.000	63	0%	45	31.1%	-	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
FAM71F1	84691	genome.wustl.edu	37	7	128355670	128355670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032599.2	+1	validated	p.L59F	1.000	68	0%	56	42.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128441353	128441353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022742.3	+1	validated	p.R154W	1.000	94	0%	152	38.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FLNC	2318	genome.wustl.edu	37	7	128478794	128478794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.V450M	0.991	11	0%	25	36%	-	-	possibly_damaging(0.761)	deleterious(0)	deleterious(0.726)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128481560	128481560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.P687L	1.000	84	0%	155	35.5%	-	-	benign(0.012)	tolerated(0.14)	neutral(0.250)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128486445	128486445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.R1352H	0.997	39	0%	80	28.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128490513	128490513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.A1792T	0.993	40	0%	114	32.5%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00557
FLNC	2318	genome.wustl.edu	37	7	128491579	128491579	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.T1913	1.000	56	0%	102	39.2%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128498536	128498536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001458.4	+1	reviewed	p.E2713K	1.000	88	0%	177	37.9%	-	-	benign(0.207)	deleterious(0.02)	neutral(0.403)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TNPO3	23534	genome.wustl.edu	37	7	128626828	128626828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012470.2	-1	validated	p.D549N	1.000	60	0%	27	29.6%	-	-	possibly_damaging(0.696)	deleterious(0.02)	deleterious(0.633)	superfamily_ARM repeat
NRF1	4899	genome.wustl.edu	37	7	129394970	129394970	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040110.1	+1	reviewed	p.S487	1.000	42	0%	38	28.9%	-	-	-	-	-	HMMPfam_Nrf1_activ_bdg
ZC3HC1	51530	genome.wustl.edu	37	7	129664192	129664192	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016478.3	-1	validated	p.R311	0.996	47	0%	58	36.2%	-	-	-	-	-	NULL
ZC3HC1	51530	genome.wustl.edu	37	7	129666073	129666073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016478.3	-1	validated	p.T234I	0.016	151	0%	128	28.9%	-	-	benign(0.285)	tolerated(0.11)	neutral(0.359)	NULL
TMEM209	84928	genome.wustl.edu	37	7	129841919	129841919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032842.3	-1	validated	p.T115M	1.000	49	0%	34	55.9%	-	-	possibly_damaging(0.859)	deleterious(0.03)	deleterious(0.697)	HMMPfam_CytochromB561_N
TMEM209	84928	genome.wustl.edu	37	7	129843931	129843931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032842.3	-1	validated	p.P8H	0.737	175	0%	174	43.1%	-	-	possibly_damaging(0.901)	tolerated(0.07)	deleterious(0.676)	HMMPfam_CytochromB561_N
CPA1	1357	genome.wustl.edu	37	7	130027664	130027664	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001868.2	+1	reviewed	e10-1	1.000	107	0%	79	35.4%	-	-	-	-	-	-
MEST	4232	genome.wustl.edu	37	7	130139737	130139737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002402.2	+1	reviewed	p.R186H	0.990	99	0%	83	34.9%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
COPG2	26958	genome.wustl.edu	37	7	130147134	130147134	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012133.4	-1	validated	p.P395H	0.971	152	0.7%	62	37.1%	-	-	-	-	-	NULL
TSGA13	114960	genome.wustl.edu	37	7	130368433	130368433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052933.2	-1	provisional	p.E34G	0.979	309	0%	157	28.7%	-	-	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
KLF14	136259	genome.wustl.edu	37	7	130417939	130417939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138693.2	-1	reviewed	p.A308T	0.010	59	0%	105	36.2%	-	-	unknown(0)	tolerated(0.29)	-	NULL
MKLN1	4289	genome.wustl.edu	37	7	131071896	131071896	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013255.4	+1	validated	p.L62	1.000	200	0%	102	32.4%	-	-	-	-	-	superfamily_Galactose-binding domain-like,HMMPfam_Muskelin_N
LOC647030	647030	genome.wustl.edu	37	7	131347065	131347065	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_017470.3	-1	model	NULL	0.998	294	0%	180	40.6%	-	-	-	-	-	-
PLXNA4	91584	genome.wustl.edu	37	7	131825491	131825491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020911.1	-1	validated	p.A1769T	1.000	177	0%	155	36.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131887415	131887415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020911.1	-1	validated	p.R859H	0.898	16	0%	29	27.6%	-	-	possibly_damaging(0.668)	deleterious(0.02)	deleterious(0.619)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CHCHD3	54927	genome.wustl.edu	37	7	132481279	132481279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017812.2	-1	provisional	p.R195H	0.994	200	0.5%	42	31%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_CHCH
LRGUK	136332	genome.wustl.edu	37	7	133842866	133842866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144648.1	+1	provisional	p.T250M	0.005	187	0.5%	70	35.7%	-	-	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_LRR_1,superfamily_SSF52058
LRGUK	136332	genome.wustl.edu	37	7	133948671	133948671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144648.1	+1	provisional	p.R808C	0.000	149	0%	58	37.9%	-	-	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	NULL
SLC35B4	84912	genome.wustl.edu	37	7	133994131	133994131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032826.4	-1	validated	p.A60T	1.000	64	0%	39	33.3%	-	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE
AKR1B10	57016	genome.wustl.edu	37	7	134215509	134215509	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020299.4	+1	reviewed	p.E61*	1.000	201	0%	72	38.9%	-	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1B10	57016	genome.wustl.edu	37	7	134217811	134217811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020299.4	+1	reviewed	p.A136V	0.000	144	0%	71	12.7%	-	-	benign(0.017)	tolerated(1)	neutral(0.001)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1B10	57016	genome.wustl.edu	37	7	134221837	134221837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020299.4	+1	reviewed	p.L196R	1.000	161	0%	75	12%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
CALD1	800	genome.wustl.edu	37	7	134625857	134625857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033138.3	+1	reviewed	p.K467N	0.707	105	0%	49	34.7%	-	-	unknown(0)	tolerated(0.34)	-	HMMPfam_Caldesmon
CALD1	800	genome.wustl.edu	37	7	134625989	134625989	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033138.3	+1	reviewed	e5+1	1.000	51	0%	42	35.7%	-	-	-	-	-	-
AGBL3	340351	genome.wustl.edu	37	7	134718929	134718929	+	Missense_Mutation	SNP	G	G	A	rs183782913	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178563.3	+1	provisional	p.R196H	1.000	71	0%	16	50%	-	-	possibly_damaging(0.906)	deleterious(0.03)	deleterious(0.724)	NULL
SLC13A4	26266	genome.wustl.edu	37	7	135386438	135386438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012450.2	-1	validated	p.H234R	0.006	433	0%	307	34.9%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Na_sulph_symp
DGKI	9162	genome.wustl.edu	37	7	137266651	137266651	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004717.2	-1	reviewed	p.N529	1.000	149	0%	63	12.7%	-	-	-	-	-	HMMPfam_DAGK_acc,HMMSmart_DAGKa
TRIM24	8805	genome.wustl.edu	37	7	138239587	138239587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015905.2	+1	reviewed	p.R469Q	1.000	66	0%	10	40%	-	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
ATP6V0A4	50617	genome.wustl.edu	37	7	138394469	138394469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020632.2	-1	reviewed	p.G777R	0.071	78	0%	51	29.4%	-	-	possibly_damaging(0.635)	tolerated(0.32)	neutral(0.246)	HMMPfam_V_ATPase_I
KIAA1549	57670	genome.wustl.edu	37	7	138601865	138601865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020910.2	-1	validated	p.T786K	0.002	84	0%	76	21.1%	-	-	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138602389	138602389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020910.2	-1	validated	p.Q611H	0.015	60	0%	69	10.1%	-	-	benign(0.354)	deleterious(0)	deleterious(0.556)	NULL
ZC3HAV1L	92092	genome.wustl.edu	37	7	138719330	138719330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080660.3	-1	validated	p.R154W	0.003	162	0%	225	32.4%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
ZC3HAV1	56829	genome.wustl.edu	37	7	138738274	138738274	+	Missense_Mutation	SNP	C	C	T	rs187388789	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020119.3	-1	reviewed	p.R791H	0.000	203	0%	154	37.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_PARP,superfamily_ADP-ribosylation
ZC3HAV1	56829	genome.wustl.edu	37	7	138761071	138761071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020119.3	-1	reviewed	p.E553V	0.987	129	0%	105	44.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBXAS1	6916	genome.wustl.edu	37	7	139529235	139529235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001061.4	+1	reviewed	p.V17M	0.990	80	0%	36	30.6%	-	-	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	NULL
JHDM1D	80853	genome.wustl.edu	37	7	139810902	139810902	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000472616	-1	known	p.Q69*	1.000	209	0%	216	12.5%	-	-	benign(0.025)	tolerated(0.52)	neutral(0.010)	NULL
MKRN1	23608	genome.wustl.edu	37	7	140179074	140179074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013446.3	-1	validated	p.A24V	1.000	3	0.000	14	0.357	-	-	unknown(0)	tolerated(0.08)	-	NULL
BRAF	673	genome.wustl.edu	37	7	140454024	140454024	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000496384	-1	known	p.T176M	1.000	224	0%	94	29.8%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MRPS33	51650	genome.wustl.edu	37	7	140710251	140710251	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016071.3	-1	reviewed	p.L61	1.000	190	0%	112	39.3%	-	-	-	-	-	HMMPfam_MRP-S33
KIAA1147	57189	genome.wustl.edu	37	7	141366141	141366141	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080392.1	-1	provisional	p.R256*	0.978	129	0%	106	32.1%	-	-	-	-	-	HMMPfam_DUF2347
WEE2	494551	genome.wustl.edu	37	7	141424046	141424046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105558.1	+1	validated	p.R398C	1.000	171	0%	77	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
MGAM	8972	genome.wustl.edu	37	7	141776524	141776524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000475668	+1	known	p.E1798D	0.898	84	0%	34	35.3%	-	-	unknown(0)	tolerated(0.58)	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141794208	141794208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000475668	+1	known	p.R2407H	1.000	95	0%	59	28.8%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
MGAM	8972	genome.wustl.edu	37	7	141796213	141796213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004668.2	+1	reviewed	p.R1668C	0.000	201	0%	96	15.6%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141803176	141803176	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004668.2	+1	reviewed	p.S1811	0.003	115	0%	25	52%	-	-	-	-	-	NULL
TRBV7-1	28597	genome.wustl.edu	37	7	142032279	142032279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390354	+1	known	p.K33N	0.000	21	0%	13	30.8%	-	-	benign(0.049)	tolerated(0.45)	neutral(0.015)	HMMPfam_V-set,superfamily_SSF48726
TRBV10-2	28584	genome.wustl.edu	37	7	142206632	142206632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000426318	-1	known	p.D75Y	0.000	89	0%	63	36.5%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_V-set,superfamily_SSF48726
TRBJ2-5	28624	genome.wustl.edu	37	7	142494811	142494811	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390417	+1	known	p.R3	0.038	20	0%	55	23.6%	-	-	unknown(0)	-	-	NULL
C7orf34	135927	genome.wustl.edu	37	7	142637443	142637443	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000458732	+1	known	p.E77*	0.304	163	0%	135	34.8%	-	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
KEL	3792	genome.wustl.edu	37	7	142639996	142639996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000420.2	-1	reviewed	p.A636D	0.854	38	0%	26	46.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
KEL	3792	genome.wustl.edu	37	7	142640913	142640913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000420.2	-1	reviewed	p.A517T	0.016	101	0%	92	34.8%	-	-	probably_damaging(0.957)	tolerated(0.22)	neutral(0.443)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
TAS2R40	259286	genome.wustl.edu	37	7	142919330	142919330	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176882.1	+1	provisional	p.L53	0.000	103	0%	47	23.4%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TMEM139	135932	genome.wustl.edu	37	7	142983853	142983853	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153345.1	+1	provisional	p.A194	1.000	124	0%	208	38.5%	-	-	-	-	-	NULL
CLCN1	1180	genome.wustl.edu	37	7	143018550	143018550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000083.2	+1	reviewed	p.A176T	0.998	341	0%	298	37.6%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
ZYX	7791	genome.wustl.edu	37	7	143080290	143080290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010972.1	+1	reviewed	p.E300K	0.001	66	0%	127	38.6%	-	-	benign(0.014)	tolerated(0.83)	neutral(0.001)	NULL
ZYX	7791	genome.wustl.edu	37	7	143085965	143085965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010972.1	+1	reviewed	p.A474T	0.555	20	0%	52	32.7%	-	-	benign(0.113)	tolerated(0.45)	neutral(0.021)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
EPHA1	2041	genome.wustl.edu	37	7	143092425	143092425	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005232.4	-1	reviewed	p.G690	0.997	100	0%	139	41%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA1	2041	genome.wustl.edu	37	7	143092484	143092484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005232.4	-1	reviewed	p.L671I	1.000	115	0%	161	35.4%	-	-	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA1	2041	genome.wustl.edu	37	7	143098585	143098585	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005232.4	-1	reviewed	p.R88	0.053	23	0%	38	44.7%	-	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
TAS2R60	338398	genome.wustl.edu	37	7	143141121	143141121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177437.1	+1	provisional	p.F192L	0.000	113	0%	58	34.5%	-	-	possibly_damaging(0.906)	tolerated(0.5)	neutral(0.369)	HMMPfam_TAS2R,superfamily_SSF81321
CTAGE6P	340307	genome.wustl.edu	37	7	143454130	143454130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178561.4	-1	validated	p.A208T	0.035	847	0%	882	12.7%	-	-	-	-	-	NULL
OR2A2	442361	genome.wustl.edu	37	7	143807066	143807066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005480.2	+1	validated	p.Y131H	1.000	283	0%	68	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2A7	401427	genome.wustl.edu	37	7	143955836	143955836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005328.1	-1	provisional	p.V296L	0.922	644	0%	368	10.1%	-	-	possibly_damaging(0.746)	deleterious(0.02)	deleterious(0.657)	superfamily_Family A G protein-coupled receptor-like
LOC728377	728377	genome.wustl.edu	37	7	143983600	143983600	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078379.1	-1	model	NULL	0.044	99	0%	143	24.5%	-	-	-	-	-	-
LOC728377	728377	genome.wustl.edu	37	7	143983763	143983763	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078379.1	-1	model	NULL	0.001	144	0%	126	15.1%	-	-	-	-	-	-
OR2A1	346528	genome.wustl.edu	37	7	144015545	144015545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005287.1	+1	provisional	p.E110K	0.066	277	0%	99	14.1%	-	-	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
LOC643438	643438	genome.wustl.edu	37	7	148334301	148334301	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_015310.2	+1	model	NULL	0.156	128	0%	72	37.5%	-	-	-	-	-	-
LOC643438	643438	genome.wustl.edu	37	7	148334488	148334488	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_015310.2	+1	model	NULL	0.251	68	0%	53	35.8%	-	-	-	-	-	-
CUL1	8454	genome.wustl.edu	37	7	148454139	148454139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003592.2	+1	validated	p.R127Q	1.000	209	0%	120	30%	-	-	benign(0.008)	tolerated(0.56)	neutral(0.006)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL1	8454	genome.wustl.edu	37	7	148485698	148485698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003592.2	+1	validated	p.D510G	1.000	84	0%	92	12%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
CUL1	8454	genome.wustl.edu	37	7	148489858	148489858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003592.2	+1	validated	p.T616M	1.000	80	0%	83	39.8%	-	-	benign(0.01)	tolerated(0.07)	neutral(0.320)	HMMPfam_Cullin,superfamily_Cullin homology domain
EZH2	2146	genome.wustl.edu	37	7	148506180	148506180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004456.3	-1	reviewed	p.E726D	1.000	149	0%	97	38.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
ZNF786	136051	genome.wustl.edu	37	7	148769330	148769330	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152411.3	-1	validated	p.D178	0.000	53	0%	67	37.3%	-	-	-	-	-	NULL
ZNF425	155054	genome.wustl.edu	37	7	148802561	148802561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001661.2	-1	validated	p.K134N	0.000	169	0%	235	36.2%	-	-	possibly_damaging(0.839)	tolerated(0.43)	neutral(0.334)	NULL
ZNF282	8427	genome.wustl.edu	37	7	148921544	148921544	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003575.2	+1	validated	p.C607	0.998	45	0%	76	36.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF746	155061	genome.wustl.edu	37	7	149171635	149171635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152557.4	-1	validated	p.A592V	0.829	39	0%	100	40%	-	-	benign(0.227)	tolerated(0.13)	neutral(0.275)	NULL
ZNF746	155061	genome.wustl.edu	37	7	149171868	149171868	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152557.4	-1	validated	p.E514	0.978	10	0.000	9	0.778	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KRBA1	84626	genome.wustl.edu	37	7	149418070	149418070	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000496259	+1	known	p.R58*	0.000	33	0%	86	38.4%	-	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
SSPO	23145	genome.wustl.edu	37	7	149489566	149489566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378016	+1	known	p.A1907T	0.053	13	0%	28	42.9%	-	-	-	-	-	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00214,HMMSmart_SM00215
SSPO	23145	genome.wustl.edu	37	7	149506511	149506511	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378016	+1	known	p.Q3095	0.928	5	0.000	36	0.444	-	-	-	-	-	superfamily_Serine proterase inhibitors
SSPO	23145	genome.wustl.edu	37	7	149506617	149506617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378016	+1	known	p.L3131M	0.996	7	0.000	20	0.500	-	-	-	-	-	superfamily_Serine proterase inhibitors
SSPO	23145	genome.wustl.edu	37	7	149516592	149516592	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378016	+1	known	p.R3999*	0.982	7	0.000	21	0.238	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ZNF862	643641	genome.wustl.edu	37	7	149558986	149558986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099220.1	+1	provisional	p.A913T	1.000	25	0%	66	22.7%	-	-	benign(0.208)	tolerated(0.11)	neutral(0.292)	NULL
ZNF862	643641	genome.wustl.edu	37	7	149561236	149561236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099220.1	+1	provisional	p.V1125M	0.000	38	0%	66	36.4%	-	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
GIMAP8	155038	genome.wustl.edu	37	7	150163849	150163849	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175571.2	+1	reviewed	p.S21	0.000	89	0%	29	27.6%	-	-	-	-	-	HMMPfam_AIG1,superfamily_SSF52540
GIMAP8	155038	genome.wustl.edu	37	7	150174534	150174534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175571.2	+1	reviewed	p.D555G	0.000	101	0%	38	31.6%	-	-	possibly_damaging(0.49)	tolerated(0.73)	neutral(0.165)	HMMPfam_AIG1,superfamily_SSF52540
GIMAP4	55303	genome.wustl.edu	37	7	150269340	150269340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018326.2	+1	reviewed	p.A61V	0.000	136	0%	54	27.8%	-	-	possibly_damaging(0.852)	tolerated(0.09)	deleterious(0.624)	HMMPfam_AIG1,superfamily_SSF52540
ABP1	26	genome.wustl.edu	37	7	150554434	150554434	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001091.2	+1	reviewed	p.P292	0.002	11	0%	33	27.3%	-	-	-	-	-	superfamily_Amine oxidase N-terminal region
ABP1	26	genome.wustl.edu	37	7	150558186	150558186	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001091.2	+1	reviewed	p.I715	0.984	33	0%	57	17.5%	-	-	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
KCNH2	3757	genome.wustl.edu	37	7	150654490	150654490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000238.2	-1	reviewed	p.N339K	1.000	121	0%	268	37.7%	-	-	benign(0.424)	deleterious(0.01)	deleterious(0.543)	NULL
ABCB8	11194	genome.wustl.edu	37	7	150730966	150730966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007188.3	+1	reviewed	p.L124M	0.995	28	0%	51	23.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ABC_TM_1
ABCB8	11194	genome.wustl.edu	37	7	150732752	150732752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007188.3	+1	reviewed	p.A284T	1.000	20	0%	46	39.1%	-	-	benign(0.022)	tolerated(0.11)	neutral(0.273)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
ASB10	136371	genome.wustl.edu	37	7	150883612	150883612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142459.1	-1	reviewed	p.A196T	0.996	14	0%	28	32.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PRKAG2	51422	genome.wustl.edu	37	7	151273506	151273506	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016203.3	-1	reviewed	p.N299	0.997	171	0%	88	9.1%	-	-	-	-	-	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
GALNTL5	168391	genome.wustl.edu	37	7	151668068	151668068	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145292.3	+1	validated	p.E96*	0.030	92	0%	76	40.8%	-	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
GALNT11	63917	genome.wustl.edu	37	7	151800240	151800240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022087.2	+1	validated	p.V155I	0.970	134	0%	98	44.9%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT11	63917	genome.wustl.edu	37	7	151802349	151802349	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452146	+1	known	p.R85G	0.998	101	0%	92	35.9%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT11	63917	genome.wustl.edu	37	7	151805284	151805284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022087.2	+1	validated	p.G292R	1.000	36	0%	52	28.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151841931	151841931	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170606.2	-1	reviewed	p.S4737*	1.000	364	0%	152	36.8%	-	-	-	-	-	NULL
DPP6	1804	genome.wustl.edu	37	7	154659744	154659744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000377770	+1	known	p.A585V	0.987	139	0%	148	34.5%	-	-	benign(0.155)	tolerated(0.73)	neutral(0.015)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP6	1804	genome.wustl.edu	37	7	154659777	154659777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000377770	+1	known	p.Y596C	0.964	142	0%	158	36.7%	-	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	superfamily_alpha/beta-Hydrolases
PAXIP1	22976	genome.wustl.edu	37	7	154760576	154760576	+	Silent	SNP	C	C	T	rs61752010		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007349.3	-1	reviewed	p.P445	0.000	64	0%	94	51.1%	-	-	-	-	-	NULL
PAXIP1	22976	genome.wustl.edu	37	7	154767973	154767973	+	Silent	SNP	G	G	A	rs61752017		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007349.3	-1	reviewed	p.C169	0.621	118	0%	82	15.9%	-	-	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
INSIG1	3638	genome.wustl.edu	37	7	155093391	155093391	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000476756	+1	known	p.R85C	0.933	118	0%	171	35.1%	-	-	-	-	-	HMMPfam_INSIG
EN2	2020	genome.wustl.edu	37	7	155255169	155255169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001427.3	+1	reviewed	p.F263L	0.993	59	0%	145	40%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
UBE3C	9690	genome.wustl.edu	37	7	157041158	157041158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014671.2	+1	validated	p.A860T	1.000	95	0%	112	29.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
PTPRN2	5799	genome.wustl.edu	37	7	157959857	157959857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002847.3	-1	reviewed	p.P226S	0.950	31	0%	45	13.3%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158464269	158464269	+	Silent	SNP	C	C	T	rs144031410	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000441982	-1	known	p.R274Q	0.182	140	0%	102	28.4%	-	-	-	-	-	superfamily_ARM repeat
ESYT2	57488	genome.wustl.edu	37	7	158528250	158528250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020728.2	-1	validated	p.V844I	0.986	64	1.6%	69	49.3%	-	-	benign(0.067)	tolerated(0.07)	neutral(0.324)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
VIPR2	7434	genome.wustl.edu	37	7	158824677	158824677	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003382.4	-1	validated	p.I351	0.884	103	0%	184	36.4%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_SSF81321
ZNF596	169270	genome.wustl.edu	37	8	195470	195470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042415.1	+1	validated	p.S208Y	0.043	89	0%	37	54.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
MYOM2	9172	genome.wustl.edu	37	8	2000351	2000351	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003970.2	+1	validated	p.T61	0.000	104	0%	78	35.9%	-	-	-	-	-	NULL
MYOM2	9172	genome.wustl.edu	37	8	2057259	2057259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003970.2	+1	validated	p.E1039D	0.995	120	0%	121	39.7%	-	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
CSMD1	64478	genome.wustl.edu	37	8	3565986	3565986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033225.5	-1	validated	p.R320I	1.000	124	0%	103	29.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANGPT2	285	genome.wustl.edu	37	8	6366456	6366456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001147.2	-1	reviewed	p.G443R	1.000	292	0%	195	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
ANGPT2	285	genome.wustl.edu	37	8	6371272	6371272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001147.2	-1	reviewed	p.K376Q	0.004	124	0%	83	42.2%	-	-	benign(0.005)	tolerated(0.33)	neutral(0.024)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
ANGPT2	285	genome.wustl.edu	37	8	6377418	6377418	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001147.2	-1	reviewed	p.T299	0.440	357	0%	217	11.5%	-	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
MFHAS1	9258	genome.wustl.edu	37	8	8748018	8748018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004225.2	-1	reviewed	p.P851S	1.000	49	0%	62	37.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
MFHAS1	9258	genome.wustl.edu	37	8	8748673	8748673	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004225.2	-1	reviewed	p.P632	0.190	58	0%	103	42.7%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ERI1	90459	genome.wustl.edu	37	8	8865587	8865587	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153332.3	+1	validated	p.T72	0.027	56	0%	93	45.2%	-	-	-	-	-	NULL
TNKS	8658	genome.wustl.edu	37	8	9592559	9592559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003747.2	+1	validated	p.T833I	1.000	61	0%	30	33.3%	-	-	benign(0.247)	deleterious(0.03)	neutral(0.390)	superfamily_Ankyrin repeat
RP1L1	94137	genome.wustl.edu	37	8	10480564	10480564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178857.5	-1	validated	p.R50C	0.987	9	0.000	25	0.200	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF89837
SOX7	83595	genome.wustl.edu	37	8	10583523	10583523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031439.2	-1	reviewed	p.A298T	0.998	143	0%	271	40.2%	-	-	possibly_damaging(0.8)	tolerated(0.54)	neutral(0.308)	NULL
XKR6	286046	genome.wustl.edu	37	8	10756023	10756023	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000382461	-1	known	p.P232H	1.000	128	0%	93	28%	-	-	-	-	-	HMMPfam_XK-related
BLK	640	genome.wustl.edu	37	8	11415527	11415527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001715.2	+1	validated	p.L337M	1.000	114	0%	171	39.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DEFB136	613210	genome.wustl.edu	37	8	11831560	11831560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033018.2	-1	provisional	p.F41L	0.978	112	0%	79	31.6%	-	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	HMMPfam_Defensin_beta
C8orf48	157773	genome.wustl.edu	37	8	13424730	13424730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007090.2	+1	validated	p.K77T	0.000	75	0%	80	43.8%	-	-	possibly_damaging(0.494)	tolerated(0.07)	deleterious(0.484)	NULL
SGCZ	137868	genome.wustl.edu	37	8	14095154	14095154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139167.2	-1	reviewed	p.V124G	0.999	176	0%	87	37.9%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Sarcoglycan_1
MSR1	4481	genome.wustl.edu	37	8	15977988	15977988	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138715.2	-1	reviewed	p.V387	1.000	35	0%	27	25.9%	-	-	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
MTMR7	9108	genome.wustl.edu	37	8	17157628	17157628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004686.4	-1	reviewed	p.A576T	0.998	217	0%	65	24.6%	-	-	possibly_damaging(0.647)	tolerated(0.57)	neutral(0.233)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17407881	17407881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003046.5	+1	validated	p.T297M	0.892	361	0%	122	45.1%	-	-	benign(0.078)	deleterious(0.03)	neutral(0.370)	HMMPfam_AA_permease
PDGFRL	5157	genome.wustl.edu	37	8	17486009	17486009	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006207.1	+1	reviewed	p.L173	0.931	86	0%	53	41.5%	-	-	-	-	-	superfamily_Immunoglobulin
NAT1	9	genome.wustl.edu	37	8	18080021	18080021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000662.5	+1	reviewed	p.E155D	0.014	128	0%	32	37.5%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
PSD3	23362	genome.wustl.edu	37	8	18793570	18793570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015310.3	-1	validated	p.R35K	0.568	91	0%	41	48.8%	-	-	unknown(0)	tolerated(0.3)	-	NULL
SH2D4A	63898	genome.wustl.edu	37	8	19218809	19218809	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022071.3	+1	validated	p.S230	0.000	123	0%	35	25.7%	-	-	-	-	-	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19263452	19263452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130518.1	-1	validated	p.R480C	1.000	78	0%	50	32%	-	-	probably_damaging(0.986)	tolerated(0.18)	deleterious(0.490)	HMMPfam_CHGN,superfamily_SSF53448
INTS10	55174	genome.wustl.edu	37	8	19681423	19681423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018142.2	+1	validated	p.R235H	0.998	143	0%	104	15.4%	-	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
INTS10	55174	genome.wustl.edu	37	8	19681452	19681452	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018142.2	+1	validated	p.L245	0.906	152	0%	113	39.8%	-	-	-	-	-	NULL
INTS10	55174	genome.wustl.edu	37	8	19682313	19682313	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018142.2	+1	validated	e8-1	1.000	89	0%	59	45.8%	-	-	-	-	-	-
LPL	4023	genome.wustl.edu	37	8	19809403	19809403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000311322	+1	known	p.A125T	1.000	108	0%	74	33.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
SLC18A1	6570	genome.wustl.edu	37	8	20038472	20038472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135691.2	-1	validated	p.L2F	1.000	68	0%	36	50%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
LZTS1	11178	genome.wustl.edu	37	8	20107308	20107308	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021020.2	-1	reviewed	p.S572	0.000	70	0%	109	40.4%	-	-	-	-	-	NULL
HR	55806	genome.wustl.edu	37	8	21976785	21976785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005144.4	-1	reviewed	p.H997Y	1.000	26	0%	48	14.6%	-	-	possibly_damaging(0.545)	tolerated(0.07)	deleterious(0.504)	HMMSmart_SM00558
HR	55806	genome.wustl.edu	37	8	21979157	21979157	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005144.4	-1	reviewed	p.G724	0.010	273	0%	539	11.9%	-	-	-	-	-	NULL
LGI3	203190	genome.wustl.edu	37	8	22009106	22009106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139278.2	-1	validated	p.S242F	0.989	51	0%	78	37.2%	-	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	HMMPfam_EPTP
SFTPC	6440	genome.wustl.edu	37	8	22019362	22019362	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003018.3	+1	reviewed	p.E7	1.000	263	0%	471	30.8%	-	-	-	-	-	HMMSmart_SM00019,HMMPfam_SP_C-Propep
BMP1	649	genome.wustl.edu	37	8	22052361	22052361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006129.4	+1	reviewed	p.S523N	1.000	50	0%	78	32.1%	-	-	benign(0)	tolerated(1)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
BMP1	649	genome.wustl.edu	37	8	22054780	22054780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006129.4	+1	reviewed	p.R652C	1.000	67	0%	115	38.3%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SORBS3	10174	genome.wustl.edu	37	8	22424370	22424370	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005775.4	+1	validated	p.A393	0.964	38	0%	113	41.6%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
C8orf58	541565	genome.wustl.edu	37	8	22458554	22458554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013842.1	+1	validated	p.R67Q	0.537	29	0%	45	37.8%	-	-	benign(0.282)	tolerated(0.63)	neutral(0.090)	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22475909	22475909	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021174.4	+1	validated	p.L707	1.000	215	0%	298	39.3%	-	-	-	-	-	NULL
EGR3	1960	genome.wustl.edu	37	8	22548403	22548403	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004430.2	-1	reviewed	p.P249	1.000	76	0%	229	38%	-	-	-	-	-	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22862040	22862040	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015178.2	+1	validated	p.I31	1.000	42	0%	102	32.4%	-	-	-	-	-	HMMSmart_RHO,superfamily_SSF52540
TNFRSF10C	8794	genome.wustl.edu	37	8	22974222	22974222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003841.2	+1	reviewed	p.F153C	0.002	93	1.1%	106	40.6%	-	-	benign(0.169)	-	-	NULL
TNFRSF10D	8793	genome.wustl.edu	37	8	23001972	23001972	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003840.3	-1	reviewed	p.Q315	0.000	38	0%	47	12.8%	-	-	-	-	-	NULL
CHMP7	91782	genome.wustl.edu	37	8	23117725	23117725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152272.3	+1	validated	p.D397N	0.988	87	0%	80	27.5%	-	-	possibly_damaging(0.694)	tolerated(0.1)	deleterious(0.535)	HMMPfam_Snf7
LOXL2	4017	genome.wustl.edu	37	8	23156440	23156440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002318.2	-1	reviewed	p.F718	0.990	100	0%	148	12.2%	-	-	-	-	-	HMMPfam_Lysyl_oxidase
LOXL2	4017	genome.wustl.edu	37	8	23198553	23198553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002318.2	-1	reviewed	p.G232D	1.000	81	0%	105	43.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
LOXL2	4017	genome.wustl.edu	37	8	23225582	23225582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002318.2	-1	reviewed	p.V95I	1.000	13	0%	18	38.9%	-	-	possibly_damaging(0.779)	tolerated(0.06)	deleterious(0.614)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
STC1	6781	genome.wustl.edu	37	8	23702371	23702371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003155.2	-1	reviewed	p.P219L	1.000	175	0%	60	11.7%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Stanniocalcin
ADAMDEC1	27299	genome.wustl.edu	37	8	24253291	24253291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014479.3	+1	validated	p.S141N	0.978	149	0%	40	15%	-	-	benign(0.229)	deleterious(0.04)	neutral(0.372)	HMMPfam_Pep_M12B_propep
ADAMDEC1	27299	genome.wustl.edu	37	8	24259439	24259440	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014479.3	+1	validated	p.D387fs	1.000:0.989	-	-	-	-	-	-	-	-	-	HMMPfam_Reprolysin,superfamily_SSF55486
ADAM7	8756	genome.wustl.edu	37	8	24348393	24348393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000380789	+1	known	p.S450P	0.999	265	0%	90	32.2%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1
CDCA2	157313	genome.wustl.edu	37	8	25323804	25323804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152562.2	+1	validated	p.F167L	0.127	85	0%	53	30.2%	-	-	benign(0.36)	tolerated(0.3)	neutral(0.143)	NULL
DPYSL2	1808	genome.wustl.edu	37	8	26492404	26492404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001386.4	+1	validated	p.A267T	1.000	61	0%	59	10.2%	-	-	possibly_damaging(0.878)	deleterious(0)	deleterious(0.786)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
ADRA1A	148	genome.wustl.edu	37	8	26628131	26628131	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033303.3	-1	reviewed	p.F312L	1.000	128	0.8%	71	42.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM35	23087	genome.wustl.edu	37	8	27151614	27151614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_171982.3	-1	validated	p.D249N	0.946	93	0%	55	32.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SCARA3	51435	genome.wustl.edu	37	8	27528420	27528420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016240.2	+1	reviewed	p.A458D	0.932	14	0%	16	43.8%	-	-	benign(0.053)	-	-	HMMPfam_Collagen
SCARA3	51435	genome.wustl.edu	37	8	27528579	27528579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016240.2	+1	reviewed	p.G511D	0.998	6	0.000	14	0.571	-	-	probably_damaging(0.989)	-	-	HMMPfam_Collagen
ESCO2	157570	genome.wustl.edu	37	8	27634454	27634454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017420.2	+1	reviewed	p.A210V	1.000	50	0%	63	14.3%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ZNF395	55893	genome.wustl.edu	37	8	28206719	28206719	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018660.2	-1	validated	p.S451	0.971	53	0%	120	31.7%	-	-	-	-	-	NULL
INTS9	55756	genome.wustl.edu	37	8	28671121	28671121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018250.3	-1	reviewed	p.P166H	1.000	151	0%	41	46.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DUSP4	1846	genome.wustl.edu	37	8	29197741	29197741	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001394.5	-1	reviewed	p.S151	1.000	40	0%	48	43.8%	-	-	-	-	-	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
GSR	2936	genome.wustl.edu	37	8	30538552	30538552	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000637.2	-1	validated	p.E430*	1.000	262	0%	132	40.2%	-	-	-	-	-	HMMPfam_Pyr_redox_dim,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
UBXN8	7993	genome.wustl.edu	37	8	30608998	30608998	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000265616	+1	known	p.W58*	1.000	346	0%	255	34.9%	-	-	-	-	-	NULL
PPP2CB	5516	genome.wustl.edu	37	8	30651484	30651484	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009552.1	-1	reviewed	p.N229	1.000	91	0%	34	44.1%	-	-	-	-	-	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
TEX15	56154	genome.wustl.edu	37	8	30702461	30702461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031271.3	-1	validated	p.R1358I	0.000	129	0%	43	11.6%	-	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
TEX15	56154	genome.wustl.edu	37	8	30706241	30706241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031271.3	-1	validated	p.E98V	0.000	238	0%	74	37.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
WRN	7486	genome.wustl.edu	37	8	30933694	30933694	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000553.4	+1	reviewed	p.E244*	0.578	65	0%	40	30%	-	-	-	-	-	NULL
FUT10	84750	genome.wustl.edu	37	8	33247284	33247284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032664.3	-1	validated	p.P137T	1.000	95	0%	56	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_10
TTI2	80185	genome.wustl.edu	37	8	33361317	33361317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102401.1	-1	validated	p.R355H	1.000	75	0%	42	47.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_DUF2454
RNF122	79845	genome.wustl.edu	37	8	33416277	33416277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024787.2	-1	reviewed	p.G13D	1.000	93	0%	98	18.4%	-	-	benign(0.008)	tolerated(0.19)	neutral(0.050)	NULL
DUSP26	78986	genome.wustl.edu	37	8	33449606	33449606	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024025.1	-1	provisional	p.G187	1.000	37	0%	69	36.2%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
UNC5D	137970	genome.wustl.edu	37	8	35544172	35544172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080872.2	+1	validated	p.F343L	1.000	136	0%	32	28.1%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RAB11FIP1	80223	genome.wustl.edu	37	8	37730049	37730049	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002814.2	-1	validated	p.G757	0.000	95	0%	65	40%	-	-	-	-	-	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37730315	37730315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002814.2	-1	validated	p.D669N	0.000	154	0%	127	40.9%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37732284	37732284	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002814.2	-1	validated	p.T457	0.000	60	0%	55	38.2%	-	-	-	-	-	NULL
ASH2L	9070	genome.wustl.edu	37	8	37971744	37971744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004674.3	+1	validated	p.C207Y	1.000	99	0%	44	40.9%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
TACC1	6867	genome.wustl.edu	37	8	38646246	38646246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006283.2	+1	reviewed	p.E62D	1.000	143	0%	188	36.7%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
IDO2	169355	genome.wustl.edu	37	8	39840263	39840263	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194294.2	+1	validated	p.T149	0.633	136	0%	102	38.2%	-	-	-	-	-	HMMPfam_IDO
IDO2	169355	genome.wustl.edu	37	8	39871153	39871153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194294.2	+1	validated	p.Y276*	0.999	135	0%	39	33.3%	-	-	-	-	-	HMMPfam_IDO
NKX6-3	157848	genome.wustl.edu	37	8	41504084	41504084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152568.2	-1	provisional	p.D98N	1.000	21	0%	35	48.6%	-	-	possibly_damaging(0.8)	tolerated(0.15)	deleterious(0.542)	NULL
ANK1	286	genome.wustl.edu	37	8	41521258	41521258	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142446.1	-1	reviewed	p.G1840	0.819	179	0%	272	26.5%	-	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41550271	41550271	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142446.1	-1	reviewed	p.P1292	0.892	51	0%	102	37.3%	-	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41551615	41551615	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142446.1	-1	reviewed	p.Q1152	1.000	32	0%	48	43.8%	-	-	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41792352	41792352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099412.1	-1	validated	p.R1129Q	0.981	109	0%	119	27.7%	-	-	unknown(0)	deleterious(0.03)	-	NULL
AP3M2	10947	genome.wustl.edu	37	8	42019911	42019911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134296.1	+1	reviewed	p.E186D	1.000	204	0%	127	40.9%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
AP3M2	10947	genome.wustl.edu	37	8	42024777	42024777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134296.1	+1	reviewed	p.T300M	1.000	94	0%	62	9.7%	-	-	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
IKBKB	3551	genome.wustl.edu	37	8	42179577	42179577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001556.1	+1	validated	p.R582*	0.993	179	0%	182	37.4%	-	-	-	-	-	NULL
IKBKB	3551	genome.wustl.edu	37	8	42179985	42179985	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001556.1	+1	validated	p.E653	0.998	146	0%	146	33.6%	-	-	-	-	-	NULL
DKK4	27121	genome.wustl.edu	37	8	42232315	42232315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014420.2	-1	reviewed	p.R127G	0.167	433	0%	251	30.3%	-	-	unknown(0)	tolerated(0.52)	-	NULL
RNF170	81790	genome.wustl.edu	37	8	42720613	42720613	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030954.3	-1	validated	p.Y114	1.000	107	0%	91	28.6%	-	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
HOOK3	84376	genome.wustl.edu	37	8	42814435	42814435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032410.3	+1	validated	p.R198I	1.000	169	0%	84	42.9%	-	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_HOOK
FNTA	2339	genome.wustl.edu	37	8	42932496	42932496	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002027.2	+1	reviewed	p.E257	0.992	90	0%	40	37.5%	-	-	-	-	-	superfamily_Protein prenylyltransferase
SGK196	84197	genome.wustl.edu	37	8	42977709	42977709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032237.3	+1	validated	p.E248K	1.000	49	0%	44	43.2%	-	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ENSG00000215177	0	genome.wustl.edu	37	8	48114517	48114517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000399730	-1	known	p.A2T	1.000	52	0%	43	37.2%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48715979	48715979	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001081640.1	-1	validated	p.T3270M	0.000	91	0%	53	28.3%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48749008	48749008	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001081640.1	-1	validated	p.A2614V	0.000	68	0%	89	47.2%	-	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48752611	48752611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000314191	-1	known	p.Y2473H	1.000	119	0%	104	43.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48845714	48845714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000314191	-1	known	p.E548*	1.000	86	0%	50	48%	-	-	-	-	-	superfamily_ARM repeat
MCM4	4173	genome.wustl.edu	37	8	48874133	48874133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005914.2	+1	reviewed	p.T43N	0.996	86	0%	165	35.8%	-	-	possibly_damaging(0.691)	tolerated(0.53)	neutral(0.255)	NULL
SNTG1	54212	genome.wustl.edu	37	8	51415350	51415350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018967.2	+1	reviewed	p.R126W	1.000	100	0%	28	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PXDNL	137902	genome.wustl.edu	37	8	52469460	52469460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144651.4	-1	validated	p.K107T	1.000	125	0%	25	44%	-	-	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	HMMSmart_SM00369,superfamily_L domain-like
PXDNL	137902	genome.wustl.edu	37	8	52567280	52567280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144651.4	-1	validated	p.A69T	0.024	228	0%	95	34.7%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PCMTD1	115294	genome.wustl.edu	37	8	52733196	52733196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052937.2	-1	validated	p.M263I	1.000	292	6.5%	324	10.2%	-	-	possibly_damaging(0.452)	tolerated(0.42)	neutral(0.162)	NULL
PCMTD1	115294	genome.wustl.edu	37	8	52744027	52744027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052937.2	-1	validated	p.G228D	1.000	153	0%	55	29.1%	-	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	NULL
ST18	9705	genome.wustl.edu	37	8	53062464	53062464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014682.2	-1	validated	p.S627Y	1.000	389	0%	147	38.1%	-	-	benign(0.028)	deleterious(0.04)	neutral(0.350)	HMMPfam_MYT1
RB1CC1	9821	genome.wustl.edu	37	8	53569924	53569924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014781.4	-1	reviewed	p.F822C	0.999	150	0%	42	38.1%	-	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
OPRK1	4986	genome.wustl.edu	37	8	54142152	54142152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000912.3	-1	validated	p.F283S	1.000	75	0%	38	34.2%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_7tm_1,superfamily_SSF81321
OPRK1	4986	genome.wustl.edu	37	8	54147645	54147645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000912.3	-1	validated	p.N95T	1.000	139	0%	72	50%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,superfamily_SSF81321
MRPL15	29088	genome.wustl.edu	37	8	55055303	55055303	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014175.3	+1	reviewed	p.N170	1.000	197	0%	161	39.1%	-	-	-	-	-	superfamily_SSF52080
LOC401480	401480	genome.wustl.edu	37	8	55534552	55534552	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040305.2	-1	model	NULL	0.002	20	0%	16	37.5%	-	-	-	-	-	-
RP1	6101	genome.wustl.edu	37	8	55539308	55539308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006269.1	+1	reviewed	p.D956Y	0.000	59	0%	28	32.1%	-	-	possibly_damaging(0.678)	deleterious(0.01)	deleterious(0.647)	NULL
RP1	6101	genome.wustl.edu	37	8	55542156	55542156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006269.1	+1	reviewed	p.D1905G	1.000	104	1%	58	36.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RP1	6101	genome.wustl.edu	37	8	55542468	55542468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006269.1	+1	reviewed	p.R2009I	0.001	75	0%	36	38.9%	-	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	NULL
RP1	6101	genome.wustl.edu	37	8	55542638	55542638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006269.1	+1	reviewed	p.D2066N	1.000	60	0%	28	46.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MOS	4342	genome.wustl.edu	37	8	57026208	57026208	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005372.1	-1	validated	p.L112	1.000	31	0%	88	31.8%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
PLAG1	5324	genome.wustl.edu	37	8	57078825	57078825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114634.1	-1	reviewed	p.R494C	1.000	98	0%	49	24.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM110B	90362	genome.wustl.edu	37	8	59059413	59059413	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_147189.2	+1	validated	p.S208	0.025	58	0%	71	31%	-	-	-	-	-	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59409736	59409736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000780.3	-1	reviewed	p.R112I	0.992	119	0%	74	31.1%	-	-	benign(0.115)	tolerated(0.16)	neutral(0.068)	HMMPfam_p450,superfamily_Cytochrome_P450
NSMAF	8439	genome.wustl.edu	37	8	59496667	59496667	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144772.1	-1	reviewed	p.*949Q	1.000	197	0%	61	29.5%	-	-	-	-	-	NULL
CHD7	55636	genome.wustl.edu	37	8	61713037	61713037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017780.2	+1	reviewed	p.A777T	1.000	69	0%	27	25.9%	-	-	benign(0.051)	tolerated(0.57)	neutral(0.009)	NULL
CHD7	55636	genome.wustl.edu	37	8	61720811	61720811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017780.2	+1	reviewed	p.F826L	1.000	215	0%	112	44.6%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
NKAIN3	286183	genome.wustl.edu	37	8	63492178	63492178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173688.2	+1	provisional	p.I45M	1.000	292	0%	89	36%	-	-	probably_damaging(0.982)	tolerated(0.34)	neutral(0.450)	HMMPfam_NKAIN
TTPA	7274	genome.wustl.edu	37	8	63973948	63973948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000370.3	-1	reviewed	p.L234I	0.130	137	0%	63	12.7%	-	-	benign(0.015)	tolerated(0.45)	neutral(0.013)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
TRIM55	84675	genome.wustl.edu	37	8	67066356	67066356	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_184085.1	+1	reviewed	p.A437	1.000	48	0%	17	41.2%	-	-	-	-	-	NULL
TRIM55	84675	genome.wustl.edu	37	8	67086758	67086758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_184085.1	+1	reviewed	p.G526V	0.650	114	0%	143	42%	-	-	benign(0.09)	deleterious(0)	neutral(0.451)	NULL
RRS1	23212	genome.wustl.edu	37	8	67341789	67341789	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015169.3	+1	validated	p.R141	0.999	8	0.000	22	0.455	-	-	-	-	-	HMMPfam_RRS1
ADHFE1	137872	genome.wustl.edu	37	8	67372597	67372597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144650.2	+1	validated	p.T406M	0.999	40	0%	37	32.4%	-	-	benign(0.144)	tolerated(0.11)	neutral(0.284)	HMMPfam_Fe-ADH,superfamily_Dehydroquinate synthase-like
ADHFE1	137872	genome.wustl.edu	37	8	67380561	67380561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144650.2	+1	validated	p.F460L	1.000	164	0%	69	37.7%	-	-	benign(0.035)	tolerated(0.3)	neutral(0.030)	superfamily_Dehydroquinate synthase-like
MYBL1	4603	genome.wustl.edu	37	8	67488482	67488482	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080416.2	-1	validated	p.N410	0.996	239	0%	107	39.3%	-	-	-	-	-	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67577571	67577571	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025054.4	-1	validated	p.C541	1.000	121	0%	125	40.8%	-	-	-	-	-	NULL
PPP1R42	286187	genome.wustl.edu	37	8	67900750	67900750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013626.2	-1	provisional	p.D185E	0.998	82	0%	58	53.4%	-	-	benign(0.003)	tolerated(0.41)	neutral(0.015)	superfamily_SSF52058
CSPP1	79848	genome.wustl.edu	37	8	68070776	68070776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077204.1	+1	validated	p.R809Q	0.971	163	0%	110	35.5%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68200214	68200214	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006421.3	-1	reviewed	p.E335*	1.000	322	0%	64	45.3%	-	-	-	-	-	superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68423888	68423888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020361.4	-1	validated	p.V107A	0.998	174	0%	56	16.1%	-	-	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
PREX2	80243	genome.wustl.edu	37	8	68950461	68950461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024870.2	+1	validated	p.G258E	1.000	177	0%	38	28.9%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PREX2	80243	genome.wustl.edu	37	8	69009355	69009355	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024870.2	+1	validated	p.E824	1.000	112	0%	30	36.7%	-	-	-	-	-	NULL
SLCO5A1	81796	genome.wustl.edu	37	8	70744674	70744674	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030958.2	-1	reviewed	p.L79	0.000	24	0%	50	14%	-	-	-	-	-	NULL
NCOA2	10499	genome.wustl.edu	37	8	71039265	71039265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006540.2	-1	validated	p.Q1233H	1.000	143	0%	95	47.4%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NCOA2	10499	genome.wustl.edu	37	8	71068554	71068554	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006540.2	-1	validated	p.S682	0.997	62	0%	25	48%	-	-	-	-	-	HMMPfam_SRC-1
XKR9	389668	genome.wustl.edu	37	8	71593552	71593552	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011720.1	+1	provisional	p.G87*	1.000	130	0%	48	43.8%	-	-	-	-	-	HMMPfam_XK-related
LOC392232	392232	genome.wustl.edu	37	8	73142622	73142622	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_037363.2	-1	model	NULL	0.060	149	0%	42	26.2%	-	-	-	-	-	-
LOC392232	392232	genome.wustl.edu	37	8	73157125	73157125	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_037363.2	-1	model	NULL	0.615	102	0%	58	13.8%	-	-	-	-	-	-
LOC100129527	100129527	genome.wustl.edu	37	8	73341897	73341898	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001715839.1	+1	model	p.Q14fs	0.783:0.842	-	-	-	-	-	-	-	-	-	NULL
LOC100129527	100129527	genome.wustl.edu	37	8	73341901	73341902	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001715839.1	+1	model	p.V16fs	0.988:0.995	-	-	-	-	-	-	-	-	-	NULL
KCNB2	9312	genome.wustl.edu	37	8	73848908	73848908	+	Missense_Mutation	SNP	C	C	A	rs146080562		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004770.2	+1	reviewed	p.L440I	1.000	56	0%	23	47.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RPL7	6129	genome.wustl.edu	37	8	74204024	74204024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000971.3	-1	reviewed	p.P138S	1.000	117	0%	205	34.6%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30
JPH1	56704	genome.wustl.edu	37	8	75227528	75227528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020647.2	-1	reviewed	p.R236H	1.000	40	0%	61	31.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
GDAP1	54332	genome.wustl.edu	37	8	75272401	75272401	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018972.2	+1	reviewed	p.E114*	0.998	113	0%	49	44.9%	-	-	-	-	-	NULL
PI15	51050	genome.wustl.edu	37	8	75757638	75757638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015886.3	+1	reviewed	p.R183W	1.000	241	0%	97	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
CRISPLD1	83690	genome.wustl.edu	37	8	75928914	75928914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031461.4	+1	validated	p.N281S	1.000	105	0%	46	34.8%	-	-	benign(0.01)	tolerated(0.13)	neutral(0.253)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77617649	77617649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024721.4	+1	validated	p.E442D	0.991	73	0%	44	25%	-	-	benign(0.032)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77620171	77620171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024721.4	+1	validated	p.G968D	1.000	85	0%	36	38.9%	-	-	probably_damaging(0.961)	-	-	superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77765710	77765710	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024721.4	+1	validated	p.R2140*	1.000	90	0%	46	39.1%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
TPD52	7163	genome.wustl.edu	37	8	80992669	80992669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025252.1	-1	validated	p.D7G	0.993	88	0%	27	51.9%	-	-	benign(0.235)	deleterious(0)	neutral(0.468)	NULL
ZBTB10	65986	genome.wustl.edu	37	8	81411758	81411758	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105539.1	+1	validated	p.Y334*	0.990	104	0%	54	27.8%	-	-	-	-	-	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86021899	86021899	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033402.4	+1	validated	p.I58	0.003	92	0%	118	37.3%	-	-	-	-	-	superfamily_Outer arm dynein light chain 1
C8orf59	401466	genome.wustl.edu	37	8	86129661	86129661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000417663	-1	known	p.F23C	0.007	358	0%	258	36.4%	-	-	possibly_damaging(0.741)	tolerated(0.09)	deleterious(0.568)	NULL
CA13	377677	genome.wustl.edu	37	8	86178894	86178894	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198584.2	+1	validated	p.E138*	1.000	223	0%	112	39.3%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
CA1	759	genome.wustl.edu	37	8	86244739	86244739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128829.2	-1	reviewed	p.L165I	0.079	141	0%	19	26.3%	-	-	benign(0.31)	tolerated(0.09)	neutral(0.393)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
CA3	761	genome.wustl.edu	37	8	86356266	86356266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005181.3	+1	reviewed	p.H119N	1.000	107	0%	76	38.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1
CA2	760	genome.wustl.edu	37	8	86386025	86386025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000067.2	+1	reviewed	p.K112N	0.006	114	0%	57	38.6%	-	-	possibly_damaging(0.769)	tolerated(0.48)	neutral(0.296)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1
ATP6V0D2	245972	genome.wustl.edu	37	8	87111269	87111269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152565.1	+1	validated	p.R21Q	1.000	63	0%	32	31.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
ATP6V0D2	245972	genome.wustl.edu	37	8	87153693	87153693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152565.1	+1	validated	p.D166Y	1.000	253	0%	60	28.3%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
SLC7A13	157724	genome.wustl.edu	37	8	87235284	87235284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138817.2	-1	validated	p.A245V	0.001	166	0%	48	33.3%	-	-	benign(0.074)	deleterious(0.01)	neutral(0.411)	HMMPfam_AA_permease
DCAF4L2	138009	genome.wustl.edu	37	8	88885973	88885973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152418.3	-1	validated	p.R76H	0.161	173	0%	92	28.3%	-	-	possibly_damaging(0.643)	deleterious(0.01)	deleterious(0.631)	superfamily_WD40_like
RIPK2	8767	genome.wustl.edu	37	8	90792329	90792329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003821.5	+1	reviewed	p.L294V	0.825	134	0%	37	48.6%	-	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
OSGIN2	734	genome.wustl.edu	37	8	90921920	90921920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001126111.1	+1	validated	p.S57L	0.999	157	0%	119	37.8%	-	-	benign(0.177)	tolerated(0.09)	neutral(0.313)	NULL
NBN	4683	genome.wustl.edu	37	8	90967655	90967655	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002485.4	-1	reviewed	p.S418*	0.002	278	0%	72	38.9%	-	-	-	-	-	NULL
NECAB1	64168	genome.wustl.edu	37	8	91962081	91962081	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022351.4	+1	validated	p.E303*	1.000	313	0.3%	102	36.3%	-	-	-	-	-	HMMPfam_ABM,superfamily_Dimeric alpha beta barrel
RAD54B	25788	genome.wustl.edu	37	8	95392609	95392609	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012415.2	-1	reviewed	p.Q671*	0.998	152	0%	125	12%	-	-	-	-	-	superfamily_SSF52540
RAD54B	25788	genome.wustl.edu	37	8	95470506	95470506	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012415.2	-1	reviewed	p.P98	0.000	174	0%	61	42.6%	-	-	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95501012	95501012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000442835	-1	known	p.A1750V	0.600	179	0%	88	42%	-	-	-	-	-	NULL
MTERFD1	51001	genome.wustl.edu	37	8	97269311	97269311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015942.3	-1	provisional	p.M122I	1.000	148	0%	118	39.8%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_mTERF
POP1	10940	genome.wustl.edu	37	8	99153052	99153052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015029.2	+1	reviewed	p.G510	0.989	104	0%	68	36.8%	-	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100147862	100147862	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017890.3	+1	reviewed	p.T488	0.054	356	0%	140	41.4%	-	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100733211	100733211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017890.3	+1	reviewed	p.P2354H	1.000	81	0%	36	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101146119	101146119	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029860.2	-1	validated	p.E680*	1.000	267	0%	164	39.6%	-	-	-	-	-	HMMPfam_IBR,HMMSmart_IBR,superfamily_SSF57850
FBXO43	286151	genome.wustl.edu	37	8	101153456	101153456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029860.2	-1	validated	p.E342D	0.961	119	0%	130	43.1%	-	-	benign(0)	tolerated(1)	-	NULL
SNX31	169166	genome.wustl.edu	37	8	101612575	101612575	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152628.3	-1	validated	e9+2	1.000	350	0.3%	137	35.8%	-	-	-	-	-	-
RRM2B	50484	genome.wustl.edu	37	8	103231057	103231057	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015713.4	-1	reviewed	p.L223	0.998	108	0%	53	47.2%	-	-	-	-	-	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin-like
UBR5	51366	genome.wustl.edu	37	8	103341533	103341533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015902.4	-1	reviewed	p.S398F	0.998	119	0%	54	13%	-	-	benign(0.256)	deleterious(0.04)	neutral(0.376)	NULL
KLF10	7071	genome.wustl.edu	37	8	103663491	103663491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005655.2	-1	validated	p.V357I	0.998	94	0%	100	27%	-	-	benign(0.017)	deleterious(0.04)	neutral(0.349)	superfamily_C2H2 and C2HC zinc fingers
AZIN1	51582	genome.wustl.edu	37	8	103841680	103841680	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015878.4	-1	reviewed	p.S352T	1.000	143	0%	47	21.3%	-	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_Orn_DAP_Arg_deC,superfamily_Racem_decarbox_C
ATP6V1C1	528	genome.wustl.edu	37	8	104075266	104075266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001695.4	+1	reviewed	p.R242I	1.000	107	0.9%	30	26.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_V-ATPase_C
FZD6	8323	genome.wustl.edu	37	8	104340512	104340512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003506.3	+1	reviewed	p.R470Q	1.000	165	0%	37	29.7%	-	-	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	HMMPfam_Frizzled
TM7SF4	81501	genome.wustl.edu	37	8	105361055	105361055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030788.2	+1	reviewed	p.R92H	0.977	103	0%	44	43.2%	-	-	benign(0.32)	deleterious(0.01)	deleterious(0.506)	NULL
TM7SF4	81501	genome.wustl.edu	37	8	105361532	105361532	+	Missense_Mutation	SNP	T	T	G	rs79659609	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030788.2	+1	reviewed	p.F251C	0.970	87	0%	43	27.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DC_STAMP
EIF3E	3646	genome.wustl.edu	37	8	109229574	109229574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001568.2	-1	validated	p.V280F	1.000	124	0%	36	36.1%	-	-	possibly_damaging(0.586)	deleterious(0.03)	deleterious(0.567)	NULL
EIF3E	3646	genome.wustl.edu	37	8	109252245	109252245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001568.2	-1	validated	p.E89K	1.000	289	0%	128	33.6%	-	-	benign(0.006)	tolerated(0.77)	neutral(0.001)	HMMPfam_eIF3_N
PKHD1L1	93035	genome.wustl.edu	37	8	110401349	110401349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177531.4	+1	validated	p.S222Y	0.779	336	0%	107	34.6%	-	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
KCNV1	27012	genome.wustl.edu	37	8	110980794	110980794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014379.2	-1	reviewed	p.C342W	1.000	51	0%	43	27.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSMD3	114788	genome.wustl.edu	37	8	113275989	113275989	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.T3247	1.000	117	0%	23	34.8%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113303895	113303895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.A2940S	1.000	132	0%	44	31.8%	-	-	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113392683	113392683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.T2012A	1.000	153	0%	47	42.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113668397	113668397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.K997T	1.000	89	0%	29	31%	-	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114031325	114031325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.R334Q	1.000	182	0%	142	36.6%	-	-	unknown(0)	tolerated(0.1)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114111004	114111004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.S300A	1.000	192	0%	32	28.1%	-	-	unknown(0)	tolerated(0.61)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114449016	114449016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198123.1	-1	validated	p.R23K	1.000	119	0%	121	34.7%	-	-	unknown(0)	tolerated(1)	-	NULL
TRPS1	7227	genome.wustl.edu	37	8	116616735	116616735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014112.2	-1	reviewed	p.K487N	1.000	88	0%	26	23.1%	-	-	possibly_damaging(0.654)	deleterious(0.01)	deleterious(0.636)	NULL
TRPS1	7227	genome.wustl.edu	37	8	116631802	116631802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014112.2	-1	reviewed	p.E175K	0.998	118	0%	41	46.3%	-	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	NULL
SLC30A8	169026	genome.wustl.edu	37	8	118184807	118184807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173851.2	+1	reviewed	p.E333K	1.000	60	0%	20	45%	-	-	benign(0.019)	tolerated(0.64)	neutral(0.004)	HMMPfam_Cation_efflux
MED30	90390	genome.wustl.edu	37	8	118552203	118552203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080651.2	+1	validated	p.A175T	1.000	104	0%	23	34.8%	-	-	benign(0.038)	tolerated(0.85)	neutral(0.003)	NULL
EXT1	2131	genome.wustl.edu	37	8	118812001	118812001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000127.2	-1	reviewed	p.D731Y	1.000	115	0%	40	27.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
EXT1	2131	genome.wustl.edu	37	8	118819526	118819526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000127.2	-1	reviewed	p.R605W	1.000	116	1.7%	48	35.4%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
TNFRSF11B	4982	genome.wustl.edu	37	8	119936627	119936627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002546.3	-1	reviewed	p.I398L	1.000	219	0%	120	34.2%	-	-	benign(0.07)	deleterious(0.01)	neutral(0.411)	NULL
TNFRSF11B	4982	genome.wustl.edu	37	8	119941044	119941044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002546.3	-1	reviewed	p.Q175H	0.316	280	0%	108	38.9%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00208
ENPP2	5168	genome.wustl.edu	37	8	120577161	120577161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006209.3	-1	reviewed	p.K774N	1.000	195	0%	65	40%	-	-	probably_damaging(0.996)	tolerated(0.43)	deleterious(0.475)	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
ENPP2	5168	genome.wustl.edu	37	8	120602777	120602777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006209.3	-1	reviewed	p.R444I	1.000	187	0%	54	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120629746	120629746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006209.3	-1	reviewed	p.M179I	1.000	129	0%	50	36%	-	-	benign(0.206)	deleterious(0.02)	neutral(0.403)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TAF2	6873	genome.wustl.edu	37	8	120772962	120772962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003184.3	-1	reviewed	p.R859W	0.994	115	0%	44	36.4%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
TAF2	6873	genome.wustl.edu	37	8	120803648	120803648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003184.3	-1	reviewed	p.W443C	1.000	175	0%	53	45.3%	-	-	benign(0.256)	tolerated(0.13)	neutral(0.279)	HMMPfam_Peptidase_M1,superfamily_SSF55486
DEPTOR	64798	genome.wustl.edu	37	8	120886171	120886171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022783.2	+1	validated	p.R29C	1.000	53	0%	54	27.8%	-	-	benign(0.079)	deleterious(0)	neutral(0.450)	superfamily_SSF46785
COL14A1	7373	genome.wustl.edu	37	8	121322266	121322266	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021110.1	+1	validated	p.G1474*	1.000	173	0%	71	35.2%	-	-	-	-	-	HMMPfam_Collagen
HAS2	3037	genome.wustl.edu	37	8	122626368	122626368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005328.2	-1	reviewed	p.D547G	1.000	135	0%	48	39.6%	-	-	benign(0.009)	tolerated(0.09)	neutral(0.297)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123965405	123965405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014943.3	+1	reviewed	p.S552Y	1.000	49	0%	43	18.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
WDR67	93594	genome.wustl.edu	37	8	124109567	124109567	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145647.3	+1	validated	p.H239	0.147	155	0%	87	31%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
ZHX1	11244	genome.wustl.edu	37	8	124266571	124266571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017926.1	-1	reviewed	p.I539S	0.599	114	0%	44	47.7%	-	-	possibly_damaging(0.449)	tolerated(0.09)	neutral(0.444)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124361682	124361682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014109.3	-1	reviewed	p.S550Y	1.000	108	0%	39	51.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLHL38	340359	genome.wustl.edu	37	8	124664711	124664711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001081675.2	-1	validated	p.K152N	0.000	29	0%	32	31.2%	-	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_BACK
ANXA13	312	genome.wustl.edu	37	8	124707952	124707952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003954.1	-1	reviewed	p.A164T	0.945	162	0%	86	41.9%	-	-	benign(0.106)	tolerated(0.43)	neutral(0.021)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
FAM91A1	157769	genome.wustl.edu	37	8	124790966	124790966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144963.2	+1	validated	p.A168V	1.000	124	0%	49	26.5%	-	-	benign(0.03)	tolerated(0.14)	neutral(0.251)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125131155	125131155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039112.2	+1	validated	p.R1787Q	0.992	80	0%	23	43.5%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TRMT12	55039	genome.wustl.edu	37	8	125463446	125463446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017956.3	+1	validated	p.V93A	0.072	30	0%	17	35.3%	-	-	benign(0.07)	tolerated(0.07)	neutral(0.324)	NULL
MTSS1	9788	genome.wustl.edu	37	8	125580737	125580737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014751.4	-1	validated	p.Q167H	0.961	80	0%	42	38.1%	-	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	HMMPfam_IMD
SQLE	6713	genome.wustl.edu	37	8	126021295	126021295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003129.3	+1	reviewed	p.V302A	0.783	146	0%	104	51%	-	-	possibly_damaging(0.501)	tolerated(0.07)	deleterious(0.487)	HMMPfam_SE,superfamily_SSF51905
TRIB1	10221	genome.wustl.edu	37	8	126445730	126445730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025195.2	+1	validated	p.R178W	0.998	58	0%	76	30.3%	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MYC	4609	genome.wustl.edu	37	8	128752858	128752858	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002467.4	+1	reviewed	p.V340D	0.888	82	0%	104	42.3%	-	-	benign(0.392)	deleterious(0)	deleterious(0.570)	HMMPfam_Myc_N
ASAP1	50807	genome.wustl.edu	37	8	131127951	131127951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018482.2	-1	validated	p.P699S	1.000	232	0.4%	89	28.1%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_ANK
OC90	729330	genome.wustl.edu	37	8	133044178	133044178	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080399.2	-1	validated	p.G327	0.999	65	0%	23	30.4%	-	-	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
HHLA1	10086	genome.wustl.edu	37	8	133100134	133100134	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145095.1	-1	provisional	p.E183*	0.884	182	0%	86	32.6%	-	-	-	-	-	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133142115	133142115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004519.2	-1	reviewed	p.K671N	0.000	67	0%	35	48.6%	-	-	benign(0.024)	tolerated(0.21)	neutral(0.045)	NULL
TMEM71	137835	genome.wustl.edu	37	8	133740211	133740211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144649.2	-1	validated	p.S151Y	0.012	73	0%	36	47.2%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133806819	133806819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016018.4	+1	validated	p.D83Y	0.543	125	0%	29	44.8%	-	-	possibly_damaging(0.843)	deleterious(0.02)	deleterious(0.706)	superfamily_Tudor/PWWP/MBT
PHF20L1	51105	genome.wustl.edu	37	8	133811054	133811054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016018.4	+1	validated	p.R126H	1.000	127	0%	21	52.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00333,HMMSmart_SM00743,superfamily_Tudor/PWWP/MBT
WISP1	8840	genome.wustl.edu	37	8	134225253	134225253	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003882.2	+1	reviewed	p.G72	1.000	11	0%	26	38.5%	-	-	-	-	-	HMMPfam_IGFBP,HMMSmart_SM00121,PatternScan_IGFBP_N_1
WISP1	8840	genome.wustl.edu	37	8	134237636	134237636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003882.2	+1	reviewed	p.A205D	0.003	24	0%	35	34.3%	-	-	benign(0.061)	deleterious(0.04)	neutral(0.353)	NULL
ZFAT	57623	genome.wustl.edu	37	8	135614434	135614434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020863.3	-1	reviewed	p.E510*	1.000	13	0%	17	23.5%	-	-	-	-	-	NULL
ZFAT	57623	genome.wustl.edu	37	8	135614978	135614978	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020863.3	-1	reviewed	p.C328	0.976	99	0%	117	40.2%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL22A1	169044	genome.wustl.edu	37	8	139737654	139737654	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152888.1	-1	validated	p.G723	0.757	65	0%	59	45.8%	-	-	-	-	-	HMMPfam_Collagen
COL22A1	169044	genome.wustl.edu	37	8	139749813	139749813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152888.1	-1	validated	p.K698T	1.000	130	0%	101	12.9%	-	-	unknown(0)	tolerated(0.37)	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139791761	139791761	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152888.1	-1	validated	p.V565	1.000	48	0%	59	39%	-	-	-	-	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139890271	139890271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152888.1	-1	validated	p.R127H	0.044	10	10%	18	50%	-	-	unknown(0)	tolerated(0.68)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TRAPPC9	83696	genome.wustl.edu	37	8	141262901	141262901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031466.5	-1	reviewed	p.E900D	1.000	44	0%	43	41.9%	-	-	probably_damaging(0.996)	tolerated(0.42)	deleterious(0.476)	HMMPfam_Trs120
EIF2C2	27161	genome.wustl.edu	37	8	141557577	141557577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012154.3	-1	reviewed	p.C572*	1.000	67	0%	158	36.7%	-	-	possibly_damaging(0.469)	tolerated(0.1)	neutral(0.441)	NULL
EIF2C2	27161	genome.wustl.edu	37	8	141557713	141557713	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012154.3	-1	reviewed	p.A527V	0.013	68	0%	143	44.1%	-	-	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142160973	142160973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014957.2	+1	validated	p.R179Q	0.681	79	0%	107	34.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_DENN,HMMSmart_SM00799
GPR20	2843	genome.wustl.edu	37	8	142366977	142366977	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005293.2	-1	validated	p.T349	0.000	13	0%	32	53.1%	-	-	-	-	-	NULL
GPR20	2843	genome.wustl.edu	37	8	142367704	142367704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005293.2	-1	validated	p.P107L	1.000	34	0%	72	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARC	23237	genome.wustl.edu	37	8	143695124	143695124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015193.3	-1	validated	p.S170N	1.000	17	0%	36	27.8%	-	-	possibly_damaging(0.489)	tolerated(0.48)	neutral(0.173)	NULL
LY6K	54742	genome.wustl.edu	37	8	143784610	143784610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017527.3	+1	validated	p.P165T	0.012	119	0%	158	36.1%	-	-	unknown(0)	-	-	superfamily_Snake toxin-like
SLURP1	57152	genome.wustl.edu	37	8	143823241	143823241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020427.2	-1	reviewed	p.T53M	0.000	46	0%	94	31.9%	-	-	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	HMMPfam_UPAR_LY6,HMMSmart_LU,superfamily_SSF57302
LY6D	8581	genome.wustl.edu	37	8	143867082	143867082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003695.2	-1	validated	p.V25A	0.894	28	0%	66	30.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like
GML	2765	genome.wustl.edu	37	8	143928032	143928032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002066.2	+1	validated	p.G135*	0.000	138	0%	66	25.8%	-	-	-	-	-	NULL
TOP1MT	116447	genome.wustl.edu	37	8	144399895	144399895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052963.1	-1	reviewed	p.R443H	0.192	24	0%	52	36.5%	-	-	possibly_damaging(0.836)	tolerated(0.12)	deleterious(0.580)	superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I
RHPN1	114822	genome.wustl.edu	37	8	144457752	144457752	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052924.2	+1	validated	p.C30	0.000	16	0%	21	47.6%	-	-	-	-	-	superfamily_PKN_effector
ZC3H3	23144	genome.wustl.edu	37	8	144620817	144620817	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015117.2	-1	validated	p.G240	0.000	7	0.000	26	0.192	-	-	-	-	-	NULL
EEF1D	1936	genome.wustl.edu	37	8	144663400	144663400	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130053.1	-1	reviewed	p.G462	0.952	15	0%	30	40%	-	-	-	-	-	NULL
ZNF623	9831	genome.wustl.edu	37	8	144733083	144733083	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014789.3	+1	validated	p.Y347	0.000	177	0%	134	38.1%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM83H	286077	genome.wustl.edu	37	8	144811352	144811352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198488.3	-1	reviewed	p.R197C	0.935	18	0%	61	23%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
FAM83H	286077	genome.wustl.edu	37	8	144812435	144812435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198488.3	-1	reviewed	p.E106	0.994	17	0%	33	30.3%	-	-	-	-	-	HMMPfam_DUF1669
SCRIB	23513	genome.wustl.edu	37	8	144874797	144874797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182706.3	-1	validated	p.L1396	0.994	19	0%	47	34%	-	-	-	-	-	NULL
EPPK1	83481	genome.wustl.edu	37	8	144946346	144946346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031308.1	-1	validated	p.A359V	1.000	6	0.000	31	0.258	-	-	benign(0.079)	deleterious(0)	neutral(0.450)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144991293	144991293	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201380.2	-1	reviewed	p.F4369	0.976	19	0%	54	33.3%	-	-	-	-	-	superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144992569	144992569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201380.2	-1	reviewed	p.G3944D	0.999	14	0%	22	40.9%	-	-	probably_damaging(1)	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144996794	144996794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201380.2	-1	reviewed	p.E2572K	1.000	26	0%	65	44.6%	-	-	possibly_damaging(0.917)	-	-	NULL
PARP10	84875	genome.wustl.edu	37	8	145057192	145057192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032789.3	-1	validated	p.R822C	0.000	13	0%	35	45.7%	-	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	HMMPfam_PARP,superfamily_SSF56399
HSF1	3297	genome.wustl.edu	37	8	145533467	145533467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005526.2	+1	reviewed	p.L125M	0.643	12	0%	45	42.2%	-	-	benign(0.053)	deleterious(0.05)	neutral(0.349)	HMMPfam_HSF_DNA-bind
ADCK5	203054	genome.wustl.edu	37	8	145616197	145616197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174922.3	+1	validated	p.E162K	0.998	58	0%	98	35.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CPSF1	29894	genome.wustl.edu	37	8	145621891	145621891	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013291.2	-1	validated	p.G916	0.000	66	0%	163	42.9%	-	-	-	-	-	NULL
CPSF1	29894	genome.wustl.edu	37	8	145623259	145623259	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013291.2	-1	validated	p.A661	0.006	11	0%	41	26.8%	-	-	-	-	-	NULL
TONSL	4796	genome.wustl.edu	37	8	145661656	145661656	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013432.4	-1	reviewed	p.P720	0.000	14	0%	22	22.7%	-	-	-	-	-	NULL
MFSD3	113655	genome.wustl.edu	37	8	145736019	145736019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138431.1	+1	provisional	p.R290H	0.463	50	0%	138	29%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
RECQL4	9401	genome.wustl.edu	37	8	145737090	145737090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000428558	-1	known	p.A1159V	1.000	18	0%	52	48.1%	-	-	-	-	-	NULL
LRRC14	9684	genome.wustl.edu	37	8	145745324	145745324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014665.1	+1	provisional	p.S72N	1.000	26	0%	59	13.6%	-	-	benign(0.301)	tolerated(0.53)	neutral(0.101)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146107503	146107503	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021061.3	-1	validated	p.I360	0.187	139	0%	119	38.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF16	7564	genome.wustl.edu	37	8	146157151	146157151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029976.2	-1	reviewed	p.R341I	0.979	140	0%	95	32.6%	-	-	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF16	7564	genome.wustl.edu	37	8	146157848	146157848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029976.2	-1	reviewed	p.L109M	0.002	90	1.1%	79	43%	-	-	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
ZNF16	7564	genome.wustl.edu	37	8	146171551	146171551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029976.2	-1	reviewed	p.E14D	0.045	31	0%	51	31.4%	-	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
C8orf33	65265	genome.wustl.edu	37	8	146278729	146278729	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023080.2	+1	validated	p.T150	0.012	75	0%	143	35%	-	-	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	452083	452083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203447.3	+1	reviewed	p.K1944E	1.000	97	0%	44	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
KANK1	23189	genome.wustl.edu	37	9	732502	732502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015158.2	+1	reviewed	p.R1044W	0.103	87	0%	42	47.6%	-	-	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	superfamily_ANK
DMRT3	58524	genome.wustl.edu	37	9	990745	990745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021240.2	+1	validated	p.N387D	1.000	59	0%	41	29.3%	-	-	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2115925	2115925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003070.3	+1	reviewed	p.A1187V	1.000	30	0%	18	27.8%	-	-	benign(0.355)	tolerated(0.1)	neutral(0.399)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA2	6595	genome.wustl.edu	37	9	2186134	2186134	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003070.3	+1	reviewed	p.K1500	1.000	168	0%	54	31.5%	-	-	-	-	-	HMMSmart_SM00297,superfamily_Bromodomain
RCL1	10171	genome.wustl.edu	37	9	4823588	4823588	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005772.3	+1	validated	p.T59	0.143	217	0%	127	35.4%	-	-	-	-	-	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B
INSL4	3641	genome.wustl.edu	37	9	5233739	5233739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002195.1	+1	reviewed	p.K94N	0.008	76	0%	30	36.7%	-	-	benign(0.348)	deleterious(0)	deleterious(0.554)	NULL
KIAA1432	57589	genome.wustl.edu	37	9	5763492	5763492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020829.2	+1	validated	p.R743I	1.000	126	0%	45	37.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RIC1
KIAA1432	57589	genome.wustl.edu	37	9	5769104	5769104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020829.2	+1	validated	p.I1012S	0.998	45	0%	23	34.8%	-	-	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	NULL
KIAA1432	57589	genome.wustl.edu	37	9	5772975	5772975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020829.2	+1	validated	p.I1214T	1.000	150	0%	45	8.9%	-	-	benign(0.048)	deleterious(0.01)	neutral(0.409)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5797933	5797933	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024896.2	-1	validated	e13-1	1.000	117	0%	59	33.9%	-	-	-	-	-	-
ERMP1	79956	genome.wustl.edu	37	9	5823955	5823955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024896.2	-1	validated	p.R272H	1.000	177	0%	120	40%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
KIAA2026	158358	genome.wustl.edu	37	9	5922566	5922566	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017969.2	-1	validated	p.N1144H	0.723	270	0%	97	10.3%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5922912	5922912	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017969.2	-1	validated	p.T1028	0.920	161	0%	64	37.5%	-	-	-	-	-	NULL
UHRF2	115426	genome.wustl.edu	37	9	6482018	6482018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152896.1	+1	reviewed	p.R437S	1.000	261	0%	123	37.4%	-	-	benign(0.085)	tolerated(0.1)	neutral(0.292)	NULL
UHRF2	115426	genome.wustl.edu	37	9	6500582	6500582	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152896.1	+1	reviewed	p.K679T	0.562	114	0%	42	35.7%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
GLDC	2731	genome.wustl.edu	37	9	6644632	6644632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000170.2	-1	reviewed	p.K106E	1.000	112	0%	213	43.2%	-	-	benign(0.117)	tolerated(0.45)	neutral(0.021)	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
KDM4C	23081	genome.wustl.edu	37	9	6814672	6814672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015061.3	+1	reviewed	p.R121H	1.000	187	0%	130	27.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100287684	100287684	genome.wustl.edu	37	9	6834578	6834578	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342904.1	-1	model	p.A300	1.000	28	0%	25	24%	-	-	-	-	-	NULL
KDM4C	23081	genome.wustl.edu	37	9	7128233	7128233	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015061.3	+1	reviewed	p.I926	0.233	79	0%	38	47.4%	-	-	-	-	-	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT
PTPRD	5789	genome.wustl.edu	37	9	8340380	8340380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002839.3	-1	reviewed	p.I1739T	1.000	131	0%	20	25%	-	-	possibly_damaging(0.705)	deleterious(0.03)	deleterious(0.619)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8376022	8376022	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002839.3	-1	reviewed	p.P1525	1.000	147	0%	28	46.4%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8518261	8518261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002839.3	-1	reviewed	p.R377H	1.000	150	0%	34	29.4%	-	-	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LURAP1L	286343	genome.wustl.edu	37	9	12775744	12775744	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203403.1	+1	validated	p.R10	1.000	11	0%	14	28.6%	-	-	-	-	-	NULL
NFIB	4781	genome.wustl.edu	37	9	14120612	14120612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005596.2	-1	validated	p.R358*	1.000	191	0%	59	37.3%	-	-	-	-	-	HMMPfam_CTF_NFI
C9orf93	203238	genome.wustl.edu	37	9	15744303	15744303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173550.2	+1	predicted	p.E694D	1.000	48	0%	13	30.8%	-	-	benign(0.181)	tolerated(0.33)	neutral(0.041)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18908468	18908468	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040272.4	+1	validated	p.C1737	1.000	79	0%	81	17.3%	-	-	-	-	-	HMMPfam_PLAC
FAM154A	158297	genome.wustl.edu	37	9	18928370	18928370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153707.1	-1	predicted	p.D369N	1.000	76	0%	68	38.2%	-	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
PLIN2	123	genome.wustl.edu	37	9	19126264	19126264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122.2	-1	reviewed	p.T25M	1.000	121	0%	153	30.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Perilipin
DENND4C	55667	genome.wustl.edu	37	9	19372159	19372159	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017925.4	+1	provisional	p.A1670	0.022	119	0%	77	28.6%	-	-	-	-	-	NULL
LOC392288	392288	genome.wustl.edu	37	9	19461275	19461275	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_373277.5	-1	model	p.R261	0.000	52	0%	69	34.8%	-	-	-	-	-	superfamily_Ubiquitin-like
KIAA1797	54914	genome.wustl.edu	37	9	20820381	20820381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017794.3	+1	validated	p.R540K	0.908	111	0%	12	33.3%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20976541	20976541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017794.3	+1	validated	p.N1419H	0.991	157	0%	40	40%	-	-	probably_damaging(0.972)	deleterious(0.05)	deleterious(0.759)	superfamily_ARM-type_fold
IFNA14	3448	genome.wustl.edu	37	9	21239639	21239639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002172.2	-1	validated	p.A99V	0.005	218	0%	60	33.3%	-	-	possibly_damaging(0.512)	deleterious(0.03)	deleterious(0.536)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
KLHL9	55958	genome.wustl.edu	37	9	21333154	21333154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018847.2	-1	validated	p.P569T	1.000	322	0.3%	327	37.6%	-	-	probably_damaging(0.998)	tolerated(0.36)	deleterious(0.494)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
IFNA6	3443	genome.wustl.edu	37	9	21350850	21350850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021002.2	-1	validated	p.V13M	0.600	137	0%	49	40.8%	-	-	benign(0.343)	tolerated(0.11)	neutral(0.380)	HMMPfam_Interferon
PLAA	9373	genome.wustl.edu	37	9	26910336	26910336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031689.2	-1	validated	p.G553C	1.000	134	0%	60	41.7%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_PUL
LRRC19	64922	genome.wustl.edu	37	9	26995553	26995553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022901.2	-1	validated	p.Y360C	0.998	150	0%	52	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEK	7010	genome.wustl.edu	37	9	27157860	27157860	+	Silent	SNP	G	G	A	rs138550182	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000459.3	+1	reviewed	p.L28	1.000	94	0%	46	37%	-	-	-	-	-	HMMPfam_Ig_Tie2_1
C9orf11	54586	genome.wustl.edu	37	9	27296683	27296683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020641.2	-1	validated	p.N44D	0.000	175	0%	107	32.7%	-	-	benign(0.119)	tolerated(0.12)	neutral(0.270)	NULL
IFNK	56832	genome.wustl.edu	37	9	27524634	27524634	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020124.2	+1	reviewed	p.Q100	0.000	97	0%	110	29.1%	-	-	-	-	-	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
C9orf72	203228	genome.wustl.edu	37	9	27548560	27548560	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018325.2	-1	validated	p.D418	1.000	117	0%	37	56.8%	-	-	-	-	-	NULL
ENSG00000211510	0	genome.wustl.edu	37	9	30774250	30774250	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390176	+1	novel	NULL	0.951	15	0%	19	42.1%	-	-	-	-	-	-
DDX58	23586	genome.wustl.edu	37	9	32467809	32467809	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014314.3	-1	reviewed	p.V712	0.999	160	0%	59	39%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOPORS	10210	genome.wustl.edu	37	9	32543853	32543853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005802.3	-1	reviewed	p.D224Y	1.000	93	0%	66	12.1%	-	-	unknown(0)	deleterious(0.02)	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630856	32630856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153809.2	-1	provisional	p.K1574N	1.000	297	0%	122	38.5%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
TAF1L	138474	genome.wustl.edu	37	9	32632387	32632387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153809.2	-1	provisional	p.S1064I	1.000	405	0%	168	34.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NFX1	4799	genome.wustl.edu	37	9	33295129	33295129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002504.3	+1	reviewed	p.P246H	0.998	131	0%	119	31.1%	-	-	benign(0.11)	deleterious(0)	neutral(0.453)	NULL
NOL6	65083	genome.wustl.edu	37	9	33462719	33462719	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022917.4	-1	reviewed	p.V1128	0.319	145	0%	237	42.2%	-	-	-	-	-	HMMPfam_Nrap
NOL6	65083	genome.wustl.edu	37	9	33465308	33465308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022917.4	-1	reviewed	p.R860W	1.000	19	0%	30	46.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nrap
NOL6	65083	genome.wustl.edu	37	9	33469502	33469502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022917.4	-1	reviewed	p.P241L	1.000	89	0%	144	17.4%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_Nrap
NOL6	65083	genome.wustl.edu	37	9	33472106	33472106	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022917.4	-1	reviewed	p.L92	0.996	77	0%	82	45.1%	-	-	-	-	-	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33548710	33548710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001718334.2	+1	model	p.E708K	0.256	133	0%	59	39%	-	-	probably_damaging(0.984)	tolerated(0.09)	deleterious(0.727)	NULL
DCAF12	25853	genome.wustl.edu	37	9	34126353	34126353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015397.3	-1	reviewed	p.Q26R	1.000	13	0%	31	38.7%	-	-	benign(0.079)	tolerated(0.06)	neutral(0.328)	NULL
UBAP1	51271	genome.wustl.edu	37	9	34250704	34250704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016525.4	+1	reviewed	p.D439N	1.000	165	0%	116	34.5%	-	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	NULL
KIAA1161	57462	genome.wustl.edu	37	9	34371951	34371951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000297625	-1	known	p.D297Y	1.000	41	0%	96	35.4%	-	-	benign(0.009)	deleterious(0.03)	neutral(0.365)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
CNTFR	1271	genome.wustl.edu	37	9	34564665	34564665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000351266	-1	known	p.S84I	1.000	96	0%	165	13.9%	-	-	possibly_damaging(0.918)	deleterious(0.05)	deleterious(0.714)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RPP25L	138716	genome.wustl.edu	37	9	34611010	34611010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148178.1	-1	validated	p.S95N	1.000	21	0%	56	30.4%	-	-	benign(0.332)	tolerated(0.3)	neutral(0.133)	superfamily_SSF82704
GALT	2592	genome.wustl.edu	37	9	34647914	34647914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000155.2	+1	reviewed	p.A155T	1.000	140	0%	215	32.1%	-	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	HMMPfam_GalP_UDP_transf,superfamily_HIT-like
DNAJB5	25822	genome.wustl.edu	37	9	34996541	34996541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135005.1	+1	validated	p.R236H	0.996	54	0%	65	40%	-	-	benign(0.085)	tolerated(0.06)	neutral(0.329)	NULL
VCP	7415	genome.wustl.edu	37	9	35059111	35059111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007126.3	-1	reviewed	p.E704K	1.000	65	0%	58	27.6%	-	-	benign(0.042)	tolerated(0.24)	neutral(0.040)	superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35060843	35060843	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007126.3	-1	reviewed	p.I479	0.968	92	0%	60	40%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35062231	35062231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007126.3	-1	reviewed	p.A310T	1.000	181	0%	120	41.7%	-	-	benign(0.207)	deleterious(0)	neutral(0.465)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
FANCG	2189	genome.wustl.edu	37	9	35074161	35074161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004629.1	-1	reviewed	p.R605C	0.002	82	0%	121	9.9%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
FAM214B	80256	genome.wustl.edu	37	9	35105706	35105706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025182.2	-1	predicted	p.R479H	1.000	64	0%	118	44.1%	-	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
FAM214B	80256	genome.wustl.edu	37	9	35107795	35107795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025182.2	-1	predicted	p.D159E	1.000	13	0%	47	23.4%	-	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148725	35148725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342891.1	-1	model	p.V153F	0.975	161	0%	70	31.4%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
UNC13B	10497	genome.wustl.edu	37	9	35381182	35381182	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006377.3	+1	reviewed	p.P738	0.123	110	0%	74	39.2%	-	-	-	-	-	NULL
UNC13B	10497	genome.wustl.edu	37	9	35403481	35403481	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006377.3	+1	reviewed	p.R1459	1.000	59	0%	52	21.2%	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CA9	768	genome.wustl.edu	37	9	35679202	35679202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001216.2	+1	reviewed	p.G310*	1.000	151	0%	207	35.7%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
GBA2	57704	genome.wustl.edu	37	9	35744648	35744648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020944.2	-1	reviewed	p.D139N	1.000	107	0.9%	147	36.1%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
C9orf128	392307	genome.wustl.edu	37	9	35818911	35818911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000423537	-1	known	p.R383W	0.063	42	0%	90	26.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM8B	51754	genome.wustl.edu	37	9	35846586	35846586	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042589.1	+1	provisional	p.Y206	0.512	7	0.000	16	0.438	-	-	-	-	-	NULL
GLIPR2	152007	genome.wustl.edu	37	9	36148567	36148567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022343.2	+1	provisional	p.T49M	0.998	90	0%	120	35.8%	-	-	possibly_damaging(0.884)	tolerated(0.15)	deleterious(0.586)	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
GNE	10020	genome.wustl.edu	37	9	36222852	36222852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128227.1	-1	reviewed	p.N550D	1.000	98	0%	74	32.4%	-	-	possibly_damaging(0.752)	deleterious(0)	deleterious(0.721)	HMMPfam_ROK,superfamily_SSF53067
RNF38	152006	genome.wustl.edu	37	9	36356413	36356413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022781.4	-1	reviewed	p.L266I	1.000	322	0%	177	39.5%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
GRHPR	9380	genome.wustl.edu	37	9	37424882	37424882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012203.1	+1	reviewed	p.A42T	0.000	23	0%	38	36.8%	-	-	benign(0.236)	tolerated(0.06)	neutral(0.346)	HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
FBXO10	26267	genome.wustl.edu	37	9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012166.2	-1	validated	p.R857H	0.147	240	0%	218	37.6%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	superfamily_Pectin_lyas_like
FBXO10	26267	genome.wustl.edu	37	9	37522823	37522823	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012166.2	-1	validated	p.Y643	0.999	106	0%	85	38.8%	-	-	-	-	-	HMMSmart_PbH1,HMMSmart_CASH
FBXO10	26267	genome.wustl.edu	37	9	37537228	37537228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012166.2	-1	validated	p.R433H	1.000	25	0%	22	40.9%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like
C9orf51	647044	genome.wustl.edu	37	9	38527792	38527792	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000377689	+1	known	p.Q233	0.407	65	0%	101	34.7%	-	-	-	-	-	NULL
LOC389722	389722	genome.wustl.edu	37	9	43853592	43853592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002342910.1	+1	model	p.F618I	0.182	75	0%	59	16.9%	-	-	possibly_damaging(0.903)	tolerated(0.25)	neutral(0.395)	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
PRKACG	5568	genome.wustl.edu	37	9	71628866	71628866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002732.3	-1	reviewed	p.R48M	0.952	76	0%	110	43.6%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TJP2	9414	genome.wustl.edu	37	9	71827472	71827472	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004817.3	+1	reviewed	p.G23	1.000	158	0%	163	11.7%	-	-	-	-	-	superfamily_PDZ domain-like
APBA1	320	genome.wustl.edu	37	9	72131024	72131024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001163.3	-1	reviewed	p.P368L	1.000	23	0%	39	25.6%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
MAMDC2	256691	genome.wustl.edu	37	9	72741174	72741174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153267.4	+1	validated	p.S248*	0.993	70	0%	23	39.1%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
TRPM3	80036	genome.wustl.edu	37	9	73254044	73254044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007471.2	-1	reviewed	p.L505F	1.000	106	0%	34	38.2%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74337431	74337431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013390.2	-1	validated	p.A727T	1.000	172	1.2%	32	40.6%	-	-	probably_damaging(0.971)	tolerated(0.52)	neutral(0.421)	superfamily_Pectin lyase-like
ZFAND5	7763	genome.wustl.edu	37	9	74975616	74975616	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102420.1	-1	validated	p.N27H	1.000	142	0%	148	34.5%	-	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_zf-A20,HMMSmart_SM00259
TMC1	117531	genome.wustl.edu	37	9	75387444	75387444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138691.2	+1	reviewed	p.G286E	1.000	267	0%	157	28%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
C9orf95	54981	genome.wustl.edu	37	9	77684837	77684837	+	Silent	SNP	G	G	A	rs144657237	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017881.2	-1	validated	p.I97	0.148	131	0%	37	37.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
VPS13A	23230	genome.wustl.edu	37	9	79853068	79853068	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033305.2	+1	reviewed	p.C582	1.000	94	0%	36	33.3%	-	-	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79930294	79930294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033305.2	+1	reviewed	p.F1513C	1.000	250	0.4%	76	11.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79955109	79955109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033305.2	+1	reviewed	p.T2264A	1.000	182	0%	72	45.8%	-	-	possibly_damaging(0.798)	tolerated(0.06)	deleterious(0.623)	HMMPfam_DUF1162
VPS13A	23230	genome.wustl.edu	37	9	79986002	79986002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033305.2	+1	reviewed	p.A3005V	1.000	236	0.4%	84	38.1%	-	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
GNAQ	2776	genome.wustl.edu	37	9	80537187	80537187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002072.2	-1	provisional	p.D71Y	1.000	211	0%	51	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLE4	7091	genome.wustl.edu	37	9	82191127	82191127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000461758	+1	known	p.S96N	0.003	128	0%	122	31.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_TLE_N
TLE1	7088	genome.wustl.edu	37	9	84226713	84226713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005077.3	-1	provisional	p.A409T	1.000	21	0%	31	41.9%	-	-	possibly_damaging(0.53)	tolerated(0.26)	neutral(0.213)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84606957	84606957	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001670.2	+1	validated	p.G524	0.000	337	0%	165	37.6%	-	-	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85926820	85926820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174938.4	-1	validated	p.R252I	1.000	150	0%	160	43.1%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_FERM_C,superfamily_PH domain-like
RMI1	80010	genome.wustl.edu	37	9	86616937	86616937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024945.2	+1	validated	p.D346N	0.000	83	0%	23	39.1%	-	-	benign(0.001)	tolerated(1)	-	NULL
SLC28A3	64078	genome.wustl.edu	37	9	86928308	86928308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022127.1	-1	provisional	p.A41V	0.003	420	0%	171	36.8%	-	-	benign(0)	tolerated(1)	-	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88296182	88296182	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015239.2	-1	validated	e3+1	1.000	283	0%	123	32.5%	-	-	-	-	-	-
ZCCHC6	79670	genome.wustl.edu	37	9	88925718	88925718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024617.3	-1	validated	p.R1094I	1.000	157	0%	218	33.9%	-	-	possibly_damaging(0.907)	deleterious(0.04)	deleterious(0.710)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
C9orf170	401535	genome.wustl.edu	37	9	89771630	89771630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001709.2	+1	validated	p.S104N	0.000	111	0%	73	39.7%	-	-	unknown(0)	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90252943	90252943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004938.2	+1	reviewed	p.L124F	1.000	168	0%	111	31.5%	-	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DAPK1	1612	genome.wustl.edu	37	9	90255331	90255331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004938.2	+1	reviewed	p.D250Y	1.000	96	0%	71	40.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C9orf79	286234	genome.wustl.edu	37	9	90499927	90499927	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178828.4	+1	validated	p.Q175	0.018	36	0%	47	31.9%	-	-	-	-	-	NULL
C9orf79	286234	genome.wustl.edu	37	9	90503200	90503200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178828.4	+1	validated	p.K1266N	0.000	40	0%	62	33.9%	-	-	probably_damaging(0.983)	tolerated(0.31)	neutral(0.456)	NULL
SPTLC1	10558	genome.wustl.edu	37	9	94843211	94843211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006415.2	-1	reviewed	p.E99*	0.997	207	0%	68	48.5%	-	-	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
NOL8	55035	genome.wustl.edu	37	9	95078288	95078288	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017948.5	-1	validated	p.R207*	0.948	189	0%	75	33.3%	-	-	-	-	-	NULL
OMD	4958	genome.wustl.edu	37	9	95179486	95179486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005014.2	-1	validated	p.E119*	1.000	248	0%	82	34.1%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ECM2	1842	genome.wustl.edu	37	9	95267838	95267838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001393.2	-1	reviewed	p.Q481K	1.000	43	0%	38	39.5%	-	-	possibly_damaging(0.946)	tolerated(0.48)	neutral(0.401)	superfamily_SSF52058
ECM2	1842	genome.wustl.edu	37	9	95272235	95272235	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001393.2	-1	reviewed	p.E418*	1.000	151	0%	77	36.4%	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
ECM2	1842	genome.wustl.edu	37	9	95277031	95277031	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001393.2	-1	reviewed	p.G312	0.000	192	0%	105	36.2%	-	-	-	-	-	superfamily_SSF52058
BICD2	23299	genome.wustl.edu	37	9	95477492	95477492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003800.1	-1	reviewed	p.T838A	0.746	8	0.000	15	0.333	-	-	benign(0)	tolerated(0.97)	-	NULL
ZNF484	83744	genome.wustl.edu	37	9	95609386	95609386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031486.1	-1	provisional	p.F561L	0.374	221	0%	131	37.4%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WNK2	65268	genome.wustl.edu	37	9	96024135	96024135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006648.3	+1	reviewed	p.A1036T	0.011	11	0%	31	29%	-	-	benign(0.01)	tolerated(0.51)	neutral(0.009)	NULL
WNK2	65268	genome.wustl.edu	37	9	96055429	96055429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000411624	+1	known	p.E1498*	1.000	12	0%	40	45%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C9orf129	445577	genome.wustl.edu	37	9	96097834	96097834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098808.1	-1	provisional	p.E63K	0.999	131	0%	233	31.8%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
PHF2	5253	genome.wustl.edu	37	9	96422512	96422512	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005392.3	+1	reviewed	p.V456	0.000	28	0%	60	28.3%	-	-	-	-	-	NULL
PHF2	5253	genome.wustl.edu	37	9	96438039	96438039	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005392.3	+1	reviewed	p.L934	0.945	31	0%	60	36.7%	-	-	-	-	-	NULL
ZNF169	169841	genome.wustl.edu	37	9	97063233	97063233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194320.2	+1	validated	p.R465C	0.982	127	0%	76	10.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM22F	54754	genome.wustl.edu	37	9	97081092	97081092	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000434357	-1	known	p.R542C	0.002	127	0%	165	26.1%	-	-	-	-	-	NULL
HIATL1	84641	genome.wustl.edu	37	9	97177499	97177499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032558.2	+1	validated	p.F56L	1.000	396	0%	217	32.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FANCC	2176	genome.wustl.edu	37	9	97864063	97864063	+	Missense_Mutation	SNP	G	G	A	rs185822330	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000136.2	-1	reviewed	p.R535C	0.045	83	0%	172	34.3%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98242736	98242736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000264.3	-1	reviewed	p.R294H	1.000	140	0%	99	34.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Patched
C9orf102	375748	genome.wustl.edu	37	9	98775222	98775222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000407474	+1	known	p.L445I	0.283	48	0%	34	35.3%	-	-	possibly_damaging(0.923)	tolerated(0.37)	neutral(0.392)	NULL
CTSL2	1515	genome.wustl.edu	37	9	99799668	99799668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001333.2	-1	reviewed	p.F88L	1.000	190	0%	255	36.9%	-	-	benign(0.193)	deleterious(0.01)	neutral(0.424)	HMMPfam_Inhibitor_I29,superfamily_SSF54001
C9orf174	100499483	genome.wustl.edu	37	9	100122377	100122377	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020893.1	+1	predicted	p.V1174	0.012	75	0%	79	38%	-	-	-	-	-	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692686	100692686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018437.3	-1	validated	p.E331K	0.158	451	0.2%	364	32.7%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
ANP32B	10541	genome.wustl.edu	37	9	100773572	100773572	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006401.2	+1	validated	p.D179	0.049	568	0%	248	35.9%	-	-	-	-	-	NULL
GABBR2	9568	genome.wustl.edu	37	9	101125026	101125026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005458.7	-1	reviewed	p.R622*	0.998	28	0%	23	34.8%	-	-	-	-	-	HMMPfam_7tm_3
GABBR2	9568	genome.wustl.edu	37	9	101125027	101125027	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005458.7	-1	reviewed	p.L621	1.000	29	0%	25	20%	-	-	-	-	-	HMMPfam_7tm_3
GABBR2	9568	genome.wustl.edu	37	9	101156534	101156534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005458.7	-1	reviewed	p.S434I	1.000	118	0%	79	36.7%	-	-	benign(0.045)	deleterious(0)	neutral(0.447)	superfamily_SSF53822
ANKS6	203286	genome.wustl.edu	37	9	101552522	101552522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173551.3	-1	provisional	p.Q242H	1.000	23	0%	59	44.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KRT8P11	347265	genome.wustl.edu	37	9	102068638	102068638	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409686	+1	known	p.E415	1.000	17	0%	28	39.3%	-	-	-	-	-	HMMPfam_Filament
NR4A3	8013	genome.wustl.edu	37	9	102607063	102607063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173200.1	+1	reviewed	p.K474E	0.997	135	0%	50	34%	-	-	possibly_damaging(0.558)	tolerated(0.53)	neutral(0.198)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
INVS	27130	genome.wustl.edu	37	9	103002390	103002390	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014425.2	+1	reviewed	p.R222*	0.999	111	0%	36	30.6%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TEX10	54881	genome.wustl.edu	37	9	103088718	103088718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017746.3	-1	validated	p.Q615H	1.000	70	0%	36	44.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LPPR1	54886	genome.wustl.edu	37	9	104079657	104079657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017753.2	+1	reviewed	p.V275A	1.000	85	0%	33	48.5%	-	-	probably_damaging(1)	tolerated(0.58)	deleterious(0.505)	HMMPfam_PAP2
ZNF189	7743	genome.wustl.edu	37	9	104171570	104171570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003452.2	+1	validated	p.T507I	1.000	155	0%	55	12.7%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_C2H2 and C2HC zinc fingers
ALDOB	229	genome.wustl.edu	37	9	104187224	104187224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000035.3	-1	reviewed	p.F300L	1.000	75	0%	26	61.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycolytic,superfamily_Aldolase
C9orf125	84302	genome.wustl.edu	37	9	104239111	104239111	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032342.1	-1	provisional	p.G88	0.048	37	0%	49	34.7%	-	-	-	-	-	NULL
C9orf125	84302	genome.wustl.edu	37	9	104239215	104239215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032342.1	-1	provisional	p.R54C	0.997	48	0%	46	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP3R2	5535	genome.wustl.edu	37	9	104356907	104356907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_147180.2	-1	provisional	p.Y102	1.000	91	0%	108	37%	-	-	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
CYLC2	1539	genome.wustl.edu	37	9	105767344	105767344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001340.3	+1	reviewed	p.G144D	0.000	170	0%	100	36%	-	-	unknown(0)	tolerated(0.74)	-	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767357	105767357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001340.3	+1	reviewed	p.E148D	0.000	172	0%	110	39.1%	-	-	unknown(0)	tolerated(0.53)	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107548608	107548608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005502.2	-1	reviewed	p.C2124*	0.995	117	0%	48	31.2%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA1	19	genome.wustl.edu	37	9	107576417	107576417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005502.2	-1	reviewed	p.D1295Y	1.000	45	0%	33	39.4%	-	-	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109689356	109689356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021224.4	+1	validated	p.E1055K	1.000	186	0%	167	35.3%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109734437	109734437	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427098	+1	known	p.R95*	1.000	114	0%	40	45%	-	-	-	-	-	HMMSmart_SM00355
FAM206A	54942	genome.wustl.edu	37	9	111696786	111696786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017832.3	+1	validated	p.A7V	0.001	14	0%	16	50%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
TMEM245	23731	genome.wustl.edu	37	9	111853259	111853259	+	Missense_Mutation	SNP	C	C	T	rs191792154	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032012.3	-1	validated	p.V365I	0.000	164	0%	93	35.5%	-	-	benign(0)	tolerated(1)	-	NULL
PTPN3	5774	genome.wustl.edu	37	9	112144049	112144049	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002829.3	-1	reviewed	p.T849	0.097	145	0%	105	30.5%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799
SVEP1	79987	genome.wustl.edu	37	9	113141793	113141793	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153366.3	-1	validated	p.I3414	0.998	91	0%	37	37.8%	-	-	-	-	-	superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113166767	113166767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153366.3	-1	validated	p.W3169L	1.000	159	0%	58	25.9%	-	-	probably_damaging(0.99)	tolerated(0.2)	deleterious(0.490)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
MUSK	4593	genome.wustl.edu	37	9	113510077	113510077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005592.3	+1	reviewed	p.A304T	1.000	72	0%	22	50%	-	-	benign(0.321)	deleterious(0.04)	neutral(0.450)	superfamily_Immunoglobulin
MUSK	4593	genome.wustl.edu	37	9	113563105	113563105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005592.3	+1	reviewed	p.R816Q	1.000	56	0%	25	32%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HSDL2	84263	genome.wustl.edu	37	9	115171288	115171288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032303.3	+1	provisional	p.G128C	1.000	120	0%	40	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
KIAA1958	158405	genome.wustl.edu	37	9	115422225	115422225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133465.2	+1	predicted	p.R676H	0.780	73	0%	98	33.7%	-	-	benign(0.295)	tolerated(0.19)	neutral(0.141)	NULL
SLC46A2	57864	genome.wustl.edu	37	9	115648856	115648856	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033051.3	-1	validated	p.T418	0.001	94	0%	96	45.8%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZFP37	7539	genome.wustl.edu	37	9	115805456	115805456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003408.1	-1	provisional	p.R481I	0.998	196	0%	32	50%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF618	114991	genome.wustl.edu	37	9	116811336	116811336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133374.2	+1	validated	p.G492D	0.995	18	0%	30	36.7%	-	-	benign(0.154)	tolerated(0.76)	neutral(0.014)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116811400	116811400	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133374.2	+1	validated	p.F513	0.905	21	0%	38	34.2%	-	-	-	-	-	NULL
COL27A1	85301	genome.wustl.edu	37	9	116930723	116930723	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032888.2	+1	validated	p.T296	0.000	32	0%	94	41.5%	-	-	-	-	-	NULL
ORM1	5004	genome.wustl.edu	37	9	117086367	117086367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000607.2	+1	reviewed	p.Y109	0.000	114	0%	142	33.1%	-	-	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
AKNA	80709	genome.wustl.edu	37	9	117121926	117121926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030767.4	-1	validated	p.L814I	0.000	68	0%	78	43.6%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
TNC	3371	genome.wustl.edu	37	9	117808756	117808756	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002160.2	-1	validated	p.Y1686	0.971	171	0%	57	31.6%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117844175	117844175	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002160.2	-1	validated	p.S760	0.940	133	0%	110	36.4%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAPPA	5069	genome.wustl.edu	37	9	119109324	119109324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002581.3	+1	reviewed	p.V1267A	1.000	66	0%	40	42.5%	-	-	benign(0.117)	deleterious(0.02)	neutral(0.393)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119115112	119115112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002581.3	+1	reviewed	p.E1364D	1.000	83	0%	32	28.1%	-	-	benign(0.009)	tolerated(0.64)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
ASTN2	23245	genome.wustl.edu	37	9	119187882	119187882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198188.2	-1	reviewed	p.V392G	1.000	50	0%	25	40%	-	-	possibly_damaging(0.681)	-	-	NULL
TRIM32	22954	genome.wustl.edu	37	9	119460073	119460073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099679.1	+1	reviewed	p.L18I	1.000	56	0%	31	32.3%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_SSF57850
ASTN2	23245	genome.wustl.edu	37	9	119568048	119568048	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198187.3	-1	reviewed	p.L753	1.000	171	0%	46	10.9%	-	-	-	-	-	superfamily_EGF/Laminin
DBC1	1620	genome.wustl.edu	37	9	121930340	121930340	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014618.2	-1	validated	p.C436	0.017	39	0%	55	38.2%	-	-	-	-	-	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123177384	123177384	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018249.4	-1	reviewed	p.E1411*	1.000	206	0%	131	20.6%	-	-	-	-	-	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123253682	123253682	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018249.4	-1	reviewed	p.K462T	0.101	280	0%	176	13.6%	-	-	benign(0.03)	tolerated(0.05)	neutral(0.347)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123291021	123291021	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018249.4	-1	reviewed	e9+1	1.000	207	0%	68	42.6%	-	-	-	-	-	-
FBXW2	26190	genome.wustl.edu	37	9	123526948	123526948	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012164.3	-1	reviewed	p.G418	1.000	98	0%	66	39.4%	-	-	-	-	-	superfamily_WD40 repeat-like
PSMD5	5711	genome.wustl.edu	37	9	123589149	123589149	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005047.2	-1	reviewed	p.Y236	0.261	99	0%	38	34.2%	-	-	-	-	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
TRAF1	7185	genome.wustl.edu	37	9	123667354	123667354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005658.3	-1	reviewed	p.A399T	0.989	68	0%	95	37.9%	-	-	benign(0.099)	tolerated(0.57)	neutral(0.013)	HMMPfam_MATH,superfamily_TRAF domain-like
CNTRL	11064	genome.wustl.edu	37	9	123936007	123936007	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007018.4	+1	reviewed	p.R2247*	0.915	94	0%	29	44.8%	-	-	-	-	-	NULL
CNTRL	11064	genome.wustl.edu	37	9	123937435	123937435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007018.4	+1	reviewed	p.A2296V	0.000	113	0.9%	42	33.3%	-	-	benign(0.079)	tolerated(0.07)	neutral(0.325)	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124534910	124534910	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032552.2	+1	validated	p.P673	1.000	19	0%	48	37.5%	-	-	-	-	-	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124538622	124538622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032552.2	+1	validated	p.R1061Q	1.000	23	0%	66	18.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NDUFA8	4702	genome.wustl.edu	37	9	124910470	124910470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014222.2	-1	reviewed	p.R101H	1.000	88	0%	52	42.3%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_CHCH
LHX6	26468	genome.wustl.edu	37	9	124988738	124988738	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014368.3	-1	reviewed	p.C126	1.000	20	0%	16	43.8%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
PTGS1	5742	genome.wustl.edu	37	9	125141101	125141101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000962.2	+1	reviewed	p.D134Y	1.000	217	0%	221	34.4%	-	-	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	superfamily_Heme-dependent peroxidases
PTGS1	5742	genome.wustl.edu	37	9	125145803	125145803	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000962.2	+1	reviewed	p.M260L	0.342	28	0%	25	36%	-	-	benign(0.01)	tolerated(0.25)	neutral(0.037)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
OR1L8	138881	genome.wustl.edu	37	9	125330207	125330207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004454.1	-1	provisional	p.P184S	0.000	129	0%	73	28.8%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L8	138881	genome.wustl.edu	37	9	125330561	125330561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004454.1	-1	provisional	p.F66V	0.011	168	0%	57	42.1%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L1	26737	genome.wustl.edu	37	9	125424450	125424450	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005236.3	+1	validated	p.P202	0.000	305	0%	150	28%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1L3	26735	genome.wustl.edu	37	9	125438072	125438072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005234.1	+1	provisional	p.L222F	0.000	196	0%	65	32.3%	-	-	benign(0.034)	tolerated(0.5)	neutral(0.012)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L4	254973	genome.wustl.edu	37	9	125486652	125486652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005235.1	+1	provisional	p.C128*	1.000	166	0%	68	30.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5C1	392391	genome.wustl.edu	37	9	125551760	125551760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001923.1	+1	provisional	p.C183	0.051	80	0%	78	33.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5C1	392391	genome.wustl.edu	37	9	125551873	125551873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001923.1	+1	provisional	p.S221Y	1.000	83	0%	48	50%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RC3H2	54542	genome.wustl.edu	37	9	125611951	125611951	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100588.1	-1	validated	p.N1177	0.868	121	0%	167	38.3%	-	-	-	-	-	NULL
RC3H2	54542	genome.wustl.edu	37	9	125612056	125612056	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100588.1	-1	validated	p.Q1142	1.000	103	0%	180	20.6%	-	-	-	-	-	NULL
RC3H2	54542	genome.wustl.edu	37	9	125613503	125613503	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454740	-1	known	p.S138Y	0.995	150	0%	271	14%	-	-	-	-	-	NULL
RC3H2	54542	genome.wustl.edu	37	9	125621359	125621359	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100588.1	-1	validated	p.T624	1.000	69	0%	69	27.5%	-	-	-	-	-	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681608	125681608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020924.2	-1	provisional	p.Q202H	1.000	197	0%	136	45.6%	-	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125752436	125752436	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012197.3	+1	validated	p.I289	1.000	109	0%	51	37.3%	-	-	-	-	-	NULL
STRBP	55342	genome.wustl.edu	37	9	125941475	125941475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018387.4	-1	validated	p.R12H	1.000	169	0%	48	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRB2	286204	genome.wustl.edu	37	9	126133830	126133830	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173689.5	+1	validated	p.A803	0.041	14	0%	26	34.6%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
NEK6	10783	genome.wustl.edu	37	9	127055283	127055283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145001.2	+1	reviewed	p.R22W	0.000	49	0%	84	31%	-	-	unknown(0)	deleterious(0.03)	-	NULL
WDR38	401551	genome.wustl.edu	37	9	127616516	127616516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001045476.1	+1	provisional	p.Q34H	0.494	102	0%	212	33.5%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR38	401551	genome.wustl.edu	37	9	127616547	127616547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001045476.1	+1	provisional	p.V45M	0.285	78	0%	181	32.6%	-	-	possibly_damaging(0.849)	deleterious(0.02)	deleterious(0.709)	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
GOLGA1	2800	genome.wustl.edu	37	9	127644154	127644154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002077.3	-1	reviewed	p.T682M	0.989	183	0%	187	40.1%	-	-	benign(0.062)	tolerated(0.08)	neutral(0.304)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128064656	128064656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015635.2	+1	validated	p.L194I	1.000	167	0%	88	46.6%	-	-	benign(0.091)	tolerated(0.19)	neutral(0.056)	HMMPfam_RasGAP,superfamily_Rho_GAP
GAPVD1	26130	genome.wustl.edu	37	9	128117027	128117027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015635.2	+1	validated	p.R1249W	1.000	136	0%	54	40.7%	-	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	superfamily_SSF109993
MAPKAP1	79109	genome.wustl.edu	37	9	128434764	128434764	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006617.1	-1	reviewed	p.V30	0.999	115	0%	53	32.1%	-	-	-	-	-	HMMPfam_SIN1
FAM125B	89853	genome.wustl.edu	37	9	129246302	129246302	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033446.1	+1	validated	p.I288	0.997	74	0%	109	34.9%	-	-	-	-	-	HMMPfam_DUF2464
ZBTB34	403341	genome.wustl.edu	37	9	129642107	129642107	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099270.1	+1	validated	p.V139	0.000	34	0%	46	34.8%	-	-	-	-	-	NULL
FAM129B	64855	genome.wustl.edu	37	9	130293985	130293985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022833.2	-1	validated	p.S43N	1.000	36	0%	61	39.3%	-	-	possibly_damaging(0.749)	tolerated(1)	neutral(0.275)	NULL
C9orf117	286207	genome.wustl.edu	37	9	130472932	130472932	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012502.2	+1	predicted	p.T162	0.065	115	0%	201	33.8%	-	-	-	-	-	NULL
TTC16	158248	genome.wustl.edu	37	9	130493230	130493230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144965.1	+1	provisional	p.T723I	0.000	56	0%	146	32.9%	-	-	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
FPGS	2356	genome.wustl.edu	37	9	130575610	130575610	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004957.4	+1	reviewed	p.S497	0.000	22	0%	49	30.6%	-	-	-	-	-	NULL
ST6GALNAC6	30815	genome.wustl.edu	37	9	130648957	130648957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013443.3	-1	provisional	p.R308H	1.000	262	0%	335	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
ST6GALNAC4	27090	genome.wustl.edu	37	9	130674658	130674658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175039.3	-1	reviewed	p.R167H	0.990	18	0%	47	31.9%	-	-	probably_damaging(0.993)	tolerated(0.14)	deleterious(0.700)	HMMPfam_Glyco_transf_29
ST6GALNAC4	27090	genome.wustl.edu	37	9	130674945	130674945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175039.3	-1	reviewed	p.E71D	0.000	9	0.000	18	0.389	-	-	benign(0.146)	tolerated(0.62)	neutral(0.017)	HMMPfam_Glyco_transf_29
SLC25A25	114789	genome.wustl.edu	37	9	130860974	130860974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052901.2	+1	validated	p.Q43H	1.000	70	0%	106	39.6%	-	-	possibly_damaging(0.476)	tolerated(0.32)	neutral(0.181)	superfamily_EF-hand
SLC25A25	114789	genome.wustl.edu	37	9	130864661	130864661	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006641.1	+1	validated	p.N163	0.774	53	0%	98	35.7%	-	-	-	-	-	HMMSmart_EFh,superfamily_SSF47473
SLC27A4	10999	genome.wustl.edu	37	9	131107689	131107689	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005094.3	+1	reviewed	p.F139	0.591	22	0%	32	15.6%	-	-	-	-	-	HMMPfam_AMP-binding,PatternScan_LIPOCALIN,superfamily_Acetyl-CoA synthetase-like
CERCAM	51148	genome.wustl.edu	37	9	131185155	131185155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016174.4	+1	validated	p.T69M	1.000	94	0%	184	38%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
CERCAM	51148	genome.wustl.edu	37	9	131190611	131190611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016174.4	+1	validated	p.R266H	0.975	65	0%	113	35.4%	-	-	benign(0.026)	tolerated(0.63)	neutral(0.005)	NULL
ODF2	4957	genome.wustl.edu	37	9	131233638	131233638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002540.3	+1	reviewed	p.R134W	1.000	103	0%	90	30%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ODF2	4957	genome.wustl.edu	37	9	131262456	131262456	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002540.3	+1	reviewed	p.Y780	0.931	119	0%	152	40.1%	-	-	-	-	-	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131339176	131339176	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130438.1	+1	validated	p.G242	0.001	143	0%	76	35.5%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131388736	131388736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130438.1	+1	validated	p.E2116*	1.000	65	0%	83	36.1%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SET	6418	genome.wustl.edu	37	9	131454161	131454161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122821.1	+1	validated	p.E65D	1.000	34	0%	75	28%	-	-	possibly_damaging(0.791)	tolerated(0.11)	deleterious(0.568)	HMMPfam_NAP
TBC1D13	54662	genome.wustl.edu	37	9	131566239	131566239	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018201.3	+1	validated	p.H253	0.967	38	0%	74	16.2%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
LRRC8A	56262	genome.wustl.edu	37	9	131670651	131670651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127244.1	+1	reviewed	p.R403Q	1.000	44	0%	59	33.9%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
NUP188	23511	genome.wustl.edu	37	9	131747181	131747181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015354.1	+1	validated	p.A655V	1.000	238	0%	162	38.9%	-	-	possibly_damaging(0.538)	deleterious(0.04)	deleterious(0.531)	HMMPfam_Nup188
NUP188	23511	genome.wustl.edu	37	9	131750451	131750451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015354.1	+1	validated	p.A840V	1.000	156	0%	101	44.6%	-	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_Nup188
SH3GLB2	56904	genome.wustl.edu	37	9	131774537	131774537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020145.2	-1	provisional	p.I201S	1.000	48	2.1%	59	30.5%	-	-	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	HMMPfam_BAR,HMMSmart_SM00721
CRAT	1384	genome.wustl.edu	37	9	131865330	131865330	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000755.3	-1	reviewed	p.L142	0.986	121	0%	214	42.5%	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
PPP2R4	5524	genome.wustl.edu	37	9	131893878	131893878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178001.1	+1	reviewed	p.K175N	1.000	94	0%	96	34.4%	-	-	benign(0.006)	tolerated(0.61)	neutral(0.004)	HMMPfam_PTPA
PTGES	9536	genome.wustl.edu	37	9	132501984	132501984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004878.4	-1	reviewed	p.R122Q	0.313	41	0%	77	33.8%	-	-	benign(0.033)	tolerated(0.11)	neutral(0.273)	HMMPfam_MAPEG
C9orf78	51759	genome.wustl.edu	37	9	132597419	132597419	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016520.2	-1	validated	p.R28	1.000	43	0%	102	36.3%	-	-	-	-	-	NULL
USP20	10868	genome.wustl.edu	37	9	132632094	132632094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008563.3	+1	validated	p.W512*	1.000	15	0%	36	38.9%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP20	10868	genome.wustl.edu	37	9	132636908	132636908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008563.3	+1	validated	p.K598N	0.999	46	0%	81	46.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
USP20	10868	genome.wustl.edu	37	9	132641862	132641862	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008563.3	+1	validated	p.G841	0.998	20	0%	49	36.7%	-	-	-	-	-	HMMSmart_DUSP
ENSG00000249728	0	genome.wustl.edu	37	9	133346414	133346414	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000503205	-1	novel	NULL	0.000	50	0%	85	45.9%	-	-	-	-	-	-
ASS1	445	genome.wustl.edu	37	9	133370262	133370262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000050.4	+1	reviewed	p.H327Y	1.000	297	0%	335	38.2%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Arginosuc_synth,superfamily_Argininosuccinate synthetase C-terminal domain
FUBP3	8939	genome.wustl.edu	37	9	133501796	133501796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003934.1	+1	validated	p.R341C	1.000	45	0%	52	34.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ABL1	25	genome.wustl.edu	37	9	133748350	133748350	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007313.2	+1	reviewed	p.A356	0.144	46	0%	73	42.5%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ABL1	25	genome.wustl.edu	37	9	133750276	133750276	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007313.2	+1	reviewed	p.C388	1.000	97	0%	118	32.2%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
ABL1	25	genome.wustl.edu	37	9	133760509	133760509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007313.2	+1	reviewed	p.D963	0.000	22	0%	29	24.1%	-	-	-	-	-	NULL
LAMC3	10319	genome.wustl.edu	37	9	133948186	133948186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006059.3	+1	reviewed	p.E1127D	0.998	27	0%	48	12.5%	-	-	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
LAMC3	10319	genome.wustl.edu	37	9	133948215	133948215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006059.3	+1	reviewed	p.A1137V	0.000	23	0%	59	16.9%	-	-	benign(0.012)	tolerated(0.15)	neutral(0.241)	NULL
FAM78A	286336	genome.wustl.edu	37	9	134151290	134151290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033387.3	-1	validated	p.A93T	1.000	24	0%	54	37%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
PPAPDC3	84814	genome.wustl.edu	37	9	134183412	134183412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032728.3	+1	validated	p.D185G	1.000	29	0%	43	44.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
PRRC2B	84726	genome.wustl.edu	37	9	134312052	134312052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013318.3	+1	validated	p.P113	1.000	38	0%	51	29.4%	-	-	-	-	-	HMMPfam_BAT2_N
PRRC2B	84726	genome.wustl.edu	37	9	134351112	134351112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013318.3	+1	validated	p.R1199Q	1.000	16	0%	44	45.5%	-	-	probably_damaging(0.994)	tolerated(0.38)	deleterious(0.470)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134351309	134351309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013318.3	+1	validated	p.A1265T	0.000	37	0%	85	36.5%	-	-	benign(0)	tolerated(1)	-	NULL
UCK1	83549	genome.wustl.edu	37	9	134404932	134404932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031432.2	-1	validated	p.N103S	0.996	218	0%	349	35.8%	-	-	benign(0.003)	tolerated(0.27)	neutral(0.034)	HMMPfam_PRK,superfamily_SSF52540
RAPGEF1	2889	genome.wustl.edu	37	9	134497312	134497312	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000419442	-1	known	p.T34M	0.991	103	0%	114	31.6%	-	-	-	-	-	NULL
RAPGEF1	2889	genome.wustl.edu	37	9	134514179	134514179	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198679.1	-1	reviewed	e5-1	1.000	151	0%	95	37.9%	-	-	-	-	-	-
MED27	9442	genome.wustl.edu	37	9	134769340	134769340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004269.2	-1	reviewed	p.R205W	1.000	103	0%	62	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED27	9442	genome.wustl.edu	37	9	134952832	134952832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004269.2	-1	reviewed	p.N115K	1.000	212	0%	129	35.7%	-	-	possibly_damaging(0.497)	deleterious(0.01)	deleterious(0.572)	NULL
SETX	23064	genome.wustl.edu	37	9	135139943	135139943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015046.5	-1	reviewed	p.G2573C	0.003	72	0%	60	43.3%	-	-	benign(0.385)	deleterious(0)	deleterious(0.568)	NULL
TTF1	7270	genome.wustl.edu	37	9	135271873	135271873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007344.2	-1	validated	p.K601N	0.042	219	0%	165	35.8%	-	-	probably_damaging(0.959)	tolerated(0.14)	deleterious(0.652)	NULL
DDX31	64794	genome.wustl.edu	37	9	135521417	135521417	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022779.7	-1	reviewed	p.C520	0.997	45	0%	33	33.3%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GTF3C5	9328	genome.wustl.edu	37	9	135917498	135917498	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122823.1	+1	validated	p.L60	0.998	42	0%	56	33.9%	-	-	-	-	-	HMMPfam_Tau95
GTF3C5	9328	genome.wustl.edu	37	9	135919195	135919195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122823.1	+1	validated	p.L152I	1.000	40	0%	62	37.1%	-	-	benign(0.149)	tolerated(0.35)	neutral(0.034)	HMMPfam_Tau95
MED22	6837	genome.wustl.edu	37	9	136213479	136213479	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133640.3	-1	reviewed	p.T13	0.179	122	0%	241	40.2%	-	-	-	-	-	HMMPfam_SURF5
ADAMTS13	11093	genome.wustl.edu	37	9	136291166	136291166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139025.3	+1	reviewed	p.V175I	1.000	56	0%	124	33.9%	-	-	benign(0.204)	tolerated(0.69)	neutral(0.021)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS13	11093	genome.wustl.edu	37	9	136295154	136295154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139025.3	+1	reviewed	p.A307V	0.251	5	0.000	10	0.500	-	-	benign(0.216)	tolerated(0.24)	neutral(0.058)	HMMSmart_SM00608
ADAMTS13	11093	genome.wustl.edu	37	9	136303392	136303392	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139025.3	+1	reviewed	p.D537	1.000	131	0%	224	35.3%	-	-	-	-	-	NULL
SARDH	1757	genome.wustl.edu	37	9	136536807	136536807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134707.1	-1	reviewed	p.R726W	0.998	10	0%	27	44.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCV_T,superfamily_SSF103025
SARDH	1757	genome.wustl.edu	37	9	136582455	136582455	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134707.1	-1	reviewed	p.C381	0.993	51	0%	95	35.8%	-	-	-	-	-	HMMPfam_DAO,superfamily_SSF51905,superfamily_SSF54373
BRD3	8019	genome.wustl.edu	37	9	136907017	136907017	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007371.3	-1	reviewed	p.A424	0.002	14	0%	44	29.5%	-	-	-	-	-	superfamily_Bromodomain
BRD3	8019	genome.wustl.edu	37	9	136913310	136913310	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007371.3	-1	reviewed	p.H327	0.996	35	0%	77	35.1%	-	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
COL5A1	1289	genome.wustl.edu	37	9	137690276	137690276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000093.3	+1	reviewed	p.L974P	1.000	105	0%	159	36.5%	-	-	unknown(0)	tolerated(0.12)	-	HMMPfam_Collagen
FCN1	2219	genome.wustl.edu	37	9	137801885	137801885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002003.3	-1	reviewed	p.S247F	0.975	155	0%	130	36.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
PPP1R26	9858	genome.wustl.edu	37	9	138376538	138376538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014811.3	+1	validated	p.R61Q	0.015	10	0%	40	37.5%	-	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
SOHLH1	402381	genome.wustl.edu	37	9	138585661	138585661	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101677.1	-1	validated	e8-1	1.000	13	0%	21	52.4%	-	-	-	-	-	-
KCNT1	57582	genome.wustl.edu	37	9	138651627	138651627	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020822.2	+1	validated	p.D319	0.992	50	0%	109	33%	-	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
KCNT1	57582	genome.wustl.edu	37	9	138656989	138656989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020822.2	+1	validated	p.I383T	1.000	68	0%	174	37.4%	-	-	benign(0.007)	tolerated(0.29)	neutral(0.029)	superfamily_SSF81324
KCNT1	57582	genome.wustl.edu	37	9	138657502	138657502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020822.2	+1	validated	p.E411D	1.000	18	0%	32	25%	-	-	benign(0.338)	tolerated(0.07)	neutral(0.425)	NULL
KCNT1	57582	genome.wustl.edu	37	9	138662745	138662745	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020822.2	+1	validated	p.K604	1.000	34	0%	84	40.5%	-	-	-	-	-	superfamily_NAD(P)-bd
CAMSAP1	157922	genome.wustl.edu	37	9	138714256	138714256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015447.3	-1	validated	p.D751N	0.007	49	0%	75	40%	-	-	possibly_damaging(0.825)	tolerated(0.12)	deleterious(0.573)	NULL
UBAC1	10422	genome.wustl.edu	37	9	138825253	138825253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016172.2	-1	validated	p.R404H	1.000	78	0%	166	30.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
QSOX2	169714	genome.wustl.edu	37	9	139103123	139103123	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455222	-1	known	p.R280W	1.000	81	0%	150	40%	-	-	-	-	-	HMMPfam_Evr1_Alr,superfamily_FAD-dependent thiol oxidase
SDCCAG3	10807	genome.wustl.edu	37	9	139299112	139299112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039707.1	-1	validated	p.K347E	0.989	219	0%	399	36.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139354291	139354291	+	Silent	SNP	C	C	T	rs180816729	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014866.1	-1	validated	p.P1703	0.008	79	0%	135	38.5%	-	-	-	-	-	NULL
SEC16A	9919	genome.wustl.edu	37	9	139368568	139368568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014866.1	-1	validated	p.D1167G	0.802	80	0%	96	31.2%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139396866	139396866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017617.3	-1	reviewed	p.F1748L	0.947	8	0.000	12	0.333	-	-	benign(0.03)	tolerated(0.72)	neutral(0.003)	NULL
AGPAT2	10555	genome.wustl.edu	37	9	139569207	139569207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006412.3	-1	reviewed	p.K214M	0.000	90	0%	145	35.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Glycerol-3-phosphate (1)-acyltransferase
LCN6	158062	genome.wustl.edu	37	9	139642882	139642882	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198946.2	-1	validated	p.A18	0.014	24	0%	59	23.7%	-	-	-	-	-	NULL
LCN8	138307	genome.wustl.edu	37	9	139651525	139651525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178469.3	-1	provisional	p.S40	0.000	28	0%	59	32.2%	-	-	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
LCN15	389812	genome.wustl.edu	37	9	139658233	139658233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203347.1	-1	provisional	p.A80V	0.019	32	0%	87	42.5%	-	-	benign(0.146)	tolerated(0.26)	neutral(0.046)	HMMPfam_Lipocalin,superfamily_Calycin
LOC100131193	100131193	genome.wustl.edu	37	9	139699530	139699530	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024580.1	-1	predicted	NULL	0.000	11	0%	18	27.8%	-	-	-	-	-	-
KIAA1984	84960	genome.wustl.edu	37	9	139700971	139700971	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039374.4	+1	validated	p.E375	0.759	21	0%	42	38.1%	-	-	-	-	-	NULL
FBXW5	54461	genome.wustl.edu	37	9	139835484	139835484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018998.2	-1	reviewed	p.A533T	0.985	30	0%	70	40%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXW5	54461	genome.wustl.edu	37	9	139836761	139836761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018998.2	-1	reviewed	p.R278H	0.060	23	0%	46	47.8%	-	-	possibly_damaging(0.937)	tolerated(0.13)	deleterious(0.635)	superfamily_WD40 repeat-like
C9orf142	286257	genome.wustl.edu	37	9	139888246	139888246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183241.1	+1	predicted	p.D202N	0.819	101	0%	234	36.3%	-	-	benign(0.254)	deleterious(0.01)	neutral(0.432)	NULL
ABCA2	20	genome.wustl.edu	37	9	139905188	139905188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_212533.2	-1	reviewed	p.R2050C	0.998	16	0%	26	30.8%	-	-	benign(0.016)	tolerated(0.17)	neutral(0.059)	NULL
ABCA2	20	genome.wustl.edu	37	9	139908286	139908286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_212533.2	-1	reviewed	p.I1512T	0.998	31	0%	61	49.2%	-	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
ABCA2	20	genome.wustl.edu	37	9	139911723	139911723	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000479446	-1	known	p.T176M	0.417	20	0%	43	32.6%	-	-	-	-	-	NULL
NPDC1	56654	genome.wustl.edu	37	9	139934274	139934274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015392.3	-1	validated	p.A310T	0.346	31	0%	63	34.9%	-	-	unknown(0)	tolerated(1)	-	HMMPfam_NPDC1
MAN1B1	11253	genome.wustl.edu	37	9	139996044	139996044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016219.3	+1	validated	p.D392N	1.000	46	0%	67	38.8%	-	-	possibly_damaging(0.884)	tolerated(0.12)	deleterious(0.605)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
NDOR1	27158	genome.wustl.edu	37	9	140110210	140110210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144026.1	+1	reviewed	p.A463V	1.000	17	0%	70	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_1,superfamily_SSF52343
NOXA1	10811	genome.wustl.edu	37	9	140327956	140327956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006647.1	+1	provisional	p.A321T	0.054	5	0.000	28	0.429	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277
ENTPD8	377841	genome.wustl.edu	37	9	140329457	140329457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033113.1	-1	validated	p.G466D	0.000	50	0%	124	29%	-	-	benign(0.27)	tolerated(0.34)	neutral(0.052)	NULL
ENTPD8	377841	genome.wustl.edu	37	9	140330529	140330529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033113.1	-1	validated	p.C329Y	0.994	14	0%	53	54.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
NELF	26012	genome.wustl.edu	37	9	140348849	140348849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130969.1	-1	reviewed	p.A276T	1.000	16	0%	51	15.7%	-	-	possibly_damaging(0.824)	deleterious(0.03)	deleterious(0.676)	NULL
ARRDC1	92714	genome.wustl.edu	37	9	140508171	140508171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152285.2	+1	validated	p.V129M	0.075	111	0%	235	44.3%	-	-	possibly_damaging(0.553)	tolerated(0.12)	neutral(0.449)	HMMPfam_Arrestin_N,superfamily_Ig_E-set
ARRDC1	92714	genome.wustl.edu	37	9	140509146	140509146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152285.2	+1	validated	p.A311T	0.259	18	0%	29	17.2%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_Ig_E-set
EHMT1	79813	genome.wustl.edu	37	9	140638477	140638477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000460843	+1	known	p.A369T	0.012	47	0%	69	50.7%	-	-	benign(0.132)	deleterious(0.02)	neutral(0.394)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140652339	140652339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000460843	+1	known	p.E459D	0.023	134	0%	256	35.5%	-	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140672502	140672502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024757.4	+1	reviewed	p.R723Q	0.154	33	0%	67	28.4%	-	-	-	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140878685	140878685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000718.2	+1	validated	p.R584S	0.999	54	0%	56	26.8%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140881243	140881243	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000718.2	+1	validated	p.F637	0.971	136	0%	129	34.1%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	141015156	141015156	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000718.2	+1	validated	p.R2104	0.995	5	0.000	18	0.611	-	-	-	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	141016189	141016189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000718.2	+1	validated	p.R2253Q	1.000	17	0%	60	50%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
DIP2C	22982	genome.wustl.edu	37	10	355976	355976	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014974.2	-1	reviewed	p.H1327	0.617	118	0%	187	33.2%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	390841	390841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014974.2	-1	reviewed	p.R1121W	1.000	123	0%	198	30.3%	-	-	possibly_damaging(0.91)	deleterious(0.05)	deleterious(0.708)	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	436213	436213	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014974.2	-1	reviewed	p.A495	0.036	105	0%	150	37.3%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
LARP4B	23185	genome.wustl.edu	37	10	859132	859132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015155.1	-1	provisional	p.A651T	1.000	114	0%	206	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LARP4B	23185	genome.wustl.edu	37	10	860670	860670	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000448368	-1	known	p.V213M	0.000	39	0%	50	34%	-	-	-	-	-	NULL
ADARB2	105	genome.wustl.edu	37	10	1405809	1405809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018702.2	-1	reviewed	p.G164E	1.000	9	0.000	21	0.333	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_dsrm,HMMSmart_DSRM,superfamily_SSF54768
PFKP	5214	genome.wustl.edu	37	10	3175485	3175485	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433193	+1	known	p.T20M	0.996	78	0%	108	46.3%	-	-	-	-	-	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
PFKP	5214	genome.wustl.edu	37	10	3178680	3178680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002627.3	+1	validated	p.R755Q	1.000	33	0%	52	34.6%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_Phosphofructokinase
PITRM1	10531	genome.wustl.edu	37	10	3201139	3201139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014889.2	-1	validated	p.S368Y	1.000	130	0%	114	31.6%	-	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
KLF6	1316	genome.wustl.edu	37	10	3823800	3823800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000469435	-1	known	p.A237T	0.000	7	0.000	30	0.367	-	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
TUBAL3	79861	genome.wustl.edu	37	10	5442840	5442840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024803.2	-1	validated	p.A72S	0.999	125	0%	64	43.8%	-	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
NET1	10276	genome.wustl.edu	37	10	5496964	5496964	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001047160.1	+1	validated	p.S360	0.390	58	0%	31	38.7%	-	-	-	-	-	superfamily_DBL homology domain (DH-domain)
IL15RA	3601	genome.wustl.edu	37	10	6008166	6008166	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429135	-1	known	p.A69V	0.014	68	0%	70	15.7%	-	-	-	-	-	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
RBM17	84991	genome.wustl.edu	37	10	6143329	6143329	+	Silent	SNP	G	G	A	rs145617186	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145547.1	+1	reviewed	p.P73	0.004	51	0%	31	35.5%	-	-	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7214023	7214023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029880.1	-1	provisional	p.A750V	0.284	13	0%	41	39%	-	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7214537	7214537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029880.1	-1	provisional	p.R691W	0.997	60	0%	112	30.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7318935	7318935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029880.1	-1	provisional	p.K263N	1.000	120	0%	103	39.8%	-	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	superfamily_Tudor/PWWP/MBT
ITIH2	3698	genome.wustl.edu	37	10	7763721	7763721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002216.2	+1	validated	p.E283A	0.995	122	0%	116	31.9%	-	-	benign(0.003)	tolerated(0.69)	neutral(0.002)	NULL
ITIH2	3698	genome.wustl.edu	37	10	7774324	7774324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002216.2	+1	validated	p.E557D	0.985	64	0%	69	33.3%	-	-	benign(0.005)	tolerated(0.4)	neutral(0.016)	NULL
GATA3	2625	genome.wustl.edu	37	10	8100287	8100287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002295.1	+1	reviewed	p.P87	0.104	27	0%	53	43.4%	-	-	-	-	-	NULL
DHTKD1	55526	genome.wustl.edu	37	10	12149964	12149964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018706.5	+1	validated	p.D702N	1.000	72	0%	84	27.4%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
MCM10	55388	genome.wustl.edu	37	10	13222497	13222497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182751.2	+1	validated	p.I275V	1.000	222	0.5%	108	38%	-	-	benign(0.018)	tolerated(0.98)	neutral(0.001)	NULL
UCMA	221044	genome.wustl.edu	37	10	13271668	13271668	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145314.1	-1	provisional	p.E88*	0.991	279	0%	227	38.3%	-	-	-	-	-	NULL
PHYH	5264	genome.wustl.edu	37	10	13330479	13330479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006214.3	-1	reviewed	p.D187N	0.007	38	0%	48	35.4%	-	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	HMMPfam_PhyH
SEPHS1	22929	genome.wustl.edu	37	10	13378251	13378251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012247.3	-1	reviewed	p.T133A	1.000	79	0%	60	13.3%	-	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
SEPHS1	22929	genome.wustl.edu	37	10	13380772	13380772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012247.3	-1	reviewed	p.H77R	1.000	115	0%	108	32.4%	-	-	benign(0.408)	deleterious(0.02)	deleterious(0.515)	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
BEND7	222389	genome.wustl.edu	37	10	13541825	13541825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152751.2	-1	validated	p.R82H	1.000	133	0%	126	32.5%	-	-	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13701479	13701479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018027.3	-1	validated	p.R637H	1.000	18	0%	60	51.7%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13708237	13708237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018027.3	-1	validated	p.V488A	1.000	102	1%	213	33.3%	-	-	benign(0.102)	deleterious(0.04)	neutral(0.357)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13716954	13716954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018027.3	-1	validated	p.R403H	1.000	118	0%	77	46.8%	-	-	possibly_damaging(0.859)	deleterious(0.04)	deleterious(0.681)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13852840	13852840	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018027.3	-1	validated	p.Y60*	1.000	81	0%	54	37%	-	-	-	-	-	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
FAM107B	83641	genome.wustl.edu	37	10	14816465	14816465	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031453.2	-1	predicted	p.H66	0.010	100	0%	74	29.7%	-	-	-	-	-	NULL
SUV39H2	79723	genome.wustl.edu	37	10	14939434	14939434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024670.3	+1	provisional	p.R196Q	1.000	94	0%	56	37.5%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
DCLRE1C	64421	genome.wustl.edu	37	10	14961799	14961799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033855.1	-1	reviewed	p.T365M	0.000	200	0%	107	35.5%	-	-	benign(0.007)	tolerated(0.37)	neutral(0.019)	NULL
MEIG1	644890	genome.wustl.edu	37	10	15008518	15008518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080836.2	+1	validated	p.W17*	1.000	120	0%	86	34.9%	-	-	-	-	-	NULL
NMT2	9397	genome.wustl.edu	37	10	15172258	15172258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004808.2	-1	reviewed	p.S258L	1.000	65	0%	23	52.2%	-	-	benign(0.412)	deleterious(0.03)	deleterious(0.497)	HMMPfam_NMT,superfamily_Acyl-CoA N-acyltransferases (Nat)
ITGA8	8516	genome.wustl.edu	37	10	15686175	15686175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003638.1	-1	provisional	p.K418R	0.975	89	0%	57	43.9%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
PLXDC2	84898	genome.wustl.edu	37	10	20453447	20453447	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032812.7	+1	provisional	p.V278	0.995	117	0%	38	50%	-	-	-	-	-	NULL
NEBL	10529	genome.wustl.edu	37	10	21076237	21076237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006393.2	-1	reviewed	p.A921V	1.000	125	0%	42	16.7%	-	-	benign(0.056)	tolerated(1)	neutral(0.004)	NULL
NEBL	10529	genome.wustl.edu	37	10	21097515	21097515	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006393.2	-1	reviewed	p.D895	0.994	63	0%	16	37.5%	-	-	-	-	-	NULL
C10orf140	387640	genome.wustl.edu	37	10	21804314	21804314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207371.3	-1	validated	p.T813N	0.958	173	0%	366	36.1%	-	-	possibly_damaging(0.84)	tolerated(0.26)	neutral(0.356)	NULL
C10orf140	387640	genome.wustl.edu	37	10	21805083	21805083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207371.3	-1	validated	p.H557Y	1.000	48	0%	107	40.2%	-	-	possibly_damaging(0.905)	deleterious(0.03)	deleterious(0.724)	NULL
ENSG00000246935	0	genome.wustl.edu	37	10	21806809	21806809	+	RNA	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000442443	+1	novel	NULL	1.000	11	0%	16	43.8%	-	-	-	-	-	-
ARMC3	219681	genome.wustl.edu	37	10	23295822	23295822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173081.3	+1	validated	p.G581S	1.000	99	0%	47	38.3%	-	-	possibly_damaging(0.833)	tolerated(0.23)	neutral(0.359)	NULL
ARMC3	219681	genome.wustl.edu	37	10	23297838	23297838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173081.3	+1	validated	p.A675T	0.001	84	0%	42	40.5%	-	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
ARMC3	219681	genome.wustl.edu	37	10	23319648	23319648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173081.3	+1	validated	p.F723L	0.683	250	0%	63	42.9%	-	-	benign(0.001)	tolerated(1)	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832886	24832886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019590.3	+1	validated	p.D1563N	0.940	78	0%	71	11.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24889679	24889679	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020824.3	-1	validated	p.R1010*	0.946	225	0%	127	40.2%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ENKUR	219670	genome.wustl.edu	37	10	25279473	25279473	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145010.2	-1	provisional	p.D171	0.809	331	0%	164	42.7%	-	-	-	-	-	NULL
THNSL1	79896	genome.wustl.edu	37	10	25312736	25312736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024838.4	+1	validated	p.K195R	1.000	150	0%	86	31.4%	-	-	benign(0.01)	tolerated(0.22)	neutral(0.043)	HMMPfam_SKI,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR158	57512	genome.wustl.edu	37	10	25464537	25464537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020752.2	+1	validated	p.R63H	1.000	8	0.000	16	0.250	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GPR158	57512	genome.wustl.edu	37	10	25883317	25883317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020752.2	+1	validated	p.L663F	1.000	223	0%	85	34.1%	-	-	benign(0.11)	tolerated(1)	neutral(0.009)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25887619	25887619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020752.2	+1	validated	p.E1022K	1.000	55	0%	16	50%	-	-	benign(0.212)	deleterious(0.01)	neutral(0.426)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26241069	26241069	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017433.4	+1	reviewed	p.I10	0.927	79	0%	17	29.4%	-	-	-	-	-	superfamily_Kinase_like
MYO3A	53904	genome.wustl.edu	37	10	26286127	26286127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017433.4	+1	reviewed	p.D150N	1.000	107	0%	30	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO3A	53904	genome.wustl.edu	37	10	26465648	26465648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017433.4	+1	reviewed	p.E1438*	1.000	73	0%	34	44.1%	-	-	-	-	-	NULL
GAD2	2572	genome.wustl.edu	37	10	26507972	26507972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000818.2	+1	reviewed	p.D96G	1.000	113	0%	153	30.1%	-	-	benign(0.093)	deleterious(0.01)	neutral(0.413)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27324195	27324195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014915.2	-1	validated	p.L1062I	0.921	123	0%	61	23%	-	-	possibly_damaging(0.897)	deleterious(0.02)	deleterious(0.737)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27324281	27324281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014915.2	-1	validated	p.A1033V	0.471	257	0%	97	38.1%	-	-	possibly_damaging(0.561)	tolerated(0.13)	neutral(0.444)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27329036	27329036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014915.2	-1	validated	p.H745N	0.000	217	0%	118	33.9%	-	-	benign(0.427)	tolerated(0.06)	neutral(0.462)	NULL
MASTL	84930	genome.wustl.edu	37	10	27469943	27469943	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032844.3	+1	reviewed	p.P775	0.984	227	0%	96	41.7%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LOC729549	729549	genome.wustl.edu	37	10	27627824	27627824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001130590.2	-1	model	p.E137K	0.000	46	0%	15	33.3%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MPP7	143098	genome.wustl.edu	37	10	28420577	28420577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173496.3	-1	validated	p.D120G	1.000	158	0%	49	38.8%	-	-	probably_damaging(0.99)	tolerated(0.28)	deleterious(0.473)	superfamily_PDZ,HMMSmart_L27,HMMPfam_L27
SVIL	6840	genome.wustl.edu	37	10	29756772	29756772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021738.2	-1	reviewed	p.S1959N	1.000	84	0%	118	15.3%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
KIAA1462	57608	genome.wustl.edu	37	10	30316396	30316396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020848.2	-1	validated	p.P894L	0.002	40	0%	58	39.7%	-	-	benign(0.004)	tolerated(0.56)	neutral(0.006)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30728029	30728029	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005204.2	+1	reviewed	p.N54	0.860	84	0%	94	37.2%	-	-	-	-	-	NULL
LOC645954	645954	genome.wustl.edu	37	10	30989138	30989138	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_017086.3	+1	model	NULL	1.000	213	0%	151	42.4%	-	-	-	-	-	-
ZEB1	6935	genome.wustl.edu	37	10	31809358	31809358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030751.5	+1	reviewed	p.N365K	1.000	114	0%	30	30%	-	-	possibly_damaging(0.911)	tolerated(0.13)	deleterious(0.615)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31815847	31815847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030751.5	+1	reviewed	p.H1010Q	0.000	182	0%	47	10.6%	-	-	benign(0.008)	tolerated(0.33)	neutral(0.024)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32143085	32143085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018287.5	-1	provisional	p.D333A	1.000	150	0%	81	9.9%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32143119	32143119	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018287.5	-1	provisional	p.E322*	1.000	122	0%	70	28.6%	-	-	-	-	-	NULL
NRP1	8829	genome.wustl.edu	37	10	33491813	33491813	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000374823	-1	known	p.E624*	1.000	107	0%	45	55.6%	-	-	-	-	-	NULL
CUL2	8453	genome.wustl.edu	37	10	35327920	35327920	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003591.2	-1	provisional	p.R269*	0.998	306	0%	167	32.9%	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
GJD4	219770	genome.wustl.edu	37	10	35896986	35896986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153368.2	+1	validated	p.G182D	0.411	12	0%	14	35.7%	-	-	possibly_damaging(0.474)	tolerated(0.51)	neutral(0.166)	PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC
ANKRD30A	91074	genome.wustl.edu	37	10	37505221	37505221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052997.2	+1	validated	p.K938N	0.714	138	0%	26	38.5%	-	-	possibly_damaging(0.45)	tolerated(1)	neutral(0.147)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37508550	37508550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052997.2	+1	validated	p.N1248H	0.000	123	0%	33	39.4%	-	-	possibly_damaging(0.634)	deleterious(0)	deleterious(0.666)	NULL
LOC646360	646360	genome.wustl.edu	37	10	37627135	37627135	+	RNA	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078419.1	+1	model	NULL	1.000	71	0%	31	22.6%	-	-	-	-	-	-
LOC340947	340947	genome.wustl.edu	37	10	38369451	38369451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001131609.2	-1	model	p.E162*	1.000	77	0%	41	43.9%	-	-	-	-	-	HMMPfam_Paf67
LOC642424	642424	genome.wustl.edu	37	10	42680786	42680786	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001717196.2	+1	model	p.Q125	0.999	225	0%	111	21.6%	-	-	-	-	-	NULL
ZNF33B	7582	genome.wustl.edu	37	10	43088092	43088092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006955.1	-1	provisional	p.R769I	1.000	224	0%	63	42.9%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
BMS1	9790	genome.wustl.edu	37	10	43288477	43288477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014753.3	+1	reviewed	p.K325T	1.000	112	0%	54	35.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43292506	43292506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014753.3	+1	reviewed	p.E605G	0.084	68	0%	41	29.3%	-	-	possibly_damaging(0.792)	tolerated(0.44)	neutral(0.309)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RET	5979	genome.wustl.edu	37	10	43604576	43604576	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020975.4	+1	reviewed	p.G387	0.008	30	0%	74	36.5%	-	-	-	-	-	NULL
CSGALNACT2	55454	genome.wustl.edu	37	10	43650661	43650661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018590.3	+1	provisional	p.L22F	1.000	195	0%	178	12.9%	-	-	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
RASGEF1A	221002	genome.wustl.edu	37	10	43693554	43693554	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145313.2	-1	validated	p.R374	0.053	161	0%	237	38.4%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RASGEF1A	221002	genome.wustl.edu	37	10	43696192	43696192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145313.2	-1	validated	p.P202T	0.918	56	0%	84	29.8%	-	-	benign(0.025)	tolerated(0.7)	neutral(0.003)	superfamily_Ras GEF
HNRNPF	3185	genome.wustl.edu	37	10	43883006	43883006	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098204.1	-1	reviewed	p.N109	0.801	192	0%	141	14.9%	-	-	-	-	-	superfamily_RNA-binding domain RBD
HNRNPF	3185	genome.wustl.edu	37	10	43883273	43883273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098204.1	-1	reviewed	p.W20*	1.000	69	0%	74	21.6%	-	-	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF485	220992	genome.wustl.edu	37	10	44112276	44112276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145312.3	+1	validated	p.R262I	0.997	188	0%	156	33.3%	-	-	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF485	220992	genome.wustl.edu	37	10	44112612	44112612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145312.3	+1	validated	p.R374I	0.999	134	0%	127	36.2%	-	-	benign(0.195)	tolerated(0.05)	neutral(0.364)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CXCL12	6387	genome.wustl.edu	37	10	44874139	44874139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033886.2	-1	reviewed	p.C71Y	1.000	280	0%	345	40.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
RASSF4	83937	genome.wustl.edu	37	10	45478040	45478040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032023.3	+1	reviewed	p.Q70H	1.000	55	0%	83	13.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OR13A1	79290	genome.wustl.edu	37	10	45799503	45799503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004297.2	-1	validated	p.T123M	0.959	56	0%	53	39.6%	-	-	possibly_damaging(0.933)	tolerated(0.18)	neutral(0.435)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM21C	253725	genome.wustl.edu	37	10	46261206	46261206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015262.2	+1	validated	p.S606F	0.034	224	0%	145	35.2%	-	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
FAM21C	253725	genome.wustl.edu	37	10	46264959	46264959	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015262.2	+1	validated	p.E642	0.281	176	0%	113	34.5%	-	-	-	-	-	NULL
RBP3	5949	genome.wustl.edu	37	10	48388461	48388461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002900.2	-1	reviewed	p.R806H	0.011	8	0.000	14	0.429	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
GDF2	2658	genome.wustl.edu	37	10	48413860	48413860	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016204.1	-1	reviewed	p.F336	0.849	41	0%	61	34.4%	-	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
GDF10	2662	genome.wustl.edu	37	10	48428836	48428836	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004962.2	-1	reviewed	p.A350	0.001	61	0%	114	39.5%	-	-	-	-	-	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49450302	49450302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018071.3	-1	reviewed	p.A157T	0.829	35	0%	43	27.9%	-	-	probably_damaging(0.989)	tolerated(0.28)	deleterious(0.471)	HMMSmart_SM00750
FRMPD2	143162	genome.wustl.edu	37	10	49457097	49457097	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018071.3	-1	reviewed	p.G92	0.006	23	0%	30	26.7%	-	-	-	-	-	HMMSmart_SM00750
ARHGAP22	58504	genome.wustl.edu	37	10	49662202	49662202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000460425	-1	known	p.A254V	0.035	107	0%	217	35.9%	-	-	benign(0.04)	-	-	HMMSmart_SM00324
WDFY4	57705	genome.wustl.edu	37	10	49996622	49996622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020945.1	+1	validated	p.V1286F	0.290	96	0%	54	25.9%	-	-	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50015956	50015956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000312002	+1	known	p.D688N	1.000	106	0%	54	31.5%	-	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50034715	50034715	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020945.1	+1	validated	e35-1	1.000	44	2.3%	26	42.3%	-	-	-	-	-	-
C10orf71	118461	genome.wustl.edu	37	10	50530702	50530702	+	Missense_Mutation	SNP	C	C	T	rs143752860	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135196.1	+1	validated	p.R38W	1.000	58	0%	52	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C10orf71	118461	genome.wustl.edu	37	10	50532456	50532456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135196.1	+1	validated	p.E622D	0.000	40	0%	58	32.8%	-	-	benign(0.004)	tolerated(0.52)	neutral(0.009)	NULL
C10orf71	118461	genome.wustl.edu	37	10	50533904	50533904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135196.1	+1	validated	p.A1105V	0.001	16	0%	20	25%	-	-	benign(0.076)	tolerated(0.12)	neutral(0.266)	NULL
SLC18A3	6572	genome.wustl.edu	37	10	50820176	50820176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003055.2	+1	reviewed	p.P464S	1.000	17	0%	25	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
CHAT	1103	genome.wustl.edu	37	10	50833585	50833585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020549.4	+1	reviewed	p.Y273*	1.000	39	0%	52	36.5%	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CHAT	1103	genome.wustl.edu	37	10	50835761	50835761	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020549.4	+1	reviewed	p.L347	0.990	75	0%	57	24.6%	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CHAT	1103	genome.wustl.edu	37	10	50856579	50856579	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020549.4	+1	reviewed	p.C436*	0.927	37	0%	48	31.2%	-	-	-	-	-	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
CHAT	1103	genome.wustl.edu	37	10	50873023	50873023	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020549.4	+1	reviewed	p.P726	0.000	41	0%	33	48.5%	-	-	-	-	-	NULL
OGDHL	55753	genome.wustl.edu	37	10	50944199	50944199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018245.2	-1	validated	p.I927L	1.000	59	0%	76	31.6%	-	-	benign(0)	tolerated(1)	-	NULL
OGDHL	55753	genome.wustl.edu	37	10	50966468	50966468	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018245.2	-1	validated	p.F57	0.954	10	0%	22	45.5%	-	-	-	-	-	NULL
AGAP7	653268	genome.wustl.edu	37	10	51465417	51465417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077685.1	-1	provisional	p.G347R	1.000	129	0%	155	46.5%	-	-	possibly_damaging(0.829)	tolerated(0.05)	deleterious(0.660)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
AGAP6	414189	genome.wustl.edu	37	10	51768630	51768630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077665.2	+1	validated	p.R249C	1.000	104	0%	109	12.8%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
AGAP6	414189	genome.wustl.edu	37	10	51768703	51768703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077665.2	+1	validated	p.A273V	0.997	61	0%	75	36%	-	-	benign(0.277)	tolerated(0.09)	neutral(0.326)	superfamily_PH domain-like
SGMS1	259230	genome.wustl.edu	37	10	52071105	52071105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_147156.3	-1	reviewed	p.T271I	1.000	99	0%	43	41.9%	-	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
PRKG1	5592	genome.wustl.edu	37	10	52912940	52912940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006258.2	+1	validated	p.K110Q	1.000	110	0.9%	30	36.7%	-	-	benign(0.284)	tolerated(0.07)	neutral(0.406)	superfamily_cAMP-binding domain-like
CSTF2T	23283	genome.wustl.edu	37	10	53458638	53458638	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015235.2	-1	validated	p.G224	0.998	67	0%	31	35.5%	-	-	-	-	-	NULL
MBL2	4153	genome.wustl.edu	37	10	54528264	54528264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000242.2	-1	reviewed	p.T127I	0.000	37	0%	20	55%	-	-	benign(0.021)	tolerated(0.37)	neutral(0.020)	HMMSmart_SM00034
PCDH15	65217	genome.wustl.edu	37	10	55582039	55582039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142763.1	-1	reviewed	p.T1823N	0.065	360	0.3%	282	34%	-	-	unknown(0)	deleterious(0.01)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55582307	55582307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142763.1	-1	reviewed	p.E1734K	0.000	62	0%	52	42.3%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55587165	55587165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142763.1	-1	reviewed	p.G1457E	1.000	54	0%	82	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDH15	65217	genome.wustl.edu	37	10	56138640	56138640	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142763.1	-1	reviewed	p.E79*	1.000	93	0%	18	38.9%	-	-	-	-	-	HMMSmart_SM00112
CISD1	55847	genome.wustl.edu	37	10	60047334	60047334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018464.3	+1	validated	p.D84G	1.000	178	0%	71	38%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMSmart_ZnF_CDGSH,HMMPfam_zf-CDGSH
BICC1	80114	genome.wustl.edu	37	10	60461853	60461853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080512.1	+1	reviewed	p.T86M	0.994	73	0%	25	52%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PHYHIPL	84457	genome.wustl.edu	37	10	60998349	60998349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032439.3	+1	validated	p.D160E	1.000	197	0%	38	36.8%	-	-	possibly_damaging(0.942)	tolerated(0.73)	neutral(0.389)	superfamily_Fibronectin type III
ANK3	288	genome.wustl.edu	37	10	61815604	61815604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.V4293I	0.081	411	0%	110	31.8%	-	-	benign(0.03)	tolerated(0.15)	neutral(0.242)	NULL
ANK3	288	genome.wustl.edu	37	10	61828529	61828529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.S4037L	1.000	164	0%	36	33.3%	-	-	possibly_damaging(0.916)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61828561	61828561	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.S4026	0.998	156	0%	34	38.2%	-	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61832554	61832554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.I2695M	0.000	101	0%	35	48.6%	-	-	benign(0)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833657	61833657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.R2328C	1.000	107	0%	44	9.1%	-	-	probably_damaging(0.999)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61834520	61834520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.D2040G	1.000	163	0%	56	44.6%	-	-	probably_damaging(0.981)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61932136	61932136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020987.2	-1	reviewed	p.A803V	1.000	171	0%	59	49.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,superfamily_ANK
ARID5B	84159	genome.wustl.edu	37	10	63760043	63760043	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032199.2	+1	validated	p.P232	0.135	85	0%	38	34.2%	-	-	-	-	-	NULL
RTKN2	219790	genome.wustl.edu	37	10	64000949	64000949	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145307.2	-1	provisional	p.R108*	1.000	102	0%	26	26.9%	-	-	-	-	-	NULL
RTKN2	219790	genome.wustl.edu	37	10	64022544	64022544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145307.2	-1	provisional	p.R33*	1.000	114	0%	78	75.6%	-	-	-	-	-	HMMSmart_SM00742
JMJD1C	221037	genome.wustl.edu	37	10	64950739	64950739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032776.1	-1	validated	p.L2069S	1.000	386	0%	154	31.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64974679	64974679	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032776.1	-1	validated	p.P416	0.998	365	0%	152	33.6%	-	-	-	-	-	NULL
CTNNA3	29119	genome.wustl.edu	37	10	68138968	68138968	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127384.1	-1	validated	p.Y558	0.923	138	0%	38	63.2%	-	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
DNAJC12	56521	genome.wustl.edu	37	10	69571315	69571315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021800.2	-1	reviewed	p.Q88H	0.998	104	0%	67	13.4%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Chaperone J-domain
HERC4	26091	genome.wustl.edu	37	10	69682722	69682722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022079.2	-1	validated	p.A1047V	1.000	114	0%	54	31.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MYPN	84665	genome.wustl.edu	37	10	69926194	69926194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032578.2	+1	validated	p.L582M	1.000	71	0%	37	27%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
MYPN	84665	genome.wustl.edu	37	10	69926363	69926363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032578.2	+1	validated	p.K638T	0.357	38	0%	24	62.5%	-	-	benign(0.147)	tolerated(0.16)	neutral(0.072)	NULL
HNRNPH3	3189	genome.wustl.edu	37	10	70099275	70099275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012207.2	+1	reviewed	p.G201V	1.000	336	0%	208	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RUFY2	55680	genome.wustl.edu	37	10	70161389	70161389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017987.4	-1	validated	p.L130R	1.000	127	0%	167	18%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_RUN
DNA2	1763	genome.wustl.edu	37	10	70176563	70176563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080449.1	-1	provisional	p.R1092K	1.000	93	0%	97	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNA2	1763	genome.wustl.edu	37	10	70178926	70178926	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440722	-1	known	p.A266T	0.992	134	0%	126	39.7%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM14D	645203	genome.wustl.edu	37	10	70304323	70304323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_928242.3	-1	model	p.P90S	0.819	292	0%	203	14.3%	-	-	-	-	-	HMMPfam_Tmemb_14
TMEM14D	645203	genome.wustl.edu	37	10	70304547	70304547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_928242.3	-1	model	p.G15D	0.919	231	0%	193	35.8%	-	-	-	-	-	HMMPfam_Tmemb_14
TET1	80312	genome.wustl.edu	37	10	70360781	70360781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030625.2	+1	validated	p.K653T	1.000	119	0%	117	30.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA1279	26128	genome.wustl.edu	37	10	70775798	70775798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015634.3	+1	reviewed	p.P498S	0.302	71	0%	49	32.7%	-	-	possibly_damaging(0.703)	tolerated(0.06)	deleterious(0.575)	NULL
VPS26A	9559	genome.wustl.edu	37	10	70930975	70930975	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004896.3	+1	reviewed	p.R312*	1.000	86	0%	63	23.8%	-	-	-	-	-	NULL
SUPV3L1	6832	genome.wustl.edu	37	10	70956771	70956771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003171.3	+1	provisional	p.L319V	0.997	198	0%	90	37.8%	-	-	benign(0.013)	tolerated(0.67)	neutral(0.003)	superfamily_SSF52540
TSPAN15	23555	genome.wustl.edu	37	10	71266594	71266594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012339.3	+1	reviewed	p.V249M	1.000	9	0.000	24	0.458	-	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_Tetraspannin
COL13A1	1305	genome.wustl.edu	37	10	71657249	71657249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130103.1	+1	reviewed	p.P226S	0.296	48	0%	61	42.6%	-	-	benign(0)	-	-	NULL
SAR1A	56681	genome.wustl.edu	37	10	71913656	71913656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142648.1	-1	validated	p.D140Y	1.000	354	0%	272	29.8%	-	-	possibly_damaging(0.952)	tolerated(0.23)	neutral(0.437)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRF1	5551	genome.wustl.edu	37	10	72360604	72360604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083116.1	-1	reviewed	p.V19I	0.000	21	0%	28	39.3%	-	-	benign(0.016)	tolerated(0.34)	neutral(0.024)	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72520169	72520169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139155.2	+1	reviewed	p.R1081C	0.822	25	0%	46	28.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C10orf27	219793	genome.wustl.edu	37	10	72531154	72531154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152710.2	-1	validated	p.S345L	0.002	163	0%	170	36.5%	-	-	benign(0.275)	deleterious(0.01)	neutral(0.435)	NULL
UNC5B	219699	genome.wustl.edu	37	10	73045099	73045099	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170744.3	+1	validated	p.F155	1.000	19	0%	41	31.7%	-	-	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
CDH23	64072	genome.wustl.edu	37	10	73269900	73269900	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022124.5	+1	reviewed	p.V69	0.999	88	0%	102	35.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
C10orf54	64115	genome.wustl.edu	37	10	73521633	73521633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022153.1	-1	validated	p.G78V	0.018	66	0%	102	11.8%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CDH23	64072	genome.wustl.edu	37	10	73537537	73537537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022124.5	+1	reviewed	p.T1649M	0.998	43	0%	75	36%	-	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Cadherin,superfamily_Cadherin-like
SPOCK2	9806	genome.wustl.edu	37	10	73847943	73847943	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014767.2	-1	validated	p.I48	1.000	18	0%	48	41.7%	-	-	-	-	-	NULL
ANAPC16	119504	genome.wustl.edu	37	10	73983722	73983722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173473.2	+1	validated	p.S17Y	1.000	129	0%	100	24%	-	-	unknown(0)	-	-	NULL
MICU1	10367	genome.wustl.edu	37	10	74322758	74322758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006077.2	-1	validated	p.K75N	0.994	488	0%	149	25.5%	-	-	benign(0.11)	deleterious(0.04)	neutral(0.357)	NULL
ANXA7	310	genome.wustl.edu	37	10	75148118	75148118	+	Missense_Mutation	SNP	C	C	T	rs142735473	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004034.2	-1	reviewed	p.D186N	0.917	185	0%	71	40.8%	-	-	benign(0.416)	tolerated(0.19)	neutral(0.184)	superfamily_Annexin
PPP3CB	5532	genome.wustl.edu	37	10	75231343	75231343	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142353.1	-1	validated	p.Y184	1.000	112	0%	54	24.1%	-	-	-	-	-	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
USP54	159195	genome.wustl.edu	37	10	75264669	75264669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152586.3	-1	provisional	p.R1417H	1.000	121	0%	98	36.7%	-	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75413402	75413402	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114133.1	-1	validated	p.D89	0.004	25	0%	49	28.6%	-	-	-	-	-	superfamily_PDZ domain-like
AGAP5	729092	genome.wustl.edu	37	10	75435182	75435182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144000.1	-1	validated	p.M412I	0.995	79	0%	74	44.6%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA0913	23053	genome.wustl.edu	37	10	75560079	75560079	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000412198	+1	known	p.R895H	0.002	61	0%	92	40.2%	-	-	-	-	-	NULL
NDST2	8509	genome.wustl.edu	37	10	75563402	75563402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003635.3	-1	reviewed	p.A691V	1.000	88	0%	169	11.8%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
NDST2	8509	genome.wustl.edu	37	10	75563412	75563412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003635.3	-1	reviewed	p.R688W	1.000	87	1.1%	156	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
KAT6B	23522	genome.wustl.edu	37	10	76790676	76790676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012330.2	+1	validated	p.P2032S	1.000	34	0%	33	39.4%	-	-	probably_damaging(0.999)	-	-	NULL
SAMD8	142891	genome.wustl.edu	37	10	76910812	76910812	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144660.2	+1	validated	p.R176*	1.000	53	0%	52	40.4%	-	-	-	-	-	NULL
ENSG00000233745	0	genome.wustl.edu	37	10	77160787	77160787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000438638	+1	known	p.R10I	0.000	29	0%	75	40%	-	-	unknown(0)	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78729780	78729780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014797.2	-1	reviewed	p.R717Q	1.000	278	0%	99	31.3%	-	-	possibly_damaging(0.477)	tolerated(0.08)	neutral(0.458)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78832919	78832919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014797.2	-1	reviewed	p.S562N	1.000	100	0%	28	35.7%	-	-	benign(0.259)	tolerated(0.09)	neutral(0.324)	HMMPfam_BK_channel_a,superfamily_NAD(P)-binding Rossmann-fold domains
KCNMA1	3778	genome.wustl.edu	37	10	78850185	78850185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014797.2	-1	reviewed	p.V436A	1.000	172	0%	82	36.6%	-	-	possibly_damaging(0.56)	deleterious(0.01)	deleterious(0.597)	superfamily_NAD(P)-binding Rossmann-fold domains
ZMIZ1	57178	genome.wustl.edu	37	10	81050780	81050780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020338.3	+1	validated	p.S202L	0.998	37	0%	80	41.2%	-	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
FAM22B	729262	genome.wustl.edu	37	10	81463611	81463611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000429828	+1	known	p.F82L	0.000	333	0%	534	20.6%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
FAM213A	84293	genome.wustl.edu	37	10	82185630	82185630	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032333.4	+1	validated	p.A93	0.007	94	0%	101	38.6%	-	-	-	-	-	superfamily_Thiordxn-like_fd
TSPAN14	81619	genome.wustl.edu	37	10	82276062	82276062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030927.2	+1	validated	p.A242T	0.998	48	0%	83	45.8%	-	-	benign(0.129)	tolerated(0.23)	neutral(0.053)	HMMPfam_Tetraspannin
CDHR1	92211	genome.wustl.edu	37	10	85974256	85974256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033100.2	+1	reviewed	p.P820L	0.246	73	0%	106	40.6%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
LRIT2	340745	genome.wustl.edu	37	10	85984759	85984759	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017924.2	-1	validated	p.S74	0.897	65	0%	76	32.9%	-	-	-	-	-	superfamily_SSF52058
OPN4	94233	genome.wustl.edu	37	10	88419065	88419065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001030015.2	+1	validated	p.P225S	1.000	128	0%	186	39.8%	-	-	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	HMMPfam_7tm_1,superfamily_SSF81321
LDB3	11155	genome.wustl.edu	37	10	88485990	88485990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007078.2	+1	reviewed	p.D692V	1.000	96	0%	43	14%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
BMPR1A	657	genome.wustl.edu	37	10	88671996	88671996	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004329.2	+1	reviewed	e6-1	1.000	112	0%	60	40%	-	-	-	-	-	-
FAM35A	54537	genome.wustl.edu	37	10	88912440	88912440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019054.2	+1	validated	p.N443K	1.000	88	0%	57	33.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FAM35A	54537	genome.wustl.edu	37	10	88950307	88950307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019054.2	+1	validated	p.S792I	0.000	224	0%	89	10.1%	-	-	possibly_damaging(0.538)	tolerated(0.05)	deleterious(0.527)	NULL
KLLN	100144748	genome.wustl.edu	37	10	89621849	89621849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001126049.1	-1	validated	p.W132*	1.000	29	0%	69	33.3%	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89624245	89624245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000371953	+1	known	p.E7*	1.000	199	0%	263	78.7%	-	-	-	-	-	NULL
RNLS	55328	genome.wustl.edu	37	10	90122415	90122415	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031709.2	-1	validated	p.L198	1.000	123	0%	39	33.3%	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
LIPJ	142910	genome.wustl.edu	37	10	90356682	90356682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010939.2	+1	validated	p.N238Y	0.935	83	0%	26	80.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
LIPK	643414	genome.wustl.edu	37	10	90492005	90492005	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080518.1	+1	provisional	p.R165*	0.979	142	0%	57	14%	-	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
FAS	355	genome.wustl.edu	37	10	90750653	90750653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000043.3	+1	reviewed	p.L7P	0.001	42	0%	57	28.1%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
CH25H	9023	genome.wustl.edu	37	10	90966723	90966723	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003956.3	-1	reviewed	p.R109	0.874	35	0%	60	36.7%	-	-	-	-	-	NULL
SLC16A12	387700	genome.wustl.edu	37	10	91203589	91203589	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213606.3	-1	validated	p.F46	1.000	105	0%	33	36.4%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIF20B	9585	genome.wustl.edu	37	10	91468936	91468936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016195.2	+1	validated	p.E54K	0.999	61	0%	28	32.1%	-	-	benign(0.066)	tolerated(0.38)	neutral(0.022)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RPP30	10556	genome.wustl.edu	37	10	92656075	92656075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001104546.1	+1	validated	p.L208S	0.993	140	0%	36	41.7%	-	-	benign(0.042)	tolerated(0.12)	neutral(0.263)	HMMPfam_RNase_P_p30,superfamily_PHP domain-like
HECTD2	143279	genome.wustl.edu	37	10	93252196	93252196	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182765.3	+1	validated	p.E463*	1.000	327	0%	187	38%	-	-	-	-	-	HMMSmart_HECTc,superfamily_HECT
KIF11	3832	genome.wustl.edu	37	10	94405400	94405400	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004523.3	+1	reviewed	e18+1	1.000	43	0%	12	58.3%	-	-	-	-	-	-
EXOC6	54536	genome.wustl.edu	37	10	94594556	94594556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013848.2	+1	reviewed	p.E21K	0.998	142	0%	74	40.5%	-	-	benign(0.123)	tolerated(0.16)	neutral(0.069)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94708102	94708102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019053.4	+1	reviewed	p.S461N	1.000	87	0%	51	51%	-	-	possibly_damaging(0.49)	tolerated(0.36)	neutral(0.183)	HMMPfam_Sec15
MYOF	26509	genome.wustl.edu	37	10	95121223	95121223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013451.3	-1	reviewed	p.A987V	1.000	262	0%	100	37%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CEP55	55165	genome.wustl.edu	37	10	95279514	95279514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127182.1	+1	validated	p.L381I	1.000	109	0%	64	79.7%	-	-	probably_damaging(0.998)	tolerated(0.36)	deleterious(0.494)	NULL
PDE6C	5146	genome.wustl.edu	37	10	95381755	95381755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006204.3	+1	reviewed	p.A264S	1.000	193	0%	81	32.1%	-	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
FRA10AC1	118924	genome.wustl.edu	37	10	95445087	95445087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145246.4	-1	reviewed	p.D181Y	1.000	221	0%	41	36.6%	-	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	HMMPfam_Fra10Ac1
LGI1	9211	genome.wustl.edu	37	10	95557484	95557484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005097.2	+1	reviewed	p.R533H	0.999	54	0%	21	28.6%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_EPTP
SLC35G1	159371	genome.wustl.edu	37	10	95658454	95658454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134658.1	+1	validated	p.A102V	1.000	419	0%	379	35.4%	-	-	possibly_damaging(0.856)	tolerated(0.63)	neutral(0.334)	HMMPfam_DUF6
PLCE1	51196	genome.wustl.edu	37	10	96030321	96030321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016341.3	+1	reviewed	p.S1490P	1.000	117	0%	45	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96044713	96044713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016341.3	+1	reviewed	p.K1676Q	1.000	91	0%	25	28%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96058154	96058154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016341.3	+1	reviewed	p.R1729Q	1.000	102	0%	29	34.5%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96058346	96058346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016341.3	+1	reviewed	p.R1793H	1.000	83	0%	32	53.1%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96066183	96066183	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016341.3	+1	reviewed	e25-1	1.000	140	0%	64	12.5%	-	-	-	-	-	-
TBC1D12	23232	genome.wustl.edu	37	10	96291110	96291110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015188.1	+1	validated	p.H718N	1.000	123	0%	69	49.3%	-	-	benign(0.345)	deleterious(0.04)	neutral(0.458)	superfamily_RabGAP_TBC
HELLS	3070	genome.wustl.edu	37	10	96352228	96352228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018063.3	+1	reviewed	p.S643N	1.000	116	0%	51	41.2%	-	-	possibly_damaging(0.518)	deleterious(0.02)	deleterious(0.557)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALDH18A1	5832	genome.wustl.edu	37	10	97371059	97371059	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002860.3	-1	reviewed	p.I688	1.000	143	0%	70	44.3%	-	-	-	-	-	superfamily_ALDH-like,PatternScan_PROA
ALDH18A1	5832	genome.wustl.edu	37	10	97380905	97380905	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002860.3	-1	reviewed	p.S450	0.093	66	0%	30	30%	-	-	-	-	-	superfamily_ALDH-like
ALDH18A1	5832	genome.wustl.edu	37	10	97385182	97385182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002860.3	-1	reviewed	p.L395M	1.000	178	0%	87	34.5%	-	-	possibly_damaging(0.914)	tolerated(0.12)	deleterious(0.627)	superfamily_ALDH-like
TCTN3	26123	genome.wustl.edu	37	10	97445357	97445357	+	Missense_Mutation	SNP	C	C	T	rs55859130	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015631.5	-1	validated	p.A309T	0.087	128	0%	82	36.6%	-	-	benign(0.06)	tolerated(0.5)	neutral(0.014)	HMMPfam_DUF1619
CCNJ	54619	genome.wustl.edu	37	10	97817687	97817687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134375.1	+1	validated	p.R281W	0.103	276	0%	165	40%	-	-	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97916940	97916940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000371192	+1	known	p.E287D	1.000	95	0%	25	32%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
DNTT	1791	genome.wustl.edu	37	10	98078211	98078211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004088.3	+1	reviewed	p.L102	0.007	82	0%	31	32.3%	-	-	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
OPALIN	93377	genome.wustl.edu	37	10	98105791	98105791	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033207.3	-1	validated	p.S111	0.002	88	0%	31	51.6%	-	-	-	-	-	NULL
TLL2	7093	genome.wustl.edu	37	10	98136474	98136474	+	Missense_Mutation	SNP	G	G	A	rs183751282	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012465.3	-1	validated	p.S808L	0.955	78	0%	115	39.1%	-	-	benign(0.103)	deleterious(0)	neutral(0.453)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
TLL2	7093	genome.wustl.edu	37	10	98155128	98155128	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012465.3	-1	validated	p.H514	0.751	69	0%	75	28%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
PIK3AP1	118788	genome.wustl.edu	37	10	98383257	98383257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152309.2	-1	validated	p.F569L	0.946	138	0%	60	43.3%	-	-	benign(0)	tolerated(1)	-	NULL
PIK3AP1	118788	genome.wustl.edu	37	10	98411275	98411275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152309.2	-1	validated	p.F282L	1.000	164	0%	108	39.8%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
SLIT1	6585	genome.wustl.edu	37	10	98760929	98760929	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003061.2	-1	validated	p.G1515	0.999	12	0%	29	27.6%	-	-	-	-	-	HMMSmart_SM00041,PatternScan_CTCK_1
SLIT1	6585	genome.wustl.edu	37	10	98790534	98790534	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003061.2	-1	validated	p.D854	0.993	154	0.6%	130	41.5%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
MORN4	118812	genome.wustl.edu	37	10	99379279	99379279	+	Missense_Mutation	SNP	C	C	A	rs189101810	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370635	-1	known	p.Q44H	0.001	61	0%	64	42.2%	-	-	unknown(0)	-	-	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99695931	99695931	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018058.4	-1	validated	p.F139	1.000	43	0%	64	42.2%	-	-	-	-	-	HMMPfam_FG-GAP,superfamily_Integrin alpha N-terminal domain
CRTAC1	55118	genome.wustl.edu	37	10	99696077	99696077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018058.4	-1	validated	p.R91W	1.000	39	0%	77	35.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Integrin alpha N-terminal domain
LOXL4	84171	genome.wustl.edu	37	10	100017743	100017743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032211.6	-1	reviewed	p.G367D	1.000	19	0%	47	27.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
HPS1	3257	genome.wustl.edu	37	10	100184123	100184123	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000195.2	-1	reviewed	p.W448*	1.000	42	0%	52	36.5%	-	-	-	-	-	NULL
HPS1	3257	genome.wustl.edu	37	10	100185395	100185395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000195.2	-1	reviewed	p.P413L	0.938	27	0%	48	43.8%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
HPSE2	60495	genome.wustl.edu	37	10	100249906	100249906	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021828.4	-1	reviewed	p.V456	0.996	67	0%	34	32.4%	-	-	-	-	-	NULL
HPSE2	60495	genome.wustl.edu	37	10	100995408	100995408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021828.4	-1	reviewed	p.R51I	1.000	122	0%	163	41.1%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
ENTPD7	57089	genome.wustl.edu	37	10	101421277	101421277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020354.3	+1	validated	p.R28Q	0.996	249	0%	262	34.7%	-	-	benign(0.051)	tolerated(0.25)	neutral(0.040)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101636953	101636953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015221.2	-1	validated	p.K1563N	1.000	138	0%	97	11.3%	-	-	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CPN1	1369	genome.wustl.edu	37	10	101835789	101835789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001308.2	-1	reviewed	p.S100L	0.009	37	0%	37	78.4%	-	-	possibly_damaging(0.467)	tolerated(0.42)	neutral(0.168)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CWF19L1	55280	genome.wustl.edu	37	10	102005640	102005640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018294.4	-1	validated	p.L294V	1.000	145	0%	110	36.4%	-	-	possibly_damaging(0.808)	deleterious(0.03)	deleterious(0.668)	NULL
SCD	6319	genome.wustl.edu	37	10	102114286	102114286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005063.4	+1	validated	p.V182M	1.000	80	0%	96	13.5%	-	-	probably_damaging(0.998)	tolerated(0.55)	deleterious(0.481)	HMMPfam_FA_desaturase
WNT8B	7479	genome.wustl.edu	37	10	102222938	102222938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003393.3	+1	reviewed	p.K5E	1.000	245	0%	76	26.3%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
SEC31B	25956	genome.wustl.edu	37	10	102250561	102250561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015490.3	-1	reviewed	p.S851N	0.012	46	0%	47	10.6%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
FAM178A	55719	genome.wustl.edu	37	10	102685872	102685872	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370271	+1	known	p.L713*	0.115	42	0%	31	32.3%	-	-	-	-	-	NULL
FAM178A	55719	genome.wustl.edu	37	10	102689682	102689682	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136123.1	+1	validated	p.F754C	1.000	81	0%	50	26%	-	-	possibly_damaging(0.855)	deleterious(0.02)	deleterious(0.713)	NULL
SEMA4G	57715	genome.wustl.edu	37	10	102733310	102733310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017893.2	+1	reviewed	p.W94R	1.000	98	1%	167	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
C10orf2	56652	genome.wustl.edu	37	10	102750214	102750214	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021830.4	+1	reviewed	p.Q502	0.972	78	0%	104	35.6%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXW4	6468	genome.wustl.edu	37	10	103433325	103433325	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022039.3	-1	reviewed	p.R154	0.996	80	0%	43	32.6%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KCNIP2	30819	genome.wustl.edu	37	10	103587926	103587926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014591.4	-1	reviewed	p.D208	0.747	105	0%	173	37%	-	-	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
NOLC1	9221	genome.wustl.edu	37	10	103920269	103920269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004741.3	+1	validated	p.S387Y	0.049	63	0%	34	32.4%	-	-	unknown(0)	tolerated(0.06)	-	NULL
NOLC1	9221	genome.wustl.edu	37	10	103921374	103921374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004741.3	+1	validated	p.K601N	1.000	25	0%	34	38.2%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SRP40_C
NOLC1	9221	genome.wustl.edu	37	10	103921868	103921868	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004741.3	+1	validated	p.R648*	0.648	68	0%	55	27.3%	-	-	-	-	-	HMMPfam_SRP40_C
CUEDC2	79004	genome.wustl.edu	37	10	104183425	104183425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024040.2	-1	validated	p.A236T	1.000	145	0%	276	38.8%	-	-	possibly_damaging(0.876)	tolerated(0.19)	neutral(0.391)	NULL
ACTR1A	10121	genome.wustl.edu	37	10	104240624	104240624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005736.3	-1	reviewed	p.F376C	1.000	143	0%	150	33.3%	-	-	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTR1A	10121	genome.wustl.edu	37	10	104247943	104247943	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005736.3	-1	reviewed	p.V93	0.982	131	0%	130	43.1%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TRIM8	81603	genome.wustl.edu	37	10	104416955	104416955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030912.2	+1	validated	p.Q500H	1.000	35	0%	68	39.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SFXN2	118980	genome.wustl.edu	37	10	104491506	104491506	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178858.4	+1	validated	p.K207T	1.000	66	0%	80	36.2%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_Mtc
AS3MT	57412	genome.wustl.edu	37	10	104660433	104660433	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000369880	+1	known	p.C368	0.999	186	0%	104	33.7%	-	-	-	-	-	NULL
LOC729020	729020	genome.wustl.edu	37	10	105006251	105006251	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143909.1	+1	provisional	p.Q166	1.000	269	0%	257	11.7%	-	-	-	-	-	HMMPfam_Ribul_P_3_epim,superfamily_RibP_bind_barrel
PDCD11	22984	genome.wustl.edu	37	10	105172904	105172904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014976.1	+1	validated	p.R337Q	0.799	78	1.3%	78	34.6%	-	-	benign(0.376)	tolerated(0.4)	neutral(0.136)	superfamily_Nucleic_acid_OB,HMMSmart_S1
CALHM2	51063	genome.wustl.edu	37	10	105207304	105207304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015916.4	-1	validated	p.G193S	0.904	21	0%	35	65.7%	-	-	probably_damaging(0.981)	tolerated(0.16)	deleterious(0.485)	NULL
CALHM3	119395	genome.wustl.edu	37	10	105233223	105233223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001129742.1	-1	validated	p.R261Q	0.003	7	0.000	16	0.250	-	-	possibly_damaging(0.78)	tolerated(0.13)	deleterious(0.544)	NULL
SLK	9748	genome.wustl.edu	37	10	105761241	105761241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014720.2	+1	provisional	p.E302*	1.000	195	0%	73	34.2%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105831820	105831820	+	Nonsense_Mutation	SNP	G	G	A	rs121912774		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000494.3	-1	reviewed	p.R145*	1.000	118	0%	59	37.3%	-	-	-	-	-	NULL
GSTO2	119391	genome.wustl.edu	37	10	106035092	106035092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183239.1	+1	provisional	p.R48K	0.999	28	0%	60	38.3%	-	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
CCDC147	159686	genome.wustl.edu	37	10	106125686	106125686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008723.1	+1	validated	p.E238*	1.000	116	0%	28	39.3%	-	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106209872	106209872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008723.1	+1	validated	p.E807G	1.000	91	0%	35	11.4%	-	-	possibly_damaging(0.523)	tolerated(0.1)	neutral(0.463)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108388965	108388965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013031.1	-1	reviewed	p.V886A	1.000	62	0%	26	42.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD
SORCS1	114815	genome.wustl.edu	37	10	108489809	108489809	+	Silent	SNP	A	A	G	rs190294057	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013031.1	-1	reviewed	p.G341	1.000	138	0%	67	34.3%	-	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108716314	108716314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013031.1	-1	reviewed	p.Y195H	1.000	125	0%	99	13.1%	-	-	benign(0.008)	tolerated(0.17)	neutral(0.059)	superfamily_SSF110296
ADD3	120	genome.wustl.edu	37	10	111881957	111881957	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016824.3	+1	reviewed	p.A350	0.000	231	0%	73	38.4%	-	-	-	-	-	NULL
MXI1	4601	genome.wustl.edu	37	10	112044701	112044701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130439.3	+1	reviewed	p.E282K	1.000	121	0%	36	30.6%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
SMC3	9126	genome.wustl.edu	37	10	112361457	112361457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005445.3	+1	reviewed	p.R903C	1.000	114	0%	63	42.9%	-	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBM20	282996	genome.wustl.edu	37	10	112541342	112541342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134363.1	+1	reviewed	p.F325L	0.968	58	0%	35	34.3%	-	-	benign(0.34)	tolerated(0.16)	neutral(0.167)	NULL
RBM20	282996	genome.wustl.edu	37	10	112572426	112572426	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134363.1	+1	reviewed	p.D757	0.026	53	0%	44	34.1%	-	-	-	-	-	NULL
GPAM	57678	genome.wustl.edu	37	10	113937748	113937748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020918.4	-1	validated	p.H98R	1.000	68	1.5%	69	40.6%	-	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
ACSL5	51703	genome.wustl.edu	37	10	114181350	114181350	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016234.3	+1	reviewed	e15-1	1.000	97	0%	42	33.3%	-	-	-	-	-	-
TCF7L2	6934	genome.wustl.edu	37	10	114912130	114912130	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030756.4	+1	reviewed	p.Y377	0.996	64	0%	50	50%	-	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
NRAP	4892	genome.wustl.edu	37	10	115417251	115417251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198060.2	-1	validated	p.N113S	0.000	202	0%	66	42.4%	-	-	benign(0)	tolerated(0.99)	-	NULL
NRAP	4892	genome.wustl.edu	37	10	115417292	115417292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198060.2	-1	validated	p.F99L	1.000	214	0%	65	35.4%	-	-	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
CASP7	840	genome.wustl.edu	37	10	115457282	115457282	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033338.4	+1	reviewed	p.E43	0.222	180	0%	57	36.8%	-	-	-	-	-	NULL
C10orf81	79949	genome.wustl.edu	37	10	115528619	115528619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000369310	+1	known	p.Q129H	0.008	190	0%	63	19%	-	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00233,superfamily_PH domain-like
C10orf81	79949	genome.wustl.edu	37	10	115531798	115531798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000369310	+1	known	p.D202Y	0.135	193	0%	54	46.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
AFAP1L2	84632	genome.wustl.edu	37	10	116061170	116061170	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001936.1	-1	validated	p.S495	0.003	136	0%	174	9.8%	-	-	-	-	-	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116335264	116335264	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002313.5	-1	reviewed	p.C158	1.000	103	0%	32	43.8%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FAM160B1	57700	genome.wustl.edu	37	10	116620523	116620523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020940.3	+1	validated	p.L655V	1.000	291	0.3%	102	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM160B1	57700	genome.wustl.edu	37	10	116621012	116621012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020940.3	+1	validated	p.R704Q	1.000	169	0.6%	63	41.3%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
ATRNL1	26033	genome.wustl.edu	37	10	117045869	117045869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207303.2	+1	validated	p.E793*	1.000	135	0%	27	37%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
C10orf96	374355	genome.wustl.edu	37	10	118117439	118117439	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198515.2	+1	validated	p.T214	0.982	113	0%	23	43.5%	-	-	-	-	-	NULL
LOC100287264	100287264	genome.wustl.edu	37	10	120354379	120354379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343034.1	+1	model	p.A210S	1.000	11	0%	27	48.1%	-	-	-	-	-	NULL
C10orf46	143384	genome.wustl.edu	37	10	120460905	120460905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153810.4	-1	validated	p.E237K	1.000	171	0%	132	32.6%	-	-	possibly_damaging(0.677)	tolerated(0.48)	neutral(0.252)	HMMPfam_Cullin,superfamily_Cullin repeat
EIF3A	8661	genome.wustl.edu	37	10	120810725	120810725	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003750.2	-1	validated	p.Q769*	0.984	102	0%	66	37.9%	-	-	-	-	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120817632	120817632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003750.2	-1	validated	p.R605W	1.000	252	0.4%	146	34.2%	-	-	unknown(0)	deleterious(0)	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120819163	120819163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003750.2	-1	validated	p.F465S	1.000	115	0%	38	44.7%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_PCI,HMMSmart_SM00088
TIAL1	7073	genome.wustl.edu	37	10	121341981	121341981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033925.1	-1	reviewed	p.I90S	1.000	107	0%	38	36.8%	-	-	benign(0.067)	deleterious(0)	neutral(0.449)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
INPP5F	22876	genome.wustl.edu	37	10	121580368	121580368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014937.2	+1	reviewed	p.A633S	1.000	358	0%	410	39.8%	-	-	benign(0.116)	tolerated(0.71)	neutral(0.010)	NULL
INPP5F	22876	genome.wustl.edu	37	10	121586565	121586565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014937.2	+1	reviewed	p.S891N	1.000	135	0%	61	39.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MCMBP	79892	genome.wustl.edu	37	10	121591008	121591008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024834.2	-1	validated	p.C636Y	0.999	90	0%	46	41.3%	-	-	benign(0.006)	tolerated(1)	-	NULL
WDR11	55717	genome.wustl.edu	37	10	122665427	122665427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018117.11	+1	reviewed	p.R1111W	1.000	128	0%	104	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATE1	11101	genome.wustl.edu	37	10	123673319	123673319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001976.1	-1	reviewed	p.K108R	0.995	315	0%	191	36.1%	-	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
NSMCE4A	54780	genome.wustl.edu	37	10	123727191	123727191	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017615.2	-1	validated	p.K211T	1.000	415	0%	346	35.3%	-	-	benign(0.005)	tolerated(0.33)	neutral(0.024)	HMMPfam_Nse4
TACC2	10579	genome.wustl.edu	37	10	123781451	123781451	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206862.2	+1	reviewed	e1-1	0.893	127	0%	89	32.6%	-	-	-	-	-	-
TACC2	10579	genome.wustl.edu	37	10	123842598	123842598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206862.2	+1	reviewed	p.D195N	0.001	16	0%	19	52.6%	-	-	possibly_damaging(0.913)	tolerated(0.05)	deleterious(0.710)	NULL
TACC2	10579	genome.wustl.edu	37	10	123843806	123843806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206862.2	+1	reviewed	p.E597D	0.000	51	0%	44	43.2%	-	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
TACC2	10579	genome.wustl.edu	37	10	123903110	123903110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206862.2	+1	reviewed	p.A1908V	0.000	47	0%	49	42.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
TACC2	10579	genome.wustl.edu	37	10	123985889	123985889	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206862.2	+1	reviewed	p.D2539	0.193	100	0%	84	36.9%	-	-	-	-	-	NULL
BTBD16	118663	genome.wustl.edu	37	10	124057314	124057314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144587.2	+1	validated	p.P208T	0.026	59	0%	47	36.2%	-	-	possibly_damaging(0.794)	tolerated(0.12)	deleterious(0.558)	NULL
HTRA1	5654	genome.wustl.edu	37	10	124271543	124271543	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002775.4	+1	reviewed	p.A412	0.530	117	0%	126	36.5%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DMBT1	1755	genome.wustl.edu	37	10	124330409	124330409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007329.2	+1	reviewed	p.S48F	0.004	247	0%	156	34%	-	-	possibly_damaging(0.952)	deleterious(0.05)	deleterious(0.741)	NULL
DMBT1	1755	genome.wustl.edu	37	10	124361566	124361566	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007329.2	+1	reviewed	p.W1199*	0.098	127	0%	82	8.5%	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
PSTK	118672	genome.wustl.edu	37	10	124742271	124742271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153336.2	+1	validated	p.R80Q	1.000	129	0%	107	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KTI12,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACADSB	36	genome.wustl.edu	37	10	124803919	124803919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001609.3	+1	reviewed	p.A273V	0.001	140	0%	82	28%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Acyl-CoA dehydrogenase NM domain-like
HMX3	340784	genome.wustl.edu	37	10	124895966	124895966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105574.1	+1	validated	p.A134T	1.000	6	0.000	19	0.421	-	-	benign(0.138)	deleterious(0.03)	neutral(0.376)	NULL
CPXM2	119587	genome.wustl.edu	37	10	125514227	125514227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198148.2	-1	validated	p.P657S	0.993	365	0%	233	33%	-	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
CPXM2	119587	genome.wustl.edu	37	10	125639816	125639816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198148.2	-1	validated	p.S105I	0.987	149	0%	176	18.8%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
CHST15	51363	genome.wustl.edu	37	10	125804351	125804351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015892.2	-1	validated	p.D211N	0.995	173	0.6%	290	32.4%	-	-	benign(0.202)	tolerated(0.05)	neutral(0.365)	NULL
LHPP	64077	genome.wustl.edu	37	10	126301863	126301863	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022126.3	+1	validated	p.K249	0.985	34	0%	76	42.1%	-	-	-	-	-	superfamily_SSF56784
FAM175B	23172	genome.wustl.edu	37	10	126495403	126495403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032182.3	+1	validated	p.G26*	1.000	106	0%	181	32%	-	-	-	-	-	NULL
CTBP2	1488	genome.wustl.edu	37	10	126683167	126683167	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022802.2	-1	reviewed	p.I757	0.196	107	0.9%	120	45%	-	-	-	-	-	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd
CTBP2	1488	genome.wustl.edu	37	10	126683226	126683226	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022802.2	-1	reviewed	p.R738*	1.000	60	0%	87	74.7%	-	-	-	-	-	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd
CTBP2	1488	genome.wustl.edu	37	10	126727577	126727577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083914.1	-1	reviewed	p.R16K	1.000	190	0%	164	42.1%	-	-	benign(0.069)	tolerated(0.18)	neutral(0.060)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127436431	127436431	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015608.2	+1	validated	e20-1	1.000	104	0%	30	40%	-	-	-	-	-	-
FAM196A	642938	genome.wustl.edu	37	10	128973774	128973774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039762.2	-1	validated	p.G296R	1.000	25	0%	41	26.8%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
NPS	594857	genome.wustl.edu	37	10	129347803	129347803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001030013.1	+1	provisional	p.V20A	0.003	416	0%	103	35%	-	-	benign(0.028)	tolerated(0.3)	neutral(0.030)	NULL
MKI67	4288	genome.wustl.edu	37	10	129903782	129903782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002417.4	-1	reviewed	p.P2108S	0.000	634	0%	352	34.4%	-	-	possibly_damaging(0.863)	tolerated(0.23)	neutral(0.375)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905233	129905233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002417.4	-1	reviewed	p.K1624R	0.000	418	0%	190	42.1%	-	-	possibly_damaging(0.883)	tolerated(0.68)	neutral(0.347)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905807	129905807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002417.4	-1	reviewed	p.A1433T	0.000	511	0%	274	11.7%	-	-	benign(0.008)	tolerated(0.21)	neutral(0.044)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129913402	129913402	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002417.4	-1	reviewed	p.G424*	0.000	76	0%	69	27.5%	-	-	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129913938	129913938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002417.4	-1	reviewed	p.K245T	0.952	166	0%	106	41.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EBF3	253738	genome.wustl.edu	37	10	131638559	131638559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005463.1	-1	validated	p.Q525R	1.000	48	0%	90	15.6%	-	-	benign(0.006)	tolerated(0.19)	neutral(0.050)	NULL
EBF3	253738	genome.wustl.edu	37	10	131639252	131639252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005463.1	-1	validated	p.V464I	1.000	100	0%	199	40.7%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
GLRX3	10539	genome.wustl.edu	37	10	131969898	131969898	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006541.3	+1	provisional	p.T274	0.978	201	0%	114	25.4%	-	-	-	-	-	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
TCERG1L	256536	genome.wustl.edu	37	10	132896662	132896662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174937.3	-1	validated	p.R504I	0.999	312	0%	434	28.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_FF
TCERG1L	256536	genome.wustl.edu	37	10	132902535	132902535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174937.3	-1	validated	p.R493Q	0.980	115	0%	148	40.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_FF,HMMSmart_FF,superfamily_FF
BNIP3	664	genome.wustl.edu	37	10	133784270	133784270	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004052.2	-1	reviewed	p.P137	0.130	162	0%	282	37.6%	-	-	-	-	-	HMMPfam_BNIP3
LRRC27	80313	genome.wustl.edu	37	10	134188617	134188617	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143757.1	+1	validated	p.T488	0.007	82	0%	142	33.1%	-	-	-	-	-	NULL
C10orf91	170393	genome.wustl.edu	37	10	134261528	134261528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173541.2	+1	validated	p.V134A	0.003	55	0%	114	35.1%	-	-	benign(0.007)	-	-	NULL
TTC40	54777	genome.wustl.edu	37	10	134755143	134755143	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173572.3	-1	validated	p.A86	0.991	28	0%	86	43%	-	-	-	-	-	NULL
GPR123	84435	genome.wustl.edu	37	10	134896164	134896164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000392609	+1	known	p.G238D	0.000	41	0%	87	31%	-	-	unknown(0)	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	134999888	134999888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152643.6	+1	validated	p.L346M	0.000	6	0.000	14	0.286	-	-	benign(0.386)	tolerated(0.15)	neutral(0.364)	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135095793	135095793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006659.2	-1	validated	p.E781D	0.995	13	0%	41	43.9%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135099067	135099067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006659.2	-1	validated	p.Q596H	1.000	25	0%	54	38.9%	-	-	benign(0.382)	tolerated(0.16)	neutral(0.181)	HMMPfam_Spc97_Spc98
CALY	50632	genome.wustl.edu	37	10	135142414	135142414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015722.3	-1	validated	p.V27A	0.999	21	0%	35	37.1%	-	-	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	HMMPfam_Calcyon
PRAP1	118471	genome.wustl.edu	37	10	135165543	135165543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145202.4	+1	validated	p.E54G	0.008	31	0%	62	37.1%	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
C10orf125	282969	genome.wustl.edu	37	10	135168879	135168879	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098483.1	-1	validated	p.L154	0.000	14	0%	52	38.5%	-	-	-	-	-	NULL
ECHS1	1892	genome.wustl.edu	37	10	135182521	135182521	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004092.3	-1	reviewed	p.G140	0.995	90	0%	179	46.4%	-	-	-	-	-	HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_SSF52096
MTG1	92170	genome.wustl.edu	37	10	135209264	135209264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138384.2	+1	validated	p.E54K	1.000	66	0%	145	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATHL1	80162	genome.wustl.edu	37	11	290533	290533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025092.4	+1	validated	p.R135W	0.038	18	0%	25	56%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
IFITM5	387733	genome.wustl.edu	37	11	299488	299488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025295.1	-1	provisional	p.M1I	1.000	16	0%	44	20.5%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
B4GALNT4	338707	genome.wustl.edu	37	11	376260	376260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178537.4	+1	validated	p.F402L	1.000	8	0.000	31	0.258	-	-	unknown(0)	deleterious(0)	-	NULL
PHRF1	57661	genome.wustl.edu	37	11	608470	608470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020901.2	+1	validated	p.A1004V	0.000	10	0%	14	50%	-	-	benign(0.079)	tolerated(0.06)	neutral(0.328)	NULL
PHRF1	57661	genome.wustl.edu	37	11	611774	611774	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020901.2	+1	validated	p.G1648	1.000	19	0%	58	43.1%	-	-	-	-	-	NULL
CDHR5	53841	genome.wustl.edu	37	11	619689	619689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021924.4	-1	reviewed	p.E391K	0.009	38	0%	88	30.7%	-	-	probably_damaging(0.955)	tolerated(0.17)	neutral(0.458)	superfamily_Cadherin-like
DEAF1	10522	genome.wustl.edu	37	11	681026	681026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021008.2	-1	validated	p.T312P	0.000	273	0%	411	37.2%	-	-	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
PDDC1	347862	genome.wustl.edu	37	11	774012	774012	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182612.2	-1	validated	p.I81	0.706	32	0%	70	32.9%	-	-	-	-	-	HMMPfam_DJ-1_PfpI,superfamily_Class I glutamine amidotransferase-like
MUC5B	727897	genome.wustl.edu	37	11	1251266	1251266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002458.1	+1	validated	p.D421N	0.029	18	0%	61	37.7%	-	-	probably_damaging(0.982)	-	-	HMMSmart_SM00214,HMMSmart_SM00216,HMMSmart_SM00215,superfamily_PMP inhibitors
MUC5B	727897	genome.wustl.edu	37	11	1265554	1265554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002458.1	+1	validated	p.A2485S	0.010	320	0%	551	18.3%	-	-	benign(0.104)	-	-	NULL
TOLLIP	54472	genome.wustl.edu	37	11	1311514	1311514	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019009.3	-1	validated	p.V103	0.997	101	0%	164	36%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
KRTAP5-3	387266	genome.wustl.edu	37	11	1629487	1629487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012708.2	-1	validated	p.K43N	1.000	89	0%	160	14.4%	-	-	unknown(0)	tolerated(0.46)	-	NULL
CTSD	1509	genome.wustl.edu	37	11	1782585	1782585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001909.3	-1	reviewed	p.A61V	0.007	69	0%	130	42.3%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_Pept_Aspartic
LSP1	4046	genome.wustl.edu	37	11	1908482	1908482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002339.2	+1	reviewed	p.D290Y	1.000	84	1.2%	167	28.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IGF2	3481	genome.wustl.edu	37	11	2161456	2161456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127598.1	-1	reviewed	p.R24H	0.454	28	0%	62	11.3%	-	-	benign(0.169)	deleterious(0)	neutral(0.460)	NULL
CD81	975	genome.wustl.edu	37	11	2416741	2416741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004356.3	+1	reviewed	p.F150	1.000	9	0.000	61	0.180	-	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TRPM5	29850	genome.wustl.edu	37	11	2439059	2439059	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014555.3	-1	validated	p.L303	1.000	15	0%	54	42.6%	-	-	-	-	-	NULL
TRPM5	29850	genome.wustl.edu	37	11	2439430	2439430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014555.3	-1	validated	p.F291L	0.999	30	0%	77	37.7%	-	-	possibly_damaging(0.818)	tolerated(0.53)	neutral(0.317)	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2976993	2976993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005969.3	-1	reviewed	p.S299Y	0.989	130	0%	85	38.8%	-	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_NAP
CARS	833	genome.wustl.edu	37	11	3028127	3028127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014437.1	-1	reviewed	p.R711W	1.000	30	0%	48	27.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF195	7748	genome.wustl.edu	37	11	3392255	3392255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130520.1	-1	validated	p.R59Q	0.000	171	0%	81	29.6%	-	-	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
NUP98	4928	genome.wustl.edu	37	11	3704496	3704496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016320.4	-1	reviewed	p.L1618F	1.000	156	0%	77	37.7%	-	-	possibly_damaging(0.611)	tolerated(0.71)	neutral(0.213)	NULL
PGAP2	27315	genome.wustl.edu	37	11	3846314	3846314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014489.2	+1	validated	p.A258V	0.998	203	0.5%	264	40.9%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Frag1
STIM1	6786	genome.wustl.edu	37	11	4112725	4112725	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003156.3	+1	reviewed	p.A585	1.000	54	0%	72	16.7%	-	-	-	-	-	NULL
TRIM21	6737	genome.wustl.edu	37	11	4409757	4409757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003141.3	-1	reviewed	p.T170A	0.006	88	0%	42	9.5%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ENSG00000225101	0	genome.wustl.edu	37	11	4496847	4496847	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000416879	+1	known	p.A53	0.001	77	0%	28	46.4%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR52M1	119772	genome.wustl.edu	37	11	4567169	4567169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004137.1	+1	validated	p.A250V	0.616	403	0%	160	35.6%	-	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_7tm_1,superfamily_SSF81321
C11orf40	143501	genome.wustl.edu	37	11	4593396	4593396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144663.1	-1	provisional	p.L146S	0.171	153	0%	78	29.5%	-	-	unknown(0)	-	-	NULL
OR51E2	81285	genome.wustl.edu	37	11	4703877	4703877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030774.3	-1	validated	p.A22V	0.152	63	0%	35	40%	-	-	benign(0.117)	tolerated(1)	neutral(0.009)	superfamily_Family A G protein-coupled receptor-like
OR51T1	401665	genome.wustl.edu	37	11	4903187	4903187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004759.1	+1	provisional	p.P47S	0.927	247	0%	118	17.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Family A G protein-coupled receptor-like
OR51A2	401667	genome.wustl.edu	37	11	4976546	4976546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004748.1	-1	provisional	p.R133I	0.997	294	0%	135	35.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
HBG1	3047	genome.wustl.edu	37	11	5269676	5269676	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000559.2	-1	reviewed	p.F119	0.003	111	0%	50	40%	-	-	-	-	-	superfamily_Globin-like
HBG2	3048	genome.wustl.edu	37	11	5275536	5275536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000184.2	-1	reviewed	p.P101S	1.000	292	0%	101	18.8%	-	-	benign(0.304)	deleterious(0.01)	deleterious(0.500)	HMMPfam_Globin,superfamily_Globin-like
HBE1	3046	genome.wustl.edu	37	11	5290702	5290702	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005330.3	-1	reviewed	p.V99	1.000	151	0%	30	36.7%	-	-	-	-	-	HMMPfam_Globin,superfamily_Globin-like
OR51M1	390059	genome.wustl.edu	37	11	5411371	5411371	+	Missense_Mutation	SNP	G	G	A	rs181392844	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004756.2	+1	validated	p.R248H	0.240	143	0.7%	55	34.5%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52D1	390066	genome.wustl.edu	37	11	5510141	5510141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005163.2	+1	validated	p.L69F	0.997	270	0%	116	36.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
UBQLN3	50613	genome.wustl.edu	37	11	5529180	5529180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017481.2	-1	reviewed	p.E537*	1.000	20	0%	21	38.1%	-	-	-	-	-	NULL
TRIM5	85363	genome.wustl.edu	37	11	5686556	5686556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033034.2	-1	reviewed	p.S322Y	0.085	91	0%	53	22.6%	-	-	benign(0)	tolerated(1)	-	NULL
TRIM5	85363	genome.wustl.edu	37	11	5686814	5686814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033092.2	-1	reviewed	p.L323V	0.000	101	0%	70	41.4%	-	-	unknown(0)	tolerated(0.66)	-	NULL
TRIM5	85363	genome.wustl.edu	37	11	5687302	5687302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000380015	-1	known	p.R252C	0.000	148	0%	73	32.9%	-	-	benign(0.048)	tolerated(0.21)	neutral(0.047)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5717810	5717810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006074.3	+1	reviewed	p.C116*	0.491	75	0%	70	12.9%	-	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336
OR52N5	390075	genome.wustl.edu	37	11	5799132	5799132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001922.2	-1	validated	p.K245E	0.931	226	0%	47	12.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56A3	390083	genome.wustl.edu	37	11	5969271	5969271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003443.2	+1	provisional	p.L232R	0.280	186	0%	87	36.8%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_7tm_1,superfamily_SSF81321
OR56A5	390084	genome.wustl.edu	37	11	5989708	5989708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343047.1	-1	model	p.N6T	0.001	145	0%	113	36.3%	-	-	-	-	-	NULL
OR52L1	338751	genome.wustl.edu	37	11	6007675	6007675	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005173.2	-1	validated	p.I162	0.007	91	0%	44	18.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56A1	120796	genome.wustl.edu	37	11	6048148	6048148	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001917.2	-1	validated	p.L263	0.442	103	0%	31	32.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52L2P	79274	genome.wustl.edu	37	11	6078704	6078704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000316540	-1	known	p.V268I	0.000	151	0%	31	32.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM160A2	84067	genome.wustl.edu	37	11	6238808	6238808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032127.3	-1	validated	p.G684*	1.000	81	0%	84	29.8%	-	-	-	-	-	NULL
CNGA4	1262	genome.wustl.edu	37	11	6261526	6261526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037329.2	+1	validated	p.R168C	1.000	21	0%	36	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TRIM3	10612	genome.wustl.edu	37	11	6470629	6470629	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006458.2	-1	reviewed	p.G663	0.096	38	0%	28	32.1%	-	-	-	-	-	superfamily_NHL repeat
TRIM3	10612	genome.wustl.edu	37	11	6479055	6479055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006458.2	-1	reviewed	p.A129D	1.000	33	0%	59	11.9%	-	-	benign(0.147)	tolerated(0.17)	neutral(0.072)	HMMPfam_zf-B_box,HMMSmart_SM00336
DNHD1	144132	genome.wustl.edu	37	11	6591951	6591951	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144666.2	+1	provisional	p.A4403	1.000	21	0%	31	32.3%	-	-	-	-	-	HMMPfam_Dynein_heavy
DNHD1	144132	genome.wustl.edu	37	11	6592364	6592364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144666.2	+1	provisional	p.A4541V	0.003	13	0%	27	29.6%	-	-	possibly_damaging(0.806)	deleterious(0.02)	deleterious(0.686)	HMMPfam_Dynein_heavy
TPP1	1200	genome.wustl.edu	37	11	6636701	6636701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000391.3	-1	reviewed	p.S413N	1.000	207	0%	294	39.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Subtilisin-like
DCHS1	8642	genome.wustl.edu	37	11	6644428	6644428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003737.2	-1	reviewed	p.R2827W	0.979	23	0%	76	36.8%	-	-	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	HMMPfam_Cadherin,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6646054	6646054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003737.2	-1	reviewed	p.V2398I	0.998	77	0%	90	36.7%	-	-	probably_damaging(0.979)	tolerated(0.11)	deleterious(0.694)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6648209	6648209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003737.2	-1	reviewed	p.R2021C	1.000	28	0%	48	14.6%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6661414	6661414	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003737.2	-1	reviewed	p.Y477	1.000	50	0%	56	14.3%	-	-	-	-	-	superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6662431	6662431	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003737.2	-1	reviewed	p.D138	1.000	10	0%	21	28.6%	-	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
OR2AG2	338755	genome.wustl.edu	37	11	6789965	6789965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004490.1	-1	provisional	p.S75Y	0.183	187	0%	59	20.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR6A2	8590	genome.wustl.edu	37	11	6816559	6816559	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003696.2	-1	provisional	p.R127	0.439	156	0%	41	17.1%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR6A2	8590	genome.wustl.edu	37	11	6816637	6816637	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003696.2	-1	provisional	p.G101	0.337	206	0%	61	37.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ZNF214	7761	genome.wustl.edu	37	11	7021205	7021205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013249.2	-1	validated	p.R570Q	0.988	159	0.6%	26	23.1%	-	-	benign(0.11)	tolerated(0.75)	neutral(0.010)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF214	7761	genome.wustl.edu	37	11	7022198	7022198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013249.2	-1	validated	p.R239I	1.000	95	1.1%	18	44.4%	-	-	benign(0.395)	deleterious(0.04)	deleterious(0.476)	superfamily_C2H2 and C2HC zinc fingers
NLRP14	338323	genome.wustl.edu	37	11	7063993	7063993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176822.3	+1	reviewed	p.E246*	0.003	106	0%	27	44.4%	-	-	-	-	-	HMMPfam_NACHT
PPFIBP2	8495	genome.wustl.edu	37	11	7647053	7647053	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003621.2	+1	validated	p.E253*	1.000	49	0%	24	50%	-	-	-	-	-	HMMPfam_Integrase_DNA
NLRP10	338322	genome.wustl.edu	37	11	7981440	7981440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176821.3	-1	reviewed	p.K573N	0.489	106	0%	82	35.4%	-	-	possibly_damaging(0.718)	deleterious(0.04)	deleterious(0.609)	NULL
TUB	7275	genome.wustl.edu	37	11	8118889	8118889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003320.4	+1	reviewed	p.R323C	1.000	74	0%	68	30.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tub,superfamily_Tubby_C
STK33	65975	genome.wustl.edu	37	11	8494816	8494816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030906.2	-1	validated	p.R78I	0.009	99	0%	42	35.7%	-	-	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
SCUBE2	57758	genome.wustl.edu	37	11	9048979	9048979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020974.2	-1	validated	p.I849S	1.000	187	0%	125	37.6%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SWAP70	23075	genome.wustl.edu	37	11	9754136	9754136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015055.2	+1	validated	p.R320H	1.000	62	0%	42	33.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_SSF50729
SBF2	81846	genome.wustl.edu	37	11	9990071	9990071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030962.3	-1	reviewed	p.A473T	1.000	161	0%	93	11.8%	-	-	benign(0.004)	tolerated(1)	-	NULL
AMPD3	272	genome.wustl.edu	37	11	10527398	10527398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000480.2	+1	reviewed	p.M766I	1.000	51	0%	40	35%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
RNF141	50862	genome.wustl.edu	37	11	10552207	10552207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016422.3	-1	reviewed	p.R79W	0.996	90	0%	50	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTR9	9646	genome.wustl.edu	37	11	10776737	10776737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014633.3	+1	provisional	p.Y126C	1.000	84	0%	71	11.3%	-	-	possibly_damaging(0.899)	deleterious(0.01)	deleterious(0.762)	NULL
MICAL2	9645	genome.wustl.edu	37	11	12241936	12241936	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014632.2	+1	provisional	p.N379	0.806	84	0%	92	40.2%	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
MICAL2	9645	genome.wustl.edu	37	11	12245009	12245009	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014632.2	+1	provisional	p.L501	0.010	63	0%	87	28.7%	-	-	-	-	-	superfamily_Calponin-homology domain CH-domain
MICAL2	9645	genome.wustl.edu	37	11	12263953	12263953	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014632.2	+1	provisional	p.Q844*	1.000	27	0%	23	21.7%	-	-	-	-	-	NULL
ARNTL	406	genome.wustl.edu	37	11	13395690	13395690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000256172	+1	known	p.V301M	0.477	161	0%	55	36.4%	-	-	-	-	-	NULL
COPB1	1315	genome.wustl.edu	37	11	14480092	14480092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144061.1	-1	reviewed	p.R930C	1.000	57	0%	45	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Coatamer_beta_C
PLEKHA7	144100	genome.wustl.edu	37	11	16810680	16810680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175058.4	-1	validated	p.R1107H	1.000	24	0%	24	41.7%	-	-	benign(0.036)	deleterious(0.05)	neutral(0.347)	NULL
PIK3C2A	5286	genome.wustl.edu	37	11	17190961	17190961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002645.2	-1	validated	p.E110K	1.000	163	0%	102	37.3%	-	-	possibly_damaging(0.832)	tolerated(0.17)	neutral(0.376)	NULL
ABCC8	6833	genome.wustl.edu	37	11	17415890	17415890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000352.3	-1	reviewed	p.C1490R	1.000	20	0%	44	40.9%	-	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17417469	17417469	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000352.3	-1	reviewed	p.I1376	1.000	27	0%	59	20.3%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17418553	17418553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000352.3	-1	reviewed	p.K1343N	1.000	79	0%	111	44.1%	-	-	benign(0.245)	tolerated(0.25)	neutral(0.062)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17464777	17464777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000352.3	-1	reviewed	p.P472H	1.000	89	0%	52	34.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17547986	17547986	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153676.3	-1	reviewed	p.G194	0.000	29	0%	33	45.5%	-	-	-	-	-	superfamily_PDZ
SERGEF	26297	genome.wustl.edu	37	11	18017406	18017406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012139.2	-1	validated	p.R187W	1.000	87	1.1%	41	46.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_RCC1/BLIP-II
MRGPRX4	117196	genome.wustl.edu	37	11	18195195	18195195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054032.3	+1	validated	p.R131H	0.000	249	0%	165	32.7%	-	-	benign(0.086)	tolerated(0.61)	neutral(0.010)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GTF2H1	2965	genome.wustl.edu	37	11	18373945	18373945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142307.1	+1	validated	p.F404L	1.000	99	0%	49	30.6%	-	-	benign(0)	tolerated(1)	-	NULL
TSG101	7251	genome.wustl.edu	37	11	18536387	18536387	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006292.2	-1	reviewed	p.G65	0.995	85	0%	57	33.3%	-	-	-	-	-	HMMSmart_SM00212,HMMPfam_UEV,superfamily_UBC-like
ENSG00000247595	0	genome.wustl.edu	37	11	18631221	18631221	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501599	+1	known	NULL	0.559	28	0%	22	40.9%	-	-	-	-	-	-
SPTY2D1	144108	genome.wustl.edu	37	11	18638521	18638521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194285.2	-1	validated	p.A26T	1.000	188	0%	150	41.3%	-	-	possibly_damaging(0.645)	tolerated(0.07)	deleterious(0.545)	NULL
NAV2	89797	genome.wustl.edu	37	11	20066528	20066528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182964.5	+1	validated	p.A1072T	1.000	28	0%	26	30.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20668481	20668481	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004211.3	+1	reviewed	e14+1	1.000	182	0%	106	32.1%	-	-	-	-	-	-
ANO5	203859	genome.wustl.edu	37	11	22281149	22281149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213599.2	+1	reviewed	p.D498Y	0.018	303	0%	81	34.6%	-	-	benign(0.314)	tolerated(0.18)	neutral(0.154)	NULL
GAS2	2620	genome.wustl.edu	37	11	22759271	22759271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143830.1	+1	reviewed	p.E144K	1.000	138	0%	44	43.2%	-	-	possibly_damaging(0.852)	tolerated(0.4)	neutral(0.344)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ANO3	63982	genome.wustl.edu	37	11	26621225	26621225	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031418.2	+1	validated	p.V600	1.000	312	0%	122	41%	-	-	-	-	-	NULL
SLC5A12	159963	genome.wustl.edu	37	11	26695020	26695020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178498.3	-1	validated	p.F546V	1.000	136	0%	38	28.9%	-	-	benign(0.183)	tolerated(0.24)	neutral(0.054)	NULL
BBOX1	8424	genome.wustl.edu	37	11	27148962	27148962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003986.2	+1	reviewed	p.L376F	1.000	132	0%	51	41.2%	-	-	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	superfamily_Clavaminate synthase-like
CCDC34	91057	genome.wustl.edu	37	11	27362271	27362271	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030771.1	-1	validated	p.S293	1.000	358	0%	99	31.3%	-	-	-	-	-	NULL
MPPED2	744	genome.wustl.edu	37	11	30435871	30435871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001584.2	-1	reviewed	p.P224S	1.000	107	0%	39	30.8%	-	-	probably_damaging(0.987)	tolerated(0.83)	neutral(0.437)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
DCDC5	100506627	genome.wustl.edu	37	11	30928095	30928095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343054.1	-1	model	p.V607M	0.028	137	0%	28	35.7%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
DCDC5	100506627	genome.wustl.edu	37	11	30938455	30938455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343054.1	-1	model	p.K336N	0.000	289	0%	92	45.7%	-	-	benign(0.011)	tolerated(0.16)	neutral(0.060)	NULL
LOC100288976	100288976	genome.wustl.edu	37	11	31128411	31128411	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343074.1	-1	model	p.E178*	1.000	187	0%	52	38.5%	-	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32635451	32635451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008391.2	-1	validated	p.E805*	0.001	138	0%	93	43%	-	-	-	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32949595	32949595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001076786.1	+1	provisional	p.E8G	1.000	101	0%	25	48%	-	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33047313	33047313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077242.1	+1	validated	p.R61Q	0.526	225	0%	105	44.8%	-	-	possibly_damaging(0.565)	tolerated(0.31)	neutral(0.220)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
TCP11L1	55346	genome.wustl.edu	37	11	33076151	33076151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145541.1	+1	validated	p.R59H	0.994	102	0%	55	27.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CSTF3	1479	genome.wustl.edu	37	11	33106835	33106835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001326.2	-1	reviewed	p.T651N	1.000	57	0%	30	30%	-	-	benign(0.178)	tolerated(0.15)	neutral(0.258)	NULL
CSTF3	1479	genome.wustl.edu	37	11	33127430	33127430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001326.2	-1	reviewed	p.V153M	1.000	114	0%	20	25%	-	-	benign(0.172)	tolerated(0.29)	neutral(0.044)	superfamily_TPR-like
HIPK3	10114	genome.wustl.edu	37	11	33308597	33308597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005734.3	+1	validated	p.K213E	1.000	81	0%	37	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
HIPK3	10114	genome.wustl.edu	37	11	33360956	33360956	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005734.3	+1	validated	p.E497*	1.000	327	0%	139	38.8%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C11orf41	25758	genome.wustl.edu	37	11	33565424	33565424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012194.1	+1	validated	p.F475C	0.000	136	0%	84	36.9%	-	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
LMO2	4005	genome.wustl.edu	37	11	33886300	33886300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005574.3	-1	reviewed	p.Q104H	1.000	14	0%	19	52.6%	-	-	possibly_damaging(0.516)	deleterious(0.03)	deleterious(0.538)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NAT10	55226	genome.wustl.edu	37	11	34163291	34163291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024662.2	+1	validated	p.A913D	1.000	259	0%	228	30.3%	-	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	NULL
EHF	26298	genome.wustl.edu	37	11	34668187	34668187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012153.4	+1	validated	p.A100V	0.989	42	0%	22	31.8%	-	-	probably_damaging(0.991)	tolerated(0.81)	neutral(0.445)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
CD44	960	genome.wustl.edu	37	11	35211502	35211502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000428726	+1	known	p.G164*	0.358	125	0%	36	27.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CD44	960	genome.wustl.edu	37	11	35227666	35227666	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000428726	+1	known	p.Q408P	0.066	127	0.8%	28	21.4%	-	-	-	-	-	NULL
RAG2	5897	genome.wustl.edu	37	11	36614684	36614684	+	Missense_Mutation	SNP	G	G	T	rs35942246	byFrequency	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000536.3	-1	reviewed	p.F345L	0.997	338	0%	171	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RAG2
LRRC4C	57689	genome.wustl.edu	37	11	40137110	40137110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020929.1	-1	validated	p.L245I	1.000	86	0%	22	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
LOC399881	399881	genome.wustl.edu	37	11	43284564	43284564	+	RNA	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040375.2	-1	model	NULL	1.000	60	0%	15	26.7%	-	-	-	-	-	-
LOC399881	399881	genome.wustl.edu	37	11	43284803	43284803	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040375.2	-1	model	NULL	1.000	53	0.000	8	0.750	-	-	-	-	-	-
ALKBH3	221120	genome.wustl.edu	37	11	43905540	43905540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139178.3	+1	validated	p.R64H	0.235	196	0.5%	160	37.5%	-	-	possibly_damaging(0.687)	deleterious(0)	deleterious(0.690)	NULL
ACCS	84680	genome.wustl.edu	37	11	44105064	44105064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127219.1	+1	validated	p.E449K	0.283	93	0%	62	56.5%	-	-	benign(0.083)	tolerated(0.29)	neutral(0.035)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
EXT2	2132	genome.wustl.edu	37	11	44129529	44129529	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000401.3	+1	reviewed	p.T102	1.000	168	0%	58	32.8%	-	-	-	-	-	NULL
ALX4	60529	genome.wustl.edu	37	11	44331507	44331507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021926.3	-1	reviewed	p.A36T	1.000	10	0%	22	50%	-	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
CD82	3732	genome.wustl.edu	37	11	44639775	44639775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002231.3	+1	reviewed	p.P168S	0.000	21	0%	33	18.2%	-	-	benign(0)	tolerated(1)	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CHST1	8534	genome.wustl.edu	37	11	45672411	45672411	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003654.4	-1	validated	p.T21	0.992	31	0%	61	44.3%	-	-	-	-	-	NULL
MAPK8IP1	9479	genome.wustl.edu	37	11	45926754	45926754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005456.2	+1	reviewed	p.V673I	1.000	42	0%	71	38%	-	-	possibly_damaging(0.871)	deleterious(0.02)	deleterious(0.722)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
GYLTL1B	120071	genome.wustl.edu	37	11	45947785	45947785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152312.3	+1	validated	p.A299T	1.000	64	0%	103	33%	-	-	benign(0.345)	deleterious(0.03)	deleterious(0.473)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
GYLTL1B	120071	genome.wustl.edu	37	11	45947885	45947885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152312.3	+1	validated	p.A332V	0.998	81	0%	144	37.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
HARBI1	283254	genome.wustl.edu	37	11	46637623	46637623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173811.3	-1	validated	p.A55	0.001	42	0%	71	40.8%	-	-	-	-	-	NULL
ZNF408	79797	genome.wustl.edu	37	11	46726086	46726086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024741.2	+1	validated	p.S279L	0.001	18	0%	52	21.2%	-	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
F2	2147	genome.wustl.edu	37	11	46745064	46745064	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000506.3	+1	reviewed	p.V185	0.003	32	0%	23	43.5%	-	-	-	-	-	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
F2	2147	genome.wustl.edu	37	11	46748151	46748151	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000506.3	+1	reviewed	p.P326	0.000	59	0%	82	31.7%	-	-	-	-	-	HMMPfam_Thrombin_light
NR1H3	10062	genome.wustl.edu	37	11	47282072	47282072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005693.2	+1	validated	p.C115	0.875	30	0%	59	22%	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MADD	8567	genome.wustl.edu	37	11	47297571	47297571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003682.3	+1	reviewed	p.V261I	0.975	102	0%	168	43.5%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_DENN,HMMSmart_SM00799
MYBPC3	4607	genome.wustl.edu	37	11	47354442	47354442	+	Missense_Mutation	SNP	C	C	T	rs187705120	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000256.3	-1	reviewed	p.R1138H	1.000	52	0%	84	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYBPC3	4607	genome.wustl.edu	37	11	47360227	47360227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000256.3	-1	reviewed	p.L718M	1.000	23	0%	52	40.4%	-	-	possibly_damaging(0.832)	tolerated(0.06)	deleterious(0.639)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
PSMC3	5702	genome.wustl.edu	37	11	47440467	47440467	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002804.4	-1	reviewed	p.T413	0.006	237	0%	393	32.6%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
AGBL2	79841	genome.wustl.edu	37	11	47701590	47701590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024783.2	-1	validated	p.L651M	1.000	100	0%	70	44.3%	-	-	benign(0.362)	deleterious(0.01)	deleterious(0.521)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
PTPRJ	5795	genome.wustl.edu	37	11	48161067	48161067	+	Missense_Mutation	SNP	G	G	A	rs181029182	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002843.3	+1	reviewed	p.E728K	0.009	74	0%	41	39%	-	-	possibly_damaging(0.748)	tolerated(0.36)	neutral(0.295)	HMMSmart_FN3
OR4C2P	119750	genome.wustl.edu	37	11	48442266	48442266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000428162	+1	known	p.Q157H	0.784	77	0%	20	50%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC340970	340970	genome.wustl.edu	37	11	49010917	49010917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343062.1	-1	model	p.V172M	0.183	133	0%	15	33.3%	-	-	-	-	-	NULL
ENSG00000219061	0	genome.wustl.edu	37	11	49860156	49860156	+	Nonsense_Mutation	SNP	G	G	A	rs181095702	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000405176	-1	known	p.Q147*	0.003	80	0%	22	45.5%	-	-	-	-	-	NULL
OR4C12	283093	genome.wustl.edu	37	11	50003294	50003294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005270.2	-1	validated	p.F248L	0.000	152	0%	56	35.7%	-	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51411536	51411536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005272.3	-1	validated	p.R287I	0.885	83	0%	24	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
ENSG00000166007	0	genome.wustl.edu	37	11	55059633	55059633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000309470	-1	known	p.F426C	0.022	180	0%	24	41.7%	-	-	-	-	-	HMMPfam_SPRY
OR4A16	81327	genome.wustl.edu	37	11	55111485	55111485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005274.1	+1	provisional	p.T270I	0.000	310	0.3%	62	38.7%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_7tm_1,superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55406325	55406325	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004124.1	+1	provisional	p.V164	0.002	175	0%	48	43.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000186886	0	genome.wustl.edu	37	11	55493938	55493938	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000333984	+1	known	p.E44	0.000	112	0%	38	36.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPRYD5	84767	genome.wustl.edu	37	11	55653066	55653066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032681.3	+1	validated	p.E54D	0.378	81	0%	18	27.8%	-	-	benign(0.022)	tolerated(0.6)	neutral(0.005)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
OR10AG1	282770	genome.wustl.edu	37	11	55735728	55735728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005491.1	-1	provisional	p.R71I	0.219	86	0%	35	42.9%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761349	55761349	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003697.1	-1	provisional	p.F251	0.015	80	0%	32	40.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798036	55798036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001921.1	+1	provisional	p.L48I	0.001	101	0%	28	28.6%	-	-	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798761	55798761	+	Missense_Mutation	SNP	T	T	G	rs61889974	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001921.1	+1	provisional	p.I289M	0.341	85	0%	44	34.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H2	390151	genome.wustl.edu	37	11	55872622	55872622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005200.1	+1	provisional	p.I35T	0.147	341	0%	104	35.6%	-	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	superfamily_SSF81321
OR8H2	390151	genome.wustl.edu	37	11	55873241	55873241	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005200.1	+1	provisional	p.C241	0.520	239	0%	64	29.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8J3	81168	genome.wustl.edu	37	11	55904703	55904703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004064.1	-1	provisional	p.F164L	0.005	253	0%	190	35.8%	-	-	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	HMMPfam_7tm_1,superfamily_SSF81321
OR8U1	219417	genome.wustl.edu	37	11	56143733	56143733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005204.1	+1	provisional	p.L212	0.000	266	0%	34	32.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AR1	219493	genome.wustl.edu	37	11	56431383	56431383	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004730.1	+1	provisional	p.S74	0.880	253	0%	73	43.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LRRC55	219527	genome.wustl.edu	37	11	56954953	56954953	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005210.2	+1	validated	p.*342	0.975	57	0%	63	33.3%	-	-	-	-	-	NULL
SERPING1	710	genome.wustl.edu	37	11	57381994	57381994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000062.2	+1	reviewed	p.L481	1.000	35	0%	33	24.2%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin
BTBD18	643376	genome.wustl.edu	37	11	57512733	57512733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145101.1	-1	validated	p.R338W	0.981	83	0%	128	46.9%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
OR9Q1	219956	genome.wustl.edu	37	11	57947358	57947358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005212.3	+1	validated	p.A148T	0.974	136	0%	42	31%	-	-	benign(0.015)	tolerated(0.18)	neutral(0.057)	HMMPfam_7tm_1,superfamily_SSF81321
OR1S1	219959	genome.wustl.edu	37	11	57982610	57982610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004458.1	+1	validated	p.A132T	1.000	322	0%	108	41.7%	-	-	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_7tm_1,superfamily_SSF81321
OR10Q1	219960	genome.wustl.edu	37	11	57995529	57995529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004471.2	-1	validated	p.E273D	0.011	81	0%	84	33.3%	-	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_7tm_1,superfamily_SSF81321
OR10Q1	219960	genome.wustl.edu	37	11	57995561	57995561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004471.2	-1	validated	p.V263M	0.923	56	0%	66	31.8%	-	-	probably_damaging(0.996)	tolerated(0.33)	deleterious(0.486)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B12	390191	genome.wustl.edu	37	11	58207349	58207349	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004733.2	-1	validated	p.Y92	0.000	104	0%	44	31.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LPXN	9404	genome.wustl.edu	37	11	58295078	58295078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143995.1	-1	reviewed	p.T342N	0.997	65	0%	53	39.6%	-	-	benign(0.129)	tolerated(0.11)	neutral(0.283)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
LPXN	9404	genome.wustl.edu	37	11	58317529	58317529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143995.1	-1	reviewed	p.R198W	1.000	72	1.4%	17	29.4%	-	-	possibly_damaging(0.812)	tolerated(0.06)	deleterious(0.628)	HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716
ZFP91	80829	genome.wustl.edu	37	11	58377331	58377331	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053023.3	+1	reviewed	p.D133	0.003	110	0%	28	50%	-	-	-	-	-	NULL
FAM111B	374393	genome.wustl.edu	37	11	58893158	58893158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198947.3	+1	validated	p.F530L	0.012	55	0%	18	38.9%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	superfamily_Trypsin-like serine proteases
MPEG1	219972	genome.wustl.edu	37	11	58980314	58980314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039396.1	-1	validated	p.L9F	0.002	43	0%	21	19%	-	-	benign(0.046)	deleterious(0)	neutral(0.447)	NULL
OR4D11	219986	genome.wustl.edu	37	11	59271392	59271392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004706.1	+1	provisional	p.L115P	1.000	288	0%	127	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D9	390199	genome.wustl.edu	37	11	59282433	59282433	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004711.1	+1	provisional	p.G16	0.027	167	0%	56	39.3%	-	-	-	-	-	superfamily_SSF81321
PATL1	219988	genome.wustl.edu	37	11	59416982	59416982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152716.2	-1	validated	p.I562M	0.734	209	0%	189	40.2%	-	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_PAT1
OR10V1	390201	genome.wustl.edu	37	11	59480550	59480550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005324.1	-1	provisional	p.S257G	0.995	79	0%	43	14%	-	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_7tm_1,superfamily_SSF81321
OR10V1	390201	genome.wustl.edu	37	11	59480977	59480977	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005324.1	-1	provisional	p.V114	0.100	100	0%	41	22%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10V1	390201	genome.wustl.edu	37	11	59481028	59481028	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005324.1	-1	provisional	p.G97	0.671	82	0%	47	46.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MS4A4E	643680	genome.wustl.edu	37	11	59976150	59976150	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_931886.3	-1	model	p.V192	0.000	401	0%	231	14.3%	-	-	-	-	-	HMMPfam_CD20
MS4A7	58475	genome.wustl.edu	37	11	60160219	60160219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021201.4	+1	reviewed	p.S203F	0.007	243	0%	49	32.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60183286	60183286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032597.3	+1	validated	p.A282V	0.002	81	0%	28	39.3%	-	-	benign(0.02)	tolerated(1)	neutral(0.001)	NULL
MS4A13	503497	genome.wustl.edu	37	11	60296873	60296873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012417.2	+1	validated	p.F114L	0.000	241	0%	233	37.8%	-	-	possibly_damaging(0.478)	tolerated(0.68)	neutral(0.160)	HMMPfam_CD20
MS4A8B	83661	genome.wustl.edu	37	11	60468341	60468341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031457.1	+1	reviewed	p.S3L	0.003	154	0%	66	30.3%	-	-	benign(0.429)	tolerated(0.08)	neutral(0.440)	NULL
ZP1	22917	genome.wustl.edu	37	11	60640684	60640684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207341.2	+1	validated	p.A388S	0.570	101	0%	111	28.8%	-	-	possibly_damaging(0.87)	deleterious(0.04)	deleterious(0.687)	HMMPfam_Zona_pellucida,HMMSmart_ZP
PRPF19	27339	genome.wustl.edu	37	11	60665739	60665739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014502.4	-1	validated	p.R382H	1.000	45	0%	31	45.2%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PRPF19	27339	genome.wustl.edu	37	11	60666025	60666025	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014502.4	-1	validated	p.I376	1.000	79	0%	71	45.1%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TMEM109	79073	genome.wustl.edu	37	11	60687345	60687345	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024092.2	+1	validated	p.S60	0.005	73	0%	152	31.6%	-	-	-	-	-	NULL
CD5	921	genome.wustl.edu	37	11	60889271	60889271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014207.3	+1	validated	p.A332T	0.000	39	0%	74	29.7%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD5	921	genome.wustl.edu	37	11	60892537	60892537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014207.3	+1	validated	p.R438Q	1.000	100	0%	133	35.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CD5	921	genome.wustl.edu	37	11	60893244	60893244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014207.3	+1	validated	p.R474H	0.000	58	0%	104	10.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS37C	55048	genome.wustl.edu	37	11	60900808	60900808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017966.4	-1	validated	p.E89D	1.000	44	0%	51	35.3%	-	-	benign(0.043)	tolerated(1)	neutral(0.003)	HMMPfam_Mod_r
DDB1	1642	genome.wustl.edu	37	11	61070063	61070063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001923.3	-1	validated	p.G1035S	1.000	93	0%	131	13%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSF_A
DDB1	1642	genome.wustl.edu	37	11	61094352	61094352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001923.3	-1	validated	p.R188Q	1.000	78	0%	85	25.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CYBASC3	220002	genome.wustl.edu	37	11	61121395	61121395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153611.4	-1	validated	p.A85V	0.001	92	0%	93	25.8%	-	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	HMMPfam_Cytochrom_B561,HMMSmart_B561
TMEM138	51524	genome.wustl.edu	37	11	61133611	61133611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016464.4	+1	validated	p.F75V	0.953	298	0%	255	38%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
PPP1R32	220004	genome.wustl.edu	37	11	61253293	61253293	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145017.2	+1	validated	p.I199	0.335	42	0%	60	48.3%	-	-	-	-	-	NULL
SCGB1D4	404552	genome.wustl.edu	37	11	62065064	62065064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206998.1	-1	provisional	p.A41V	0.000	123	0.8%	89	32.6%	-	-	benign(0)	tolerated(1)	-	superfamily_Uteroglobin-like
AHNAK	79026	genome.wustl.edu	37	11	62289747	62289747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001620.1	-1	validated	p.D4048N	1.000	247	0%	156	30.8%	-	-	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62296418	62296418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001620.1	-1	validated	p.A1824V	0.393	217	0%	220	40.5%	-	-	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62302487	62302487	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001620.1	-1	validated	p.S110	0.466	23	0%	39	51.3%	-	-	-	-	-	NULL
EEF1G	1937	genome.wustl.edu	37	11	62327559	62327559	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001404.4	-1	reviewed	p.G379	1.000	84	0%	76	31.6%	-	-	-	-	-	HMMPfam_EF1G,superfamily_eEF1-gamma domain
TUT1	64852	genome.wustl.edu	37	11	62346034	62346034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022830.2	-1	reviewed	p.R387W	1.000	47	0%	50	30%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nucleotidyltransferase
ROM1	6094	genome.wustl.edu	37	11	62381290	62381290	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000327.3	+1	reviewed	p.G179	0.978	49	0%	104	43.3%	-	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CHRM1	1128	genome.wustl.edu	37	11	62677418	62677418	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000738.2	-1	reviewed	p.V385	1.000	65	0%	70	32.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC22A9	114571	genome.wustl.edu	37	11	63138660	63138660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080866.2	+1	validated	p.F152L	0.671	264	0%	62	33.9%	-	-	benign(0.086)	tolerated(0.05)	neutral(0.352)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HRASLS5	117245	genome.wustl.edu	37	11	63257803	63257803	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054108.3	-1	validated	p.E61*	0.883	125	0%	157	26.8%	-	-	-	-	-	NULL
RTN3	10313	genome.wustl.edu	37	11	63488437	63488437	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201428.1	+1	validated	p.V802	0.862	37	0%	32	31.2%	-	-	-	-	-	NULL
C11orf84	144097	genome.wustl.edu	37	11	63586309	63586309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138471.1	+1	predicted	p.A257T	0.901	76	0%	109	11.9%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
RCOR2	283248	genome.wustl.edu	37	11	63681556	63681556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173587.3	-1	validated	p.R254Q	0.985	49	0%	95	32.6%	-	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63987455	63987455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178443.2	+1	reviewed	p.P395H	0.038	33	0%	99	30.3%	-	-	benign(0.091)	tolerated(0.64)	neutral(0.009)	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,HMMSmart_SM00295,superfamily_PH domain-like
TRPT1	83707	genome.wustl.edu	37	11	63992292	63992292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033678.3	-1	validated	p.N103I	0.998	40	0%	79	12.7%	-	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMPfam_PTS_2-RNA
KCNK4	50801	genome.wustl.edu	37	11	64065090	64065090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033310.2	+1	reviewed	p.T209M	1.000	72	0%	138	31.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
CCDC88B	283234	genome.wustl.edu	37	11	64121208	64121208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000301897	+1	known	p.A4V	0.180	46	0%	79	29.1%	-	-	unknown(0)	-	-	NULL
CCDC88B	283234	genome.wustl.edu	37	11	64122780	64122780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032251.5	+1	reviewed	p.S1405N	0.914	17	0%	57	43.9%	-	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64435006	64435006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015080.2	-1	reviewed	p.A505V	0.680	37	0%	57	24.6%	-	-	possibly_damaging(0.515)	tolerated(0.51)	neutral(0.182)	superfamily_Concanavalin A-like lectins/glucanases
PYGM	5837	genome.wustl.edu	37	11	64514146	64514146	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005609.2	-1	reviewed	p.P838	0.749	93	0%	183	37.2%	-	-	-	-	-	NULL
SF1	7536	genome.wustl.edu	37	11	64533057	64533057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000422298	-1	known	p.E591D	1.000	14	0%	48	31.2%	-	-	-	-	-	NULL
MAP4K2	5871	genome.wustl.edu	37	11	64563988	64563988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004579.2	-1	reviewed	p.N537T	1.000	72	0%	124	36.3%	-	-	benign(0.068)	deleterious(0.02)	neutral(0.388)	HMMPfam_CNH,HMMSmart_CNH
MEN1	4221	genome.wustl.edu	37	11	64575407	64575407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000244.3	-1	reviewed	p.E209K	1.000	40	0%	85	25.9%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_Menin
CDC42BPG	55561	genome.wustl.edu	37	11	64594813	64594813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017525.2	-1	validated	p.R1403H	1.000	46	0%	119	32.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ATG2A	23130	genome.wustl.edu	37	11	64669629	64669629	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418259	-1	known	p.V1112I	1.000	58	0%	126	37.3%	-	-	-	-	-	NULL
ATG2A	23130	genome.wustl.edu	37	11	64679717	64679717	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418259	-1	known	p.R111*	0.000	25	0%	84	40.5%	-	-	-	-	-	NULL
PPP2R5B	5526	genome.wustl.edu	37	11	64695613	64695613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006244.3	+1	reviewed	p.Q192K	1.000	226	0%	411	34.3%	-	-	benign(0.089)	deleterious(0.01)	neutral(0.412)	HMMPfam_B56
GPHA2	170589	genome.wustl.edu	37	11	64702252	64702252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130769.3	-1	validated	p.R128H	1.000	27	0%	57	14%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NAALADL1	10004	genome.wustl.edu	37	11	64813875	64813875	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427272	-1	known	p.E575*	0.000	102	0%	197	39.1%	-	-	-	-	-	NULL
ZFPL1	7542	genome.wustl.edu	37	11	64853916	64853916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006782.3	+1	validated	p.R82C	1.000	68	0%	129	49.6%	-	-	probably_damaging(0.974)	tolerated(0.17)	deleterious(0.475)	HMMSmart_RING
LOC100287960	100287960	genome.wustl.edu	37	11	64913304	64913304	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343095.1	-1	model	p.K78T	1.000	51	0%	26	34.6%	-	-	-	-	-	HMMPfam_HIG_1_N
CAPN1	823	genome.wustl.edu	37	11	64956206	64956206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005186.2	+1	reviewed	p.R385Q	1.000	27	0%	47	53.2%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
SLC22A20	440044	genome.wustl.edu	37	11	65009514	65009514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454680	+1	known	p.S542Y	0.194	76	0%	103	48.5%	-	-	-	-	-	NULL
CDC42EP2	10435	genome.wustl.edu	37	11	65088708	65088708	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006779.2	+1	reviewed	p.I113	0.497	35	0%	72	34.7%	-	-	-	-	-	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65351829	65351829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099409.1	+1	validated	p.A1071T	1.000	46	0%	67	29.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
KAT5	10524	genome.wustl.edu	37	11	65480932	65480932	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182710.1	+1	reviewed	p.P166	1.000	44	0%	55	40%	-	-	-	-	-	NULL
KAT5	10524	genome.wustl.edu	37	11	65481258	65481258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182710.1	+1	reviewed	p.R210H	1.000	99	0%	179	35.2%	-	-	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
CATSPER1	117144	genome.wustl.edu	37	11	65788288	65788288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053054.3	-1	reviewed	p.A641T	0.976	50	0%	68	39.7%	-	-	benign(0.214)	tolerated(0.48)	neutral(0.032)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CATSPER1	117144	genome.wustl.edu	37	11	65793538	65793538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053054.3	-1	reviewed	p.V105I	0.000	104	0%	148	42.6%	-	-	benign(0.051)	deleterious(0.01)	neutral(0.409)	NULL
CATSPER1	117144	genome.wustl.edu	37	11	65793655	65793655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053054.3	-1	reviewed	p.F66V	0.001	183	0%	237	34.6%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
GAL3ST3	89792	genome.wustl.edu	37	11	65810563	65810563	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033036.2	-1	reviewed	p.L237	0.556	6	0.000	12	0.500	-	-	-	-	-	HMMPfam_Gal-3-0_sulfotr
KLC2	64837	genome.wustl.edu	37	11	66029433	66029433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134775.1	+1	validated	p.A150V	0.348	37	0%	70	31.4%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_Rab5-bind
B3GNT1	11041	genome.wustl.edu	37	11	66113999	66113999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006876.2	-1	reviewed	p.E340K	1.000	25	0%	47	40.4%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
LOC100128074	100128074	genome.wustl.edu	37	11	66114012	66114012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001716221.1	+1	model	p.H83Y	1.000	24	0%	51	27.5%	-	-	-	-	-	NULL
SLC29A2	3177	genome.wustl.edu	37	11	66133642	66133642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001532.2	-1	validated	p.A310T	1.000	79	0%	112	33%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	HMMPfam_Nucleoside_tran
NPAS4	266743	genome.wustl.edu	37	11	66192630	66192630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178864.3	+1	validated	p.L757M	1.000	22	0%	53	28.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PELI3	246330	genome.wustl.edu	37	11	66240744	66240744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145065.2	+1	validated	p.F163	0.956	31	0%	59	42.4%	-	-	-	-	-	HMMPfam_Pellino
BBS1	582	genome.wustl.edu	37	11	66290969	66290969	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024649.4	+1	reviewed	p.Q291	1.000	79	0%	88	40.9%	-	-	-	-	-	NULL
CCS	9973	genome.wustl.edu	37	11	66372982	66372982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005125.1	+1	reviewed	p.S197T	1.000	123	0%	115	40.9%	-	-	benign(0.283)	tolerated(0.12)	neutral(0.348)	HMMPfam_Sod_Cu,superfamily_SOD_Cu_Zn
RBM14	10432	genome.wustl.edu	37	11	66392337	66392337	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006328.3	+1	validated	p.S330	1.000	57	0%	75	37.3%	-	-	-	-	-	NULL
RBM14	10432	genome.wustl.edu	37	11	66393080	66393080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006328.3	+1	validated	p.R578H	1.000	23	0%	29	44.8%	-	-	unknown(0)	deleterious(0.01)	-	NULL
RBM4B	83759	genome.wustl.edu	37	11	66444394	66444394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031492.2	-1	provisional	p.R53C	0.999	252	0%	297	12.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SPTBN2	6712	genome.wustl.edu	37	11	66468602	66468602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006946.2	-1	reviewed	p.D990N	1.000	6	0.000	13	0.308	-	-	possibly_damaging(0.933)	tolerated(0.07)	deleterious(0.698)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66472362	66472362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006946.2	-1	reviewed	p.E795D	1.000	14	0%	29	41.4%	-	-	possibly_damaging(0.851)	tolerated(0.07)	deleterious(0.646)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PC	5091	genome.wustl.edu	37	11	66616434	66616434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000920.3	-1	reviewed	p.R1158H	0.997	27	0%	66	45.5%	-	-	benign(0.173)	deleterious(0.01)	neutral(0.422)	HMMPfam_Biotin_lipoyl,superfamily_Hybrid_motif
PC	5091	genome.wustl.edu	37	11	66617918	66617918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000920.3	-1	reviewed	p.V831M	1.000	31	0%	83	47%	-	-	probably_damaging(0.957)	tolerated(0.18)	neutral(0.457)	superfamily_SSF51569
KDM2A	22992	genome.wustl.edu	37	11	67021049	67021049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012308.2	+1	reviewed	p.R1020W	1.000	70	0%	93	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00367,superfamily_RNI-like
SSH3	54961	genome.wustl.edu	37	11	67076907	67076907	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017857.3	+1	validated	p.N367	1.000	36	0%	96	32.3%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
PITPNM1	9600	genome.wustl.edu	37	11	67263772	67263772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004910.2	-1	validated	p.A732T	0.998	31	0%	64	23.4%	-	-	benign(0.206)	deleterious(0.02)	neutral(0.403)	HMMPfam_DDHD
PITPNM1	9600	genome.wustl.edu	37	11	67269425	67269425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004910.2	-1	validated	p.T183M	0.249	29	0%	81	34.6%	-	-	possibly_damaging(0.909)	tolerated(0.11)	deleterious(0.633)	HMMPfam_IP_trans,superfamily_Bet v1-like
NDUFS8	4728	genome.wustl.edu	37	11	67803783	67803783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002496.3	+1	reviewed	p.D146N	1.000	25	0%	44	29.5%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Fer4,superfamily_alpha-helical ferredoxin
TCIRG1	10312	genome.wustl.edu	37	11	67810906	67810906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006019.2	+1	reviewed	p.R191H	0.992	8	0.000	20	0.300	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V_ATPase_I
LRP5	4041	genome.wustl.edu	37	11	68125316	68125316	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002335.2	+1	reviewed	e3+1	1.000	37	0%	56	51.8%	-	-	-	-	-	-
LRP5	4041	genome.wustl.edu	37	11	68213918	68213918	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002335.2	+1	reviewed	p.P1501	0.995	42	0%	105	41%	-	-	-	-	-	NULL
CPT1A	1374	genome.wustl.edu	37	11	68549297	68549297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001876.3	-1	reviewed	p.P432S	1.000	232	0%	313	38%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1A	1374	genome.wustl.edu	37	11	68562300	68562300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001876.3	-1	reviewed	p.R284H	0.948	196	0%	228	39%	-	-	benign(0.02)	tolerated(0.13)	neutral(0.254)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
IGHMBP2	3508	genome.wustl.edu	37	11	68682403	68682403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002180.2	+1	reviewed	p.I275T	0.992	48	0%	95	30.5%	-	-	benign(0.366)	deleterious(0.01)	deleterious(0.522)	HMMSmart_SM00382,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGHMBP2	3508	genome.wustl.edu	37	11	68707091	68707091	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002180.2	+1	reviewed	p.N958	0.891	15	0%	30	40%	-	-	-	-	-	NULL
TPCN2	219931	genome.wustl.edu	37	11	68846006	68846006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000356782	+1	known	p.S373L	0.991	114	0%	192	30.2%	-	-	unknown(0)	deleterious(0)	-	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70208490	70208490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003626.2	+1	reviewed	p.R921C	1.000	54	0%	47	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
SHANK2	22941	genome.wustl.edu	37	11	70507760	70507760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012309.3	-1	reviewed	p.T38M	1.000	105	0%	178	12.9%	-	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_PDZ,superfamily_PDZ
INPPL1	3636	genome.wustl.edu	37	11	71944788	71944788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001567.3	+1	reviewed	p.G738R	1.000	285	0%	416	32.9%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_Exo_endo_phos
PDE2A	5138	genome.wustl.edu	37	11	72290049	72290049	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002599.3	-1	validated	p.G787	0.993	199	0%	258	37.6%	-	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
ARAP1	116985	genome.wustl.edu	37	11	72421008	72421008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040118.2	-1	reviewed	p.G477D	1.000	102	0%	152	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00233,superfamily_PH domain-like
ARAP1	116985	genome.wustl.edu	37	11	72438077	72438077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040118.2	-1	reviewed	p.V33M	0.987	11	0%	21	42.9%	-	-	benign(0.085)	tolerated(0.14)	neutral(0.256)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
ATG16L2	89849	genome.wustl.edu	37	11	72538271	72538271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033388.1	+1	validated	p.V469M	0.994	91	0%	143	38.5%	-	-	benign(0.358)	tolerated(0.14)	neutral(0.363)	HMMSmart_SM00320,superfamily_WD40 repeat-like
P2RY2	5029	genome.wustl.edu	37	11	72945825	72945825	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002564.2	+1	reviewed	p.F207	0.375	51	0%	89	37.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF17	9828	genome.wustl.edu	37	11	73066666	73066666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014786.3	+1	validated	p.A1181V	1.000	124	0.8%	210	37.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
P4HA3	283208	genome.wustl.edu	37	11	74013466	74013466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182904.3	-1	reviewed	p.S172I	0.977	65	0%	42	11.9%	-	-	benign(0.055)	deleterious(0.02)	neutral(0.387)	superfamily_TPR-like
NEU3	10825	genome.wustl.edu	37	11	74716544	74716544	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006656.5	+1	reviewed	p.G131	0.000	90	0%	58	32.8%	-	-	-	-	-	superfamily_Sialidase
RPS3	6188	genome.wustl.edu	37	11	75113455	75113455	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005.3	+1	reviewed	p.L105	1.000	93	0%	126	38.9%	-	-	possibly_damaging(0.93)	tolerated(0.27)	neutral(0.410)	HMMPfam_Ribosomal_S3_C,superfamily_Ribosomal protein S3 C-terminal domain
GDPD5	81544	genome.wustl.edu	37	11	75155523	75155523	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030792.6	-1	validated	p.T244	0.021	45	0%	73	28.8%	-	-	-	-	-	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
SERPINH1	871	genome.wustl.edu	37	11	75280204	75280204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001235.2	+1	reviewed	p.T314	1.000	53	0%	91	11%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
WNT11	7481	genome.wustl.edu	37	11	75917396	75917396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004626.2	-1	reviewed	p.T19I	1.000	4	0.000	9	0.556	-	-	benign(0.024)	tolerated(0.49)	neutral(0.011)	NULL
LRRC32	2615	genome.wustl.edu	37	11	76370835	76370835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128922.1	-1	reviewed	p.R601H	0.659	44	0%	67	29.9%	-	-	benign(0.002)	tolerated(0.48)	neutral(0.011)	superfamily_SSF52058
OMP	4975	genome.wustl.edu	37	11	76814239	76814239	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006189.1	+1	reviewed	p.N118	0.814	26	0%	57	35.1%	-	-	-	-	-	HMMPfam_Olfactory_mark,superfamily_Olfactory_marker
MYO7A	4647	genome.wustl.edu	37	11	76871246	76871246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000260.3	+1	reviewed	p.R373H	1.000	25	0%	41	19.5%	-	-	benign(0.108)	tolerated(0.14)	neutral(0.258)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7A	4647	genome.wustl.edu	37	11	76901861	76901861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000260.3	+1	reviewed	p.K1290N	1.000	44	0%	82	28%	-	-	possibly_damaging(0.756)	tolerated(0.12)	deleterious(0.540)	HMMPfam_FERM_N,HMMSmart_SM00295
MYO7A	4647	genome.wustl.edu	37	11	76917166	76917166	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000260.3	+1	reviewed	p.P1887	0.289	61	0%	118	33.1%	-	-	-	-	-	HMMPfam_MyTH4,HMMSmart_SM00139
CLNS1A	1207	genome.wustl.edu	37	11	77336089	77336089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001293.2	-1	reviewed	p.E131K	1.000	136	0%	75	29.3%	-	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	NULL
RSF1	51773	genome.wustl.edu	37	11	77378483	77378483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016578.3	-1	validated	p.R1269W	0.993	57	0%	40	50%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
C11orf67	28971	genome.wustl.edu	37	11	77553600	77553600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024684.2	+1	predicted	p.N20D	0.953	88	0%	45	44.4%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_DUF498,superfamily_Hypothetical protein MT938 (MTH938)
ALG8	79053	genome.wustl.edu	37	11	77850596	77850596	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024079.4	-1	reviewed	p.W13*	0.998	19	0%	41	22%	-	-	-	-	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78381156	78381156	+	Silent	SNP	G	G	A	rs139879711	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.N2078	0.202	89	0%	104	39.4%	-	-	-	-	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78413137	78413137	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.A1507	0.774	112	0%	61	41%	-	-	-	-	-	superfamily_SSF101898,superfamily_TolB_C
ODZ4	26011	genome.wustl.edu	37	11	78433937	78433937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.E1192D	1.000	65	0%	51	37.3%	-	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78443525	78443525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.R992C	1.000	113	0%	72	25%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78523252	78523252	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.I631	0.968	65	0%	36	38.9%	-	-	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196
ODZ4	26011	genome.wustl.edu	37	11	78614562	78614562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098816.2	-1	validated	p.P167L	0.994	24	0%	46	37%	-	-	benign(0.079)	tolerated(0.11)	neutral(0.277)	HMMPfam_Ten_N
ANKRD42	338699	genome.wustl.edu	37	11	82936081	82936081	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182603.2	+1	validated	p.D229	0.000	153	0%	66	27.3%	-	-	-	-	-	superfamily_Ankyrin repeat
ANKRD42	338699	genome.wustl.edu	37	11	82951967	82951967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182603.2	+1	validated	p.D368Y	1.000	161	0%	86	11.6%	-	-	possibly_damaging(0.929)	tolerated(0.07)	deleterious(0.695)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85416014	85416014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206927.2	-1	reviewed	p.R1059W	1.000	297	0%	135	34.1%	-	-	possibly_damaging(0.95)	tolerated(0.15)	deleterious(0.635)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PICALM	8301	genome.wustl.edu	37	11	85712096	85712096	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007166.2	-1	validated	p.A333	0.993	378	0%	147	30.6%	-	-	-	-	-	NULL
PRSS23	11098	genome.wustl.edu	37	11	86518778	86518778	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007173.4	+1	validated	p.T31	0.004	166	0%	123	35%	-	-	-	-	-	NULL
TMEM135	65084	genome.wustl.edu	37	11	86749176	86749176	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022918.3	+1	validated	p.I30N	1.000	39	0%	98	34.7%	-	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	NULL
GRM5	2915	genome.wustl.edu	37	11	88258556	88258556	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143831.2	-1	reviewed	p.L883	1.000	162	0%	61	31.1%	-	-	-	-	-	NULL
TYR	7299	genome.wustl.edu	37	11	88924505	88924505	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000372.4	+1	reviewed	p.E319*	1.000	96	0%	24	37.5%	-	-	-	-	-	HMMPfam_Tyrosinase,superfamily_Di-copper centre-containing domain
TYR	7299	genome.wustl.edu	37	11	89018099	89018099	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000372.4	+1	reviewed	p.D448V	1.000	64	0%	11	45.5%	-	-	benign(0.108)	tolerated(0.22)	neutral(0.051)	superfamily_Di-copper centre-containing domain
NOX4	50507	genome.wustl.edu	37	11	89059869	89059869	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026571.1	-1	reviewed	NULL	0.992	114	0%	44	31.8%	-	-	-	-	-	-
ENSG00000234376	0	genome.wustl.edu	37	11	89486920	89486920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000411859	-1	known	p.T72I	0.063	324	0%	158	28.5%	-	-	-	-	-	NULL
ENSG00000204456	0	genome.wustl.edu	37	11	89501364	89501364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375974	-1	known	p.H39Q	0.001	75	0%	37	24.3%	-	-	-	-	-	NULL
TRIM64B	642446	genome.wustl.edu	37	11	89604290	89604290	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436168	-1	known	e9-1	0.001	99	0%	73	26%	-	-	-	-	-	-
ENSG00000204449	0	genome.wustl.edu	37	11	89806118	89806118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000432771	+1	known	p.G301R	0.000	184	0%	71	15.5%	-	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
CHORDC1	26973	genome.wustl.edu	37	11	89938724	89938724	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012124.2	-1	validated	p.Y191*	0.997	79	0%	33	39.4%	-	-	-	-	-	HMMPfam_CHORD
CHORDC1	26973	genome.wustl.edu	37	11	89951314	89951314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012124.2	-1	validated	p.D35N	1.000	125	0%	70	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CHORD
ENSG00000214391	0	genome.wustl.edu	37	11	90016597	90016597	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000318973	+1	known	p.L258	0.998	326	0%	151	31.8%	-	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
ENSG00000214391	0	genome.wustl.edu	37	11	90016974	90016974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000318973	+1	known	p.A375T	1.000	195	0%	91	27.5%	-	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
FAT3	120114	genome.wustl.edu	37	11	92087083	92087083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008781.2	+1	validated	p.A602V	1.000	75	0%	15	66.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92087515	92087515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008781.2	+1	validated	p.L746P	1.000	95	0%	16	25%	-	-	possibly_damaging(0.893)	tolerated(0.07)	deleterious(0.671)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532904	92532904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008781.2	+1	validated	p.V2242G	1.000	143	0%	33	24.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92616097	92616097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008781.2	+1	validated	p.A4159T	1.000	76	0%	135	40%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
FAT3	120114	genome.wustl.edu	37	11	92616259	92616259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008781.2	+1	validated	p.R4213C	0.981	27	0%	39	43.6%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC36A4	120103	genome.wustl.edu	37	11	92881964	92881964	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152313.2	-1	provisional	p.F418	0.426	44	0%	13	30.8%	-	-	-	-	-	HMMPfam_Aa_trans
CCDC67	159989	genome.wustl.edu	37	11	93097388	93097388	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181645.3	+1	validated	p.V120	0.038	109	0%	45	22.2%	-	-	-	-	-	NULL
C11orf75	56935	genome.wustl.edu	37	11	93212330	93212330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020179.2	-1	validated	p.K9R	1.000	149	0%	157	29.9%	-	-	unknown(0)	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93417234	93417234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033395.1	+1	validated	p.L352V	0.000	88	0%	39	30.8%	-	-	possibly_damaging(0.875)	tolerated(0.12)	deleterious(0.601)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93460414	93460414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033395.1	+1	validated	p.P2258S	0.908	107	0%	35	37.1%	-	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
MED17	9440	genome.wustl.edu	37	11	93523750	93523750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004268.4	+1	reviewed	p.T143M	0.982	64	0%	51	35.3%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_DUF2364
GPR83	10888	genome.wustl.edu	37	11	94113863	94113863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016540.3	-1	validated	p.A242T	0.998	152	0%	79	10.1%	-	-	benign(0.004)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_SSF81321
AMOTL1	154810	genome.wustl.edu	37	11	94592756	94592756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130847.2	+1	reviewed	p.R671W	0.987	98	0%	70	11.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM4D	55693	genome.wustl.edu	37	11	94731584	94731584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018039.2	+1	validated	p.P350S	0.094	30	0%	28	32.1%	-	-	benign(0.075)	deleterious(0.05)	neutral(0.350)	NULL
KDM4DL	390245	genome.wustl.edu	37	11	94760216	94760216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000450979	+1	known	p.D499Y	0.000	73	0%	53	49.1%	-	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
MAML2	84441	genome.wustl.edu	37	11	95825380	95825380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032427.1	-1	validated	p.Q605	0.006	201	12.4%	144	22.2%	-	-	-	-	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96104238	96104238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024725.3	-1	validated	p.R383H	0.976	145	0%	56	32.1%	-	-	possibly_damaging(0.522)	deleterious(0.01)	deleterious(0.582)	NULL
CCDC82	79780	genome.wustl.edu	37	11	96117179	96117179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024725.3	-1	validated	p.E245*	0.993	182	0%	122	38.5%	-	-	-	-	-	NULL
PGR	5241	genome.wustl.edu	37	11	100920786	100920786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000926.4	-1	reviewed	p.R788W	1.000	94	0%	26	34.6%	-	-	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PGR	5241	genome.wustl.edu	37	11	100999720	100999720	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000926.4	-1	reviewed	p.L28	0.000	4	0.000	19	0.368	-	-	-	-	-	HMMPfam_Prog_receptor
ANGPTL5	253935	genome.wustl.edu	37	11	101776492	101776492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178127.4	-1	validated	p.D110N	1.000	231	0%	161	37.3%	-	-	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	NULL
C11orf70	85016	genome.wustl.edu	37	11	101953880	101953880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032930.1	+1	predicted	p.R214C	0.995	134	0%	117	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIRC3	330	genome.wustl.edu	37	11	102206702	102206702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001165.3	+1	reviewed	p.L444V	0.484	85	0%	28	46.4%	-	-	benign(0.011)	tolerated(0.25)	neutral(0.037)	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like,superfamily_SSF57924
MMP10	4319	genome.wustl.edu	37	11	102647027	102647027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002425.2	-1	reviewed	p.L306M	0.008	85	0%	30	33.3%	-	-	benign(0.184)	tolerated(0.96)	neutral(0.017)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
DYNC2H1	79659	genome.wustl.edu	37	11	102986001	102986001	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080463.1	+1	reviewed	p.E200*	1.000	120	0%	81	32.1%	-	-	-	-	-	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103068673	103068673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080463.1	+1	reviewed	p.V2574I	1.000	132	0%	33	36.4%	-	-	possibly_damaging(0.546)	tolerated(0.33)	neutral(0.209)	NULL
CASP4	837	genome.wustl.edu	37	11	104815537	104815537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001225.3	-1	reviewed	p.M359I	1.000	252	0%	58	39.7%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP1	834	genome.wustl.edu	37	11	104900592	104900592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033292.2	-1	reviewed	p.R221H	0.138	60	0%	32	28.1%	-	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
GRIA4	2893	genome.wustl.edu	37	11	105483017	105483017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000829.3	+1	reviewed	p.R35*	1.000	134	0%	131	45%	-	-	-	-	-	superfamily_SSF53822
MSANTD4	84437	genome.wustl.edu	37	11	105880390	105880390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032424.1	-1	validated	p.R304C	1.000	185	0%	86	40.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KBTBD3	143879	genome.wustl.edu	37	11	105924395	105924395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152433.3	-1	validated	p.G341R	1.000	109	0%	37	32.4%	-	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
KBTBD3	143879	genome.wustl.edu	37	11	105924472	105924472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152433.3	-1	validated	p.N315S	1.000	97	0%	34	26.5%	-	-	possibly_damaging(0.49)	tolerated(0.1)	neutral(0.450)	superfamily_Galactose oxidase central domain
AASDHPPT	60496	genome.wustl.edu	37	11	105950229	105950229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015423.2	+1	reviewed	p.E73D	1.000	86	0%	92	30.4%	-	-	benign(0.006)	tolerated(0.33)	neutral(0.024)	superfamily_4-PPT_transf
AASDHPPT	60496	genome.wustl.edu	37	11	105961323	105961323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015423.2	+1	reviewed	p.R150I	1.000	138	0%	44	31.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ACPS,superfamily_4-PPT_transf
GUCY1A2	2977	genome.wustl.edu	37	11	106849411	106849411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000855.1	-1	validated	p.D141Y	1.000	231	0%	81	33.3%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_HNOB
CWF19L2	143884	genome.wustl.edu	37	11	107219754	107219754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152434.2	-1	validated	p.R704Q	0.001	136	0%	22	45.5%	-	-	benign(0.004)	tolerated(0.53)	neutral(0.007)	HMMPfam_CwfJ_C_1
ALKBH8	91801	genome.wustl.edu	37	11	107381672	107381672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138775.2	-1	validated	p.R460C	0.992	131	0%	27	51.9%	-	-	benign(0.094)	deleterious(0.03)	neutral(0.371)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ALKBH8	91801	genome.wustl.edu	37	11	107403051	107403051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138775.2	-1	validated	p.E285K	1.000	89	0%	27	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy
CUL5	8065	genome.wustl.edu	37	11	107925642	107925642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003478.3	+1	validated	p.R247H	1.000	109	0%	53	32.1%	-	-	possibly_damaging(0.94)	deleterious(0.01)	deleterious(0.790)	HMMPfam_Cullin,superfamily_Cullin repeat
ZC3H12C	85463	genome.wustl.edu	37	11	110007838	110007838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033390.1	+1	validated	p.V158M	1.000	105	0%	25	36%	-	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110450584	110450584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020809.2	-1	validated	p.S1029Y	0.937	87	0%	25	40%	-	-	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110450885	110450885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020809.2	-1	validated	p.L929I	0.022	158	0%	68	33.8%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
BTG4	54766	genome.wustl.edu	37	11	111369479	111369479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017589.2	-1	reviewed	p.T8I	1.000	146	0%	77	41.6%	-	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_BTG,HMMSmart_btg1
SIK2	23235	genome.wustl.edu	37	11	111594310	111594310	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015191.1	+1	validated	p.Q746	0.026	52	0%	69	47.8%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
ALG9	79796	genome.wustl.edu	37	11	111739436	111739436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024740.2	-1	reviewed	p.E98D	0.968	92	1.1%	112	36.6%	-	-	benign(0.005)	tolerated(0.28)	neutral(0.032)	HMMPfam_Glyco_transf_22
PIH1D2	120379	genome.wustl.edu	37	11	111941968	111941968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138789.3	-1	validated	p.V114A	1.000	202	0%	119	34.5%	-	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_PIH1
C11orf34	349633	genome.wustl.edu	37	11	112131151	112131151	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145024.1	-1	provisional	p.Y54	0.000	240	0%	126	39.7%	-	-	-	-	-	NULL
NCAM1	4684	genome.wustl.edu	37	11	113075180	113075180	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181351.3	+1	validated	p.G100	0.238	87	0%	120	39.2%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ANKK1	255239	genome.wustl.edu	37	11	113268719	113268719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178510.1	+1	reviewed	p.S325R	0.327	58	0%	84	33.3%	-	-	benign(0.054)	tolerated(0.05)	neutral(0.349)	NULL
DRD2	1813	genome.wustl.edu	37	11	113295287	113295287	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000795.3	-1	reviewed	p.A29	0.007	110	0%	98	30.6%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TMPRSS5	80975	genome.wustl.edu	37	11	113570822	113570822	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030770.2	-1	reviewed	p.I24	0.101	24	0%	42	47.6%	-	-	-	-	-	NULL
LOC390251	390251	genome.wustl.edu	37	11	113660051	113660051	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_016610.3	+1	model	NULL	0.998	71	0%	103	38.8%	-	-	-	-	-	-
USP28	57646	genome.wustl.edu	37	11	113672387	113672387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020886.2	-1	validated	p.K959R	0.979	112	0%	72	11.1%	-	-	benign(0.178)	tolerated(0.57)	neutral(0.022)	PatternScan_CPSASE_2
USP28	57646	genome.wustl.edu	37	11	113684625	113684625	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020886.2	-1	validated	p.C575	0.627	131	0%	49	32.7%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
HTR3B	9177	genome.wustl.edu	37	11	113815477	113815477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006028.3	+1	reviewed	p.E364*	1.000	132	0%	72	9.7%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HTR3A	3359	genome.wustl.edu	37	11	113848493	113848493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213621.3	+1	reviewed	p.A23V	0.696	39	0%	59	45.8%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
HTR3A	3359	genome.wustl.edu	37	11	113853876	113853876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213621.3	+1	reviewed	p.V137M	1.000	89	0%	93	25.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HTR3A	3359	genome.wustl.edu	37	11	113860284	113860284	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213621.3	+1	reviewed	p.S444	0.001	20	0%	30	43.3%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
REXO2	25996	genome.wustl.edu	37	11	114320615	114320615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015523.3	+1	validated	p.R211Q	1.000	172	0%	123	39.8%	-	-	possibly_damaging(0.915)	deleterious(0.02)	deleterious(0.750)	HMMSmart_SM00479,superfamily_Ribonuclease H-like
FAM55A	120400	genome.wustl.edu	37	11	114401502	114401502	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000424269	-1	known	p.I76	0.240	503	0%	191	38.2%	-	-	-	-	-	NULL
ZNF259	8882	genome.wustl.edu	37	11	116649757	116649757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003904.3	-1	provisional	p.D422Y	0.931	44	0%	83	37.3%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
SIK3	23387	genome.wustl.edu	37	11	116719845	116719845	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000445177	-1	known	p.R1264*	0.972	91	0%	74	35.1%	-	-	-	-	-	NULL
SIK3	23387	genome.wustl.edu	37	11	116767020	116767020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025164.3	-1	validated	p.R214W	1.000	63	0%	45	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SIDT2	51092	genome.wustl.edu	37	11	117060922	117060922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040455.1	+1	validated	p.L512V	1.000	113	0%	212	36.3%	-	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117066549	117066549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040455.1	+1	validated	p.R785Q	0.996	137	0%	201	35.8%	-	-	possibly_damaging(0.827)	tolerated(0.5)	neutral(0.324)	NULL
PCSK7	9159	genome.wustl.edu	37	11	117079682	117079682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004716.2	-1	reviewed	p.S541N	1.000	78	0%	58	19%	-	-	benign(0.003)	tolerated(0.31)	neutral(0.027)	HMMPfam_P_proprotein,superfamily_Gal_bind_like
RNF214	257160	genome.wustl.edu	37	11	117117545	117117545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077239.1	+1	validated	p.Q280H	1.000	425	0.2%	429	37.5%	-	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
CEP164	22897	genome.wustl.edu	37	11	117246502	117246502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014956.4	+1	validated	p.R438W	0.003	195	0%	209	38.8%	-	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117403236	117403236	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020693.2	-1	provisional	p.E231	1.000	88	0%	80	43.8%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FXYD2	486	genome.wustl.edu	37	11	117693375	117693375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127489.1	-1	reviewed	p.R28H	0.000	37	0%	65	18.5%	-	-	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
MPZL2	10205	genome.wustl.edu	37	11	118130877	118130877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005797.3	-1	reviewed	p.G159D	1.000	143	0%	48	29.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE4A	9354	genome.wustl.edu	37	11	118240247	118240247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004788.2	+1	reviewed	p.E135D	1.000	136	0%	55	41.8%	-	-	benign(0.021)	tolerated(0.27)	neutral(0.035)	NULL
UBE4A	9354	genome.wustl.edu	37	11	118255636	118255636	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004788.2	+1	reviewed	p.I803	1.000	89	0%	38	28.9%	-	-	-	-	-	HMMPfam_Ufd2P_core
MLL	4297	genome.wustl.edu	37	11	118343093	118343093	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005933.2	+1	validated	p.R407*	0.989	51	0%	27	22.2%	-	-	-	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118348802	118348802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005933.2	+1	validated	p.S1152L	1.000	131	0%	81	28.4%	-	-	possibly_damaging(0.662)	-	-	HMMPfam_zf-CXXC
DDX6	1656	genome.wustl.edu	37	11	118625472	118625472	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004397.4	-1	reviewed	p.S467	1.000	185	0%	75	32%	-	-	-	-	-	superfamily_SSF52540
BCL9L	283149	genome.wustl.edu	37	11	118769552	118769552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182557.2	-1	validated	p.H1358Y	1.000	78	0%	106	25.5%	-	-	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	NULL
CCDC84	338657	genome.wustl.edu	37	11	118885778	118885778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198489.1	+1	provisional	p.E264K	1.000	68	0%	73	39.7%	-	-	benign(0.076)	tolerated(0.17)	neutral(0.065)	NULL
SLC37A4	2542	genome.wustl.edu	37	11	118899957	118899957	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000330775	-1	known	p.E41	1.000	114	0%	166	34.9%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HYOU1	10525	genome.wustl.edu	37	11	118917457	118917457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130991.1	-1	reviewed	p.V885M	0.975	94	0%	100	39%	-	-	probably_damaging(0.971)	tolerated(0.12)	deleterious(0.673)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
HYOU1	10525	genome.wustl.edu	37	11	118920308	118920308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130991.1	-1	reviewed	p.T589I	0.005	115	0%	143	27.3%	-	-	benign(0.026)	tolerated(0.09)	neutral(0.297)	NULL
HINFP	25988	genome.wustl.edu	37	11	119003930	119003930	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015517.3	+1	validated	e8+1	1.000	62	0%	83	34.9%	-	-	-	-	-	-
HINFP	25988	genome.wustl.edu	37	11	119004865	119004865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015517.3	+1	validated	p.Q404R	1.000	46	0%	21	66.7%	-	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
CBL	867	genome.wustl.edu	37	11	119142558	119142558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005188.2	+1	reviewed	p.A186V	1.000	79	0%	70	10%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cbl_N2,superfamily_SSF47473
CBL	867	genome.wustl.edu	37	11	119155929	119155929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005188.2	+1	reviewed	p.P532S	1.000	162	0%	107	36.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TRIM29	23650	genome.wustl.edu	37	11	119998143	119998143	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012101.3	-1	reviewed	p.V345	1.000	71	0%	114	24.6%	-	-	-	-	-	NULL
TMEM136	219902	genome.wustl.edu	37	11	120198260	120198260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174926.1	+1	provisional	p.R59H	1.000	175	0.6%	253	32.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TRAM_LAG1_CLN8
TMEM136	219902	genome.wustl.edu	37	11	120198304	120198304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174926.1	+1	provisional	p.A74T	1.000	155	0%	208	36.5%	-	-	probably_damaging(0.959)	tolerated(0.08)	deleterious(0.703)	HMMPfam_TRAM_LAG1_CLN8
TMEM136	219902	genome.wustl.edu	37	11	120200847	120200847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375095	+1	known	p.E121K	1.000	145	0%	158	44.3%	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
ARHGEF12	23365	genome.wustl.edu	37	11	120312812	120312812	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015313.1	+1	reviewed	e15-1	1.000	259	0%	129	33.3%	-	-	-	-	-	-
ARHGEF12	23365	genome.wustl.edu	37	11	120345332	120345332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015313.1	+1	reviewed	p.D1033Y	1.000	394	0%	234	35%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF12	23365	genome.wustl.edu	37	11	120348157	120348157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015313.1	+1	reviewed	p.G1152R	1.000	105	0%	49	40.8%	-	-	possibly_damaging(0.712)	tolerated(0.16)	neutral(0.317)	NULL
TECTA	7007	genome.wustl.edu	37	11	121028741	121028741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005422.2	+1	reviewed	p.D1499	0.709	30	3.3%	61	31.1%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
SORL1	6653	genome.wustl.edu	37	11	121460762	121460762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003105.4	+1	reviewed	p.E1364D	0.997	98	0%	61	39.3%	-	-	benign(0.005)	tolerated(0.45)	neutral(0.012)	superfamily_LDL receptor-like module
SORL1	6653	genome.wustl.edu	37	11	121491773	121491773	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003105.4	+1	reviewed	p.L1964	0.285	111	0%	60	50%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
UBASH3B	84959	genome.wustl.edu	37	11	122647894	122647894	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032873.4	+1	validated	p.H126	1.000	63	0%	55	20%	-	-	-	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122653814	122653814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032873.4	+1	validated	p.F219V	1.000	215	0%	138	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRTAM	56253	genome.wustl.edu	37	11	122724709	122724709	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019604.2	+1	validated	p.E135	0.000	93	0%	48	31.2%	-	-	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
CLMP	79827	genome.wustl.edu	37	11	122944340	122944340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024769.2	-1	validated	p.A322T	0.998	174	0%	136	11.8%	-	-	probably_damaging(0.999)	tolerated(0.4)	deleterious(0.506)	NULL
ZNF202	7753	genome.wustl.edu	37	11	123597001	123597001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003455.2	-1	validated	p.R551W	0.087	86	0%	71	40.8%	-	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR4D5	219875	genome.wustl.edu	37	11	123810894	123810894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001965.1	+1	provisional	p.D191Y	0.991	376	0%	130	33.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000226461	0	genome.wustl.edu	37	11	123880423	123880423	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430459	+1	known	p.D18	0.000	158	0%	37	32.4%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR10G7	390265	genome.wustl.edu	37	11	123909061	123909061	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004463.1	-1	provisional	p.S216	0.999	357	0%	164	33.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
VWA5A	4013	genome.wustl.edu	37	11	123993739	123993739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130142.1	+1	validated	p.T278I	0.000	58	0%	39	12.8%	-	-	benign(0.008)	tolerated(0.39)	neutral(0.016)	superfamily_vWA-like
VWA5A	4013	genome.wustl.edu	37	11	123994389	123994389	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130142.1	+1	validated	p.Q348*	0.003	120	0%	89	36%	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
OR8B12	219858	genome.wustl.edu	37	11	124413062	124413062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005195.1	-1	provisional	p.M163I	0.000	128	0%	49	42.9%	-	-	benign(0.01)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8A1	390275	genome.wustl.edu	37	11	124440490	124440490	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005194.1	+1	provisional	p.E176*	0.014	153	0%	57	42.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TBRG1	84897	genome.wustl.edu	37	11	124493084	124493084	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032811.2	+1	validated	p.R35	1.000	14	0%	42	45.2%	-	-	-	-	-	NULL
SIAE	54414	genome.wustl.edu	37	11	124519594	124519594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170601.3	-1	validated	p.A215T	0.927	91	0%	45	22.2%	-	-	benign(0.078)	tolerated(0.36)	neutral(0.026)	HMMPfam_DUF303
PKNOX2	63876	genome.wustl.edu	37	11	125280723	125280723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022062.2	+1	validated	p.V256A	1.000	79	0%	92	35.9%	-	-	possibly_damaging(0.865)	tolerated(0.73)	neutral(0.337)	NULL
ACRV1	56	genome.wustl.edu	37	11	125542517	125542517	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001612.4	-1	reviewed	p.R257*	0.690	178	0.6%	50	34%	-	-	-	-	-	NULL
PUS3	83480	genome.wustl.edu	37	11	125763822	125763822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031307.3	-1	validated	p.R435Q	0.876	297	0%	312	31.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DDX25	29118	genome.wustl.edu	37	11	125791088	125791088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013264.3	+1	reviewed	p.I402L	1.000	21	0%	22	36.4%	-	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ETS1	2113	genome.wustl.edu	37	11	128354720	128354720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143820.1	-1	validated	p.R287H	1.000	105	0%	58	43.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FLI1	2313	genome.wustl.edu	37	11	128680760	128680760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002017.3	+1	validated	p.S412	0.999	222	0%	125	32.8%	-	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
KCNJ5	3762	genome.wustl.edu	37	11	128781572	128781572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000890.3	+1	reviewed	p.G135D	1.000	159	0%	150	46%	-	-	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	HMMPfam_IRK,superfamily_SSF81324
ARHGAP32	9743	genome.wustl.edu	37	11	128856518	128856518	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142685.1	-1	validated	p.P434	0.000	80	0%	22	22.7%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
NFRKB	4798	genome.wustl.edu	37	11	129747241	129747241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006165.3	-1	validated	p.E542D	1.000	146	0%	105	36.2%	-	-	unknown(0)	tolerated(0.07)	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129762680	129762680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006165.3	-1	validated	p.G35D	0.856	72	0%	131	48.1%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
APLP2	334	genome.wustl.edu	37	11	129980530	129980530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001642.2	+1	validated	p.R126H	1.000	176	0%	94	37.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain
APLP2	334	genome.wustl.edu	37	11	129992359	129992359	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001642.2	+1	validated	p.P291	0.554	255	0%	233	11.6%	-	-	-	-	-	NULL
APLP2	334	genome.wustl.edu	37	11	130013854	130013854	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024515.1	+1	validated	NULL	0.009	4	0.000	4	1.000	-	-	-	-	-	-
ADAMTS8	11095	genome.wustl.edu	37	11	130286869	130286869	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007037.4	-1	reviewed	p.G354	0.958	59	0%	119	43.7%	-	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SNX19	399979	genome.wustl.edu	37	11	130773266	130773266	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014758.2	-1	validated	p.E819	0.277	185	0%	79	43%	-	-	-	-	-	NULL
SNX19	399979	genome.wustl.edu	37	11	130784460	130784460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014758.2	-1	validated	p.G459*	0.008	205	0%	241	12%	-	-	-	-	-	NULL
LOC100128095	100128095	genome.wustl.edu	37	11	132813180	132813180	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343137.1	+1	model	p.L138	0.911	33	0%	49	36.7%	-	-	-	-	-	NULL
SPATA19	219938	genome.wustl.edu	37	11	133714181	133714181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174927.1	-1	provisional	p.V107I	0.997	106	0%	99	36.4%	-	-	benign(0.231)	deleterious(0)	neutral(0.468)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133801024	133801024	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014987.1	-1	validated	p.G458	1.000	45	0%	75	38.7%	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
JAM3	83700	genome.wustl.edu	37	11	133938977	133938977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032801.3	+1	reviewed	p.D45G	0.994	16	0%	27	33.3%	-	-	unknown(0)	-	-	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134062673	134062673	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015261.2	-1	validated	p.R652	0.988	65	0%	26	23.1%	-	-	-	-	-	superfamily_ARM-type_fold
NCAPD3	23310	genome.wustl.edu	37	11	134072709	134072709	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015261.2	-1	validated	e13+2	1.000	160	0%	78	39.7%	-	-	-	-	-	-
ACAD8	27034	genome.wustl.edu	37	11	134127029	134127029	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014384.2	+1	reviewed	p.F86	0.998	95	0%	119	42.9%	-	-	unknown(0)	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
GLB1L3	112937	genome.wustl.edu	37	11	134158721	134158721	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080407.2	+1	validated	p.V222	0.957	87	0%	141	32.6%	-	-	-	-	-	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
B3GAT1	27087	genome.wustl.edu	37	11	134253735	134253735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018644.3	-1	reviewed	p.L154M	1.000	26	0%	58	31%	-	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	HMMPfam_Glyco_transf_43,superfamily_SSF53448
IQSEC3	440073	genome.wustl.edu	37	12	266194	266194	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015232.1	+1	validated	p.C416	0.992	29	0%	42	40.5%	-	-	-	-	-	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7
KDM5A	5927	genome.wustl.edu	37	12	427348	427348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042603.1	-1	reviewed	p.A941T	1.000	124	0%	60	35%	-	-	benign(0.354)	tolerated(0.52)	neutral(0.120)	HMMPfam_PLU-1
KDM5A	5927	genome.wustl.edu	37	12	472156	472156	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042603.1	-1	reviewed	p.P215	0.984	153	0.7%	92	27.2%	-	-	-	-	-	NULL
B4GALNT3	283358	genome.wustl.edu	37	12	666030	666030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173593.3	+1	validated	p.P793H	1.000	28	0%	45	26.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nucleotide-diphospho-sugar transferases
WNK1	65125	genome.wustl.edu	37	12	968540	968540	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018979.3	+1	reviewed	p.K510	1.000	95	0%	27	22.2%	-	-	-	-	-	superfamily_Kinase_like
WNK1	65125	genome.wustl.edu	37	12	999660	999660	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018979.3	+1	reviewed	p.G1830	0.483	137	0%	79	35.4%	-	-	-	-	-	NULL
WNK1	65125	genome.wustl.edu	37	12	1005485	1005485	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018979.3	+1	reviewed	p.G1944	0.971	116	0%	51	13.7%	-	-	-	-	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1299074	1299074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178040.2	+1	reviewed	p.R736Q	1.000	173	0%	58	46.6%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1372309	1372309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178040.2	+1	reviewed	p.A866V	1.000	71	0%	60	36.7%	-	-	probably_damaging(0.982)	tolerated(0.51)	neutral(0.435)	HMMPfam_Cast
DCP1B	196513	genome.wustl.edu	37	12	2061956	2061956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152640.3	-1	validated	p.R384C	0.002	70	0%	39	41%	-	-	benign(0.377)	tolerated(0.07)	neutral(0.440)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2676818	2676818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199460.2	+1	reviewed	p.V585M	1.000	26	0%	38	31.6%	-	-	possibly_damaging(0.887)	tolerated(0.16)	neutral(0.406)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TEAD4	7004	genome.wustl.edu	37	12	3149321	3149321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003213.2	+1	reviewed	p.R363W	1.000	152	0%	181	34.8%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_TEA
PRMT8	56341	genome.wustl.edu	37	12	3600829	3600829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019854.3	+1	validated	p.R13M	0.997	50	0%	135	13.3%	-	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
PRMT8	56341	genome.wustl.edu	37	12	3678727	3678727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019854.3	+1	validated	p.H237Y	1.000	129	0%	67	37.3%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT8	56341	genome.wustl.edu	37	12	3686075	3686075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019854.3	+1	validated	p.R251W	1.000	81	1.2%	69	34.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DYRK4	8798	genome.wustl.edu	37	12	4719364	4719364	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003845.1	+1	provisional	p.K353	1.000	175	0%	96	45.8%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK4	8798	genome.wustl.edu	37	12	4722809	4722809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003845.1	+1	provisional	p.A485T	0.808	51	0%	22	31.8%	-	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4736007	4736007	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006422.2	-1	reviewed	p.S687	1.000	66	0%	49	26.5%	-	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
GALNT8	26290	genome.wustl.edu	37	12	4848464	4848464	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017417.1	+1	reviewed	p.E215	0.999	133	0%	30	33.3%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
GALNT8	26290	genome.wustl.edu	37	12	4855412	4855412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017417.1	+1	reviewed	p.E387D	0.999	249	0.4%	82	34.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53448
GALNT8	26290	genome.wustl.edu	37	12	4870230	4870230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017417.1	+1	reviewed	p.R427H	0.600	126	0%	101	13.9%	-	-	probably_damaging(0.988)	tolerated(0.3)	neutral(0.466)	superfamily_SSF53448
KCNA6	3742	genome.wustl.edu	37	12	4919546	4919546	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002235.3	+1	reviewed	p.P113	0.988	27	0%	61	21.3%	-	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA1	3736	genome.wustl.edu	37	12	5020712	5020712	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000217.2	+1	reviewed	p.A56	0.977	31	0%	58	44.8%	-	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
LOC390282	390282	genome.wustl.edu	37	12	5141938	5141938	+	Missense_Mutation	SNP	C	C	T	rs138419600	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_372447.5	-1	model	p.R53Q	1.000	32	0%	32	28.1%	-	-	-	-	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5672678	5672678	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020373.2	-1	validated	p.T928	0.853	61	0%	61	37.7%	-	-	-	-	-	HMMPfam_DUF590
ANO2	57101	genome.wustl.edu	37	12	5687557	5687557	+	Silent	SNP	C	C	T	rs149600297	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020373.2	-1	validated	p.P787	0.766	135	0.7%	99	32.3%	-	-	-	-	-	HMMPfam_DUF590
ANO2	57101	genome.wustl.edu	37	12	5939599	5939599	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020373.2	-1	validated	e6+2	1.000	215	0%	216	32.4%	-	-	-	-	-	-
ANO2	57101	genome.wustl.edu	37	12	5963308	5963308	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020373.2	-1	validated	e4-1	1.000	52	0%	32	28.1%	-	-	-	-	-	-
VWF	7450	genome.wustl.edu	37	12	6103645	6103645	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000552.3	-1	reviewed	p.Q2064	0.970	356	0%	188	24.5%	-	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
LTBR	4055	genome.wustl.edu	37	12	6494215	6494215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002342.1	+1	reviewed	p.R74H	0.000	58	0%	107	41.1%	-	-	benign(0.042)	tolerated(0.27)	neutral(0.036)	HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,superfamily_SSF57586
LTBR	4055	genome.wustl.edu	37	12	6495305	6495305	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002342.1	+1	reviewed	p.S182	0.001	60	0%	95	45.3%	-	-	-	-	-	HMMSmart_TNFR
LOC678655	678655	genome.wustl.edu	37	12	6559883	6559883	+	RNA	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_015382.1	-1	predicted	NULL	0.000	62	0%	56	41.1%	-	-	-	-	-	-
NCAPD2	9918	genome.wustl.edu	37	12	6638979	6638979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014865.3	+1	validated	p.S1231L	0.987	33	0%	78	38.5%	-	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	NULL
NOP2	4839	genome.wustl.edu	37	12	6672800	6672800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033714.1	-1	validated	p.P219H	0.421	80	0%	133	33.8%	-	-	benign(0.186)	tolerated(0.11)	neutral(0.289)	NULL
CHD4	1108	genome.wustl.edu	37	12	6692411	6692411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001273.2	-1	reviewed	p.R1338I	1.000	196	0%	213	32.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1087
LPAR5	57121	genome.wustl.edu	37	12	6729587	6729587	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142961.1	-1	reviewed	p.R276	0.148	6	0.000	27	0.556	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LPAR5	57121	genome.wustl.edu	37	12	6730386	6730386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142961.1	-1	reviewed	p.S10I	0.000	216	0%	338	34.9%	-	-	possibly_damaging(0.563)	deleterious(0.02)	deleterious(0.576)	superfamily_Family A G protein-coupled receptor-like
USP5	8078	genome.wustl.edu	37	12	6972349	6972349	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098536.1	+1	validated	e15-1	1.000	70	0%	113	15.9%	-	-	-	-	-	-
ENO2	2026	genome.wustl.edu	37	12	7024999	7024999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001975.2	+1	reviewed	p.M1I	1.000	27	0%	45	48.9%	-	-	benign(0.175)	deleterious(0.03)	neutral(0.381)	NULL
C12orf57	113246	genome.wustl.edu	37	12	7053326	7053326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138425.2	+1	provisional	p.E14D	0.977	35	0%	102	41.2%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
C1R	715	genome.wustl.edu	37	12	7241932	7241932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000290575	-1	known	p.I256S	1.000	223	0%	229	39.7%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C1RL	51279	genome.wustl.edu	37	12	7249386	7249386	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016546.2	-1	validated	p.V355	0.995	88	1.1%	72	16.7%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C1RL	51279	genome.wustl.edu	37	12	7260929	7260929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016546.2	-1	validated	p.A73V	0.992	49	0%	82	32.9%	-	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
CLSTN3	9746	genome.wustl.edu	37	12	7309118	7309118	+	Missense_Mutation	SNP	G	G	A	rs141269161	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000331148	+1	known	p.R49H	0.000	8	0.000	8	0.500	-	-	-	-	-	NULL
PEX5	5830	genome.wustl.edu	37	12	7344227	7344227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001131023.1	+1	reviewed	p.D142Y	1.000	175	0%	283	33.2%	-	-	possibly_damaging(0.53)	deleterious(0.02)	deleterious(0.562)	NULL
CD163L1	283316	genome.wustl.edu	37	12	7527978	7527978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174941.4	-1	reviewed	p.F967S	0.020	73	0%	45	35.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7528549	7528549	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174941.4	-1	reviewed	p.K811	0.000	90	0%	53	54.7%	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
ENSG00000246407	0	genome.wustl.edu	37	12	8385184	8385184	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000499592	-1	known	NULL	0.056	340	0%	449	22.5%	-	-	-	-	-	-
CLEC4E	26253	genome.wustl.edu	37	12	8691893	8691893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014358.2	-1	reviewed	p.R47H	0.000	173	0%	96	14.6%	-	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
AICDA	57379	genome.wustl.edu	37	12	8756935	8756935	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020661.2	-1	reviewed	e5-2	0.999	95	0%	103	36.9%	-	-	-	-	-	-
AICDA	57379	genome.wustl.edu	37	12	8757480	8757480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020661.2	-1	reviewed	p.E156K	0.825	33	0%	89	27%	-	-	benign(0)	tolerated(0.89)	-	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
MFAP5	8076	genome.wustl.edu	37	12	8808410	8808410	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003480.2	-1	reviewed	p.A37	0.001	128	0%	65	36.9%	-	-	-	-	-	HMMPfam_MAGP
A2ML1	144568	genome.wustl.edu	37	12	8975809	8975809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144670.3	+1	validated	p.N32H	0.968	96	0%	91	42.9%	-	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_A2M_N
A2ML1	144568	genome.wustl.edu	37	12	9006822	9006822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144670.3	+1	validated	p.L897I	1.000	128	0%	69	37.7%	-	-	benign(0.23)	tolerated(0.43)	neutral(0.036)	NULL
PHC1	1911	genome.wustl.edu	37	12	9089468	9089468	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004426.2	+1	reviewed	p.A795	0.462	90	0%	75	40%	-	-	-	-	-	HMMPfam_zf-FCS
M6PR	4074	genome.wustl.edu	37	12	9094481	9094481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002355.2	-1	reviewed	p.R256H	1.000	184	0%	110	32.7%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Man-6-P_recep
PZP	5858	genome.wustl.edu	37	12	9317964	9317964	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002864.2	-1	validated	e19-1	0.567	86	0%	44	36.4%	-	-	-	-	-	-
PZP	5858	genome.wustl.edu	37	12	9346783	9346783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002864.2	-1	validated	p.I382V	0.047	233	0%	169	32.5%	-	-	benign(0.026)	tolerated(0.45)	neutral(0.013)	NULL
DDX11L8	100302090	genome.wustl.edu	37	12	9465240	9465240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000341155	+1	known	p.G829R	1.000	78	0%	124	28.2%	-	-	-	-	-	HMMSmart_SM00491
DDX12P	440081	genome.wustl.edu	37	12	9571785	9571785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000290818	-1	known	p.P821H	1.000	35	0%	72	50%	-	-	-	-	-	HMMSmart_SM00491
CLEC12A	160364	genome.wustl.edu	37	12	10134679	10134679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138337.5	+1	reviewed	p.D198Y	0.000	120	0%	31	29%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC7A	64581	genome.wustl.edu	37	12	10280288	10280288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000422474	-1	known	p.A87V	0.000	88	0%	62	41.9%	-	-	unknown(0)	-	-	NULL
OLR1	4973	genome.wustl.edu	37	12	10319318	10319318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002543.3	-1	reviewed	p.N139K	0.006	261	0.4%	100	33%	-	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
KLRC4	8302	genome.wustl.edu	37	12	10560376	10560376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013431.2	-1	reviewed	p.G118D	0.000	233	0%	51	35.3%	-	-	benign(0.048)	tolerated(0.12)	neutral(0.264)	NULL
ENSG00000180574	0	genome.wustl.edu	37	12	10658540	10658540	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000322446	+1	known	p.P13	0.983	87	0%	69	46.4%	-	-	-	-	-	NULL
STYK1	55359	genome.wustl.edu	37	12	10782235	10782235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018423.2	-1	validated	p.R164*	0.994	105	0%	44	29.5%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PRH1	5554	genome.wustl.edu	37	12	11035030	11035030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006250.2	-1	provisional	p.P102H	0.001	287	0%	92	15.2%	-	-	unknown(0)	tolerated(0.64)	-	NULL
ETV6	2120	genome.wustl.edu	37	12	11905513	11905513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001987.4	+1	reviewed	p.R55C	1.000	45	0%	24	29.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
LRP6	4040	genome.wustl.edu	37	12	12301955	12301955	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002336.2	-1	reviewed	p.L1043V	0.994	154	0%	57	14%	-	-	benign(0.06)	deleterious(0.02)	neutral(0.387)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
GPR19	2842	genome.wustl.edu	37	12	12814617	12814617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006143.2	-1	validated	p.D256Y	0.982	46	0%	48	39.6%	-	-	possibly_damaging(0.835)	tolerated(0.08)	deleterious(0.619)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIAA1467	57613	genome.wustl.edu	37	12	13221342	13221342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020853.1	+1	validated	p.L416R	0.961	92	0%	37	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C12orf36	283422	genome.wustl.edu	37	12	13529332	13529332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182558.1	-1	provisional	p.R3I	0.005	139	0%	50	26%	-	-	unknown(0)	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13716798	13716798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000834.3	-1	reviewed	p.D1125G	1.000	73	0%	102	10.8%	-	-	possibly_damaging(0.646)	tolerated(0.12)	deleterious(0.487)	HMMPfam_NMDAR2_C
ATF7IP	55729	genome.wustl.edu	37	12	14591107	14591107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018179.3	+1	validated	p.C612Y	1.000	198	0%	134	32.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14649176	14649176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018179.3	+1	validated	p.R1098*	0.997	78	0%	17	29.4%	-	-	-	-	-	NULL
PLBD1	79887	genome.wustl.edu	37	12	14706157	14706157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024829.5	-1	validated	p.A102V	0.999	119	0%	42	11.9%	-	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_Phospholip_B
GUCY2C	2984	genome.wustl.edu	37	12	14792826	14792826	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004963.3	-1	validated	p.F709	0.999	229	0%	72	31.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WBP11	51729	genome.wustl.edu	37	12	14940166	14940166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016312.2	-1	reviewed	p.R587W	1.000	191	0%	110	33.6%	-	-	unknown(0)	deleterious(0)	-	NULL
PDE6H	5149	genome.wustl.edu	37	12	15132112	15132112	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006205.2	+1	reviewed	e2-1	1.000	229	0%	83	36.1%	-	-	-	-	-	-
PTPRO	5800	genome.wustl.edu	37	12	15668462	15668462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030667.1	+1	reviewed	p.L499M	1.000	188	0%	58	13.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
STRAP	11171	genome.wustl.edu	37	12	16052859	16052859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007178.3	+1	validated	p.G266D	1.000	102	0%	36	13.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STRAP	11171	genome.wustl.edu	37	12	16055867	16055867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007178.3	+1	validated	p.E336D	1.000	58	0%	33	39.4%	-	-	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
PLCZ1	89869	genome.wustl.edu	37	12	18872468	18872468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033123.2	-1	provisional	p.D156Y	1.000	126	0%	45	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00148,superfamily_EF-hand
PDE3A	5139	genome.wustl.edu	37	12	20807094	20807094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000921.3	+1	validated	p.P1047T	0.002	220	0%	74	40.5%	-	-	benign(0)	tolerated(0.16)	neutral(0.059)	superfamily_SSF109604
SLCO1C1	53919	genome.wustl.edu	37	12	20854291	20854291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017435.4	+1	reviewed	p.A57T	1.000	306	0%	84	35.7%	-	-	benign(0.308)	tolerated(0.37)	neutral(0.115)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1C1	53919	genome.wustl.edu	37	12	20858887	20858887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017435.4	+1	reviewed	p.N92K	1.000	84	0%	36	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1A2	6579	genome.wustl.edu	37	12	21422649	21422649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021094.3	-1	reviewed	p.A616T	0.996	163	0%	38	42.1%	-	-	benign(0.056)	tolerated(0.37)	neutral(0.022)	superfamily_MFS general substrate transporter
ABCC9	10060	genome.wustl.edu	37	12	22035766	22035766	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005691.2	-1	reviewed	p.H651	1.000	147	0%	44	27.3%	-	-	-	-	-	NULL
CMAS	55907	genome.wustl.edu	37	12	22208151	22208151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018686.3	+1	reviewed	p.R110Q	1.000	141	0%	84	39.3%	-	-	possibly_damaging(0.885)	tolerated(0.27)	neutral(0.379)	HMMPfam_CTP_transf_3,superfamily_Nucleotide-diphospho-sugar transferases
BCAT1	586	genome.wustl.edu	37	12	24970965	24970965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005504.6	-1	reviewed	p.D380N	0.992	225	0%	49	32.7%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_Aminotrans_IV
BHLHE41	79365	genome.wustl.edu	37	12	26277093	26277093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030762.2	-1	reviewed	p.H49R	1.000	178	0%	333	36%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
ITPR2	3709	genome.wustl.edu	37	12	26629871	26629871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002223.2	-1	validated	p.L2065I	1.000	196	0%	137	35.8%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26714876	26714876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002223.2	-1	validated	p.R1547H	1.000	51	0%	24	45.8%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
FGFR1OP2	26127	genome.wustl.edu	37	12	27113463	27113463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015633.2	+1	validated	p.R138C	1.000	77	0%	20	45%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_DUF837
FAR2	55711	genome.wustl.edu	37	12	29423524	29423524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018099.3	+1	provisional	p.A48T	1.000	61	0%	32	34.4%	-	-	benign(0.151)	tolerated(0.12)	neutral(0.274)	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
ERGIC2	51290	genome.wustl.edu	37	12	29524467	29524467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016570.2	-1	validated	p.G34C	1.000	163	0%	31	22.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29649182	29649182	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183378.2	-1	validated	p.F71	0.035	109	0%	75	36%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMTC1	83857	genome.wustl.edu	37	12	29736385	29736385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175861.2	-1	provisional	p.T350I	1.000	91	0%	22	31.8%	-	-	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
TMTC1	83857	genome.wustl.edu	37	12	29920832	29920832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175861.2	-1	provisional	p.A52V	1.000	114	0%	22	36.4%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30877365	30877365	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002259.1	-1	validated	p.D642	1.000	135	0%	28	35.7%	-	-	-	-	-	NULL
OVOS2	144203	genome.wustl.edu	37	12	31301826	31301826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343151.1	-1	model	p.Y376D	0.998	385	0%	132	36.4%	-	-	-	-	-	NULL
C12orf35	55196	genome.wustl.edu	37	12	32145425	32145425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018169.3	+1	validated	p.L1734M	0.924	86	0%	63	14.3%	-	-	benign(0.048)	tolerated(0.72)	neutral(0.005)	NULL
FGD4	121512	genome.wustl.edu	37	12	32791807	32791807	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000266482	+1	known	p.I459	0.000	82	0%	44	34.1%	-	-	-	-	-	NULL
YARS2	51067	genome.wustl.edu	37	12	32908751	32908751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040436.1	-1	validated	p.L20I	0.000	12	0%	23	39.1%	-	-	benign(0.006)	tolerated(0.28)	neutral(0.032)	NULL
PKP2	5318	genome.wustl.edu	37	12	32955357	32955357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004572.3	-1	reviewed	p.L760R	0.968	48	0%	27	48.1%	-	-	benign(0.025)	tolerated(0.63)	neutral(0.005)	superfamily_ARM repeat
SYT10	341359	genome.wustl.edu	37	12	33579088	33579088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198992.2	-1	provisional	p.P165H	1.000	128	0%	65	33.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALG10	84920	genome.wustl.edu	37	12	34176942	34176942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032834.3	+1	reviewed	p.I73V	0.993	416	1.4%	229	17%	-	-	benign(0)	tolerated(1)	-	HMMPfam_DIE2_ALG10
ALG10B	144245	genome.wustl.edu	37	12	38712177	38712177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013620.3	+1	validated	p.L96F	1.000	421	0%	175	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DIE2_ALG10
KIF21A	55605	genome.wustl.edu	37	12	39705269	39705269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017641.3	-1	validated	p.A1336V	1.000	153	0%	49	32.7%	-	-	possibly_damaging(0.568)	tolerated(0.05)	deleterious(0.540)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ABCD2	225	genome.wustl.edu	37	12	40013068	40013068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005164.3	-1	reviewed	p.R117I	1.000	136	0.7%	81	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane_2
ABCD2	225	genome.wustl.edu	37	12	40013228	40013228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005164.3	-1	reviewed	p.E64*	0.001	98	0%	91	42.9%	-	-	-	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40078675	40078675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031748.2	+1	validated	p.N431K	0.000	126	0%	28	39.3%	-	-	probably_damaging(0.957)	-	-	NULL
SLC2A13	114134	genome.wustl.edu	37	12	40224027	40224027	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052885.3	-1	validated	p.Y441	1.000	114	0%	30	40%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
CNTN1	1272	genome.wustl.edu	37	12	41337806	41337806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001843.2	+1	reviewed	p.R506Q	0.998	122	0%	26	42.3%	-	-	possibly_damaging(0.883)	tolerated(0.15)	deleterious(0.586)	superfamily_Immunoglobulin
PDZRN4	29951	genome.wustl.edu	37	12	41967307	41967307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013377.3	+1	validated	p.R651Q	0.995	59	0%	16	31.2%	-	-	probably_damaging(0.983)	tolerated(0.18)	deleterious(0.485)	NULL
PPHLN1	51535	genome.wustl.edu	37	12	42787449	42787449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016488.6	+1	reviewed	p.E242D	1.000	87	0%	56	35.7%	-	-	possibly_damaging(0.935)	deleterious(0.04)	deleterious(0.730)	NULL
PRICKLE1	144165	genome.wustl.edu	37	12	42860145	42860145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144881.1	-1	reviewed	p.R209H	1.000	108	0%	76	39.5%	-	-	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
ADAMTS20	80070	genome.wustl.edu	37	12	43833714	43833714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025003.3	-1	validated	p.E817*	1.000	210	0%	66	30.3%	-	-	-	-	-	HMMPfam_ADAM_spacer1
ADAMTS20	80070	genome.wustl.edu	37	12	43833812	43833812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025003.3	-1	validated	p.K784R	1.000	116	0%	49	26.5%	-	-	benign(0.016)	tolerated(0.31)	neutral(0.028)	HMMPfam_ADAM_spacer1
ADAMTS20	80070	genome.wustl.edu	37	12	43884214	43884214	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025003.3	-1	validated	p.E367	1.000	92	0%	48	33.3%	-	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PUS7L	83448	genome.wustl.edu	37	12	44124360	44124360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098614.1	-1	validated	p.R642I	0.995	168	0%	44	18.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
TWF1	5756	genome.wustl.edu	37	12	44190850	44190850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002822.3	-1	reviewed	p.L305M	1.000	95	0%	88	31.8%	-	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
TMEM117	84216	genome.wustl.edu	37	12	44537328	44537328	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032256.1	+1	provisional	p.G137	1.000	146	0%	88	30.7%	-	-	unknown(0)	-	-	NULL
ANO6	196527	genome.wustl.edu	37	12	45741978	45741978	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142679.1	+1	validated	p.D171	0.991	159	0%	28	25%	-	-	-	-	-	NULL
ARID2	196528	genome.wustl.edu	37	12	46240707	46240707	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152641.2	+1	validated	p.F523V	1.000	237	0%	50	40%	-	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
AMIGO2	347902	genome.wustl.edu	37	12	47472313	47472313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143668.1	-1	validated	p.P158H	0.864	108	0%	148	14.9%	-	-	benign(0.422)	tolerated(0.11)	neutral(0.409)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
LOC100288986	100288986	genome.wustl.edu	37	12	47629353	47629353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343197.1	-1	model	p.A47T	0.196	11	0%	17	23.5%	-	-	-	-	-	NULL
FAM113B	91523	genome.wustl.edu	37	12	47629808	47629808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138371.1	+1	predicted	p.P321H	0.000	58	0%	118	15.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
HDAC7	51564	genome.wustl.edu	37	12	48191242	48191242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015401.3	-1	reviewed	p.M168V	0.993	56	0%	153	32.7%	-	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
COL2A1	1280	genome.wustl.edu	37	12	48368621	48368621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001844.4	-1	reviewed	p.Q1304R	1.000	91	0%	114	36%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_COLFI,HMMSmart_SM00038
COL2A1	1280	genome.wustl.edu	37	12	48372389	48372389	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001844.4	-1	reviewed	p.D962	0.694	19	0%	20	30%	-	-	-	-	-	HMMPfam_Collagen
SENP1	29843	genome.wustl.edu	37	12	48477430	48477430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014554.2	-1	validated	p.R166*	1.000	164	0%	88	44.3%	-	-	-	-	-	NULL
PFKM	5213	genome.wustl.edu	37	12	48536719	48536719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000289.5	+1	reviewed	p.R603Q	0.995	48	0%	47	46.8%	-	-	benign(0.007)	tolerated(0.43)	neutral(0.013)	HMMPfam_PFK,superfamily_Phosphofructokinase
ASB8	140461	genome.wustl.edu	37	12	48543613	48543613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024095.3	-1	validated	p.R135W	0.997	42	0%	54	35.2%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
OR10AD1	121275	genome.wustl.edu	37	12	48596596	48596596	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004134.1	-1	provisional	p.L160	0.000	100	0%	77	41.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF641	121274	genome.wustl.edu	37	12	48737361	48737361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152320.2	-1	validated	p.L238M	0.360	45	0%	79	39.2%	-	-	possibly_damaging(0.44)	tolerated(0.24)	neutral(0.181)	NULL
ARF3	377	genome.wustl.edu	37	12	49332794	49332794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001659.2	-1	reviewed	p.T161I	1.000	139	0%	135	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
WNT10B	7480	genome.wustl.edu	37	12	49360014	49360014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003394.2	-1	reviewed	p.G345D	1.000	33	0%	54	37%	-	-	probably_damaging(0.991)	tolerated(0.46)	neutral(0.456)	HMMPfam_wnt,HMMSmart_SM00097
MLL2	8085	genome.wustl.edu	37	12	49427717	49427717	+	Missense_Mutation	SNP	G	G	A	rs182159847	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.L3591F	1.000	37	0%	73	39.7%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49432210	49432210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.N2977Y	0.990	127	0%	177	39%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49433743	49433743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.S2604G	1.000	72	0%	113	14.2%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49443758	49443758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.V1205I	0.933	26	0%	53	32.1%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49444771	49444771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.A899S	0.881	50	0%	74	41.9%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49445444	49445444	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.P674	0.000	137	2.2%	162	10.5%	-	-	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49445763	49445763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.E568G	1.000	346	0%	477	35.8%	-	-	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49449095	49449095	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003482.3	-1	validated	p.K5Q	1.000	96	0%	122	40.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000246003	0	genome.wustl.edu	37	12	49690565	49690565	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501178	-1	known	NULL	0.147	13	0%	26	38.5%	-	-	-	-	-	-
TROAP	10024	genome.wustl.edu	37	12	49723190	49723190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005480.3	+1	validated	p.R373C	0.819	124	0%	168	40.5%	-	-	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
KCNH3	23416	genome.wustl.edu	37	12	49950176	49950176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012284.1	+1	validated	p.G831D	1.000	72	0%	127	11%	-	-	benign(0.036)	tolerated(0.05)	neutral(0.347)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49993776	49993776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032130.2	-1	validated	p.E549D	0.001	184	0%	137	36.5%	-	-	benign(0.256)	tolerated(0.33)	neutral(0.051)	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50190545	50190545	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433948	-1	known	p.A81T	0.034	24	0%	42	26.2%	-	-	-	-	-	NULL
ASIC1	41	genome.wustl.edu	37	12	50453726	50453726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020039.2	+1	reviewed	p.D183Y	1.000	52	0%	85	30.6%	-	-	possibly_damaging(0.832)	deleterious(0.02)	deleterious(0.700)	HMMPfam_ASC
SMARCD1	6602	genome.wustl.edu	37	12	50479963	50479963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003076.4	+1	reviewed	p.G66D	1.000	44	0%	67	34.3%	-	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
LIMA1	51474	genome.wustl.edu	37	12	50599785	50599785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113546.1	-1	validated	p.D233N	1.000	136	0%	71	9.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50745528	50745528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145475.1	-1	provisional	p.A1696V	0.000	140	0%	108	38.9%	-	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50748747	50748747	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145475.1	-1	provisional	p.K623T	0.001	76	0%	51	39.2%	-	-	benign(0.036)	deleterious(0.02)	neutral(0.385)	NULL
METTL7A	25840	genome.wustl.edu	37	12	51318825	51318825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014033.3	+1	validated	p.E2K	0.996	238	0%	95	38.9%	-	-	benign(0.017)	tolerated(0.14)	neutral(0.250)	NULL
TFCP2	7024	genome.wustl.edu	37	12	51489798	51489798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005653.4	-1	reviewed	p.A482V	1.000	206	0%	118	12.7%	-	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
SLC4A8	9498	genome.wustl.edu	37	12	51888777	51888777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039960.1	+1	validated	p.D940N	1.000	179	0%	75	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
SCN8A	6334	genome.wustl.edu	37	12	52200884	52200884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014191.2	+1	reviewed	p.R1872W	1.000	47	0%	51	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD33	341405	genome.wustl.edu	37	12	52282954	52282954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182608.3	+1	validated	p.T167M	1.000	49	0%	85	41.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ACVR1B	91	genome.wustl.edu	37	12	52370164	52370164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004302.3	+1	reviewed	p.G129C	0.997	205	0%	141	32.6%	-	-	possibly_damaging(0.567)	deleterious(0.04)	deleterious(0.543)	NULL
GRASP	160622	genome.wustl.edu	37	12	52404672	52404672	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181711.2	+1	provisional	p.L102	1.000	124	0%	226	36.3%	-	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
ENSG00000135477	0	genome.wustl.edu	37	12	52647505	52647505	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000257935	-1	known	p.V262	0.009	87	0%	138	28.3%	-	-	-	-	-	HMMPfam_Filament
KRT81	3887	genome.wustl.edu	37	12	52680258	52680258	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002281.3	-1	reviewed	p.G433	0.955	20	0%	32	37.5%	-	-	-	-	-	NULL
KRT6B	3854	genome.wustl.edu	37	12	52841348	52841348	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005555.3	-1	reviewed	p.G478	0.786	133	0%	118	34.7%	-	-	-	-	-	NULL
ENSG00000248214	0	genome.wustl.edu	37	12	53004758	53004758	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000507911	+1	known	NULL	0.000	25	0%	27	18.5%	-	-	-	-	-	-
KRT2	3849	genome.wustl.edu	37	12	53038807	53038807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000423.2	-1	reviewed	p.R639I	1.000	41	0%	41	41.5%	-	-	unknown(0)	-	-	NULL
KRT77	374454	genome.wustl.edu	37	12	53090174	53090174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175078.2	-1	reviewed	p.D267Y	1.000	148	0%	178	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT3	3850	genome.wustl.edu	37	12	53184620	53184620	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_057088.2	-1	reviewed	e8+2	1.000	173	0%	265	39.6%	-	-	-	-	-	-
KRT4	3851	genome.wustl.edu	37	12	53207637	53207637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002272.2	-1	reviewed	p.R143Q	0.882	79	0%	65	35.4%	-	-	benign(0.011)	tolerated(0.08)	neutral(0.300)	NULL
KRT78	196374	genome.wustl.edu	37	12	53233752	53233752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173352.2	-1	reviewed	p.A355V	0.001	40	0%	69	11.6%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_Filament
SOAT2	8435	genome.wustl.edu	37	12	53509332	53509332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003578.3	+1	reviewed	p.C201Y	1.000	28	3.6%	46	17.4%	-	-	possibly_damaging(0.818)	tolerated(1)	neutral(0.309)	HMMPfam_MBOAT
ITGB7	3695	genome.wustl.edu	37	12	53585680	53585680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000889.1	-1	provisional	p.R760H	1.000	71	0%	125	33.6%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Integrin_b_cyt
ITGB7	3695	genome.wustl.edu	37	12	53589872	53589872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000889.1	-1	provisional	p.H310Y	1.000	99	0%	142	11.3%	-	-	benign(0.314)	deleterious(0.01)	deleterious(0.504)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
SP7	121340	genome.wustl.edu	37	12	53722652	53722652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152860.1	-1	provisional	p.N192H	1.000	119	0%	170	31.8%	-	-	benign(0.022)	tolerated(1)	neutral(0.001)	NULL
SP7	121340	genome.wustl.edu	37	12	53722793	53722793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152860.1	-1	provisional	p.A145T	1.000	147	0%	178	33.7%	-	-	benign(0.134)	tolerated(0.12)	neutral(0.272)	NULL
SP1	6667	genome.wustl.edu	37	12	53804872	53804872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138473.2	+1	validated	p.G736S	0.665	90	1.1%	100	39%	-	-	possibly_damaging(0.916)	tolerated(0.31)	neutral(0.394)	NULL
NPFF	8620	genome.wustl.edu	37	12	53900915	53900915	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003717.2	-1	reviewed	p.S38	0.000	72	0%	70	31.4%	-	-	-	-	-	NULL
CBX5	23468	genome.wustl.edu	37	12	54651350	54651350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127321.1	-1	reviewed	p.R29C	1.000	201	0%	175	39.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
ITGA5	3678	genome.wustl.edu	37	12	54803305	54803305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000435631	-1	known	p.R99W	0.751	31	0%	29	31%	-	-	unknown(0)	-	-	NULL
NCKAP1L	3071	genome.wustl.edu	37	12	54903678	54903678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005337.4	+1	reviewed	p.R215I	1.000	208	0%	87	40.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nckap1
OR6C1	390321	genome.wustl.edu	37	12	55714751	55714751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005182.1	+1	provisional	p.A123V	1.000	116	0.9%	28	17.9%	-	-	possibly_damaging(0.898)	deleterious(0.01)	deleterious(0.760)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR6C75	390323	genome.wustl.edu	37	12	55759166	55759166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005497.1	+1	provisional	p.S91Y	0.960	209	0%	61	49.2%	-	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C2	341416	genome.wustl.edu	37	12	55846627	55846627	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054105.1	+1	provisional	p.V210	0.000	227	0%	51	43.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ITGA7	3679	genome.wustl.edu	37	12	56093654	56093654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002206.2	-1	reviewed	p.G264C	1.000	109	0%	188	10.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGA7	3679	genome.wustl.edu	37	12	56094118	56094118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144996.1	-1	reviewed	p.G244S	1.000	20	0%	31	25.8%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_Integrin alpha N-terminal domain
MMP19	4327	genome.wustl.edu	37	12	56230886	56230886	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002429.4	-1	reviewed	p.T487	0.000	115	0%	137	36.5%	-	-	-	-	-	NULL
MMP19	4327	genome.wustl.edu	37	12	56231451	56231451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002429.4	-1	reviewed	p.R359H	1.000	91	0%	94	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP19	4327	genome.wustl.edu	37	12	56232509	56232509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002429.4	-1	reviewed	p.S259N	0.004	133	0%	133	27.1%	-	-	benign(0.069)	tolerated(0.05)	neutral(0.350)	NULL
PMEL	6490	genome.wustl.edu	37	12	56348059	56348059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006928.3	-1	validated	p.R642H	0.000	152	0%	151	33.8%	-	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
RAB5B	5869	genome.wustl.edu	37	12	56380820	56380820	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002868.2	+1	validated	p.L26	1.000	87	0%	88	37.5%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERBB3	2065	genome.wustl.edu	37	12	56495472	56495472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001982.2	+1	reviewed	p.G1221D	1.000	82	0%	83	12%	-	-	possibly_damaging(0.647)	deleterious(0.01)	deleterious(0.633)	NULL
SMARCC2	6601	genome.wustl.edu	37	12	56558156	56558156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003075.3	-1	reviewed	p.A1167S	1.000	40	0%	68	35.3%	-	-	unknown(0)	deleterious(0)	-	NULL
RNF41	10193	genome.wustl.edu	37	12	56600253	56600253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005785.2	-1	reviewed	p.A311V	1.000	55	0%	45	40%	-	-	probably_damaging(1)	tolerated(0.74)	deleterious(0.501)	HMMPfam_USP8_interact
PAN2	9924	genome.wustl.edu	37	12	56715945	56715945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127460.2	-1	reviewed	p.A906D	1.000	119	0%	118	33.1%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_UCH,superfamily_Cysteine proteinases
PAN2	9924	genome.wustl.edu	37	12	56718411	56718411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127460.2	-1	reviewed	p.G561D	1.000	77	0%	87	44.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
PAN2	9924	genome.wustl.edu	37	12	56719124	56719124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127460.2	-1	reviewed	p.R492C	1.000	77	0%	106	28.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IL23A	51561	genome.wustl.edu	37	12	56733569	56733569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016584.2	+1	reviewed	p.S119N	0.921	124	0%	89	36%	-	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_IL6,superfamily_4_helix_cytokine
TIMELESS	8914	genome.wustl.edu	37	12	56822755	56822755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003920.3	-1	validated	p.R406C	1.000	123	0%	81	37%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
BAZ2A	11176	genome.wustl.edu	37	12	56995022	56995022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013449.3	-1	validated	p.F1414L	1.000	108	0%	125	34.4%	-	-	benign(0.032)	tolerated(0.75)	neutral(0.003)	HMMPfam_AT_hook,HMMSmart_SM00384
NACA	4666	genome.wustl.edu	37	12	57110722	57110722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113203.1	-1	validated	p.A1531V	0.000	31	0%	30	26.7%	-	-	probably_damaging(0.965)	-	-	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57397202	57397202	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014830.1	-1	provisional	p.L500	0.998	42	0%	54	40.7%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYO1A	4640	genome.wustl.edu	37	12	57430796	57430796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005379.2	-1	reviewed	p.R712H	1.000	130	0%	105	40%	-	-	possibly_damaging(0.482)	tolerated(0.56)	neutral(0.167)	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
MYO1A	4640	genome.wustl.edu	37	12	57441502	57441502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005379.2	-1	reviewed	p.Y78	0.993	14	0%	15	53.3%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
STAT6	6778	genome.wustl.edu	37	12	57498946	57498946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003153.4	-1	reviewed	p.P330H	0.202	40	0%	48	47.9%	-	-	benign(0.313)	tolerated(0.1)	neutral(0.384)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
LRP1	4035	genome.wustl.edu	37	12	57539021	57539021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.R197W	1.000	41	0%	45	22.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
LRP1	4035	genome.wustl.edu	37	12	57552188	57552188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.P522L	0.997	71	0%	121	33.1%	-	-	probably_damaging(0.982)	tolerated(0.3)	neutral(0.455)	NULL
LRP1	4035	genome.wustl.edu	37	12	57563003	57563003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.R1026C	0.998	19	0%	41	46.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
LRP1	4035	genome.wustl.edu	37	12	57579503	57579503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.R2218H	1.000	40	0%	90	48.9%	-	-	benign(0.396)	tolerated(0.15)	neutral(0.368)	superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57587358	57587358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.R2565H	1.000	41	0%	66	13.6%	-	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57594275	57594275	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.T3355	0.002	26	0%	40	30%	-	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1
LRP1	4035	genome.wustl.edu	37	12	57605736	57605736	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002332.2	+1	reviewed	p.L4429	0.279	302	0%	545	28.1%	-	-	-	-	-	NULL
R3HDM2	22864	genome.wustl.edu	37	12	57663127	57663127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014925.3	-1	validated	p.P551S	1.000	172	0%	103	35%	-	-	possibly_damaging(0.461)	deleterious(0.01)	deleterious(0.556)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57963139	57963139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004984.2	+1	reviewed	p.S307Y	1.000	48	0%	42	40.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
B4GALNT1	2583	genome.wustl.edu	37	12	58020745	58020745	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001478.3	-1	reviewed	e10-1	1.000	47	0%	77	40.3%	-	-	-	-	-	-
B4GALNT1	2583	genome.wustl.edu	37	12	58024024	58024024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001478.3	-1	reviewed	p.L208R	0.971	96	0%	192	40.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AGAP2	116986	genome.wustl.edu	37	12	58122156	58122156	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122772.1	-1	validated	p.K854	1.000	51	0%	100	43%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
AGAP2	116986	genome.wustl.edu	37	12	58125203	58125203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122772.1	-1	validated	p.K697N	1.000	101	1%	174	32.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
METTL1	4234	genome.wustl.edu	37	12	58163106	58163106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005371.5	-1	reviewed	p.R219C	1.000	71	0%	104	33.7%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Methyltransf_4
METTL1	4234	genome.wustl.edu	37	12	58163701	58163701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005371.5	-1	reviewed	p.G105S	1.000	58	0%	88	40.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Methyltransf_4,superfamily_SSF53335
AVIL	10677	genome.wustl.edu	37	12	58197122	58197122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006576.3	-1	reviewed	p.K624E	0.998	157	0%	99	40.4%	-	-	benign(0.419)	deleterious(0.03)	deleterious(0.500)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
LRIG3	121227	genome.wustl.edu	37	12	59284509	59284509	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153377.3	-1	provisional	p.D151	1.000	158	0%	31	19.4%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
SLC16A7	9194	genome.wustl.edu	37	12	60098729	60098729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004731.3	+1	provisional	p.Q49H	0.394	102	0%	21	28.6%	-	-	benign(0.019)	tolerated(0.17)	neutral(0.060)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MON2	23041	genome.wustl.edu	37	12	62930999	62930999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015026.2	+1	validated	p.A657T	1.000	152	0%	44	27.3%	-	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	NULL
PPM1H	57460	genome.wustl.edu	37	12	63195889	63195889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020700.1	-1	validated	p.G155R	1.000	4	0.000	10	0.500	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
ENSG00000250314	0	genome.wustl.edu	37	12	63397985	63397985	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000514535	-1	known	NULL	1.000	114	0%	126	33.3%	-	-	-	-	-	-
TMEM5	10329	genome.wustl.edu	37	12	64174871	64174871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014254.1	+1	provisional	p.F81C	0.987	116	0%	179	38.5%	-	-	benign(0.072)	tolerated(0.09)	neutral(0.301)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64505575	64505575	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020762.2	+1	validated	p.D651	1.000	141	0%	69	33.3%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
XPOT	11260	genome.wustl.edu	37	12	64808716	64808716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007235.3	+1	reviewed	p.I30M	1.000	153	0%	77	33.8%	-	-	benign(0.046)	tolerated(0.11)	neutral(0.274)	superfamily_ARM-type_fold
TBK1	29110	genome.wustl.edu	37	12	64889478	64889478	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013254.2	+1	reviewed	e14-1	1.000	90	0%	58	12.1%	-	-	-	-	-	-
TBK1	29110	genome.wustl.edu	37	12	64895146	64895146	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013254.2	+1	reviewed	p.N725	0.997	242	0%	124	37.1%	-	-	-	-	-	NULL
HELB	92797	genome.wustl.edu	37	12	66703640	66703640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033647.2	+1	reviewed	p.T311I	0.999	115	0%	55	38.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HELB	92797	genome.wustl.edu	37	12	66703855	66703855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033647.2	+1	reviewed	p.E383K	0.005	108	0.9%	44	38.6%	-	-	benign(0)	tolerated(1)	-	NULL
HELB	92797	genome.wustl.edu	37	12	66731874	66731874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033647.2	+1	reviewed	p.E1086*	0.069	112	0%	31	51.6%	-	-	-	-	-	NULL
GRIP1	23426	genome.wustl.edu	37	12	66742822	66742822	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021150.3	-1	reviewed	p.R1070*	0.885	290	0%	133	33.8%	-	-	-	-	-	NULL
GRIP1	23426	genome.wustl.edu	37	12	66859188	66859188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021150.3	-1	reviewed	p.A247T	1.000	65	0%	25	40%	-	-	possibly_damaging(0.714)	deleterious(0.01)	deleterious(0.663)	superfamily_PDZ domain-like
RAP1B	5908	genome.wustl.edu	37	12	69042543	69042543	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010942.1	+1	validated	p.G13	0.183	205	0%	131	36.6%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDM2	4193	genome.wustl.edu	37	12	69230501	69230501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002392.3	+1	reviewed	p.F297S	1.000	162	0%	100	39%	-	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	NULL
RAB3IP	117177	genome.wustl.edu	37	12	70206610	70206610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175623.2	+1	validated	p.G411R	1.000	153	0%	151	33.1%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
CNOT2	4848	genome.wustl.edu	37	12	70724238	70724238	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014515.4	+1	provisional	p.F186	1.000	115	0%	16	50%	-	-	-	-	-	NULL
ENSG00000246966	0	genome.wustl.edu	37	12	70931897	70931897	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501222	+1	known	NULL	0.039	139	0%	51	39.2%	-	-	-	-	-	-
PTPRR	5801	genome.wustl.edu	37	12	71139848	71139848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002849.2	-1	reviewed	p.E253*	1.000	228	0%	54	37%	-	-	-	-	-	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72020148	72020148	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144982.4	-1	validated	p.I1403M	1.000	165	0%	55	43.6%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMSmart_SM00386,superfamily_Protein prenylyltransferase
TMEM19	55266	genome.wustl.edu	37	12	72080518	72080518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018279.3	+1	validated	p.V20F	0.990	131	0%	184	35.3%	-	-	possibly_damaging(0.775)	deleterious(0.03)	deleterious(0.653)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72278647	72278647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022771.4	+1	reviewed	p.D134N	1.000	269	0%	75	34.7%	-	-	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72288550	72288550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022771.4	+1	reviewed	p.D265N	1.000	102	0%	28	21.4%	-	-	benign(0.102)	tolerated(0.5)	neutral(0.018)	NULL
TRHDE	29953	genome.wustl.edu	37	12	72936115	72936115	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013381.2	+1	reviewed	p.S544	1.000	288	0%	51	41.2%	-	-	-	-	-	superfamily_SSF55486
KCNC2	3747	genome.wustl.edu	37	12	75444534	75444534	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139137.2	-1	reviewed	p.E417	0.898	62	0%	14	35.7%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KRR1	11103	genome.wustl.edu	37	12	75905293	75905293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007043.6	-1	validated	p.D29Y	1.000	125	0%	43	11.6%	-	-	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	NULL
PHLDA1	22822	genome.wustl.edu	37	12	76424548	76424548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007350.3	-1	reviewed	p.P325H	0.980	128	0.8%	249	35.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
SYT1	6857	genome.wustl.edu	37	12	79679602	79679602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135805.1	+1	validated	p.A68T	1.000	328	0%	85	28.2%	-	-	benign(0.1)	tolerated(0.25)	neutral(0.044)	NULL
PPP1R12A	4659	genome.wustl.edu	37	12	80190985	80190985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143885.1	-1	reviewed	p.T761M	1.000	577	0%	177	37.9%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80632651	80632651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343203.1	+1	model	p.A221T	1.000	73	0%	38	31.6%	-	-	benign(0.167)	tolerated(0.3)	neutral(0.043)	NULL
MYF6	4618	genome.wustl.edu	37	12	81101837	81101837	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002469.2	+1	reviewed	p.F113	1.000	36	0%	66	37.9%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
LIN7A	8825	genome.wustl.edu	37	12	81242057	81242057	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004664.2	-1	validated	p.P82	0.001	127	0%	40	42.5%	-	-	-	-	-	HMMSmart_SM00569,HMMPfam_L27
PPFIA2	8499	genome.wustl.edu	37	12	81768417	81768417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003625.2	-1	reviewed	p.T421I	1.000	131	0%	25	24%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CCDC59	29080	genome.wustl.edu	37	12	82750941	82750941	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014167.4	-1	validated	p.R88*	0.448	299	0%	282	36.5%	-	-	-	-	-	NULL
TMTC2	160335	genome.wustl.edu	37	12	83250987	83250987	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152588.1	+1	provisional	p.L94	0.996	142	0%	95	43.2%	-	-	-	-	-	NULL
TSPAN19	144448	genome.wustl.edu	37	12	85408290	85408290	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100917.1	-1	validated	p.K241	0.998	123	0%	19	31.6%	-	-	-	-	-	NULL
TSPAN19	144448	genome.wustl.edu	37	12	85421700	85421700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100917.1	-1	validated	p.E81K	0.013	133	0%	36	44.4%	-	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	HMMPfam_Tetraspannin
LRRIQ1	84125	genome.wustl.edu	37	12	85441275	85441275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000393212	+1	known	p.I235M	0.000	48	0%	28	39.3%	-	-	-	-	-	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85449556	85449556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079910.1	+1	validated	p.R329*	0.018	96	0%	44	25%	-	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85449786	85449786	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079910.1	+1	validated	p.Y405	0.000	55	0%	31	32.3%	-	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85515614	85515614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079910.1	+1	validated	p.E1173*	0.970	98	0%	54	31.5%	-	-	-	-	-	NULL
MGAT4C	25834	genome.wustl.edu	37	12	86373201	86373201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013244.3	-1	validated	p.F435V	1.000	96	0%	20	50%	-	-	possibly_damaging(0.612)	deleterious(0.04)	deleterious(0.561)	NULL
CEP290	80184	genome.wustl.edu	37	12	88452773	88452773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025114.3	-1	reviewed	p.R2224W	0.941	225	0%	67	38.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP2B1	490	genome.wustl.edu	37	12	89992420	89992420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001323.1	-1	reviewed	p.S1151Y	1.000	128	0%	38	42.1%	-	-	benign(0.071)	deleterious(0.01)	neutral(0.411)	NULL
ATP2B1	490	genome.wustl.edu	37	12	90010804	90010804	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001682.2	-1	reviewed	p.I614	1.000	236	0%	57	31.6%	-	-	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
C12orf12	196477	genome.wustl.edu	37	12	91347869	91347869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152638.2	-1	predicted	p.Q217H	0.998	72	0%	126	42.9%	-	-	unknown(0)	tolerated(0.47)	-	NULL
PLEKHG7	440107	genome.wustl.edu	37	12	93147945	93147945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004330.2	+1	validated	p.Y132C	1.000	110	0%	38	34.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RhoGEF,superfamily_DH-domain
PLEKHG7	440107	genome.wustl.edu	37	12	93150152	93150152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004330.2	+1	validated	p.K229Q	1.000	73	0%	28	35.7%	-	-	benign(0.183)	tolerated(0.5)	neutral(0.027)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLXNC1	10154	genome.wustl.edu	37	12	94543431	94543431	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005761.1	+1	provisional	p.G228	0.000	33	0%	52	36.5%	-	-	-	-	-	superfamily_Sema
PLXNC1	10154	genome.wustl.edu	37	12	94603399	94603399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005761.1	+1	provisional	p.E491D	0.000	187	0%	134	39.6%	-	-	benign(0)	tolerated(1)	-	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
PLXNC1	10154	genome.wustl.edu	37	12	94648590	94648590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005761.1	+1	provisional	p.S970L	0.999	35	0%	31	48.4%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
CCDC41	51134	genome.wustl.edu	37	12	94703807	94703807	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042399.1	-1	validated	p.R630*	1.000	245	0%	40	30%	-	-	-	-	-	NULL
CCDC41	51134	genome.wustl.edu	37	12	94769713	94769713	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042399.1	-1	validated	p.L294F	0.988	184	0%	32	46.9%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
RBMS2P1	643427	genome.wustl.edu	37	12	94818211	94818211	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000393113	-1	known	p.G148	1.000	115	0%	58	41.4%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NR2C1	7181	genome.wustl.edu	37	12	95456349	95456349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003297.2	-1	reviewed	p.P74S	1.000	178	0%	141	39.7%	-	-	benign(0.018)	tolerated(0.42)	neutral(0.015)	NULL
VEZT	55591	genome.wustl.edu	37	12	95660316	95660316	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017599.3	+1	validated	p.D206	0.998	218	0%	121	28.1%	-	-	-	-	-	NULL
USP44	84101	genome.wustl.edu	37	12	95927124	95927124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042403.1	-1	validated	p.K303N	0.999	114	0%	62	16.1%	-	-	benign(0.008)	tolerated(0.61)	neutral(0.004)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP44	84101	genome.wustl.edu	37	12	95927822	95927822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042403.1	-1	validated	p.E71K	1.000	184	0%	97	41.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-UBP,HMMSmart_SM00290
USP44	84101	genome.wustl.edu	37	12	95927893	95927893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042403.1	-1	validated	p.V47A	1.000	156	0%	65	16.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-UBP,HMMSmart_SM00290
ELK3	2004	genome.wustl.edu	37	12	96640822	96640822	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005230.2	+1	reviewed	p.S104	0.992	92	0%	130	30%	-	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
LOC121456	121456	genome.wustl.edu	37	12	98848821	98848821	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_016411.2	-1	model	NULL	0.182	70	0%	58	29.3%	-	-	-	-	-	-
ENSG00000227825	0	genome.wustl.edu	37	12	98849734	98849734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370696	-1	known	p.G55E	0.972	140	0%	161	28.6%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
TMPO	7112	genome.wustl.edu	37	12	98941420	98941420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032283.2	+1	reviewed	p.E383D	0.994	126	0%	112	35.7%	-	-	possibly_damaging(0.77)	tolerated(0.65)	neutral(0.289)	NULL
APAF1	317	genome.wustl.edu	37	12	99060022	99060022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181861.1	+1	reviewed	p.E417K	1.000	261	0%	148	31.8%	-	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_WD40 repeat-like
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452812	100452812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015054.1	-1	validated	p.S748Y	0.217	116	0%	58	36.2%	-	-	benign(0.063)	tolerated(0.1)	neutral(0.290)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452915	100452915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015054.1	-1	validated	p.R714W	1.000	120	0%	82	35.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100551442	100551442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017600.1	-1	provisional	p.T52A	0.005	21	0%	39	38.5%	-	-	-	-	-	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100562730	100562730	+	RNA	SNP	C	C	T	rs185446879	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024261.1	-1	validated	NULL	0.117	204	1%	135	42.2%	-	-	-	-	-	-
UTP20	27340	genome.wustl.edu	37	12	101705569	101705569	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014503.2	+1	validated	p.T768	0.023	121	0%	67	43.3%	-	-	-	-	-	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101736293	101736293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014503.2	+1	validated	p.L1391I	1.000	135	0%	66	40.9%	-	-	possibly_damaging(0.866)	tolerated(0.29)	neutral(0.365)	superfamily_ARM repeat
SPIC	121599	genome.wustl.edu	37	12	101871414	101871414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152323.1	+1	provisional	p.L28I	0.000	129	0%	75	30.7%	-	-	benign(0.086)	tolerated(0.45)	neutral(0.018)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102141004	102141004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024312.4	-1	reviewed	p.R1237W	1.000	225	0%	124	36.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAB2	55576	genome.wustl.edu	37	12	104078780	104078780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017564.9	+1	reviewed	p.S972Y	0.000	348	0%	259	29.7%	-	-	benign(0)	tolerated(1)	-	superfamily_BIgH3_FAS1,HMMSmart_EGF
STAB2	55576	genome.wustl.edu	37	12	104118761	104118761	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017564.9	+1	reviewed	p.G1564	0.562	92	0%	37	45.9%	-	-	-	-	-	HMMSmart_EGF,superfamily_SSF57196
TDG	6996	genome.wustl.edu	37	12	104380733	104380733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003211.4	+1	reviewed	p.S366	0.005	267	0%	105	18.1%	-	-	-	-	-	NULL
SLC41A2	84102	genome.wustl.edu	37	12	105199022	105199022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032148.3	-1	validated	p.A544T	1.000	131	0%	25	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MgtE
SLC41A2	84102	genome.wustl.edu	37	12	105321773	105321773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032148.3	-1	validated	p.G178D	1.000	165	0%	129	26.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1033	23325	genome.wustl.edu	37	12	105520953	105520953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015275.1	+1	validated	p.N362T	0.999	102	0%	77	33.8%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
KIAA1033	23325	genome.wustl.edu	37	12	105553780	105553780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015275.1	+1	validated	p.H972Y	1.000	52	0%	16	37.5%	-	-	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
POLR3B	55703	genome.wustl.edu	37	12	106903245	106903245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018082.5	+1	validated	p.P1107L	1.000	104	0%	67	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
MTERFD3	80298	genome.wustl.edu	37	12	107371357	107371357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033050.1	-1	validated	p.A379E	1.000	138	0%	97	36.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PWP1	11137	genome.wustl.edu	37	12	108102718	108102718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007062.1	+1	provisional	p.G365S	1.000	262	0%	59	23.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ASCL4	121549	genome.wustl.edu	37	12	108169146	108169146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203436.2	+1	validated	p.R52C	0.000	11	0%	17	58.8%	-	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
SART3	9733	genome.wustl.edu	37	12	108920130	108920130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014706.3	-1	reviewed	p.V706I	0.994	70	0%	75	36%	-	-	unknown(0)	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ISCU	23479	genome.wustl.edu	37	12	108962609	108962609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213595.2	+1	reviewed	p.L141M	1.000	143	0%	100	36%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_NifU_N,superfamily_SufE/NifU
SELPLG	6404	genome.wustl.edu	37	12	109016915	109016915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003006.3	-1	reviewed	p.P380L	0.000	38	0%	55	27.3%	-	-	benign(0.117)	tolerated(0.08)	neutral(0.309)	NULL
CORO1C	23603	genome.wustl.edu	37	12	109046161	109046161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014325.2	-1	reviewed	p.T296	0.996	190	0%	228	37.7%	-	-	-	-	-	superfamily_WD40 repeat-like,HMMPfam_DUF1900
SSH1	54434	genome.wustl.edu	37	12	109198957	109198957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018984.3	-1	validated	p.R277C	1.000	130	0%	118	33.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEK_C,superfamily_DEK C-terminal domain
SSH1	54434	genome.wustl.edu	37	12	109210899	109210899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018984.3	-1	validated	p.R106W	0.975	66	0%	106	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DAO	1610	genome.wustl.edu	37	12	109286782	109286782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001917.4	+1	reviewed	p.F159L	1.000	447	0%	303	39.9%	-	-	benign(0.077)	tolerated(0.34)	neutral(0.028)	HMMPfam_DAO,superfamily_Nucleotide-binding domain
SVOP	55530	genome.wustl.edu	37	12	109316565	109316565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018711.2	-1	validated	p.S292L	0.009	124	0%	70	32.9%	-	-	possibly_damaging(0.683)	deleterious(0.02)	deleterious(0.627)	NULL
ACACB	32	genome.wustl.edu	37	12	109661652	109661652	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001093.3	+1	reviewed	p.D1275	0.124	188	0%	225	35.1%	-	-	-	-	-	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109665276	109665276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001093.3	+1	reviewed	p.P1328L	1.000	23	0%	40	45%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109703061	109703061	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001093.3	+1	reviewed	p.F2363	0.997	46	0%	56	16.1%	-	-	-	-	-	NULL
MYO1H	283446	genome.wustl.edu	37	12	109826589	109826589	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101421.3	+1	provisional	p.Y22	0.997	109	0%	56	28.6%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1H	283446	genome.wustl.edu	37	12	109870711	109870711	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101421.3	+1	provisional	p.S647	0.704	71	0%	47	51.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
UBE3B	89910	genome.wustl.edu	37	12	109936071	109936071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130466.2	+1	reviewed	p.R285C	1.000	219	0%	104	34.6%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109939239	109939239	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130466.2	+1	reviewed	p.I394	1.000	126	0%	63	41.3%	-	-	-	-	-	NULL
C12orf34	84915	genome.wustl.edu	37	12	110205947	110205947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032829.2	+1	validated	p.Q71H	1.000	29	0%	67	28.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C12orf34	84915	genome.wustl.edu	37	12	110206322	110206322	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032829.2	+1	validated	p.L196	1.000	5	0.000	12	0.583	-	-	-	-	-	NULL
TRPV4	59341	genome.wustl.edu	37	12	110252352	110252352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021625.4	-1	reviewed	p.D84N	1.000	46	0%	59	33.9%	-	-	possibly_damaging(0.608)	deleterious(0)	deleterious(0.655)	NULL
GIT2	9815	genome.wustl.edu	37	12	110383073	110383073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_057169.3	-1	reviewed	p.A575T	0.869	54	3.7%	46	37%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
ATP2A2	488	genome.wustl.edu	37	12	110778800	110778800	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170665.3	+1	reviewed	e14+1	1.000	44	0%	25	32%	-	-	-	-	-	-
ANAPC7	51434	genome.wustl.edu	37	12	110813874	110813874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016238.2	-1	reviewed	p.L536P	1.000	87	0%	64	53.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ANAPC7	51434	genome.wustl.edu	37	12	110813971	110813971	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000452721	-1	known	p.W496*	1.000	119	0%	76	38.2%	-	-	benign(0.075)	tolerated(0.55)	neutral(0.012)	HMMSmart_SM00028,superfamily_TPR-like
VPS29	51699	genome.wustl.edu	37	12	110930838	110930838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_057180.1	-1	reviewed	p.P136T	1.000	186	0%	119	29.4%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_SSF56300
TCTN1	79600	genome.wustl.edu	37	12	111082930	111082930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001082538.2	+1	reviewed	p.R497M	0.003	34	0%	30	43.3%	-	-	unknown(0)	-	-	NULL
CCDC63	160762	genome.wustl.edu	37	12	111322047	111322047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152591.1	+1	provisional	p.R356Q	0.003	97	0%	64	34.4%	-	-	possibly_damaging(0.948)	tolerated(0.31)	neutral(0.418)	NULL
CCDC63	160762	genome.wustl.edu	37	12	111336736	111336736	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152591.1	+1	provisional	e9-1	1.000	76	0%	49	16.3%	-	-	-	-	-	-
CUX2	23316	genome.wustl.edu	37	12	111785566	111785566	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015267.3	+1	validated	p.Q1300*	1.000	39	0%	73	34.2%	-	-	-	-	-	NULL
ACAD10	80724	genome.wustl.edu	37	12	112159506	112159506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136538.1	+1	reviewed	p.P373S	0.999	189	0%	322	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
NAA25	80018	genome.wustl.edu	37	12	112528621	112528621	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024953.3	-1	reviewed	p.A64	0.256	110	0%	55	12.7%	-	-	-	-	-	superfamily_TPR-like
TRAFD1	10906	genome.wustl.edu	37	12	112590287	112590287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143906.1	+1	validated	p.R559H	0.977	173	0%	142	10.6%	-	-	benign(0.066)	tolerated(0.23)	neutral(0.046)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112628631	112628631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001109662.2	-1	validated	p.T2722I	1.000	47	0%	72	27.8%	-	-	possibly_damaging(0.746)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112688153	112688153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001109662.2	-1	validated	p.V827M	1.000	52	0%	21	57.1%	-	-	probably_damaging(0.991)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112694253	112694253	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000311694	-1	known	p.E529G	0.867	85	0%	45	40%	-	-	-	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112697034	112697034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001109662.2	-1	validated	p.M538T	1.000	119	0%	37	16.2%	-	-	benign(0.026)	deleterious(0.03)	neutral(0.365)	NULL
RPL6	6128	genome.wustl.edu	37	12	112843140	112843140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000970.3	-1	reviewed	p.A252D	1.000	27	0%	30	30%	-	-	benign(0.118)	tolerated(0.32)	neutral(0.034)	HMMPfam_Ribosomal_L6e
OAS1	4938	genome.wustl.edu	37	12	113346400	113346400	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032409.1	+1	reviewed	p.V80	1.000	83	0%	60	43.3%	-	-	-	-	-	PatternScan_25A_SYNTH_1,superfamily_Nucleotidyltransferase
OAS3	4940	genome.wustl.edu	37	12	113379475	113379475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006187.2	+1	reviewed	p.R93L	0.000	96	0%	132	32.6%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	superfamily_Nucleotidyltransferase
LOC100287897	100287897	genome.wustl.edu	37	12	113405402	113405402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343215.1	-1	model	p.R3Q	0.003	52	0%	33	27.3%	-	-	-	-	-	NULL
OAS2	4939	genome.wustl.edu	37	12	113436093	113436093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016817.2	+1	reviewed	p.D296Y	0.832	135	0%	58	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_25A_SYNTH_2,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
RASAL1	8437	genome.wustl.edu	37	12	113543593	113543593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004658.1	-1	reviewed	p.R585C	0.997	34	0%	70	12.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,superfamily_PH domain-like
DDX54	79039	genome.wustl.edu	37	12	113618745	113618745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001111322.1	-1	reviewed	p.F98S	1.000	47	0%	107	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TPCN1	53373	genome.wustl.edu	37	12	113722564	113722564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143819.1	+1	validated	p.V553I	1.000	240	0%	343	41.1%	-	-	benign(0.002)	tolerated(0.78)	neutral(0.001)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TPCN1	53373	genome.wustl.edu	37	12	113724871	113724871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143819.1	+1	validated	p.V608M	1.000	51	0%	89	37.1%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SLC24A6	80024	genome.wustl.edu	37	12	113737727	113737727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024959.2	-1	validated	p.S537N	1.000	45	0%	62	41.9%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Na_Ca_ex
SLC24A6	80024	genome.wustl.edu	37	12	113737766	113737766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024959.2	-1	validated	p.G524E	0.992	39	0%	64	34.4%	-	-	benign(0.383)	tolerated(0.58)	neutral(0.128)	HMMPfam_Na_Ca_ex
LOC100287933	100287933	genome.wustl.edu	37	12	113906261	113906261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343216.1	+1	model	p.R276H	0.000	29	0%	58	34.5%	-	-	-	-	-	NULL
RBM19	9904	genome.wustl.edu	37	12	114380179	114380179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016196.3	-1	reviewed	p.V563M	0.555	29	0%	36	38.9%	-	-	benign(0.02)	tolerated(0.65)	neutral(0.004)	NULL
RBM19	9904	genome.wustl.edu	37	12	114384226	114384226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016196.3	-1	reviewed	p.A488T	0.000	117	0%	122	25.4%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
TBX5	6910	genome.wustl.edu	37	12	114832700	114832700	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000192.3	-1	reviewed	e5-2	1.000	83	0%	126	34.9%	-	-	-	-	-	-
MED13L	23389	genome.wustl.edu	37	12	116421304	116421304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015335.3	-1	validated	p.I1525V	0.997	169	0%	52	28.8%	-	-	unknown(0)	tolerated(0.4)	-	HMMPfam_TRAP_240kDa
MED13L	23389	genome.wustl.edu	37	12	116444209	116444209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015335.3	-1	validated	p.D749G	1.000	106	0%	23	30.4%	-	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
FBXW8	26259	genome.wustl.edu	37	12	117465251	117465251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153348.2	+1	reviewed	p.V532M	1.000	48	0%	92	39.1%	-	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
FBXW8	26259	genome.wustl.edu	37	12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153348.2	+1	reviewed	p.A562V	0.996	59	0%	74	32.4%	-	-	benign(0.019)	tolerated(0.24)	neutral(0.038)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
NOS1	4842	genome.wustl.edu	37	12	117691504	117691504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000620.2	-1	reviewed	p.S863P	0.999	116	0%	66	31.8%	-	-	probably_damaging(0.978)	tolerated(0.18)	deleterious(0.476)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
KSR2	283455	genome.wustl.edu	37	12	118298113	118298113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173598.4	-1	validated	p.R73C	1.000	27	0%	42	42.9%	-	-	possibly_damaging(0.936)	deleterious(0.03)	deleterious(0.746)	NULL
KSR2	283455	genome.wustl.edu	37	12	118405936	118405936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173598.4	-1	validated	p.R13M	1.000	158	0%	293	42%	-	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
CCDC60	160777	genome.wustl.edu	37	12	119960800	119960800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178499.3	+1	validated	p.S366Y	0.007	188	0%	84	31%	-	-	possibly_damaging(0.805)	deleterious(0.03)	deleterious(0.667)	NULL
CIT	11113	genome.wustl.edu	37	12	120210697	120210697	+	Silent	SNP	C	C	T	rs141771302	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007174.1	-1	validated	p.T653	0.002	38	0%	29	44.8%	-	-	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120260629	120260629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007174.1	-1	validated	p.R369H	1.000	92	0%	61	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like)
GCN1L1	10985	genome.wustl.edu	37	12	120587831	120587831	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006836.1	-1	validated	p.F1442	0.932	46	2.2%	66	34.8%	-	-	-	-	-	superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120622633	120622633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006836.1	-1	validated	p.R60Q	1.000	86	0%	67	47.8%	-	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	superfamily_ARM repeat
RNF10	9921	genome.wustl.edu	37	12	120995216	120995216	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014868.4	+1	reviewed	p.T259	0.999	196	0%	123	26%	-	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
UNC119B	84747	genome.wustl.edu	37	12	121154543	121154543	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080533.1	+1	provisional	e3+1	1.000	222	0%	261	37.2%	-	-	-	-	-	-
OASL	8638	genome.wustl.edu	37	12	121465607	121465607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003733.2	-1	validated	p.R224M	0.105	54	0%	54	42.6%	-	-	possibly_damaging(0.91)	tolerated(0.07)	deleterious(0.681)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
CAMKK2	10645	genome.wustl.edu	37	12	121691112	121691112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006549.3	-1	reviewed	p.E357D	1.000	145	0%	84	38.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CLIP1	6249	genome.wustl.edu	37	12	122763406	122763406	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002956.2	-1	validated	p.L1272	0.354	80	0%	86	40.7%	-	-	-	-	-	NULL
CLIP1	6249	genome.wustl.edu	37	12	122773072	122773072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002956.2	-1	validated	p.S1193Y	1.000	191	0%	162	35.8%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
CLIP1	6249	genome.wustl.edu	37	12	122839719	122839719	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002956.2	-1	validated	p.T382	0.844	27	0%	52	38.5%	-	-	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123014669	123014669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014708.4	+1	reviewed	p.V20A	0.886	172	0%	121	18.2%	-	-	benign(0.282)	tolerated(0.51)	neutral(0.095)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123072260	123072260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014708.4	+1	reviewed	p.D1245Y	0.798	232	0%	237	36.7%	-	-	benign(0.135)	deleterious(0.02)	neutral(0.395)	NULL
HIP1R	9026	genome.wustl.edu	37	12	123344622	123344622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003959.1	+1	validated	p.K832E	1.000	23	0%	40	32.5%	-	-	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,superfamily_SSF109885
ABCB9	23457	genome.wustl.edu	37	12	123424696	123424696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019625.3	-1	reviewed	p.P569S	1.000	20	0%	25	28%	-	-	benign(0.293)	tolerated(0.09)	neutral(0.387)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARL6IP4	51329	genome.wustl.edu	37	12	123467050	123467050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018694.2	+1	validated	p.I331V	1.000	118	0%	263	30%	-	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	HMMPfam_SR-25
MPHOSPH9	10198	genome.wustl.edu	37	12	123682840	123682840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022782.2	-1	validated	p.R508H	0.710	79	0%	61	31.1%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123780584	123780584	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018183.3	-1	validated	p.P1350	0.080	235	0%	132	28.8%	-	-	-	-	-	NULL
SBNO1	55206	genome.wustl.edu	37	12	123801828	123801828	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018183.3	-1	validated	p.R958*	1.000	159	0%	100	42%	-	-	-	-	-	NULL
TMED2	10959	genome.wustl.edu	37	12	124071320	124071320	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006815.3	+1	validated	p.I69M	0.989	111	0%	160	29.4%	-	-	possibly_damaging(0.606)	tolerated(0.16)	neutral(0.269)	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain
GTF2H3	2967	genome.wustl.edu	37	12	124130037	124130037	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001516.3	+1	provisional	p.V43	1.000	231	0%	145	35.2%	-	-	-	-	-	HMMPfam_Tfb4
TCTN2	79867	genome.wustl.edu	37	12	124175196	124175196	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024809.3	+1	validated	p.A336	0.000	112	0%	82	30.5%	-	-	-	-	-	HMMPfam_DUF1619
ATP6V0A2	23545	genome.wustl.edu	37	12	124221799	124221799	+	Missense_Mutation	SNP	G	G	A	rs188879714	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012463.3	+1	reviewed	p.R340Q	0.000	42	0%	22	22.7%	-	-	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124272488	124272488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207437.3	+1	validated	p.R459Q	1.000	50	0%	59	18.6%	-	-	possibly_damaging(0.941)	tolerated(0.24)	neutral(0.424)	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124335512	124335512	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207437.3	+1	validated	p.T1942	0.822	36	0%	41	31.7%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124401016	124401016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207437.3	+1	validated	p.N3461D	0.997	113	0%	155	11%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124413889	124413889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207437.3	+1	validated	p.E4007V	0.991	96	0%	106	34%	-	-	benign(0.043)	tolerated(0.06)	neutral(0.325)	HMMPfam_Dynein_heavy
DNAH10	196385	genome.wustl.edu	37	12	124416573	124416573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207437.3	+1	validated	p.R4287K	0.998	77	0%	117	42.7%	-	-	benign(0.032)	tolerated(0.43)	neutral(0.015)	HMMPfam_Dynein_heavy
NCOR2	9612	genome.wustl.edu	37	12	124810005	124810005	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006312.3	-1	validated	p.D2503	0.953	12	0%	23	30.4%	-	-	-	-	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124819115	124819115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006312.3	-1	validated	p.A2161T	0.004	8	0.000	24	0.375	-	-	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124825248	124825248	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006312.3	-1	validated	p.P1753	0.108	52	0%	163	36.8%	-	-	-	-	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124887049	124887049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006312.3	-1	validated	p.R514H	0.995	64	0%	126	35.7%	-	-	unknown(0)	deleterious(0.01)	-	NULL
TMEM132C	92293	genome.wustl.edu	37	12	128899514	128899514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000435159	+1	known	p.V80A	0.998	124	0%	75	34.7%	-	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	128900084	128900084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136103.2	+1	provisional	p.S186Y	0.821	18	0%	28	39.3%	-	-	possibly_damaging(0.795)	tolerated(0.06)	deleterious(0.621)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	129180474	129180474	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136103.2	+1	provisional	p.F473	0.917	32	0%	45	40%	-	-	-	-	-	NULL
TMEM132C	92293	genome.wustl.edu	37	12	129189956	129189956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136103.2	+1	provisional	p.D703Y	0.976	10	0%	22	36.4%	-	-	benign(0.241)	deleterious(0.04)	neutral(0.373)	NULL
FZD10	11211	genome.wustl.edu	37	12	130647840	130647840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007197.2	+1	reviewed	p.S118F	0.998	15	0%	32	37.5%	-	-	possibly_damaging(0.918)	deleterious(0.03)	deleterious(0.733)	superfamily_Frizzled_Cys-rich,HMMPfam_Fz,HMMSmart_FRI
PIWIL1	9271	genome.wustl.edu	37	12	130846097	130846097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004764.3	+1	reviewed	p.R641W	0.989	216	0%	110	36.4%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
RIMBP2	23504	genome.wustl.edu	37	12	130921489	130921489	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015347.4	-1	validated	p.S651	0.164	13	0%	36	30.6%	-	-	-	-	-	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130926776	130926776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015347.4	-1	validated	p.L357H	0.998	186	0%	290	12.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GPR133	283383	genome.wustl.edu	37	12	131569119	131569119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198827.3	+1	validated	p.A528T	0.242	79	0%	113	31.9%	-	-	benign(0.004)	tolerated(0.53)	neutral(0.007)	HMMPfam_GPS,HMMSmart_SM00303
SFSWAP	6433	genome.wustl.edu	37	12	132281751	132281751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004592.2	+1	reviewed	p.R855W	0.972	11	0%	22	22.7%	-	-	unknown(0)	deleterious(0)	-	NULL
MMP17	4326	genome.wustl.edu	37	12	132334525	132334525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016155.4	+1	reviewed	p.M461I	1.000	27	0%	82	29.3%	-	-	benign(0.018)	tolerated(0.21)	neutral(0.044)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
ULK1	8408	genome.wustl.edu	37	12	132393773	132393773	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003565.2	+1	validated	p.A219	0.205	16	0%	37	24.3%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ULK1	8408	genome.wustl.edu	37	12	132400462	132400462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003565.2	+1	validated	p.R546C	0.006	18	0%	64	34.4%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
PUS1	80324	genome.wustl.edu	37	12	132416847	132416847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025215.5	+1	reviewed	p.R144Q	0.950	39	0%	80	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase
EP400	57634	genome.wustl.edu	37	12	132445411	132445411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015409.3	+1	validated	p.V83I	1.000	20	0%	48	39.6%	-	-	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132562038	132562038	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015409.3	+1	validated	p.V3063	0.128	20	0%	33	36.4%	-	-	-	-	-	NULL
EP400NL	347918	genome.wustl.edu	37	12	132588678	132588678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000376625	+1	known	p.T38I	0.999	17	0%	26	38.5%	-	-	unknown(0)	deleterious(0)	-	NULL
GALNT9	50614	genome.wustl.edu	37	12	132688069	132688069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000328957	-1	known	p.A415V	1.000	35	0%	69	42%	-	-	possibly_damaging(0.697)	deleterious(0)	deleterious(0.695)	superfamily_Nucleotide-diphospho-sugar transferases
GALNT9	50614	genome.wustl.edu	37	12	132824506	132824506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000328957	-1	known	p.G345D	1.000	67	0%	113	41.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Nucleotide-diphospho-sugar transferases
POLE	5426	genome.wustl.edu	37	12	133210876	133210876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006231.2	-1	validated	p.A1967V	0.000	307	0%	426	32.9%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
POLE	5426	genome.wustl.edu	37	12	133219113	133219113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006231.2	-1	validated	p.S1644L	1.000	48	0%	94	34%	-	-	benign(0.044)	deleterious(0.04)	neutral(0.351)	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133234521	133234521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006231.2	-1	validated	p.T1104M	0.731	78	0%	56	39.3%	-	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_DNA_pol_B,superfamily_SSF56672
POLE	5426	genome.wustl.edu	37	12	133249857	133249857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006231.2	-1	validated	p.A456P	1.000	129	0%	177	36.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_POLBc,superfamily_RNaseH_fold
POLE	5426	genome.wustl.edu	37	12	133256229	133256229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006231.2	-1	validated	p.H144Q	1.000	81	0%	102	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
PGAM5	192111	genome.wustl.edu	37	12	133294633	133294633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138575.3	+1	validated	p.D216Y	1.000	27	0%	53	15.1%	-	-	benign(0.105)	tolerated(0.25)	neutral(0.045)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
GOLGA3	2802	genome.wustl.edu	37	12	133363086	133363086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005895.3	-1	reviewed	p.A988T	1.000	5	0.000	30	0.433	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
GOLGA3	2802	genome.wustl.edu	37	12	133378544	133378544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005895.3	-1	reviewed	p.R537*	1.000	8	0.000	13	0.462	-	-	-	-	-	superfamily_Spectrin repeat
GOLGA3	2802	genome.wustl.edu	37	12	133398643	133398643	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005895.3	-1	reviewed	p.P24	0.000	11	0%	20	20%	-	-	-	-	-	NULL
CHFR	55743	genome.wustl.edu	37	12	133428286	133428286	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018223.2	-1	validated	p.H441	0.095	21	0%	32	18.8%	-	-	-	-	-	NULL
LOC440122	440122	genome.wustl.edu	37	12	133696743	133696744	+	RNA	INS	-	-	AAC	rs144074942		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040664.1	-1	model	NULL	0.001:0.010	-	-	-	-	-	-	-	-	-	-
LOC729535	729535	genome.wustl.edu	37	13	19271273	19271273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001130539.3	+1	model	p.K55N	0.505	58	0%	75	29.3%	-	-	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	20012252	20012252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199254.2	-1	validated	p.E339K	0.001	129	0%	28	39.3%	-	-	benign(0.096)	tolerated(0.3)	neutral(0.036)	superfamily_(Phosphotyrosine protein) phosphatases II
MPHOSPH8	54737	genome.wustl.edu	37	13	20221288	20221288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017520.3	+1	validated	p.V359M	0.000	80	0%	52	42.3%	-	-	benign(0.066)	tolerated(0.08)	neutral(0.304)	NULL
PSPC1	55269	genome.wustl.edu	37	13	20304417	20304417	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042414.1	-1	validated	p.R374*	1.000	222	0%	109	26.6%	-	-	-	-	-	NULL
PSPC1	55269	genome.wustl.edu	37	13	20356738	20356738	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042414.1	-1	validated	p.E54*	0.903	9	0.000	33	0.273	-	-	-	-	-	superfamily_RNA-binding domain RBD
N6AMT2	221143	genome.wustl.edu	37	13	21303261	21303261	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174928.1	-1	provisional	p.R201	0.975	117	0%	160	35%	-	-	-	-	-	HMMPfam_DPPF
LATS2	26524	genome.wustl.edu	37	13	21549354	21549354	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014572.2	-1	reviewed	p.S974	0.000	179	0%	160	32.5%	-	-	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
LATS2	26524	genome.wustl.edu	37	13	21562636	21562636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014572.2	-1	reviewed	p.A428V	0.408	8	0.000	12	0.500	-	-	benign(0.079)	deleterious(0.01)	neutral(0.411)	NULL
LATS2	26524	genome.wustl.edu	37	13	21562742	21562743	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014572.2	-1	reviewed	p.H393fs	0.263:0.097	-	-	-	-	-	-	-	-	-	NULL
EFHA1	221154	genome.wustl.edu	37	13	22077187	22077187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152726.2	-1	validated	p.F271L	1.000	84	0%	35	45.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF47473
SACS	26278	genome.wustl.edu	37	13	23905590	23905590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014363.4	-1	reviewed	p.K4142T	1.000	169	0%	51	51%	-	-	probably_damaging(0.962)	tolerated(0.06)	deleterious(0.728)	NULL
SACS	26278	genome.wustl.edu	37	13	23907742	23907742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014363.4	-1	reviewed	p.K3425Q	1.000	89	1.1%	43	32.6%	-	-	benign(0.017)	tolerated(0.52)	neutral(0.009)	NULL
SACS	26278	genome.wustl.edu	37	13	23915421	23915421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014363.4	-1	reviewed	p.K865T	1.000	179	0%	85	41.2%	-	-	possibly_damaging(0.9)	tolerated(0.08)	deleterious(0.656)	NULL
ENSG00000205822	0	genome.wustl.edu	37	13	25155861	25155861	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000453498	+1	known	NULL	0.871	80	0%	17	29.4%	-	-	-	-	-	-
ATP12A	479	genome.wustl.edu	37	13	25274914	25274914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001676.5	+1	reviewed	p.E579K	0.097	160	0%	198	38.4%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25275044	25275044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001676.5	+1	reviewed	p.R622Q	1.000	194	0.5%	240	37.9%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25284724	25284724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001676.5	+1	reviewed	p.L964I	0.964	82	0%	99	32.3%	-	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
RNF17	56163	genome.wustl.edu	37	13	25362229	25362229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031277.2	+1	reviewed	p.A239T	1.000	56	0%	13	38.5%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
RNF17	56163	genome.wustl.edu	37	13	25428092	25428092	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031277.2	+1	reviewed	p.N1140	0.677	76	0%	30	33.3%	-	-	-	-	-	NULL
CENPJ	55835	genome.wustl.edu	37	13	25473685	25473685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018451.3	-1	reviewed	p.E955*	1.000	216	0%	185	31.4%	-	-	-	-	-	NULL
CENPJ	55835	genome.wustl.edu	37	13	25483970	25483970	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018451.3	-1	reviewed	p.E275*	0.524	91	0%	48	25%	-	-	-	-	-	NULL
LOC100133284	100133284	genome.wustl.edu	37	13	25591715	25591715	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001715439.1	+1	model	p.E41*	1.000	99	0%	185	37.3%	-	-	-	-	-	HMMPfam_Striatin
ATP8A2	51761	genome.wustl.edu	37	13	26413707	26413707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016529.4	+1	validated	p.N967	1.000	207	0%	114	39.5%	-	-	-	-	-	NULL
SHISA2	387914	genome.wustl.edu	37	13	26620855	26620855	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007538.1	-1	provisional	p.N228	1.000	110	0%	152	13.2%	-	-	-	-	-	NULL
RNF6	6049	genome.wustl.edu	37	13	26788644	26788644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005977.3	-1	reviewed	p.T459A	1.000	110	0%	61	16.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USP12	219333	genome.wustl.edu	37	13	27645220	27645220	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182488.2	-1	provisional	p.D333	0.994	97	0%	89	31.5%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
RASL11A	387496	genome.wustl.edu	37	13	27847549	27847549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206827.1	+1	provisional	p.R216H	0.989	37	0%	54	40.7%	-	-	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	superfamily_SSF52540
LNX2	222484	genome.wustl.edu	37	13	28127508	28127508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153371.3	-1	validated	p.L539M	1.000	61	0%	23	17.4%	-	-	possibly_damaging(0.948)	tolerated(0.13)	deleterious(0.643)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
POLR1D	51082	genome.wustl.edu	37	13	28239833	28239833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152705.1	+1	provisional	p.P38S	1.000	163	0%	174	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GSX1	219409	genome.wustl.edu	37	13	28367893	28367893	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145657.1	+1	provisional	p.K201	1.000	41	0%	73	28.8%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
CDX2	1045	genome.wustl.edu	37	13	28537485	28537485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001265.3	-1	validated	p.R237C	1.000	110	0%	201	14.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
PAN3	255967	genome.wustl.edu	37	13	28854577	28854577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175854.7	+1	validated	p.R540*	1.000	143	0%	40	42.5%	-	-	-	-	-	superfamily_Kinase_like
FLT1	2321	genome.wustl.edu	37	13	28880850	28880850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002019.4	-1	reviewed	p.W1260C	0.999	124	0%	68	33.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FLT1	2321	genome.wustl.edu	37	13	28903802	28903802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002019.4	-1	reviewed	p.G886D	1.000	216	0%	198	30.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SLC46A3	283537	genome.wustl.edu	37	13	29287396	29287396	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135919.1	-1	validated	p.E161*	0.958	68	0%	65	49.2%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MTUS2	23281	genome.wustl.edu	37	13	30072592	30072592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033602.2	+1	validated	p.M1249T	1.000	127	0%	122	36.1%	-	-	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	NULL
ALOX5AP	241	genome.wustl.edu	37	13	31318206	31318206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001629.2	+1	reviewed	p.A27V	1.000	109	0%	62	33.9%	-	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_MAPEG
C13orf33	84935	genome.wustl.edu	37	13	31498459	31498459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032849.3	+1	validated	p.D267Y	0.998	200	0%	127	37%	-	-	possibly_damaging(0.751)	deleterious(0.01)	deleterious(0.681)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31725142	31725142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006644.2	-1	validated	p.L284F	1.000	212	0%	51	37.3%	-	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FRY	10129	genome.wustl.edu	37	13	32723927	32723927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023037.2	+1	validated	p.L479I	1.000	218	0%	165	35.2%	-	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
ZAR1L	646799	genome.wustl.edu	37	13	32885865	32885865	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136571.1	-1	reviewed	p.A66	0.047	10	0%	57	33.3%	-	-	-	-	-	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33091964	33091964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014887.2	-1	validated	p.R576H	0.102	193	0%	65	44.6%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33258050	33258050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015032.3	+1	reviewed	p.A365S	1.000	188	0%	44	31.8%	-	-	benign(0.115)	tolerated(0.65)	neutral(0.012)	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33334730	33334730	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015032.3	+1	reviewed	p.V1130	0.998	137	0%	35	51.4%	-	-	-	-	-	NULL
PDS5B	23047	genome.wustl.edu	37	13	33344566	33344566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015032.3	+1	reviewed	p.S1311Y	0.996	64	0%	20	35%	-	-	benign(0.139)	tolerated(0.2)	neutral(0.061)	NULL
STARD13	90627	genome.wustl.edu	37	13	33685994	33685994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178006.3	-1	validated	p.D843G	1.000	199	0%	103	38.8%	-	-	benign(0.054)	tolerated(0.15)	neutral(0.244)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
STARD13	90627	genome.wustl.edu	37	13	33703666	33703666	+	Missense_Mutation	SNP	C	C	T	rs34425674	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178006.3	-1	validated	p.R383H	0.821	38	0%	64	48.4%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
STARD13	90627	genome.wustl.edu	37	13	33704327	33704327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178006.3	-1	validated	p.L163I	0.960	43	0%	59	37.3%	-	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
NBEA	26960	genome.wustl.edu	37	13	35770201	35770201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015678.4	+1	validated	p.E1710K	0.999	97	2.1%	20	60%	-	-	benign(0.003)	tolerated(0.24)	neutral(0.037)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36241613	36241613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015678.4	+1	validated	p.G2835D	1.000	151	0%	102	42.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40 repeat-like
CCDC169	728591	genome.wustl.edu	37	13	36801470	36801470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144984.1	-1	validated	p.E98D	0.110	116	0%	33	51.5%	-	-	benign(0.011)	-	-	NULL
SPG20	23111	genome.wustl.edu	37	13	36909288	36909288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142294.1	-1	reviewed	p.G227V	1.000	48	0%	23	26.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMAD9	4093	genome.wustl.edu	37	13	37453526	37453526	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127217.2	-1	reviewed	p.L101	1.000	34	0%	34	44.1%	-	-	-	-	-	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
POSTN	10631	genome.wustl.edu	37	13	38154704	38154704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006475.2	-1	validated	p.R508H	1.000	337	0%	85	29.4%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Fasciclin,superfamily_FAS1 domain
POSTN	10631	genome.wustl.edu	37	13	38158866	38158866	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006475.2	-1	validated	p.L365	0.733	208	0%	41	31.7%	-	-	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
FREM2	341640	genome.wustl.edu	37	13	39447013	39447013	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207361.4	+1	reviewed	p.Y2706	0.440	75	0%	59	16.9%	-	-	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39448659	39448659	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207361.4	+1	reviewed	p.G2739	0.718	141	0%	142	47.9%	-	-	-	-	-	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587145	39587145	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025138.3	-1	validated	p.L748	0.997	338	0%	253	41.1%	-	-	-	-	-	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587780	39587780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025138.3	-1	validated	p.L537M	0.028	117	0%	79	32.9%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39605757	39605757	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025138.3	-1	validated	p.L41	0.895	80	0%	62	41.9%	-	-	-	-	-	NULL
NHLRC3	387921	genome.wustl.edu	37	13	39621246	39621246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012754.2	+1	validated	p.A250T	0.007	240	0%	276	33.3%	-	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	superfamily_SSF101898
WBP4	11193	genome.wustl.edu	37	13	41656941	41656941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007187.3	+1	reviewed	p.T341I	1.000	81	0%	47	29.8%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
KBTBD7	84078	genome.wustl.edu	37	13	41766758	41766758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032138.4	-1	provisional	p.R546W	1.000	103	0%	79	39.2%	-	-	probably_damaging(0.996)	tolerated(0.17)	deleterious(0.520)	superfamily_Galactose oxidase central domain
KBTBD7	84078	genome.wustl.edu	37	13	41768247	41768247	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032138.4	-1	provisional	p.L49	1.000	55	0%	83	22.9%	-	-	-	-	-	superfamily_POZ domain
NAA16	79612	genome.wustl.edu	37	13	41946403	41946403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024561.4	+1	validated	p.N671S	1.000	161	0%	39	12.8%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	superfamily_TPR-like
KIAA0564	23078	genome.wustl.edu	37	13	42249390	42249390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015058.1	-1	validated	p.D1457G	1.000	238	0%	50	22%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGKH	160851	genome.wustl.edu	37	13	42739560	42739560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178009.2	+1	reviewed	p.D317N	1.000	214	0%	63	31.7%	-	-	possibly_damaging(0.743)	tolerated(0.35)	neutral(0.293)	NULL
NUFIP1	26747	genome.wustl.edu	37	13	45523922	45523922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012345.2	-1	validated	p.T358I	0.987	321	0%	255	33.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC25A30	253512	genome.wustl.edu	37	13	45976491	45976491	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010875.2	-1	validated	p.A136	0.316	183	0.5%	122	41.8%	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
FAM194B	220081	genome.wustl.edu	37	13	46170526	46170526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182542.2	-1	predicted	p.N205K	0.005	360	0%	222	39.6%	-	-	possibly_damaging(0.875)	tolerated(0.61)	neutral(0.344)	NULL
SPERT	220082	genome.wustl.edu	37	13	46287879	46287879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152719.1	+1	provisional	p.R240H	0.070	9	0.000	26	0.346	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46539475	46539475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015070.3	-1	validated	p.E1472*	1.000	382	0%	105	40%	-	-	-	-	-	NULL
KIAA0226L	80183	genome.wustl.edu	37	13	46923438	46923438	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025113.2	-1	validated	p.T538	1.000	65	0%	82	31.7%	-	-	-	-	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47324762	47324762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000311191	+1	known	p.V690I	0.000	141	0%	39	33.3%	-	-	benign(0.097)	tolerated(0.47)	neutral(0.018)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
HTR2A	3356	genome.wustl.edu	37	13	47409382	47409382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000621.3	-1	reviewed	p.W336G	1.000	102	0%	21	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SUCLA2	8803	genome.wustl.edu	37	13	48562805	48562805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003850.2	-1	reviewed	p.M135I	1.000	144	0%	97	29.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like
MED4	29079	genome.wustl.edu	37	13	48660579	48660579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014166.2	-1	provisional	p.L68V	1.000	155	0%	146	32.9%	-	-	possibly_damaging(0.448)	deleterious(0.01)	deleterious(0.552)	HMMPfam_VDRIP
ITM2B	9445	genome.wustl.edu	37	13	48830477	48830477	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021999.4	+1	reviewed	p.F137	1.000	124	0%	109	39.4%	-	-	-	-	-	HMMPfam_BRICHOS
ITM2B	9445	genome.wustl.edu	37	13	48832991	48832991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021999.4	+1	reviewed	p.R208H	1.000	240	0%	153	32%	-	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_BRICHOS
RB1	5925	genome.wustl.edu	37	13	48916738	48916738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000321.2	+1	reviewed	p.G90S	1.000	70	0%	23	39.1%	-	-	benign(0.054)	tolerated(0.55)	neutral(0.011)	NULL
RB1	5925	genome.wustl.edu	37	13	49039174	49039174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000321.2	+1	reviewed	p.S751Y	1.000	88	0%	105	41%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
FNDC3A	22862	genome.wustl.edu	37	13	49752714	49752714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079673.1	+1	validated	p.F514C	1.000	219	0%	61	41%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PHF11	51131	genome.wustl.edu	37	13	50087279	50087279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040443.1	+1	validated	p.E101*	1.000	312	0%	206	35%	-	-	-	-	-	NULL
PHF11	51131	genome.wustl.edu	37	13	50092274	50092274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040443.1	+1	validated	p.R149*	0.000	54	0%	53	34%	-	-	-	-	-	HMMSmart_PHD
EBPL	84650	genome.wustl.edu	37	13	50235313	50235313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032565.3	-1	validated	p.E138K	1.000	60	0%	45	37.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EBP
EBPL	84650	genome.wustl.edu	37	13	50237312	50237312	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032565.3	-1	validated	p.A87	0.997	127	0%	102	33.3%	-	-	-	-	-	HMMPfam_EBP
TRIM13	10206	genome.wustl.edu	37	13	50586175	50586175	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007278.1	+1	reviewed	p.C36	0.998	99	0%	52	28.8%	-	-	-	-	-	HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850
TRIM13	10206	genome.wustl.edu	37	13	50586283	50586283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007278.1	+1	reviewed	p.L72	1.000	103	0%	41	29.3%	-	-	-	-	-	superfamily_SSF57850
GUCY1B2	2974	genome.wustl.edu	37	13	51599478	51599478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389600	-1	known	p.D101N	1.000	119	0%	42	23.8%	-	-	-	-	-	HMMPfam_HNOBA
SERPINE3	647174	genome.wustl.edu	37	13	51929178	51929178	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101320.1	+1	validated	e5-1	1.000	155	0%	34	35.3%	-	-	-	-	-	-
DHRS12	79758	genome.wustl.edu	37	13	52351217	52351217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031719.1	-1	provisional	p.E114D	1.000	82	0%	140	44.3%	-	-	benign(0.01)	tolerated(0.13)	neutral(0.253)	superfamily_NAD(P)-bd
ATP7B	540	genome.wustl.edu	37	13	52544886	52544886	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000053.2	-1	reviewed	e3-1	0.750	67	0%	47	31.9%	-	-	-	-	-	-
ATP7B	540	genome.wustl.edu	37	13	52548215	52548215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000053.2	-1	reviewed	p.I381V	0.003	92	0%	29	41.4%	-	-	benign(0.036)	tolerated(0.58)	neutral(0.007)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
ALG11	440138	genome.wustl.edu	37	13	52598175	52598175	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004127.1	+1	provisional	p.G103	0.027	172	0%	108	32.4%	-	-	-	-	-	superfamily_SSF53756
OLFM4	10562	genome.wustl.edu	37	13	53624108	53624108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006418.3	+1	reviewed	p.S245R	0.938	159	0%	41	41.5%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58207485	58207485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040429.2	+1	reviewed	p.D269N	1.000	17	0%	24	29.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208363	58208363	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040429.2	+1	reviewed	p.A561	1.000	16	0%	34	26.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208996	58208996	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040429.2	+1	reviewed	p.S772	1.000	100	0%	137	42.3%	-	-	-	-	-	NULL
PCDH9	5101	genome.wustl.edu	37	13	67801437	67801437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203487.2	-1	reviewed	p.V379A	1.000	123	0%	128	36.7%	-	-	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMPfam_Cadherin,superfamily_Cadherin-like
DACH1	1602	genome.wustl.edu	37	13	72063187	72063187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080759.4	-1	reviewed	p.S555F	1.000	81	0%	46	34.8%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
DIS3	22894	genome.wustl.edu	37	13	73335798	73335798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014953.3	-1	validated	p.A833T	1.000	264	0%	90	38.9%	-	-	possibly_damaging(0.768)	tolerated(0.06)	deleterious(0.607)	NULL
PIBF1	10464	genome.wustl.edu	37	13	73372123	73372123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006346.2	+1	validated	p.E211*	1.000	124	0%	40	25%	-	-	-	-	-	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75873508	75873508	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014832.2	-1	validated	p.L1038	0.001	48	0%	20	35%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D4	9882	genome.wustl.edu	37	13	75873626	75873626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014832.2	-1	validated	p.S999F	1.000	39	0%	15	46.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D4	9882	genome.wustl.edu	37	13	75936619	75936619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014832.2	-1	validated	p.G208E	1.000	118	0%	98	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
FBXL3	26224	genome.wustl.edu	37	13	77581438	77581438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012158.2	-1	reviewed	p.V377I	1.000	165	0%	77	29.9%	-	-	possibly_damaging(0.523)	tolerated(0.36)	neutral(0.196)	superfamily_SSF52047
MYCBP2	23077	genome.wustl.edu	37	13	77636781	77636781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015057.4	-1	validated	p.R4204C	1.000	273	0.4%	72	43.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EDNRB	1910	genome.wustl.edu	37	13	78492244	78492244	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000115.2	-1	reviewed	p.I155	0.997	75	0%	74	33.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
POU4F1	5457	genome.wustl.edu	37	13	79175712	79175712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006237.3	-1	validated	p.E366D	1.000	38	0%	111	41.4%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RNF219	79596	genome.wustl.edu	37	13	79190310	79190310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024546.3	-1	validated	p.S529L	1.000	106	0%	48	35.4%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SPRY2	10253	genome.wustl.edu	37	13	80911301	80911301	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005842.2	-1	reviewed	p.D180	1.000	103	0%	111	33.3%	-	-	-	-	-	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86370414	86370414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032229.2	-1	validated	p.T77M	0.996	176	0.6%	31	35.5%	-	-	possibly_damaging(0.861)	tolerated(0.09)	deleterious(0.629)	superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88328913	88328913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015567.1	+1	validated	p.V424M	0.997	61	0%	105	41%	-	-	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	superfamily_L domain-like
GPC6	10082	genome.wustl.edu	37	13	94958323	94958323	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005708.3	+1	reviewed	p.P366	0.935	53	0%	38	57.9%	-	-	-	-	-	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95118820	95118820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001129889.1	-1	validated	p.D230Y	1.000	64	0%	21	19%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Tyrosinase,superfamily_Di-copper_centre
ABCC4	10257	genome.wustl.edu	37	13	95860133	95860133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005845.3	-1	reviewed	p.E278*	1.000	173	0%	92	38%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
CLDN10	9071	genome.wustl.edu	37	13	96205093	96205093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006984.4	+1	reviewed	p.Y29C	1.000	20	5%	39	46.2%	-	-	possibly_damaging(0.44)	deleterious(0.05)	deleterious(0.489)	HMMPfam_PMP22_Claudin
DZIP1	22873	genome.wustl.edu	37	13	96258307	96258307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198968.2	-1	validated	p.A476D	0.316	108	0%	73	32.9%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
DNAJC3	5611	genome.wustl.edu	37	13	96416094	96416094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006260.3	+1	reviewed	p.K321R	1.000	237	0%	69	40.6%	-	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
UGGT2	55757	genome.wustl.edu	37	13	96546859	96546859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020121.3	-1	validated	p.R938C	0.024	155	0%	22	27.3%	-	-	possibly_damaging(0.67)	deleterious(0.04)	deleterious(0.587)	HMMPfam_UDP-g_GGTase
MBNL2	10150	genome.wustl.edu	37	13	97928517	97928517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144778.2	+1	reviewed	p.D10Y	1.000	130	0%	34	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MBNL2	10150	genome.wustl.edu	37	13	98043601	98043601	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207304.1	+1	reviewed	p.N328	0.033	135	0.7%	49	38.8%	-	-	-	-	-	NULL
RNF113B	140432	genome.wustl.edu	37	13	98828886	98828886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178861.4	-1	validated	p.T202I	1.000	76	0%	128	35.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF90229
RNF113B	140432	genome.wustl.edu	37	13	98829332	98829332	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178861.4	-1	validated	p.G53	0.005	9	0.000	23	0.261	-	-	-	-	-	NULL
FARP1	10160	genome.wustl.edu	37	13	99099066	99099066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005766.2	+1	reviewed	p.F1017	0.993	78	0%	104	35.6%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLC15A1	6564	genome.wustl.edu	37	13	99338474	99338474	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005073.3	-1	reviewed	p.I635	0.076	95	0%	60	40%	-	-	-	-	-	superfamily_MFS general substrate transporter
DOCK9	23348	genome.wustl.edu	37	13	99452703	99452703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000357329	-1	known	p.R1934C	1.000	72	0%	28	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
DOCK9	23348	genome.wustl.edu	37	13	99582438	99582438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130049.1	-1	validated	p.S107I	1.000	98	0%	51	29.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TMTC4	84899	genome.wustl.edu	37	13	101308682	101308682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032813.2	-1	validated	p.L198P	1.000	175	0%	112	33.9%	-	-	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
NALCN	259232	genome.wustl.edu	37	13	101707748	101707748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052867.2	-1	validated	p.M1706V	1.000	210	0%	98	37.8%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
FGF14	2259	genome.wustl.edu	37	13	102375227	102375227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175929.2	-1	reviewed	p.A238V	1.000	197	0%	34	35.3%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
TPP2	7174	genome.wustl.edu	37	13	103268771	103268771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003291.2	+1	reviewed	p.D139G	1.000	65	0%	22	18.2%	-	-	possibly_damaging(0.512)	deleterious(0.01)	deleterious(0.578)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
TPP2	7174	genome.wustl.edu	37	13	103297358	103297358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003291.2	+1	reviewed	p.R798C	0.996	97	0%	27	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103383818	103383818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002344085.1	-1	model	p.P6258L	0.001	166	0%	48	31.2%	-	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103391485	103391485	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002344085.1	-1	model	p.L3783	0.009	188	0%	45	31.1%	-	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392029	103392029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002344085.1	-1	model	p.R3602I	0.000	256	0%	47	31.9%	-	-	-	-	-	NULL
KDELC1	79070	genome.wustl.edu	37	13	103443298	103443298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024089.2	-1	reviewed	p.L346M	1.000	108	0%	61	42.6%	-	-	possibly_damaging(0.903)	tolerated(0.1)	deleterious(0.644)	HMMSmart_CAP10,HMMPfam_DUF821
ABHD13	84945	genome.wustl.edu	37	13	108882124	108882124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032859.2	+1	validated	p.K186N	0.996	105	0%	38	31.6%	-	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
COL4A1	1282	genome.wustl.edu	37	13	110819570	110819570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001845.4	-1	reviewed	p.G1295D	0.914	123	0%	84	34.5%	-	-	probably_damaging(0.999)	tolerated(0.8)	deleterious(0.491)	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111117807	111117807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001846.2	+1	reviewed	p.T611M	0.000	19	0%	36	50%	-	-	unknown(0)	tolerated(0.1)	-	HMMPfam_Collagen
CARKD	55739	genome.wustl.edu	37	13	111277574	111277574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018210.2	+1	validated	p.A112V	1.000	36	0%	79	34.2%	-	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Carb_kinase,superfamily_SSF53613
CARKD	55739	genome.wustl.edu	37	13	111279803	111279803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018210.2	+1	validated	p.V135A	0.709	180	0%	266	14.3%	-	-	possibly_damaging(0.935)	tolerated(0.16)	neutral(0.440)	HMMPfam_Carb_kinase,superfamily_SSF53613
ANKRD10	55608	genome.wustl.edu	37	13	111536133	111536133	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017664.2	-1	validated	p.S233	0.013	109	0%	51	35.3%	-	-	-	-	-	NULL
ARHGEF7	8874	genome.wustl.edu	37	13	111938512	111938512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113511.1	+1	reviewed	p.K678E	1.000	87	0%	114	38.6%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113200144	113200144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006322.4	-1	provisional	p.A402T	0.998	76	0%	89	34.8%	-	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Spc97_Spc98
ATP11A	23250	genome.wustl.edu	37	13	113487179	113487179	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418678	+1	known	p.A442V	0.350	114	0%	203	10.3%	-	-	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
MCF2L	23263	genome.wustl.edu	37	13	113730304	113730304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001112732.1	+1	validated	p.I502V	0.991	74	0%	125	33.6%	-	-	benign(0.037)	tolerated(0.63)	neutral(0.005)	superfamily_Spectrin repeat
F10	2159	genome.wustl.edu	37	13	113783816	113783816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000504.3	+1	reviewed	p.A41T	1.000	51	0%	82	31.7%	-	-	possibly_damaging(0.723)	deleterious(0.01)	deleterious(0.668)	HMMSmart_SM00069,superfamily_GLA-domain
F10	2159	genome.wustl.edu	37	13	113798391	113798391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418726	+1	known	p.T120M	0.000	49	0%	117	29.1%	-	-	-	-	-	NULL
F10	2159	genome.wustl.edu	37	13	113801752	113801752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000504.3	+1	reviewed	p.F269L	0.001	80	0%	142	35.9%	-	-	benign(0.165)	tolerated(0.64)	neutral(0.018)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GRTP1	79774	genome.wustl.edu	37	13	113979895	113979895	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375430	-1	known	p.P334	0.010	34	0%	85	35.3%	-	-	-	-	-	NULL
ADPRHL1	113622	genome.wustl.edu	37	13	114098754	114098754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138430.3	-1	validated	p.P122L	0.994	125	0%	214	27.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
TFDP1	7027	genome.wustl.edu	37	13	114285986	114285986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007111.4	+1	reviewed	p.G79*	1.000	211	0%	356	34%	-	-	-	-	-	NULL
FAM70B	348013	genome.wustl.edu	37	13	114469089	114469089	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182614.2	+1	provisional	p.E16	0.960	42	0%	80	37.5%	-	-	-	-	-	NULL
FAM70B	348013	genome.wustl.edu	37	13	114504697	114504697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182614.2	+1	provisional	p.R194H	1.000	14	0%	43	44.2%	-	-	probably_damaging(0.992)	tolerated(0.53)	neutral(0.455)	NULL
GAS6	2621	genome.wustl.edu	37	13	114531619	114531619	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000820.2	-1	reviewed	p.I403	0.772	79	0%	148	35.8%	-	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
OR11H2	79334	genome.wustl.edu	37	14	20181152	20181152	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000334072	-1	known	p.Q308	0.976	357	0%	121	31.4%	-	-	-	-	-	superfamily_SSF81321
OR4M1	441670	genome.wustl.edu	37	14	20248725	20248725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005500.1	+1	provisional	p.L82F	0.993	612	0%	167	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K5	79317	genome.wustl.edu	37	14	20389170	20389170	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005483.1	+1	provisional	p.I135	0.929	209	0%	55	27.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20389353	20389353	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005483.1	+1	provisional	p.E196	0.013	358	0%	98	21.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20404285	20404285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004063.2	+1	validated	p.L154I	0.484	299	0%	101	24.8%	-	-	benign(0.076)	tolerated(0.9)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20404335	20404335	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004063.2	+1	validated	p.G170	0.993	303	0%	88	18.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K15	81127	genome.wustl.edu	37	14	20444332	20444332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005486.1	+1	provisional	p.V219I	0.000	247	0%	54	22.2%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_7tm_1,superfamily_SSF81321
PARP2	10038	genome.wustl.edu	37	14	20824814	20824814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005484.3	+1	reviewed	p.I445S	1.000	211	0%	133	13.5%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_PARP,superfamily_ADP-ribosylation
TEP1	7011	genome.wustl.edu	37	14	20863770	20863770	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007110.4	-1	reviewed	p.S589	0.549	160	0%	115	37.4%	-	-	-	-	-	HMMPfam_TROVE
RNASE11	122651	genome.wustl.edu	37	14	21052395	21052395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145250.3	-1	validated	p.S80I	0.019	208	0%	103	27.2%	-	-	benign(0.004)	tolerated(0.05)	neutral(0.345)	superfamily_RNase A-like
ARHGEF40	55701	genome.wustl.edu	37	14	21549781	21549781	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018071.3	+1	validated	p.T918	1.000	7	0.000	15	0.467	-	-	-	-	-	NULL
C14orf176	643382	genome.wustl.edu	37	14	21570110	21570110	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343257.1	+1	model	p.A4	0.057	74	0%	116	33.6%	-	-	-	-	-	NULL
OR5AU1	390445	genome.wustl.edu	37	14	21623368	21623368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004731.1	-1	provisional	p.L273I	0.080	210	0%	113	42.5%	-	-	benign(0.023)	tolerated(0.5)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
HNRNPC	3183	genome.wustl.edu	37	14	21702317	21702317	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077442.1	-1	reviewed	p.R12	0.878	237	0%	105	38.1%	-	-	-	-	-	superfamily_RNA-binding domain RBD
CHD8	57680	genome.wustl.edu	37	14	21868143	21868143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020920.3	-1	reviewed	p.A1326V	1.000	124	0%	60	25%	-	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21868728	21868728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020920.3	-1	reviewed	p.R1193*	1.000	76	0%	34	20.6%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21883117	21883117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020920.3	-1	reviewed	p.F389L	1.000	228	0%	94	27.7%	-	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
TOX4	9878	genome.wustl.edu	37	14	21961059	21961059	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014828.2	+1	validated	p.A428	0.460	43	0%	42	45.2%	-	-	-	-	-	NULL
OR10G3	26533	genome.wustl.edu	37	14	22037947	22037947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005465.1	-1	validated	p.P310L	0.001	85	0%	65	32.3%	-	-	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
TRAC	28755	genome.wustl.edu	37	14	22538997	22538997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000446346	+1	known	p.G11C	0.003	229	0%	80	33.8%	-	-	benign(0.068)	tolerated(0.25)	neutral(0.041)	NULL
TRAC	28755	genome.wustl.edu	37	14	22539463	22539463	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000446346	+1	known	p.C103	0.996	23	0%	14	35.7%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ABHD4	63874	genome.wustl.edu	37	14	23070635	23070635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022060.2	+1	validated	p.K29N	1.000	64	0%	102	39.2%	-	-	benign(0.011)	deleterious(0.05)	neutral(0.346)	NULL
LOC100288791	100288791	genome.wustl.edu	37	14	23315089	23315089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343265.1	-1	model	p.V36I	0.333	73	0%	125	38.4%	-	-	-	-	-	NULL
PRMT5	10419	genome.wustl.edu	37	14	23395385	23395385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006109.3	-1	validated	p.V245A	1.000	152	0.7%	161	21.1%	-	-	possibly_damaging(0.541)	tolerated(0.21)	neutral(0.227)	HMMPfam_PRMT5
CDH24	64403	genome.wustl.edu	37	14	23524351	23524351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022478.3	-1	validated	p.I138T	1.000	70	0%	111	34.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
SLC7A8	23428	genome.wustl.edu	37	14	23608643	23608643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012244.2	-1	validated	p.A301V	1.000	109	0%	98	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
PABPN1	8106	genome.wustl.edu	37	14	23791449	23791449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004643.2	+1	reviewed	p.K137N	1.000	116	0%	183	39.9%	-	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	superfamily_RNA-binding domain RBD
PABPN1	8106	genome.wustl.edu	37	14	23793489	23793489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004643.2	+1	reviewed	p.R291H	1.000	50	0%	86	47.7%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
CMTM5	116173	genome.wustl.edu	37	14	23847682	23847682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138460.2	+1	reviewed	p.R84H	1.000	189	0%	264	37.1%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_MARVEL
MYH6	4624	genome.wustl.edu	37	14	23858686	23858686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002471.3	-1	validated	p.A1298	0.068	86	0%	181	12.2%	-	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH6	4624	genome.wustl.edu	37	14	23870131	23870131	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002471.3	-1	validated	p.G399	0.963	93	0%	142	28.9%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23885034	23885034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000257.2	-1	reviewed	p.Q1654R	1.000	67	0%	105	32.4%	-	-	possibly_damaging(0.663)	deleterious(0.03)	deleterious(0.599)	HMMPfam_Myosin_tail_1
C14orf167	55449	genome.wustl.edu	37	14	24422937	24422937	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_023921.1	-1	validated	NULL	0.003	19	0%	32	34.4%	-	-	-	-	-	-
LRRC16B	90668	genome.wustl.edu	37	14	24538007	24538007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138360.3	+1	validated	p.A1272T	0.104	33	0%	71	28.2%	-	-	benign(0.187)	tolerated(0.29)	neutral(0.046)	NULL
REC8	9985	genome.wustl.edu	37	14	24647343	24647343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001048205.1	+1	reviewed	p.R303Q	0.526	26	0%	55	16.4%	-	-	benign(0.001)	tolerated(1)	-	NULL
LTB4R2	56413	genome.wustl.edu	37	14	24780622	24780622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019839.4	+1	validated	p.A282V	0.083	15	0%	30	26.7%	-	-	possibly_damaging(0.842)	tolerated(0.29)	neutral(0.351)	HMMPfam_7tm_1,superfamily_SSF81321
LTB4R2	56413	genome.wustl.edu	37	14	24780753	24780753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019839.4	+1	validated	p.L326M	0.912	30	0%	63	31.7%	-	-	probably_damaging(0.962)	tolerated(0.11)	deleterious(0.677)	NULL
ADCY4	196883	genome.wustl.edu	37	14	24798349	24798349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139247.2	-1	reviewed	p.Y481C	1.000	167	0%	209	43.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1053
NYNRIN	57523	genome.wustl.edu	37	14	24884009	24884009	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025081.2	+1	validated	p.D1018	0.000	102	0%	176	38.6%	-	-	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24885522	24885522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025081.2	+1	validated	p.L1523F	0.994	31	0%	78	11.5%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
NOVA1	4857	genome.wustl.edu	37	14	27064755	27064755	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002515.2	-1	reviewed	p.D47	1.000	146	0%	175	38.9%	-	-	-	-	-	NULL
PRKD1	5587	genome.wustl.edu	37	14	30068326	30068326	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002742.2	-1	validated	p.L691	0.932	128	0%	31	48.4%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
HEATR5A	25938	genome.wustl.edu	37	14	31762572	31762572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015473.2	-1	validated	p.S1734F	1.000	104	0%	59	32.2%	-	-	benign(0.096)	deleterious(0.02)	neutral(0.390)	NULL
HEATR5A	25938	genome.wustl.edu	37	14	31777219	31777219	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015473.2	-1	validated	p.S1273	1.000	86	0%	47	29.8%	-	-	-	-	-	superfamily_ARM repeat
NUBPL	80224	genome.wustl.edu	37	14	32031422	32031422	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025152.2	+1	validated	e2+1	1.000	79	0%	149	33.6%	-	-	-	-	-	-
AKAP6	9472	genome.wustl.edu	37	14	33291034	33291034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004274.4	+1	reviewed	p.L1339I	0.989	79	0%	26	26.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33292239	33292239	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004274.4	+1	reviewed	p.V1740	0.997	111	0%	33	36.4%	-	-	-	-	-	NULL
SNX6	58533	genome.wustl.edu	37	14	35050779	35050779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152233.2	-1	reviewed	p.F286	1.000	90	0%	69	43.5%	-	-	-	-	-	HMMPfam_Vps5
RALGAPA1	253959	genome.wustl.edu	37	14	36240206	36240206	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194301.2	-1	provisional	e4-1	1.000	21	0.000	8	0.750	-	-	-	-	-	-
RALGAPA1	253959	genome.wustl.edu	37	14	36277948	36277948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194301.2	-1	provisional	p.R32C	1.000	90	0%	140	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37737883	37737883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138731.5	+1	validated	p.N91T	0.003	128	0%	26	53.8%	-	-	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	NULL
FOXA1	3169	genome.wustl.edu	37	14	38061304	38061304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004496.2	-1	reviewed	p.V229I	1.000	67	0%	127	46.5%	-	-	possibly_damaging(0.492)	tolerated(0.16)	neutral(0.224)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
PNN	5411	genome.wustl.edu	37	14	39649827	39649827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002687.3	+1	validated	p.A305V	1.000	502	0%	361	36.3%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
FSCB	84075	genome.wustl.edu	37	14	44975361	44975361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032135.3	-1	validated	p.A277V	0.018	117	0%	55	32.7%	-	-	possibly_damaging(0.598)	tolerated(0.27)	neutral(0.240)	NULL
C14orf28	122525	genome.wustl.edu	37	14	45369899	45369899	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017923.1	+1	validated	p.E87	1.000	66	0%	68	33.8%	-	-	-	-	-	NULL
FAM179B	23116	genome.wustl.edu	37	14	45432435	45432435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015091.2	+1	validated	p.E271*	1.000	64	0%	50	38%	-	-	-	-	-	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45433279	45433279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015091.2	+1	validated	p.A552V	1.000	118	0%	93	34.4%	-	-	possibly_damaging(0.947)	deleterious(0.03)	deleterious(0.755)	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45433454	45433454	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015091.2	+1	validated	p.T610	0.980	121	0%	79	40.5%	-	-	-	-	-	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45523725	45523725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015091.2	+1	validated	p.S1458F	1.000	80	0%	39	33.3%	-	-	probably_damaging(0.981)	deleterious(0.05)	deleterious(0.771)	superfamily_ARM repeat
MIS18BP1	55320	genome.wustl.edu	37	14	45693163	45693163	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018353.4	-1	validated	p.Q876P	0.002	132	0%	82	15.9%	-	-	possibly_damaging(0.916)	tolerated(0.13)	deleterious(0.619)	HMMSmart_SM00717,superfamily_Homeodomain-like
MIS18BP1	55320	genome.wustl.edu	37	14	45693553	45693553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018353.4	-1	validated	p.R746I	0.000	144	0%	93	41.9%	-	-	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	NULL
MIS18BP1	55320	genome.wustl.edu	37	14	45716461	45716461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018353.4	-1	validated	p.R10I	0.771	52	0%	57	28.1%	-	-	benign(0.303)	deleterious(0.02)	deleterious(0.477)	NULL
ENSG00000248934	0	genome.wustl.edu	37	14	50089400	50089400	+	RNA	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000504161	-1	novel	NULL	0.993	12	0%	20	35%	-	-	-	-	-	-
POLE2	5427	genome.wustl.edu	37	14	50122404	50122404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002692.2	-1	provisional	p.R305C	1.000	126	0%	88	42%	-	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_DNA_pol_E_B
NEMF	9147	genome.wustl.edu	37	14	50272849	50272849	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004713.3	-1	validated	p.E583*	1.000	64	0%	24	25%	-	-	-	-	-	HMMPfam_DUF814
SOS2	6655	genome.wustl.edu	37	14	50625284	50625284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006939.2	-1	validated	p.R645W	1.000	174	0%	41	43.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF
NIN	51199	genome.wustl.edu	37	14	51223976	51223976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020921.3	-1	reviewed	p.E1258*	0.991	214	0%	162	32.7%	-	-	-	-	-	NULL
NIN	51199	genome.wustl.edu	37	14	51238147	51238147	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020921.3	-1	reviewed	p.E341*	1.000	162	0%	103	33%	-	-	-	-	-	superfamily_EF-hand
FRMD6	122786	genome.wustl.edu	37	14	52167873	52167873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000344768	+1	known	p.T97I	1.000	87	0%	16	37.5%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
C14orf166	51637	genome.wustl.edu	37	14	52468540	52468540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016039.2	+1	validated	p.R163C	1.000	171	0%	46	32.6%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_RLL
TXNDC16	57544	genome.wustl.edu	37	14	52899057	52899057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020784.2	-1	validated	p.R815C	0.000	140	0%	86	44.2%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
STYX	6815	genome.wustl.edu	37	14	53235564	53235564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130701.1	+1	validated	p.E171*	1.000	74	0%	19	36.8%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
FERMT2	10979	genome.wustl.edu	37	14	53385887	53385887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134999.1	-1	validated	p.F115L	1.000	97	0%	29	34.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_B41
BMP4	652	genome.wustl.edu	37	14	54417048	54417048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001202.3	-1	reviewed	p.R310H	1.000	54	0%	104	49%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
CGRRF1	10668	genome.wustl.edu	37	14	55005090	55005090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006568.2	+1	validated	p.K330E	0.275	55	0%	22	36.4%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
GCH1	2643	genome.wustl.edu	37	14	55332114	55332114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000161.2	-1	reviewed	p.E128D	1.000	153	0%	64	12.5%	-	-	possibly_damaging(0.521)	deleterious(0.04)	deleterious(0.524)	PatternScan_GTP_CYCLOHYDROL_1_1,HMMPfam_GTP_cyclohydroI,superfamily_Tetrahydrobiopterin biosynthesis enzymes-like
WDHD1	11169	genome.wustl.edu	37	14	55433279	55433279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007086.2	-1	reviewed	p.L742V	1.000	271	0%	129	39.5%	-	-	possibly_damaging(0.541)	deleterious(0.02)	deleterious(0.567)	superfamily_WD40_like
DLGAP5	9787	genome.wustl.edu	37	14	55655720	55655720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014750.4	-1	validated	p.L60I	0.889	263	0.4%	210	35.7%	-	-	benign(0.021)	tolerated(0.22)	neutral(0.043)	NULL
KTN1	3895	genome.wustl.edu	37	14	56117110	56117110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079521.1	+1	validated	p.V824F	1.000	116	0%	47	38.3%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	superfamily_Spectrin repeat
PELI2	57161	genome.wustl.edu	37	14	56755227	56755227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021255.2	+1	validated	p.E128K	0.999	78	0%	27	25.9%	-	-	benign(0.245)	tolerated(0.68)	neutral(0.027)	HMMPfam_Pellino
C14orf101	54916	genome.wustl.edu	37	14	57088258	57088258	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017799.3	+1	validated	p.D412	1.000	156	0%	60	40%	-	-	-	-	-	NULL
OTX2	5015	genome.wustl.edu	37	14	57272090	57272090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021728.2	-1	reviewed	p.V29M	1.000	86	0%	190	33.2%	-	-	possibly_damaging(0.445)	tolerated(0.31)	neutral(0.172)	superfamily_Homeodomain_like
C14orf37	145407	genome.wustl.edu	37	14	58604928	58604928	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001872.2	-1	predicted	p.A383	0.000	93	0%	66	25.8%	-	-	-	-	-	NULL
PSMA3	5684	genome.wustl.edu	37	14	58727739	58727739	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002788.2	+1	reviewed	e6+1	1.000	151	0%	84	38.1%	-	-	-	-	-	-
ARID4A	5926	genome.wustl.edu	37	14	58825935	58825935	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002892.3	+1	reviewed	e17+1	1.000	139	0%	115	33.9%	-	-	-	-	-	-
ARID4A	5926	genome.wustl.edu	37	14	58831376	58831376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002892.3	+1	reviewed	p.R857W	1.000	40	0%	37	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58831890	58831890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002892.3	+1	reviewed	p.E1028A	1.000	132	0%	64	35.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DAAM1	23002	genome.wustl.edu	37	14	59798009	59798009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014992.1	+1	reviewed	p.L548H	0.002	68	0%	40	42.5%	-	-	unknown(0)	deleterious(0)	-	NULL
C14orf38	729665	genome.wustl.edu	37	14	60030468	60030468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000281581	-1	known	p.T277I	0.078	175	0%	60	45%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
RTN1	6252	genome.wustl.edu	37	14	60193723	60193723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021136.2	-1	reviewed	p.S560F	0.000	35	0%	66	40.9%	-	-	benign(0.313)	deleterious(0.01)	deleterious(0.503)	NULL
RTN1	6252	genome.wustl.edu	37	14	60194112	60194112	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021136.2	-1	reviewed	p.G430	0.967	6	0.000	16	0.250	-	-	-	-	-	NULL
SIX1	6495	genome.wustl.edu	37	14	61115817	61115817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005982.3	-1	reviewed	p.G31S	1.000	11	0%	42	33.3%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
SLC38A6	145389	genome.wustl.edu	37	14	61518786	61518786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153811.2	+1	validated	p.F408C	1.000	253	0%	120	35%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aa_trans
TMEM30B	161291	genome.wustl.edu	37	14	61746896	61746896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017970.2	-1	validated	p.V324I	0.989	35	0%	82	15.9%	-	-	benign(0.155)	tolerated(0.19)	neutral(0.063)	HMMPfam_CDC50
PRKCH	5583	genome.wustl.edu	37	14	61919961	61919961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006255.3	+1	reviewed	p.H284Y	1.000	131	0%	55	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
PRKCH	5583	genome.wustl.edu	37	14	61997193	61997193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006255.3	+1	reviewed	p.M547I	1.000	135	0%	73	45.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SNAPC1	6617	genome.wustl.edu	37	14	62259535	62259535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003082.3	+1	validated	p.Q329H	0.017	97	0%	42	47.6%	-	-	possibly_damaging(0.447)	tolerated(0.18)	neutral(0.202)	NULL
SYT16	83851	genome.wustl.edu	37	14	62541923	62541923	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031914.2	+1	validated	p.A269	0.000	90	0%	34	11.8%	-	-	-	-	-	NULL
KCNH5	27133	genome.wustl.edu	37	14	63416979	63416979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139318.3	-1	reviewed	p.S414I	1.000	124	0%	22	54.5%	-	-	benign(0.041)	deleterious(0)	neutral(0.447)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PPP2R5E	5529	genome.wustl.edu	37	14	63920546	63920546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006246.2	-1	reviewed	p.V72A	1.000	138	0%	71	11.3%	-	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	HMMPfam_B56,superfamily_ARM repeat
SYNE2	23224	genome.wustl.edu	37	14	64483235	64483235	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182914.2	+1	reviewed	p.V1591	0.998	44	0%	16	31.2%	-	-	-	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64556370	64556370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182914.2	+1	reviewed	p.E3917*	1.000	57	0%	31	38.7%	-	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64634074	64634074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182914.2	+1	reviewed	p.R5577W	0.966	82	0%	38	44.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ESR2	2100	genome.wustl.edu	37	14	64699953	64699953	+	Missense_Mutation	SNP	C	C	T	rs141940742	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001437.2	-1	reviewed	p.V499M	0.995	124	0%	99	33.3%	-	-	benign(0.008)	deleterious(0.04)	neutral(0.349)	superfamily_Nuclear receptor ligand-binding domain
ESR2	2100	genome.wustl.edu	37	14	64701829	64701829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001437.2	-1	reviewed	p.S422I	1.000	43	0%	31	32.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
MTHFD1	4522	genome.wustl.edu	37	14	64892896	64892896	+	Silent	SNP	C	C	T	rs187474222	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005956.3	+1	reviewed	p.Y371	0.370	99	0%	63	28.6%	-	-	-	-	-	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB1	22890	genome.wustl.edu	37	14	64990077	64990077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123329.1	+1	validated	p.R619C	1.000	118	0%	45	15.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PLEKHG3	26030	genome.wustl.edu	37	14	65208466	65208466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015549.1	+1	validated	p.Y688C	1.000	13	0%	37	35.1%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PLEKHG3	26030	genome.wustl.edu	37	14	65208661	65208661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015549.1	+1	validated	p.R753H	0.960	24	0%	47	42.6%	-	-	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
RAB15	376267	genome.wustl.edu	37	14	65418328	65418328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198686.2	-1	validated	p.R80Q	1.000	74	0%	76	38.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
GPHN	10243	genome.wustl.edu	37	14	67631934	67631934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020806.4	+1	reviewed	p.A656T	1.000	213	0.5%	88	11.4%	-	-	benign(0.222)	deleterious(0.01)	neutral(0.428)	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth
GPHN	10243	genome.wustl.edu	37	14	67646301	67646301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020806.4	+1	reviewed	p.C696R	1.000	164	0%	54	24.1%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_MoeA_C,superfamily_MoeA_C
MPP5	64398	genome.wustl.edu	37	14	67769253	67769253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022474.2	+1	validated	p.R310W	1.000	184	0%	51	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MPP5	64398	genome.wustl.edu	37	14	67787063	67787063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022474.2	+1	validated	p.R496C	1.000	109	0%	51	37.3%	-	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF2S1	1965	genome.wustl.edu	37	14	67847476	67847476	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004094.4	+1	validated	p.R192*	1.000	55	0%	30	46.7%	-	-	-	-	-	HMMPfam_EIF_2_alpha,superfamily_eIF-2-alpha C-terminal domain
VTI1B	10490	genome.wustl.edu	37	14	68126614	68126614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006370.2	-1	validated	p.R67H	0.981	86	1.2%	68	47.1%	-	-	possibly_damaging(0.87)	tolerated(0.1)	deleterious(0.625)	HMMPfam_V-SNARE
ZFYVE26	23503	genome.wustl.edu	37	14	68219083	68219083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015346.3	-1	reviewed	p.A2450V	0.419	58	0%	59	32.2%	-	-	benign(0.002)	tolerated(0.67)	neutral(0.003)	NULL
EXD2	55218	genome.wustl.edu	37	14	69701535	69701535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018199.2	+1	provisional	p.K154T	0.405	134	0%	68	44.1%	-	-	benign(0.291)	tolerated(0.35)	neutral(0.110)	NULL
KIAA0247	9766	genome.wustl.edu	37	14	70175489	70175489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014734.3	+1	validated	p.S185F	0.070	34	0%	27	37%	-	-	possibly_damaging(0.821)	tolerated(0.73)	neutral(0.312)	NULL
SRSF5	6430	genome.wustl.edu	37	14	70235375	70235375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039465.1	+1	validated	p.E61*	1.000	414	0%	444	35.6%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SRSF5	6430	genome.wustl.edu	37	14	70237222	70237222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000344070	+1	known	p.V131I	0.998	117	0%	128	41.4%	-	-	-	-	-	NULL
ENSG00000235812	0	genome.wustl.edu	37	14	70712570	70712570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433248	-1	known	p.D433G	0.726	235	0%	94	40.4%	-	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM21	8747	genome.wustl.edu	37	14	70925166	70925166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003813.2	+1	reviewed	p.R317H	0.478	146	0%	41	29.3%	-	-	benign(0.036)	tolerated(0.15)	neutral(0.243)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TTC9	23508	genome.wustl.edu	37	14	71134379	71134379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015351.1	+1	reviewed	p.R169W	1.000	155	0%	75	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
MAP3K9	4293	genome.wustl.edu	37	14	71206803	71206803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033141.2	-1	validated	p.P549L	1.000	243	0%	188	29.3%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72054698	72054698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015556.1	+1	provisional	p.R37W	1.000	58	0%	20	30%	-	-	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72152142	72152142	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015556.1	+1	provisional	p.Y1056	0.744	108	0%	65	35.4%	-	-	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72171471	72171471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015556.1	+1	provisional	p.S1227Y	1.000	247	0%	126	43.7%	-	-	unknown(0)	tolerated(1)	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72190374	72190374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015556.1	+1	provisional	p.S1428P	1.000	134	0%	85	36.5%	-	-	probably_damaging(0.964)	tolerated(0.19)	neutral(0.456)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72205763	72205763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015556.1	+1	provisional	p.A1767V	1.000	58	0%	37	29.7%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
DPF3	8110	genome.wustl.edu	37	14	73190389	73190389	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012074.3	-1	provisional	p.E159	0.952	526	0%	476	36.8%	-	-	-	-	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73572703	73572703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021239.2	+1	validated	p.R431W	1.000	237	0%	173	39.3%	-	-	unknown(0)	deleterious(0.02)	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73572932	73572932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021239.2	+1	validated	p.R469Q	1.000	56	0%	33	36.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
RBM25	58517	genome.wustl.edu	37	14	73578335	73578335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021239.2	+1	validated	p.V706A	1.000	135	0%	101	11.9%	-	-	unknown(0)	tolerated(0.77)	-	NULL
PAPLN	89932	genome.wustl.edu	37	14	73712388	73712388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173462.3	+1	validated	p.R72H	1.000	14	0%	56	21.4%	-	-	probably_damaging(1)	tolerated(0.53)	deleterious(0.507)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
PAPLN	89932	genome.wustl.edu	37	14	73721259	73721259	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173462.3	+1	validated	p.S420	0.003	135	0%	212	15.6%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
PAPLN	89932	genome.wustl.edu	37	14	73727987	73727987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173462.3	+1	validated	p.G717C	0.925	29	0%	53	13.2%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
NUMB	8650	genome.wustl.edu	37	14	73743510	73743510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005743.1	-1	reviewed	p.P578S	1.000	69	0%	61	32.8%	-	-	benign(0.396)	deleterious(0.03)	deleterious(0.491)	NULL
HEATR4	399671	genome.wustl.edu	37	14	73989320	73989320	+	Silent	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203309.1	-1	provisional	p.P132	0.000	68	0%	57	36.8%	-	-	-	-	-	NULL
ALDH6A1	4329	genome.wustl.edu	37	14	74533476	74533476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005589.2	-1	reviewed	p.R386*	0.978	128	0%	69	43.5%	-	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
VSX2	338917	genome.wustl.edu	37	14	74727339	74727339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182894.2	+1	reviewed	p.R268M	1.000	11	0%	24	29.2%	-	-	possibly_damaging(0.595)	deleterious(0.05)	deleterious(0.551)	NULL
LTBP2	4053	genome.wustl.edu	37	14	74970709	74970709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000428.2	-1	reviewed	p.R1501Q	0.996	66	0%	76	44.7%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
LTBP2	4053	genome.wustl.edu	37	14	74976908	74976908	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000428.2	-1	reviewed	p.E1013*	1.000	54	1.9%	117	36.8%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
LTBP2	4053	genome.wustl.edu	37	14	74978022	74978022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000428.2	-1	reviewed	p.C985Y	1.000	48	0%	64	51.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
YLPM1	56252	genome.wustl.edu	37	14	75248934	75248934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019589.2	+1	validated	p.P730T	0.000	60	0%	37	35.1%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75276084	75276084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019589.2	+1	validated	p.P1508H	1.000	183	0%	83	13.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MLH3	27030	genome.wustl.edu	37	14	75515838	75515838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040108.1	-1	reviewed	p.R174I	1.000	114	0%	115	38.3%	-	-	unknown(0)	tolerated(0.26)	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
C14orf1	11161	genome.wustl.edu	37	14	76117975	76117975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007176.2	-1	validated	p.F116V	1.000	161	0%	136	34.6%	-	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_Erg28
TGFB3	7043	genome.wustl.edu	37	14	76437591	76437591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003239.2	-1	reviewed	p.R175Q	0.991	62	0%	35	37.1%	-	-	benign(0.005)	tolerated(0.33)	neutral(0.024)	HMMPfam_TGFb_propeptide
IFT43	112752	genome.wustl.edu	37	14	76549608	76549608	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052873.2	+1	validated	p.L166	0.003	134	0%	101	34.7%	-	-	-	-	-	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77319580	77319580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194287.2	+1	validated	p.L279M	0.882	104	0%	101	38.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00368,superfamily_RNI-like
SAMD15	161394	genome.wustl.edu	37	14	77844680	77844680	+	Missense_Mutation	SNP	C	C	T	rs113603159		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010860.1	+1	provisional	p.R307W	0.000	45	0%	83	47%	-	-	possibly_damaging(0.794)	deleterious(0.01)	deleterious(0.704)	NULL
SAMD15	161394	genome.wustl.edu	37	14	77845059	77845059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010860.1	+1	provisional	p.S433Y	0.003	68	0%	91	35.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NRXN3	9369	genome.wustl.edu	37	14	79433667	79433667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004796.4	+1	reviewed	p.N592S	1.000	92	0%	27	44.4%	-	-	benign(0.033)	deleterious(0.04)	neutral(0.350)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
DIO2	1734	genome.wustl.edu	37	14	80669266	80669266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007023.2	-1	reviewed	p.Q232H	1.000	75	0%	25	24%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_T4_deiodinase
DIO2	1734	genome.wustl.edu	37	14	80669488	80669488	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007023.2	-1	reviewed	p.R158	1.000	72	0%	30	36.7%	-	-	-	-	-	HMMPfam_T4_deiodinase
CEP128	145508	genome.wustl.edu	37	14	80993272	80993272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152446.3	-1	validated	p.R1005C	0.001	159	0%	59	39%	-	-	unknown(0)	tolerated(0.09)	-	NULL
FLRT2	23768	genome.wustl.edu	37	14	86088862	86088862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013231.4	+1	reviewed	p.R335Q	1.000	84	0%	52	25%	-	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMSmart_LRRCT,superfamily_SSF52058
GPR65	8477	genome.wustl.edu	37	14	88477411	88477411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003608.3	+1	validated	p.T74A	0.974	127	0%	45	20%	-	-	benign(0.198)	tolerated(0.38)	neutral(0.037)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR65	8477	genome.wustl.edu	37	14	88478086	88478086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003608.3	+1	validated	p.Y299H	0.084	179	0%	31	12.9%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Family A G protein-coupled receptor-like
PTPN21	11099	genome.wustl.edu	37	14	88946509	88946509	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007039.3	-1	reviewed	p.T422	0.000	67	0%	108	37%	-	-	-	-	-	NULL
ZC3H14	79882	genome.wustl.edu	37	14	89039294	89039294	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024824.4	+1	validated	p.S268	0.944	105	0%	81	32.1%	-	-	-	-	-	NULL
EML5	161436	genome.wustl.edu	37	14	89082504	89082504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183387.2	-1	validated	p.A1960V	1.000	118	0%	35	11.4%	-	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FOXN3	1112	genome.wustl.edu	37	14	89629151	89629151	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085471.1	-1	reviewed	p.S360	1.000	37	0%	39	17.9%	-	-	-	-	-	NULL
FOXN3	1112	genome.wustl.edu	37	14	89647088	89647088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085471.1	-1	reviewed	p.R292W	0.998	16	0%	19	42.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCNK13	56659	genome.wustl.edu	37	14	90651135	90651135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022054.2	+1	reviewed	p.G339R	0.998	26	0%	19	42.1%	-	-	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	NULL
PSMC1	5700	genome.wustl.edu	37	14	90729661	90729661	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002802.2	+1	reviewed	e4-1	1.000	73	0%	59	39%	-	-	-	-	-	-
C14orf102	55051	genome.wustl.edu	37	14	90755279	90755279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017970.2	-1	validated	p.E814*	0.028	69	0%	71	36.6%	-	-	-	-	-	NULL
TTC7B	145567	genome.wustl.edu	37	14	91077134	91077134	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010854.1	-1	provisional	p.R640*	1.000	152	0%	165	32.7%	-	-	-	-	-	superfamily_TPR-like
GPR68	8111	genome.wustl.edu	37	14	91701160	91701160	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003485.3	-1	validated	p.Q89*	1.000	52	0%	81	40.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CCDC88C	440193	genome.wustl.edu	37	14	91766395	91766395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080414.2	-1	validated	p.R1219C	0.999	34	0%	66	30.3%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91805703	91805703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080414.2	-1	validated	p.S243I	1.000	188	0%	321	14%	-	-	possibly_damaging(0.906)	tolerated(0.42)	neutral(0.373)	superfamily_Prefoldin
SMEK1	55671	genome.wustl.edu	37	14	91925204	91925204	+	Missense_Mutation	SNP	C	C	T	rs189558489	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032560.4	-1	validated	p.V788M	1.000	240	0%	123	36.6%	-	-	possibly_damaging(0.759)	deleterious(0.04)	deleterious(0.630)	NULL
TC2N	123036	genome.wustl.edu	37	14	92253902	92253902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128595.1	-1	validated	p.L373I	1.000	180	0%	88	34.1%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TC2N	123036	genome.wustl.edu	37	14	92265403	92265403	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128595.1	-1	validated	p.H189	1.000	100	0%	28	28.6%	-	-	-	-	-	NULL
FBLN5	10516	genome.wustl.edu	37	14	92353639	92353639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006329.3	-1	reviewed	p.T213A	0.001	105	0%	74	21.6%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBLN5	10516	genome.wustl.edu	37	14	92403520	92403520	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006329.3	-1	reviewed	p.P50	0.173	90	0%	91	34.1%	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TRIP11	9321	genome.wustl.edu	37	14	92465695	92465695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004239.3	-1	reviewed	p.S1594Y	1.000	216	0%	56	46.4%	-	-	probably_damaging(0.961)	tolerated(0.5)	neutral(0.414)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92472313	92472313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004239.3	-1	reviewed	p.K669N	1.000	97	0%	39	20.5%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92600648	92600648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000443529	+1	known	p.G122*	1.000	252	0%	147	35.4%	-	-	benign(0.333)	tolerated(0.13)	neutral(0.357)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92620732	92620732	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017437.1	+1	validated	p.E391*	1.000	143	0%	43	23.3%	-	-	-	-	-	NULL
RIN3	79890	genome.wustl.edu	37	14	93022111	93022111	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024832.3	+1	validated	p.V20	0.274	108	0%	84	35.7%	-	-	-	-	-	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93273266	93273266	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005113.2	+1	reviewed	p.E244*	1.000	140	0%	66	39.4%	-	-	-	-	-	HMMPfam_Golgin_A5
BTBD7	55727	genome.wustl.edu	37	14	93717990	93717990	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002860.2	-1	validated	p.L587	0.079	121	0%	50	12%	-	-	-	-	-	NULL
BTBD7	55727	genome.wustl.edu	37	14	93760885	93760885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002860.2	-1	validated	p.A161T	1.000	65	0%	24	33.3%	-	-	possibly_damaging(0.947)	deleterious(0.02)	deleterious(0.774)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IFI27L2	83982	genome.wustl.edu	37	14	94594225	94594225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032036.2	-1	validated	p.P102T	0.033	230	0%	250	36.4%	-	-	probably_damaging(0.961)	tolerated(0.18)	neutral(0.460)	NULL
IFI27L2	83982	genome.wustl.edu	37	14	94594883	94594883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032036.2	-1	validated	p.A56V	0.034	58	0%	67	41.8%	-	-	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	HMMPfam_Ifi-6-16
SERPINA4	5267	genome.wustl.edu	37	14	95030252	95030252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006215.2	+1	provisional	p.L145M	0.036	105	0%	69	14.5%	-	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
DICER1	23405	genome.wustl.edu	37	14	95579430	95579430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030621.3	-1	reviewed	p.V680A	1.000	115	0%	50	34%	-	-	benign(0.059)	tolerated(0.14)	neutral(0.254)	HMMPfam_dsRNA_bind
C14orf49	161176	genome.wustl.edu	37	14	95932343	95932343	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152592.3	-1	validated	p.I184	0.996	64	0%	71	40.8%	-	-	-	-	-	superfamily_Spectrin repeat
TCL6	27004	genome.wustl.edu	37	14	96135887	96135887	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000342332	+1	known	NULL	0.004	96	0%	50	30%	-	-	-	-	-	-
PAPOLA	10914	genome.wustl.edu	37	14	97031385	97031385	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032632.3	+1	validated	p.*746Q	1.000	204	0%	35	34.3%	-	-	-	-	-	NULL
BCL11B	64919	genome.wustl.edu	37	14	99640651	99640651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138576.2	-1	reviewed	p.R841H	1.000	29	0%	79	32.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP46A1	10858	genome.wustl.edu	37	14	100184455	100184455	+	Silent	SNP	C	C	T	rs187491029	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006668.1	+1	reviewed	p.I324	0.998	51	0%	77	35.1%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
DEGS2	123099	genome.wustl.edu	37	14	100615448	100615448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206918.2	-1	reviewed	p.H228Y	1.000	10	0%	22	22.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_FA_desaturase
SLC25A47	283600	genome.wustl.edu	37	14	100792539	100792539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207117.2	+1	validated	p.V40I	0.388	43	0%	72	37.5%	-	-	benign(0)	tolerated(1)	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
WDR25	79446	genome.wustl.edu	37	14	100934370	100934370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024515.4	+1	validated	p.V279M	0.974	63	0%	58	44.8%	-	-	possibly_damaging(0.925)	tolerated(0.22)	neutral(0.415)	superfamily_WD40 repeat-like
RTL1	388015	genome.wustl.edu	37	14	101348103	101348103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134888.2	-1	reviewed	p.N1008S	0.000	72	0%	123	27.6%	-	-	benign(0.014)	tolerated(0.35)	neutral(0.021)	NULL
RTL1	388015	genome.wustl.edu	37	14	101349264	101349264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134888.2	-1	reviewed	p.A621D	0.008	70	0%	118	34.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DNA/RNA polymerases
RTL1	388015	genome.wustl.edu	37	14	101350109	101350109	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134888.2	-1	reviewed	p.F339	0.820	61	0%	104	45.2%	-	-	-	-	-	NULL
DIO3	1735	genome.wustl.edu	37	14	102028413	102028413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001362.3	+1	reviewed	p.L168I	1.000	21	0%	42	45.2%	-	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_T4_deiodinase
DYNC1H1	1778	genome.wustl.edu	37	14	102449831	102449831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.V449A	1.000	92	0%	70	34.3%	-	-	benign(0.055)	tolerated(0.24)	neutral(0.041)	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102463483	102463483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.R1226W	1.000	52	0%	27	51.9%	-	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102467510	102467510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.S1405Y	1.000	146	0%	118	39%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DHC_N2
DYNC1H1	1778	genome.wustl.edu	37	14	102476409	102476409	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.I2069	0.903	20	0%	32	28.1%	-	-	-	-	-	superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102481616	102481616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.R2397W	0.547	37	2.7%	41	41.5%	-	-	benign(0.058)	tolerated(0.09)	neutral(0.300)	superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102499417	102499417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.E3365D	1.000	231	0%	181	32.6%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102500443	102500443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001376.4	+1	reviewed	p.A3515V	1.000	139	0%	124	28.2%	-	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
HSP90AA1	3320	genome.wustl.edu	37	14	102548099	102548099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017963.2	-1	validated	p.P839S	1.000	190	0%	250	38.4%	-	-	benign(0.323)	deleterious(0.03)	neutral(0.466)	HMMPfam_HSP90
HSP90AA1	3320	genome.wustl.edu	37	14	102548753	102548753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017963.2	-1	validated	p.S717F	1.000	177	0%	187	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
ZNF839	55778	genome.wustl.edu	37	14	102798159	102798159	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018335.3	+1	validated	p.S464	0.000	40	0%	50	42%	-	-	-	-	-	NULL
TECPR2	9895	genome.wustl.edu	37	14	102916201	102916201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014844.3	+1	validated	p.L1104P	1.000	131	0%	157	36.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AMN	81693	genome.wustl.edu	37	14	103395200	103395200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030943.3	+1	reviewed	p.R134H	1.000	16	0%	30	30%	-	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103406423	103406423	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006035.3	-1	reviewed	p.C1517	0.391	181	0%	277	35.7%	-	-	-	-	-	HMMSmart_CNH
EXOC3L4	91828	genome.wustl.edu	37	14	103566680	103566680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077594.1	+1	validated	p.R42C	0.000	10	0%	34	23.5%	-	-	possibly_damaging(0.765)	tolerated(0.14)	deleterious(0.533)	NULL
TRMT61A	115708	genome.wustl.edu	37	14	103999151	103999151	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152307.2	+1	validated	p.A188	0.070	9	0.000	42	0.238	-	-	-	-	-	HMMPfam_GCD14,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
KLC1	3831	genome.wustl.edu	37	14	104153422	104153422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130107.1	+1	reviewed	p.G552D	1.000	101	0%	147	33.3%	-	-	benign(0.341)	tolerated(0.15)	neutral(0.348)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104506621	104506621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153046.2	+1	validated	p.D1269N	0.998	143	0%	98	37.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASPG	374569	genome.wustl.edu	37	14	104573520	104573520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080464.1	+1	provisional	p.G424D	0.961	17	0%	40	22.5%	-	-	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
AKT1	207	genome.wustl.edu	37	14	105246525	105246525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014431.1	-1	reviewed	p.R25	0.991	35	0%	116	39.7%	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA0284	283638	genome.wustl.edu	37	14	105352985	105352985	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001112726.1	+1	validated	p.N803	0.001	12	0%	32	25%	-	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105404880	105404880	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138420.2	-1	validated	p.K5636	0.000	68	0%	100	28%	-	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105410361	105410361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138420.2	-1	validated	p.K3809N	0.051	225	0%	320	35.6%	-	-	unknown(0)	deleterious(0.01)	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105412734	105412734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138420.2	-1	validated	p.Q3018	0.000	177	0%	223	35.9%	-	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105419663	105419663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138420.2	-1	validated	p.V709M	0.012	168	0%	228	38.2%	-	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	NULL
GPR132	29933	genome.wustl.edu	37	14	105518059	105518059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013345.2	-1	reviewed	p.D139N	1.000	41	0%	80	26.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
BRF1	2972	genome.wustl.edu	37	14	105692471	105692471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001519.2	-1	reviewed	p.I328S	0.972	162	0%	339	35.7%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
BRF1	2972	genome.wustl.edu	37	14	105739059	105739059	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001519.2	-1	reviewed	p.P146	0.126	29	0%	53	54.7%	-	-	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_TFIIB
C14orf80	283643	genome.wustl.edu	37	14	105964989	105964989	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134875.1	+1	validated	p.A329	0.000	20	0%	54	44.4%	-	-	-	-	-	NULL
IGHE	3497	genome.wustl.edu	37	14	106067911	106067911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390541	-1	known	p.T52N	0.000	207	0%	331	10.3%	-	-	possibly_damaging(0.624)	deleterious(0.04)	deleterious(0.567)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHD	3495	genome.wustl.edu	37	14	106311851	106311851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390556	-1	known	p.S54P	0.000	260	0%	408	37.5%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
IGHV3-7	28452	genome.wustl.edu	37	14	106518569	106518569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390598	-1	known	p.G61E	1.000	267	0%	156	36.5%	-	-	possibly_damaging(0.611)	tolerated(0.09)	deleterious(0.508)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV@	3509	genome.wustl.edu	37	14	106725475	106725475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390609	-1	known	p.S26Y	0.315	106	0.9%	75	42.7%	-	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_V-set,superfamily_Immunoglobulin
IGHV4-28	28400	genome.wustl.edu	37	14	106780651	106780651	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390612	-1	known	p.I71	0.000	404	0%	492	21.5%	-	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-53	28420	genome.wustl.edu	37	14	107048786	107048786	+	Silent	SNP	G	G	A	rs143408345	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390627	-1	known	p.Y78	0.002	356	0%	161	24.2%	-	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV3-64	28414	genome.wustl.edu	37	14	107113744	107113744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454421	-1	known	p.A117	0.178	180	0%	75	28%	-	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
LOC727924	727924	genome.wustl.edu	37	15	22332515	22332515	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_015416.1	+1	predicted	NULL	0.034	497	0%	111	17.1%	-	-	-	-	-	-
OR4N4	283694	genome.wustl.edu	37	15	22383069	22383069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005241.1	+1	provisional	p.M199I	0.956	399	0.3%	257	14.8%	-	-	benign(0.003)	tolerated(0.47)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N4	283694	genome.wustl.edu	37	15	22383382	22383382	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005241.1	+1	provisional	p.R304*	0.004	97	0%	61	32.8%	-	-	-	-	-	superfamily_SSF81321
GOLGA6L1	283767	genome.wustl.edu	37	15	22743233	22743233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001413.3	+1	provisional	p.R540*	0.260	632	0%	346	19.7%	-	-	-	-	-	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22851110	22851110	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102610.1	+1	validated	e11+1	1.000	155	0%	95	41.1%	-	-	-	-	-	-
CYFIP1	23191	genome.wustl.edu	37	15	22956130	22956130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033028.1	+1	validated	p.A25V	1.000	125	0%	195	30.3%	-	-	unknown(0)	tolerated(0.38)	-	HMMPfam_FragX_IP
CYFIP1	23191	genome.wustl.edu	37	15	22956240	22956240	+	Missense_Mutation	SNP	G	G	A	rs139191809	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033028.1	+1	validated	p.A62T	0.001	123	0%	172	36.6%	-	-	unknown(0)	-	-	HMMPfam_FragX_IP
GOLGA8IP	283796	genome.wustl.edu	37	15	23259300	23259300	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024074.1	+1	provisional	NULL	0.623	113	0%	96	18.8%	-	-	-	-	-	-
MKRN3	7681	genome.wustl.edu	37	15	23811081	23811081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005664.3	+1	reviewed	p.A51V	0.000	6	0.000	28	0.357	-	-	possibly_damaging(0.763)	tolerated(0.2)	neutral(0.332)	NULL
MKRN3	7681	genome.wustl.edu	37	15	23812277	23812277	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005664.3	+1	reviewed	p.R450*	0.070	149	0%	191	28.8%	-	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24922938	24922938	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018958.2	+1	reviewed	p.E642*	0.001	108	0%	170	39.4%	-	-	-	-	-	NULL
SNRPN	6638	genome.wustl.edu	37	15	25220558	25220558	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003097.3	+1	reviewed	p.C19	0.998	214	0%	123	28.5%	-	-	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
SNRPN	6638	genome.wustl.edu	37	15	25223426	25223426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003097.3	+1	reviewed	p.P216S	1.000	138	0%	87	40.2%	-	-	unknown(0)	tolerated(0.21)	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25939999	25939999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024490.3	-1	reviewed	p.R1019W	0.983	44	0%	36	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56784
ATP10A	57194	genome.wustl.edu	37	15	25953353	25953353	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024490.3	-1	reviewed	p.I813	0.845	70	0%	112	40.2%	-	-	-	-	-	superfamily_SSF56784,superfamily_SSF81660
ATP10A	57194	genome.wustl.edu	37	15	25972316	25972316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024490.3	-1	reviewed	p.I280V	1.000	98	0%	164	12.2%	-	-	benign(0.002)	tolerated(1)	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
GABRB3	2562	genome.wustl.edu	37	15	27017560	27017560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000814.4	-1	reviewed	p.E77K	1.000	20	0%	38	23.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA5	2558	genome.wustl.edu	37	15	27128335	27128335	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000810.3	+1	reviewed	p.T77	0.003	55	0%	88	29.5%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA5	2558	genome.wustl.edu	37	15	27188485	27188485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000810.3	+1	reviewed	p.A334V	0.992	38	0%	55	27.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
OCA2	4948	genome.wustl.edu	37	15	28234794	28234794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000275.2	-1	reviewed	p.V379M	0.999	114	0%	104	31.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CitMHS
OCA2	4948	genome.wustl.edu	37	15	28277273	28277273	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000275.2	-1	reviewed	p.R88	0.011	133	0%	82	43.9%	-	-	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28358367	28358367	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.I4694	0.811	23	0%	52	32.7%	-	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC2	8924	genome.wustl.edu	37	15	28375399	28375399	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.R4238	0.969	89	0%	117	30.8%	-	-	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28397857	28397857	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.D3622	0.990	54	0%	47	29.8%	-	-	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28443818	28443818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.L2605P	1.000	89	0%	94	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC2	8924	genome.wustl.edu	37	15	28499552	28499552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.T995M	1.000	215	0%	241	41.1%	-	-	benign(0.097)	deleterious(0.01)	neutral(0.413)	NULL
HERC2	8924	genome.wustl.edu	37	15	28511022	28511022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004667.4	-1	reviewed	p.I566T	1.000	49	0%	47	38.3%	-	-	possibly_damaging(0.448)	deleterious(0)	deleterious(0.591)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
APBA2	321	genome.wustl.edu	37	15	29397594	29397594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005503.3	+1	reviewed	p.A513T	1.000	58	0%	101	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
TJP1	7082	genome.wustl.edu	37	15	30012620	30012620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003257.3	-1	validated	p.A902V	1.000	330	0%	194	33%	-	-	probably_damaging(0.955)	tolerated(0.5)	neutral(0.409)	NULL
TJP1	7082	genome.wustl.edu	37	15	30020172	30020172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003257.3	-1	validated	p.R690H	1.000	194	0%	157	33.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRPM1	4308	genome.wustl.edu	37	15	31295039	31295039	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002420.4	-1	reviewed	p.S1266	0.020	104	0%	60	33.3%	-	-	-	-	-	NULL
CHRNA7	1139	genome.wustl.edu	37	15	32460303	32460303	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000746.3	+1	reviewed	p.L385	1.000	36	0%	84	17.9%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GREM1	26585	genome.wustl.edu	37	15	33023128	33023128	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000322805	+1	known	e2-1	1.000	18	0%	24	29.2%	-	-	-	-	-	-
FMN1	342184	genome.wustl.edu	37	15	33359114	33359114	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103184.2	-1	validated	p.Q324	0.000	62	0%	46	41.3%	-	-	-	-	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33359618	33359618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103184.2	-1	validated	p.E156D	0.000	51	0%	30	26.7%	-	-	unknown(0)	tolerated(0.6)	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33603279	33603279	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001036.3	+1	validated	p.E11	1.000	27	0%	36	16.7%	-	-	-	-	-	HMMPfam_Ins145_P3_rec
RYR3	6263	genome.wustl.edu	37	15	34080414	34080414	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000361728	+1	known	e67-1	0.000	43	0%	12	33.3%	-	-	-	-	-	-
RYR3	6263	genome.wustl.edu	37	15	34080613	34080613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001036.3	+1	validated	p.L3262F	1.000	53	0%	23	34.8%	-	-	probably_damaging(0.998)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34115226	34115226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001036.3	+1	validated	p.K3675N	1.000	226	0%	92	40.2%	-	-	possibly_damaging(0.925)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34115270	34115270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001036.3	+1	validated	p.C3690F	1.000	201	0%	90	36.7%	-	-	probably_damaging(0.998)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130197	34130197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001036.3	+1	validated	p.P4006S	1.000	80	0%	42	33.3%	-	-	possibly_damaging(0.729)	-	-	NULL
CHRM5	1133	genome.wustl.edu	37	15	34355947	34355947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012125.3	+1	validated	p.E343D	0.016	112	0%	58	41.4%	-	-	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
C15orf24	56851	genome.wustl.edu	37	15	34388110	34388110	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020154.2	-1	validated	p.S114	0.964	118	0%	88	34.1%	-	-	-	-	-	HMMPfam_DUF2012
GOLGA8A	23015	genome.wustl.edu	37	15	34679056	34679056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000432566	-1	known	p.A47T	0.196	168	0%	252	20.2%	-	-	possibly_damaging(0.748)	-	-	NULL
ENSG00000248276	0	genome.wustl.edu	37	15	35377261	35377261	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000514460	+1	known	NULL	0.001	158	0%	248	50%	-	-	-	-	-	-
MEIS2	4212	genome.wustl.edu	37	15	37388540	37388540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170675.2	-1	reviewed	p.V113I	1.000	21	0%	38	36.8%	-	-	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38229112	38229112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152453.2	+1	provisional	p.R69C	0.002	172	0%	72	40.3%	-	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
THBS1	7057	genome.wustl.edu	37	15	39876592	39876592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003246.2	+1	reviewed	p.T332I	0.999	121	0%	186	31.7%	-	-	probably_damaging(0.991)	tolerated(0.25)	deleterious(0.481)	HMMPfam_VWC,HMMSmart_SM00214
THBS1	7057	genome.wustl.edu	37	15	39885354	39885354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003246.2	+1	reviewed	p.D974G	1.000	38	0%	21	33.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases
GPR176	11245	genome.wustl.edu	37	15	40093661	40093661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007223.1	-1	provisional	p.S407I	0.000	122	0%	74	27%	-	-	benign(0.002)	deleterious(0.05)	neutral(0.345)	NULL
DISP2	85455	genome.wustl.edu	37	15	40662024	40662024	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033510.1	+1	reviewed	p.Y1237	0.994	17	0%	35	28.6%	-	-	-	-	-	NULL
ENSG00000246741	0	genome.wustl.edu	37	15	40849291	40849291	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501408	+1	known	NULL	0.002	23	0%	14	50%	-	-	-	-	-	-
CASC5	57082	genome.wustl.edu	37	15	40903694	40903694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170589.3	+1	validated	p.N116S	0.888	19	0%	14	42.9%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
VPS18	57617	genome.wustl.edu	37	15	41195262	41195262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020857.2	+1	reviewed	p.A882V	0.907	44	0%	87	41.4%	-	-	benign(0.005)	tolerated(0.55)	neutral(0.007)	NULL
LOC100288995	100288995	genome.wustl.edu	37	15	41222009	41222009	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343338.1	-1	model	p.D575	0.012	10	0%	15	40%	-	-	-	-	-	NULL
EXD1	161829	genome.wustl.edu	37	15	41501724	41501724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152596.2	-1	provisional	p.R112H	1.000	120	0.8%	86	41.9%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00474,superfamily_Ribonuclease H-like
NUSAP1	51203	genome.wustl.edu	37	15	41663804	41663804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016359.3	+1	validated	p.V310M	0.000	59	0%	50	40%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
NDUFAF1	51103	genome.wustl.edu	37	15	41688707	41688707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016013.2	-1	validated	p.A184V	0.999	75	0%	87	26.4%	-	-	probably_damaging(0.954)	tolerated(0.06)	deleterious(0.720)	HMMPfam_CIA30
NDUFAF1	51103	genome.wustl.edu	37	15	41688709	41688709	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016013.2	-1	validated	p.C183	1.000	73	0%	87	27.6%	-	-	-	-	-	HMMPfam_CIA30
LTK	4058	genome.wustl.edu	37	15	41796978	41796978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002344.5	-1	reviewed	p.D705N	1.000	46	0%	66	15.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RPAP1	26015	genome.wustl.edu	37	15	41813184	41813184	+	Missense_Mutation	SNP	C	C	T	rs141822756	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015540.2	-1	reviewed	p.R1067Q	0.013	22	0%	51	33.3%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41815134	41815134	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015540.2	-1	reviewed	p.P857	0.084	85	0%	100	41%	-	-	-	-	-	NULL
RPAP1	26015	genome.wustl.edu	37	15	41823376	41823376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015540.2	-1	reviewed	p.R263I	0.987	99	1%	96	29.2%	-	-	probably_damaging(0.956)	deleterious(0.02)	deleterious(0.782)	HMMPfam_RPAP1_N
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42127282	42127282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005090.3	+1	validated	p.F111	0.000	27	0%	59	25.4%	-	-	-	-	-	superfamily_Clavaminate synthase-like
JMJD7	100137047	genome.wustl.edu	37	15	42129066	42129066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114632.1	+1	validated	p.R264W	0.991	29	0%	54	35.2%	-	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
SPTBN5	51332	genome.wustl.edu	37	15	42145808	42145808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016642.2	-1	validated	p.A3283S	0.000	15	0%	25	56%	-	-	benign(0.256)	tolerated(0.6)	neutral(0.031)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42159234	42159234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016642.2	-1	validated	p.K2100E	0.251	6	0.000	15	0.467	-	-	possibly_damaging(0.799)	deleterious(0.02)	deleterious(0.684)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EHD4	30844	genome.wustl.edu	37	15	42211752	42211752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139265.3	-1	validated	p.A194T	1.000	40	0%	48	33.3%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_Dynamin_N,superfamily_SSF52540
PLA2G4E	123745	genome.wustl.edu	37	15	42289390	42289390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080490.1	-1	provisional	p.R319W	1.000	21	0%	22	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4E	123745	genome.wustl.edu	37	15	42292188	42292188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080490.1	-1	provisional	p.R259H	0.933	56	0%	77	36.4%	-	-	benign(0.076)	tolerated(0.13)	neutral(0.258)	NULL
PLA2G4D	283748	genome.wustl.edu	37	15	42362936	42362936	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178034.3	-1	validated	p.Y674	0.748	94	0%	118	41.5%	-	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4D	283748	genome.wustl.edu	37	15	42374525	42374525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178034.3	-1	validated	p.R245S	0.261	81	0%	108	35.2%	-	-	benign(0.001)	tolerated(0.92)	-	NULL
PLA2G4F	255189	genome.wustl.edu	37	15	42434800	42434800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213600.3	-1	validated	p.A752D	0.113	39	0%	43	34.9%	-	-	benign(0.005)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
CAPN3	825	genome.wustl.edu	37	15	42691746	42691746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000070.2	+1	reviewed	p.T417M	1.000	76	0%	61	45.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
ZFP106	64397	genome.wustl.edu	37	15	42743268	42743268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022473.1	-1	provisional	p.P378L	0.878	326	0%	123	34.1%	-	-	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
STARD9	57519	genome.wustl.edu	37	15	42979636	42979636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001129482.3	+1	model	p.R1868C	0.000	45	0%	23	34.8%	-	-	benign(0)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42984526	42984526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001129482.3	+1	model	p.H3498N	0.000	16	0%	22	36.4%	-	-	benign(0.082)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	43011041	43011041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001129482.3	+1	model	p.S4559N	1.000	85	0%	68	41.2%	-	-	possibly_damaging(0.915)	-	-	superfamily_Bet v1-like
TTBK2	146057	genome.wustl.edu	37	15	43075755	43075755	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173500.3	-1	reviewed	p.S353	0.998	73	0%	29	34.5%	-	-	-	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43324803	43324803	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174916.2	-1	reviewed	p.L739	1.000	74	0%	37	18.9%	-	-	-	-	-	NULL
TMEM62	80021	genome.wustl.edu	37	15	43438738	43438738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024956.3	+1	provisional	p.S175I	0.339	196	0%	86	34.9%	-	-	benign(0.012)	tolerated(0.15)	neutral(0.241)	superfamily_SSF56300
CCNDBP1	23582	genome.wustl.edu	37	15	43483731	43483731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012142.3	+1	reviewed	p.L240I	1.000	93	0%	70	40%	-	-	probably_damaging(0.968)	tolerated(0.17)	deleterious(0.469)	NULL
EPB42	2038	genome.wustl.edu	37	15	43500445	43500445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000119.2	-1	reviewed	p.A383D	0.005	85	0%	117	35%	-	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMSmart_TGc,superfamily_SSF54001
TGM5	9333	genome.wustl.edu	37	15	43526989	43526989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201631.3	-1	reviewed	p.S618Y	0.041	223	0%	243	34.6%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_Transglutaminase two C-terminal domains
TGM5	9333	genome.wustl.edu	37	15	43552747	43552747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201631.3	-1	reviewed	p.S14I	0.134	68	0%	93	14%	-	-	benign(0.026)	tolerated(0.39)	neutral(0.017)	HMMPfam_Transglut_N,superfamily_E set domains
LCMT2	9836	genome.wustl.edu	37	15	43621812	43621812	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014793.3	-1	reviewed	p.P292	0.995	41	0%	64	20.3%	-	-	-	-	-	HMMPfam_LCM,superfamily_SSF53335
TUBGCP4	27229	genome.wustl.edu	37	15	43696621	43696621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014444.2	+1	provisional	p.R620H	1.000	102	0%	41	34.1%	-	-	possibly_damaging(0.915)	deleterious(0.02)	deleterious(0.750)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43699769	43699769	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141980.1	-1	validated	e28-1	1.000	84	0%	38	47.4%	-	-	-	-	-	-
TP53BP1	7158	genome.wustl.edu	37	15	43748904	43748904	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141980.1	-1	validated	p.P634	0.960	158	0%	80	32.5%	-	-	-	-	-	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43773165	43773165	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141980.1	-1	validated	p.E143*	0.174	374	0%	303	37.3%	-	-	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43813866	43813866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002373.5	+1	reviewed	p.G65	0.996	222	0%	264	39%	-	-	-	-	-	superfamily_Metallo-hydrolase/oxidoreductase
PPIP5K1	9677	genome.wustl.edu	37	15	43827016	43827016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130858.1	-1	validated	p.F1386L	0.076	111	0%	63	38.1%	-	-	benign(0.117)	deleterious(0)	neutral(0.454)	NULL
STRC	161497	genome.wustl.edu	37	15	43896572	43896572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153700.2	-1	reviewed	p.S1402Y	1.000	178	0%	110	25.5%	-	-	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	NULL
CKMT1A	548596	genome.wustl.edu	37	15	43988299	43988299	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001015001.1	+1	reviewed	p.D243	1.000	414	0%	494	18.2%	-	-	-	-	-	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
CKMT1A	548596	genome.wustl.edu	37	15	43988498	43988498	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001015001.1	+1	reviewed	p.I271	1.000	401	0%	424	29.5%	-	-	-	-	-	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
STRC	161497	genome.wustl.edu	37	15	44000999	44000999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000381686	-1	known	p.Q1169H	1.000	140	0%	95	33.7%	-	-	-	-	-	NULL
PDIA3	2923	genome.wustl.edu	37	15	44060688	44060688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005313.4	+1	reviewed	p.R344C	1.000	152	0%	102	30.4%	-	-	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
FRMD5	84978	genome.wustl.edu	37	15	44216405	44216405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032892.3	-1	validated	p.R69W	1.000	186	0%	102	26.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
EIF3J	8669	genome.wustl.edu	37	15	44846811	44846811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003758.2	+1	validated	p.R119W	0.890	146	0%	131	35.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_eIF3_subunit
SPG11	80208	genome.wustl.edu	37	15	44861698	44861698	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025137.3	-1	reviewed	p.R2161	0.049	130	0%	69	39.1%	-	-	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44876039	44876039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025137.3	-1	reviewed	p.D1947N	0.000	145	0%	85	48.2%	-	-	benign(0.072)	tolerated(0.96)	neutral(0.005)	NULL
SPG11	80208	genome.wustl.edu	37	15	44890829	44890829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025137.3	-1	reviewed	p.A1298S	1.000	184	0%	119	37.8%	-	-	possibly_damaging(0.538)	tolerated(0.67)	neutral(0.184)	NULL
SPG11	80208	genome.wustl.edu	37	15	44951502	44951502	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025137.3	-1	reviewed	e3-1	1.000	108	0%	85	37.6%	-	-	-	-	-	-
PATL2	197135	genome.wustl.edu	37	15	44961567	44961567	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145112.1	-1	validated	p.R325	0.002	51	0%	74	40.5%	-	-	-	-	-	HMMPfam_PAT1
DUOX2	50506	genome.wustl.edu	37	15	45402170	45402170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014080.4	-1	reviewed	p.S350I	1.000	141	0%	209	39.2%	-	-	possibly_damaging(0.459)	tolerated(0.05)	deleterious(0.496)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
DUOX1	53905	genome.wustl.edu	37	15	45445640	45445640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017434.3	+1	reviewed	p.L1163I	1.000	163	0%	198	31.3%	-	-	possibly_damaging(0.864)	deleterious(0.02)	deleterious(0.718)	HMMPfam_Ferric_reduct
DUOX1	53905	genome.wustl.edu	37	15	45454149	45454149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017434.3	+1	reviewed	p.R1357I	0.457	39	0%	80	26.3%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
SEMA6D	80031	genome.wustl.edu	37	15	48052587	48052587	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153618.1	+1	reviewed	p.R66*	1.000	145	0%	53	34%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48054483	48054483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153618.1	+1	reviewed	p.R209C	0.990	99	0%	31	51.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MYEF2	50804	genome.wustl.edu	37	15	48441449	48441449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016132.3	-1	validated	p.D500N	1.000	177	0.6%	40	30%	-	-	possibly_damaging(0.889)	tolerated(0.07)	deleterious(0.668)	superfamily_RNA-binding domain RBD
FBN1	2200	genome.wustl.edu	37	15	48748865	48748865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000138.4	-1	reviewed	p.F1797L	1.000	157	0%	48	33.3%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48766840	48766840	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000138.4	-1	reviewed	p.N1324	1.000	135	0%	56	30.4%	-	-	-	-	-	HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48797345	48797345	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000138.4	-1	reviewed	e15-1	1.000	163	0%	44	38.6%	-	-	-	-	-	-
CEP152	22995	genome.wustl.edu	37	15	49081012	49081012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014985.2	-1	provisional	p.A387T	0.692	150	0%	61	26.2%	-	-	possibly_damaging(0.8)	tolerated(0.36)	neutral(0.321)	NULL
SHC4	399694	genome.wustl.edu	37	15	49160043	49160043	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203349.3	-1	validated	p.Y306	0.999	210	0%	121	33.9%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SHC4	399694	genome.wustl.edu	37	15	49254676	49254676	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203349.3	-1	validated	p.R179	0.000	67	0%	101	32.7%	-	-	-	-	-	superfamily_PH domain-like
SECISBP2L	9728	genome.wustl.edu	37	15	49304909	49304909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014701.2	-1	provisional	p.S511Y	1.000	194	0%	69	33.3%	-	-	possibly_damaging(0.708)	deleterious(0.04)	deleterious(0.605)	NULL
COPS2	9318	genome.wustl.edu	37	15	49420271	49420271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143887.1	-1	validated	p.D410V	1.000	164	0%	48	39.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
FGF7	2252	genome.wustl.edu	37	15	49776690	49776690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002009.3	+1	reviewed	p.A192T	1.000	52	0%	14	35.7%	-	-	benign(0.065)	tolerated(0.35)	neutral(0.025)	HMMSmart_SM00442,superfamily_Cytokine
HDC	3067	genome.wustl.edu	37	15	50549737	50549737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002112.2	-1	validated	p.S109I	1.000	64	0%	42	42.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyridoxal_deC,superfamily_PyrdxlP-dep_Trfase_major
TRPM7	54822	genome.wustl.edu	37	15	50902126	50902126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017672.4	-1	reviewed	p.I771M	1.000	261	0%	83	34.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPM7	54822	genome.wustl.edu	37	15	50906437	50906437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017672.4	-1	reviewed	p.K506N	1.000	110	0%	51	27.5%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51242073	51242073	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007347.3	+1	validated	p.S456*	1.000	269	0%	72	50%	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
AP4E1	23431	genome.wustl.edu	37	15	51290018	51290018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007347.3	+1	validated	p.N948H	0.711	46	0%	24	33.3%	-	-	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	HMMPfam_Coatamer_beta_C
AP4E1	23431	genome.wustl.edu	37	15	51294832	51294832	+	Missense_Mutation	SNP	G	G	C	rs3825798	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007347.3	+1	validated	p.Q1129H	1.000	136	0%	59	49.2%	-	-	benign(0)	tolerated(0.91)	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51743895	51743895	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015263.3	-1	validated	e41-1	1.000	136	0.7%	54	29.6%	-	-	-	-	-	-
LEO1	123169	genome.wustl.edu	37	15	52242060	52242060	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138792.2	-1	provisional	p.G581	0.960	61	0%	43	30.2%	-	-	-	-	-	HMMPfam_Leo1
MYO5C	55930	genome.wustl.edu	37	15	52510801	52510801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018728.2	-1	validated	p.D1290V	0.014	263	0%	89	30.3%	-	-	benign(0.014)	tolerated(0.27)	neutral(0.034)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52688555	52688555	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000259.3	-1	reviewed	p.C453	1.000	126	0%	56	44.6%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
UNC13C	440279	genome.wustl.edu	37	15	54305334	54305334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080534.1	+1	provisional	p.E78D	1.000	119	0%	22	22.7%	-	-	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54792276	54792276	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080534.1	+1	provisional	e20-1	1.000	242	0%	59	10.2%	-	-	-	-	-	-
PIGB	9488	genome.wustl.edu	37	15	55619759	55619759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004855.4	+1	reviewed	p.L150M	0.942	195	0%	145	46.9%	-	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	HMMPfam_Glyco_transf_22
CCPG1	9236	genome.wustl.edu	37	15	55657404	55657404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004748.3	-1	validated	p.E270D	0.000	84	0%	46	10.9%	-	-	unknown(0)	tolerated(0.5)	-	NULL
PRTG	283659	genome.wustl.edu	37	15	55964816	55964816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173814.4	-1	validated	p.E623V	1.000	65	1.5%	40	27.5%	-	-	possibly_damaging(0.513)	tolerated(0.36)	neutral(0.192)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NEDD4	4734	genome.wustl.edu	37	15	56208075	56208075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198400.2	-1	validated	p.L319I	1.000	107	0%	69	34.8%	-	-	unknown(0)	deleterious(0.01)	-	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56993231	56993231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017661.2	-1	validated	p.T94M	0.778	191	0%	51	29.4%	-	-	benign(0.092)	tolerated(0.1)	neutral(0.293)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56996377	56996377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017661.2	-1	validated	p.D39	1.000	310	0%	126	35.7%	-	-	-	-	-	NULL
POLR2M	81488	genome.wustl.edu	37	15	58000950	58000950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015532.3	+1	reviewed	p.I51S	0.986	42	0%	48	33.3%	-	-	possibly_damaging(0.597)	deleterious(0)	deleterious(0.651)	NULL
LIPC	3990	genome.wustl.edu	37	15	58838141	58838141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000236.2	+1	reviewed	p.L259F	1.000	61	0%	70	34.3%	-	-	possibly_damaging(0.929)	tolerated(0.12)	deleterious(0.637)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
SLTM	79811	genome.wustl.edu	37	15	59181746	59181746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024755.2	-1	validated	p.R696H	0.998	331	0%	87	42.5%	-	-	unknown(0)	deleterious(0.01)	-	NULL
NARG2	79664	genome.wustl.edu	37	15	60747261	60747261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024611.4	-1	validated	p.G295E	1.000	187	0%	58	43.1%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
RORA	6095	genome.wustl.edu	37	15	60803736	60803736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_134260.2	-1	reviewed	p.R203H	1.000	96	0%	58	27.6%	-	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
RORA	6095	genome.wustl.edu	37	15	60907141	60907141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002943.3	-1	reviewed	p.I75V	0.000	46	0%	17	35.3%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62174922	62174922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020821.1	-1	validated	p.K3166T	0.974	133	0%	31	19.4%	-	-	probably_damaging(0.991)	tolerated(0.55)	neutral(0.451)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62207938	62207938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020821.1	-1	validated	p.R2780L	0.998	99	0%	43	27.9%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_DUF1162
VPS13C	54832	genome.wustl.edu	37	15	62226459	62226459	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020821.1	-1	validated	p.E1943*	1.000	128	0%	44	36.4%	-	-	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	62942308	62942308	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015059.2	+1	reviewed	p.S54	0.004	199	0%	103	29.1%	-	-	-	-	-	NULL
TPM1	7168	genome.wustl.edu	37	15	63362098	63362098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018008.1	+1	reviewed	p.R232C	1.000	165	0%	89	39.3%	-	-	benign(0.298)	deleterious(0)	deleterious(0.536)	HMMPfam_Tropomyosin
LACTB	114294	genome.wustl.edu	37	15	63419746	63419746	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032857.2	+1	reviewed	p.E270	0.000	82	0%	85	47.1%	-	-	-	-	-	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
CA12	771	genome.wustl.edu	37	15	63632965	63632965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001218.3	-1	reviewed	p.P181	0.000	167	0%	120	40%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
HERC1	8925	genome.wustl.edu	37	15	63943489	63943489	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003922.3	-1	reviewed	p.G3503	0.898	149	0%	56	32.1%	-	-	-	-	-	superfamily_WD40 repeat-like
HERC1	8925	genome.wustl.edu	37	15	63964811	63964811	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003922.3	-1	reviewed	p.T2643	0.014	166	0%	72	33.3%	-	-	-	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63967258	63967258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003922.3	-1	reviewed	p.P2377S	1.000	125	0%	43	48.8%	-	-	possibly_damaging(0.814)	-	-	NULL
PPIB	5479	genome.wustl.edu	37	15	64448988	64448988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000942.4	-1	reviewed	p.T155M	0.994	171	0%	299	13.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
PLEKHO2	80301	genome.wustl.edu	37	15	65157702	65157702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025201.4	+1	validated	p.G363V	0.009	64	0%	87	35.6%	-	-	possibly_damaging(0.948)	tolerated(0.07)	deleterious(0.710)	NULL
SPG21	51324	genome.wustl.edu	37	15	65262544	65262544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127889.1	-1	reviewed	p.A157T	0.990	80	0%	53	15.1%	-	-	benign(0.003)	tolerated(0.47)	neutral(0.011)	superfamily_SSF53474
OSTBETA	123264	genome.wustl.edu	37	15	65343889	65343889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178859.3	+1	validated	p.A45V	0.000	167	0%	201	38.3%	-	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
CILP	8483	genome.wustl.edu	37	15	65490022	65490022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003613.3	-1	reviewed	p.R868W	0.006	104	0%	95	30.5%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
CILP	8483	genome.wustl.edu	37	15	65490345	65490345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003613.3	-1	reviewed	p.R760Q	1.000	65	1.5%	84	40.5%	-	-	probably_damaging(0.998)	tolerated(0.62)	deleterious(0.478)	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65627138	65627138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004884.3	-1	validated	p.V251M	1.000	22	0%	48	41.7%	-	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PTPLAD1	51495	genome.wustl.edu	37	15	65868686	65868686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016395.2	+1	validated	p.R353H	1.000	72	0%	33	48.5%	-	-	unknown(0)	tolerated(0.27)	-	HMMPfam_PTPLA
DENND4A	10260	genome.wustl.edu	37	15	65964167	65964167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144823.1	-1	validated	p.A1475V	0.970	153	0%	59	15.3%	-	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
DENND4A	10260	genome.wustl.edu	37	15	65988809	65988809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144823.1	-1	validated	p.S992R	1.000	177	0%	38	39.5%	-	-	benign(0.347)	tolerated(0.15)	neutral(0.351)	NULL
DENND4A	10260	genome.wustl.edu	37	15	66007865	66007865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144823.1	-1	validated	p.V635A	1.000	136	0%	50	28%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MEGF11	84465	genome.wustl.edu	37	15	66273204	66273204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032445.2	-1	validated	p.G225V	1.000	7	0.000	19	0.263	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00180,superfamily_EGF/Laminin
DIS3L	115752	genome.wustl.edu	37	15	66599165	66599165	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133375.3	+1	validated	p.Q16	1.000	105	0%	67	37.3%	-	-	-	-	-	NULL
LCTL	197021	genome.wustl.edu	37	15	66857622	66857622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207338.2	-1	validated	p.E28*	0.986	20	0%	50	28%	-	-	-	-	-	NULL
MAP2K5	5607	genome.wustl.edu	37	15	67855620	67855620	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145160.1	+1	reviewed	e3-1	1.000	211	0%	116	36.2%	-	-	-	-	-	-
MAP2K5	5607	genome.wustl.edu	37	15	67893070	67893070	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145160.1	+1	reviewed	p.N176	0.993	177	0%	58	27.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SKOR1	390598	genome.wustl.edu	37	15	68118364	68118364	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031807.1	+1	provisional	p.Y57*	0.998	27	0%	41	51.2%	-	-	-	-	-	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind
SKOR1	390598	genome.wustl.edu	37	15	68123211	68123211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031807.1	+1	provisional	p.I813	0.968	263	0%	396	32.1%	-	-	-	-	-	NULL
PIAS1	8554	genome.wustl.edu	37	15	68475967	68475967	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016166.1	+1	reviewed	e13-1	1.000	47	0%	17	29.4%	-	-	-	-	-	-
ITGA11	22801	genome.wustl.edu	37	15	68642968	68642968	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004439.1	-1	reviewed	p.I349	1.000	123	0%	102	29.4%	-	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ENSG00000245371	0	genome.wustl.edu	37	15	69689538	69689538	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000500759	-1	known	NULL	0.000	13	0%	16	37.5%	-	-	-	-	-	-
KIF23	9493	genome.wustl.edu	37	15	69714463	69714463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138555.1	+1	reviewed	p.R150Q	1.000	117	0%	97	30.9%	-	-	possibly_damaging(0.921)	tolerated(0.08)	deleterious(0.671)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
UACA	55075	genome.wustl.edu	37	15	70959098	70959098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018003.2	-1	validated	p.E1309*	1.000	180	0%	69	31.9%	-	-	-	-	-	NULL
UACA	55075	genome.wustl.edu	37	15	70960379	70960379	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018003.2	-1	validated	p.E882*	0.989	155	0%	66	31.8%	-	-	-	-	-	NULL
LARP6	55323	genome.wustl.edu	37	15	71124472	71124472	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018357.2	-1	validated	p.P465	0.692	56	0%	62	37.1%	-	-	-	-	-	NULL
LARP6	55323	genome.wustl.edu	37	15	71125078	71125078	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018357.2	-1	validated	p.F263	0.934	125	0%	138	41.3%	-	-	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	71952943	71952943	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024817.2	+1	provisional	p.T409	0.283	97	0%	41	31.7%	-	-	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	71952961	71952961	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024817.2	+1	provisional	p.S415	0.006	87	0%	49	34.7%	-	-	-	-	-	HMMPfam_ADAM_spacer1
GRAMD2	196996	genome.wustl.edu	37	15	72455997	72455997	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012642.2	-1	validated	p.D234	1.000	131	0%	117	36.8%	-	-	-	-	-	NULL
TMEM202	338949	genome.wustl.edu	37	15	72700113	72700113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080462.1	+1	provisional	p.S234*	0.210	111	0%	56	35.7%	-	-	-	-	-	NULL
ADPGK	83440	genome.wustl.edu	37	15	73067308	73067308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031284.4	-1	validated	p.F122L	1.000	106	0%	63	41.3%	-	-	possibly_damaging(0.872)	tolerated(0.13)	deleterious(0.592)	HMMPfam_ADP_PFK_GK,superfamily_SSF53613
HCN4	10021	genome.wustl.edu	37	15	73635795	73635795	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005477.2	-1	reviewed	p.T380	0.998	116	0%	95	38.9%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
PML	5371	genome.wustl.edu	37	15	74326863	74326863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033238.2	+1	reviewed	p.E568K	0.098	44	0%	78	10.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
STRA6	64220	genome.wustl.edu	37	15	74473698	74473698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142617.1	-1	reviewed	p.A541V	0.021	40	0%	65	33.8%	-	-	benign(0.041)	tolerated(1)	neutral(0.003)	NULL
STRA6	64220	genome.wustl.edu	37	15	74476212	74476212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142617.1	-1	reviewed	p.A429S	1.000	107	0%	115	42.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
STRA6	64220	genome.wustl.edu	37	15	74487706	74487706	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142617.1	-1	reviewed	p.T178	0.107	18	0%	38	44.7%	-	-	-	-	-	NULL
CCDC33	80125	genome.wustl.edu	37	15	74560740	74560740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025055.3	+1	validated	p.V163I	0.001	37	0%	57	10.5%	-	-	possibly_damaging(0.888)	tolerated(0.17)	neutral(0.406)	NULL
CYP11A1	1583	genome.wustl.edu	37	15	74631644	74631644	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000781.2	-1	reviewed	p.I390	0.997	73	0%	88	44.3%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP11A1	1583	genome.wustl.edu	37	15	74635409	74635409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000781.2	-1	reviewed	p.G300V	0.999	63	0%	72	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
SEMA7A	8482	genome.wustl.edu	37	15	74709056	74709056	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003612.3	-1	reviewed	e7-1	1.000	258	0%	381	38.6%	-	-	-	-	-	-
ARID3B	10620	genome.wustl.edu	37	15	74882179	74882179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006465.2	+1	reviewed	p.I239T	1.000	89	0%	96	38.5%	-	-	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
CYP1A1	1543	genome.wustl.edu	37	15	75014698	75014698	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000268062	-1	known	e2-1	0.126	153	0%	154	9.7%	-	-	-	-	-	-
CYP1A1	1543	genome.wustl.edu	37	15	75014767	75014767	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000499.3	-1	reviewed	p.F224	0.934	104	0%	118	38.1%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CPLX3	594855	genome.wustl.edu	37	15	75119188	75119188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001030005.2	+1	validated	p.Q48H	1.000	60	0%	148	33.1%	-	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
CPLX3	594855	genome.wustl.edu	37	15	75122501	75122501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001030005.2	+1	validated	p.A95T	1.000	55	0%	124	45.2%	-	-	benign(0.058)	deleterious(0.02)	neutral(0.387)	NULL
SCAMP2	10066	genome.wustl.edu	37	15	75146958	75146958	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005697.3	-1	reviewed	p.P30	0.001	68	0%	126	39.7%	-	-	-	-	-	NULL
SCAMP5	192683	genome.wustl.edu	37	15	75310802	75310802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138967.3	+1	validated	p.S147P	0.968	123	0%	149	25.5%	-	-	possibly_damaging(0.836)	tolerated(0.06)	deleterious(0.642)	HMMPfam_SCAMP
C15orf39	56905	genome.wustl.edu	37	15	75500555	75500555	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015492.4	+1	validated	p.A722	0.000	49	0%	90	41.1%	-	-	-	-	-	NULL
C15orf39	56905	genome.wustl.edu	37	15	75501157	75501157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015492.4	+1	validated	p.R923H	1.000	8	0.000	20	0.250	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MAN2C1	4123	genome.wustl.edu	37	15	75648663	75648663	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006715.2	-1	validated	p.V955	0.040	17	0%	49	40.8%	-	-	-	-	-	HMMPfam_Glyco_hydro_38C
SIN3A	25942	genome.wustl.edu	37	15	75664541	75664541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145357.1	-1	reviewed	p.R1201C	1.000	105	0%	137	14.6%	-	-	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
SNUPN	10073	genome.wustl.edu	37	15	75913313	75913313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042581.1	-1	reviewed	p.R27H	1.000	91	0%	113	31.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CSPG4	1464	genome.wustl.edu	37	15	75974771	75974771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001897.4	-1	reviewed	p.L1605I	1.000	26	0%	47	48.9%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
CSPG4	1464	genome.wustl.edu	37	15	75981759	75981759	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001897.4	-1	reviewed	p.V549	0.508	12	0%	30	46.7%	-	-	-	-	-	NULL
NRG4	145957	genome.wustl.edu	37	15	76301562	76301562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138573.3	-1	validated	p.T28I	1.000	106	0%	39	48.7%	-	-	benign(0.304)	deleterious(0)	deleterious(0.539)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
SCAPER	49855	genome.wustl.edu	37	15	77064234	77064234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020843.2	-1	validated	p.R365Q	0.000	123	0%	43	32.6%	-	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
PSTPIP1	9051	genome.wustl.edu	37	15	77328160	77328160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003978.3	+1	reviewed	p.T335A	0.018	13	0%	42	42.9%	-	-	benign(0)	tolerated(0.94)	-	NULL
SGK269	79834	genome.wustl.edu	37	15	77425402	77425402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024776.2	-1	validated	p.A1341V	1.000	60	0%	14	57.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LINGO1	84894	genome.wustl.edu	37	15	77906745	77906745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032808.5	-1	validated	p.A502T	1.000	51	0%	113	41.6%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LINGO1	84894	genome.wustl.edu	37	15	77907237	77907237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032808.5	-1	validated	p.R338C	1.000	107	0%	143	34.3%	-	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
IREB2	3658	genome.wustl.edu	37	15	78732162	78732162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004136.2	+1	validated	p.E15D	1.000	142	0%	175	41.7%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
IREB2	3658	genome.wustl.edu	37	15	78755408	78755408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004136.2	+1	validated	p.R84H	1.000	309	0%	137	30.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Aconitase iron-sulfur domain
IREB2	3658	genome.wustl.edu	37	15	78782837	78782837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004136.2	+1	validated	p.Y717C	0.996	191	0%	101	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Aconitase
CHRNA5	1138	genome.wustl.edu	37	15	78878990	78878990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000745.2	+1	provisional	p.E88K	1.000	89	1.1%	35	40%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNA5	1138	genome.wustl.edu	37	15	78882364	78882364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000745.2	+1	provisional	p.D211Y	1.000	220	0.5%	91	30.8%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNB4	1143	genome.wustl.edu	37	15	78927919	78927919	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000750.3	-1	validated	p.R22	0.007	202	0%	298	33.6%	-	-	-	-	-	NULL
FAH	2184	genome.wustl.edu	37	15	80452102	80452102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000137.1	+1	reviewed	p.T66I	0.032	126	0%	125	41.6%	-	-	benign(0.065)	deleterious(0.02)	neutral(0.388)	HMMPfam_DUF1969,superfamily_Fumarylacetoacetate hydrolase FAH N-terminal domain
ARNT2	9915	genome.wustl.edu	37	15	80845057	80845057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014862.3	+1	reviewed	p.D344G	0.999	107	0%	60	31.7%	-	-	benign(0.362)	deleterious(0.02)	deleterious(0.498)	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
KIAA1199	57214	genome.wustl.edu	37	15	81172169	81172169	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018689.1	+1	validated	p.G118	0.946	60	0%	44	45.5%	-	-	-	-	-	HMMPfam_G8
IL16	3603	genome.wustl.edu	37	15	81575014	81575014	+	Silent	SNP	C	C	T	rs143808111	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172217.3	+1	reviewed	p.S372	0.345	39	0%	61	44.3%	-	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
HOMER2	9455	genome.wustl.edu	37	15	83527863	83527863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199330.1	-1	reviewed	p.D149N	0.999	133	0%	109	39.4%	-	-	possibly_damaging(0.796)	deleterious(0.03)	deleterious(0.663)	NULL
TM6SF1	53346	genome.wustl.edu	37	15	83788426	83788426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023003.3	+1	validated	p.A131T	0.999	301	0%	163	10.4%	-	-	benign(0.009)	tolerated(0.7)	neutral(0.003)	NULL
TM6SF1	53346	genome.wustl.edu	37	15	83793458	83793458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023003.3	+1	validated	p.R213I	1.000	183	0%	78	33.3%	-	-	possibly_damaging(0.765)	tolerated(0.31)	neutral(0.311)	NULL
ZSCAN2	54993	genome.wustl.edu	37	15	85164393	85164393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181877.3	+1	reviewed	p.A323T	0.026	89	0%	73	45.2%	-	-	probably_damaging(0.972)	tolerated(0.62)	neutral(0.418)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN2	54993	genome.wustl.edu	37	15	85165037	85165037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181877.3	+1	reviewed	p.K537N	0.998	72	0%	73	34.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NMB	4828	genome.wustl.edu	37	15	85198578	85198578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205858.1	-1	validated	p.R130C	0.000	133	0%	203	39.4%	-	-	probably_damaging(0.99)	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85405949	85405949	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020778.4	+1	validated	p.R1607*	1.000	92	0%	116	34.5%	-	-	-	-	-	HMMPfam_Alpha_kinase,superfamily_Protein kinase-like (PK-like)
AKAP13	11214	genome.wustl.edu	37	15	86122209	86122209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006738.4	+1	reviewed	p.A304T	0.970	84	0%	35	31.4%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
AGBL1	123624	genome.wustl.edu	37	15	86814938	86814938	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152336.2	+1	validated	e13+1	1.000	195	0%	69	39.1%	-	-	-	-	-	-
DET1	55070	genome.wustl.edu	37	15	89074317	89074317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017996.3	-1	validated	p.R218H	0.997	92	0%	50	42%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Det1
DET1	55070	genome.wustl.edu	37	15	89074662	89074662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017996.3	-1	validated	p.A103V	1.000	69	0%	56	26.8%	-	-	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	NULL
ACAN	176	genome.wustl.edu	37	15	89390595	89390595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013227.3	+1	reviewed	p.Y517	0.928	18	0%	28	39.3%	-	-	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
ACAN	176	genome.wustl.edu	37	15	89415280	89415280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013227.3	+1	reviewed	p.I2269	0.983	72	0%	91	27.5%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
MFGE8	4240	genome.wustl.edu	37	15	89449890	89449890	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005928.2	-1	validated	p.F169	0.732	57	0%	95	27.4%	-	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
ABHD2	11057	genome.wustl.edu	37	15	89719209	89719209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007011.7	+1	reviewed	p.Q235H	1.000	86	0%	58	25.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
KIF7	374654	genome.wustl.edu	37	15	90191929	90191929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198525.2	-1	validated	p.D334N	1.000	25	0%	41	26.8%	-	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
ANPEP	290	genome.wustl.edu	37	15	90342718	90342718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001150.2	-1	reviewed	p.R631Q	0.946	144	0%	193	33.2%	-	-	benign(0.016)	tolerated(0.14)	neutral(0.250)	NULL
C15orf38	348110	genome.wustl.edu	37	15	90447199	90447199	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182616.2	-1	validated	p.G106	0.796	41	0%	53	43.4%	-	-	-	-	-	HMMPfam_UPF0552
TTLL13	440307	genome.wustl.edu	37	15	90801325	90801325	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029964.2	+1	validated	p.L331	1.000	155	0%	188	44.1%	-	-	-	-	-	HMMPfam_TTL,superfamily_SSF56059
ZNF774	342132	genome.wustl.edu	37	15	90904269	90904269	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004309.2	+1	validated	p.P402	0.955	85	0%	82	42.7%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
IQGAP1	8826	genome.wustl.edu	37	15	91030268	91030268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003870.3	+1	reviewed	p.F1369	1.000	79	0%	60	36.7%	-	-	-	-	-	NULL
BLM	641	genome.wustl.edu	37	15	91346818	91346818	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000057.2	+1	reviewed	p.A1142	0.057	131	0.8%	46	41.3%	-	-	-	-	-	HMMPfam_RQC,superfamily_SSF52540
FURIN	5045	genome.wustl.edu	37	15	91423440	91423440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002569.2	+1	reviewed	p.R498H	1.000	20	0%	34	17.6%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_P_proprotein,superfamily_Gal_bind_like
FES	2242	genome.wustl.edu	37	15	91433107	91433107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002005.3	+1	reviewed	p.E322K	0.002	43	0%	67	35.8%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
FES	2242	genome.wustl.edu	37	15	91435992	91435992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002005.3	+1	reviewed	p.A588V	1.000	41	0%	93	32.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
FES	2242	genome.wustl.edu	37	15	91437169	91437169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002005.3	+1	reviewed	p.R736H	1.000	36	0%	52	38.5%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MAN2A2	4122	genome.wustl.edu	37	15	91456603	91456603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000431652	+1	known	p.R895K	0.991	88	0%	141	32.6%	-	-	-	-	-	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C
UNC45A	55898	genome.wustl.edu	37	15	91492922	91492922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018671.3	+1	validated	p.G682D	1.000	59	0%	116	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRC1	9055	genome.wustl.edu	37	15	91519938	91519938	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003981.2	-1	reviewed	p.Q391*	1.000	263	0%	290	34.1%	-	-	-	-	-	HMMPfam_MAP65_ASE1
VPS33B	26276	genome.wustl.edu	37	15	91548963	91548963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018668.3	-1	reviewed	p.L331I	1.000	23	0%	24	37.5%	-	-	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SLCO3A1	28232	genome.wustl.edu	37	15	92706356	92706356	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013272.3	+1	validated	p.S708	0.961	64	0%	36	27.8%	-	-	-	-	-	NULL
ST8SIA2	8128	genome.wustl.edu	37	15	92987984	92987984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006011.3	+1	reviewed	p.R223W	0.998	34	0%	38	23.7%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Glyco_transf_29
CHD2	1106	genome.wustl.edu	37	15	93522378	93522378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001271.3	+1	reviewed	p.R914H	1.000	133	0%	40	52.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MCTP2	55784	genome.wustl.edu	37	15	95022227	95022227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018349.3	+1	validated	p.S867	1.000	57	0%	16	62.5%	-	-	-	-	-	NULL
NR2F2	7026	genome.wustl.edu	37	15	96880615	96880615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021005.3	+1	reviewed	p.L337V	1.000	75	0%	104	43.3%	-	-	benign(0.104)	tolerated(0.14)	neutral(0.258)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PGPEP1L	145814	genome.wustl.edu	37	15	99512682	99512682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102612.2	-1	validated	p.D115N	0.065	43	2.3%	55	30.9%	-	-	benign(0.004)	tolerated(0.46)	neutral(0.012)	superfamily_Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
TTC23	64927	genome.wustl.edu	37	15	99758900	99758900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040655.1	-1	validated	p.E158D	0.740	284	0%	142	35.2%	-	-	benign(0.059)	tolerated(0.59)	neutral(0.009)	HMMSmart_SM00028,superfamily_TPR-like
TTC23	64927	genome.wustl.edu	37	15	99758907	99758907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040655.1	-1	validated	p.A156V	0.981	267	0%	142	37.3%	-	-	possibly_damaging(0.761)	deleterious(0)	deleterious(0.726)	HMMSmart_SM00028,superfamily_TPR-like
HSP90B2P	7190	genome.wustl.edu	37	15	99799059	99799059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378906	+1	known	p.R71C	0.998	75	0%	62	12.9%	-	-	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
LRRC28	123355	genome.wustl.edu	37	15	99828111	99828111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144598.2	+1	provisional	p.R114C	1.000	193	0%	188	33%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
MEF2A	4205	genome.wustl.edu	37	15	100230480	100230480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005587.2	+1	reviewed	p.N237K	1.000	56	0%	37	54.1%	-	-	benign(0.062)	deleterious(0)	neutral(0.449)	NULL
LYSMD4	145748	genome.wustl.edu	37	15	100269337	100269337	+	Silent	SNP	C	C	T	rs78996435		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152449.2	-1	validated	p.A295	0.002	63	0%	62	24.2%	-	-	-	-	-	NULL
CERS3	204219	genome.wustl.edu	37	15	101031087	101031087	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178842.3	-1	validated	p.R75*	0.005	144	0%	69	34.8%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CERS3	204219	genome.wustl.edu	37	15	101031117	101031117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178842.3	-1	validated	p.A65T	1.000	117	0%	58	29.3%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ASB7	140460	genome.wustl.edu	37	15	101188602	101188602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198243.2	+1	reviewed	p.L298F	1.000	145	0%	79	34.2%	-	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_Ankyrin repeat
LUC7L	55692	genome.wustl.edu	37	16	258104	258104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201412.1	-1	validated	p.E113D	1.000	154	0%	141	36.2%	-	-	benign(0.086)	deleterious(0.04)	neutral(0.355)	HMMPfam_LUC7
ITFG3	83986	genome.wustl.edu	37	16	314618	314618	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000424016	+1	known	p.P90L	0.000	26	0%	45	26.7%	-	-	-	-	-	NULL
PDIA2	64714	genome.wustl.edu	37	16	334476	334476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006849.2	+1	validated	p.L97M	0.953	32	0%	99	44.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
TMEM8A	58986	genome.wustl.edu	37	16	426799	426799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021259.2	-1	validated	p.D217N	0.001	15	0%	31	29%	-	-	benign(0.004)	tolerated(0.26)	neutral(0.034)	NULL
DECR2	26063	genome.wustl.edu	37	16	460975	460975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020664.3	+1	validated	p.A187V	1.000	31	0%	83	33.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
RAB11FIP3	9727	genome.wustl.edu	37	16	521368	521368	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014700.3	+1	validated	p.F294	0.932	74	0%	145	35.9%	-	-	-	-	-	NULL
C16orf11	146325	genome.wustl.edu	37	16	613378	613378	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145270.1	+1	predicted	p.P28	0.014	46	0%	94	18.1%	-	-	-	-	-	NULL
C16orf11	146325	genome.wustl.edu	37	16	615096	615096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145270.1	+1	predicted	p.G502D	0.003	6	0.000	11	0.455	-	-	benign(0.01)	tolerated(0.15)	neutral(0.241)	NULL
PIGQ	9091	genome.wustl.edu	37	16	633429	633429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148920.1	+1	reviewed	p.G693D	0.000	15	0%	47	34%	-	-	unknown(0)	-	-	NULL
RAB40C	57799	genome.wustl.edu	37	16	675504	675504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021168.4	+1	validated	p.D113N	1.000	34	0%	77	37.7%	-	-	benign(0.016)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR90	197335	genome.wustl.edu	37	16	711941	711941	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145294.4	+1	provisional	p.S1305	0.000	14	0%	61	34.4%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
RHOT2	89941	genome.wustl.edu	37	16	722748	722748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138769.1	+1	provisional	p.A484T	0.079	49	0%	115	33.9%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
JMJD8	339123	genome.wustl.edu	37	16	733166	733166	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005920.2	-1	validated	e7+1	1.000	78	0%	121	38.8%	-	-	-	-	-	-
WDR24	84219	genome.wustl.edu	37	16	739529	739529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032259.2	-1	provisional	p.A38T	1.000	22	0%	52	48.1%	-	-	benign(0.19)	tolerated(0.37)	neutral(0.037)	superfamily_WD40 repeat-like
MSLN	10232	genome.wustl.edu	37	16	817435	817435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013404.4	+1	reviewed	p.A529S	0.049	49	0%	127	35.4%	-	-	probably_damaging(0.959)	tolerated(0.7)	neutral(0.405)	HMMPfam_Mesothelin
MSLNL	401827	genome.wustl.edu	37	16	820111	820111	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025190.1	-1	provisional	p.G958	0.001	20	0%	46	28.3%	-	-	-	-	-	HMMPfam_Mesothelin
CHTF18	63922	genome.wustl.edu	37	16	845217	845217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022092.2	+1	validated	p.D679G	0.029	21	0%	56	16.1%	-	-	benign(0.428)	tolerated(0.34)	neutral(0.162)	NULL
PRR25	388199	genome.wustl.edu	37	16	863313	863313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013638.1	+1	provisional	p.D221N	0.017	10	0%	34	35.3%	-	-	unknown(0)	-	-	NULL
LMF1	64788	genome.wustl.edu	37	16	920852	920852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022773.2	-1	reviewed	p.S370L	0.015	31	0%	68	39.7%	-	-	possibly_damaging(0.455)	tolerated(0.68)	neutral(0.151)	HMMPfam_DUF1222
LMF1	64788	genome.wustl.edu	37	16	1004555	1004555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022773.2	-1	reviewed	p.T102M	0.000	38	0%	73	37%	-	-	possibly_damaging(0.693)	tolerated(0.12)	deleterious(0.508)	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1251663	1251663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021098.2	+1	reviewed	p.V405M	1.000	36	0%	85	37.6%	-	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BAIAP3	8938	genome.wustl.edu	37	16	1397935	1397935	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003933.3	+1	reviewed	p.P1057	0.628	13	0%	23	52.2%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLCN7	1186	genome.wustl.edu	37	16	1497502	1497502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001287.4	-1	reviewed	p.A714V	1.000	14	0%	31	35.5%	-	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_CBS
TELO2	9894	genome.wustl.edu	37	16	1547054	1547054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016111.3	+1	reviewed	p.V211M	0.791	102	0%	168	41.1%	-	-	possibly_damaging(0.89)	tolerated(0.18)	neutral(0.406)	NULL
TMEM204	79652	genome.wustl.edu	37	16	1592032	1592032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024600.4	+1	provisional	p.A131T	0.472	6	0.000	27	0.333	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
CRAMP1L	57585	genome.wustl.edu	37	16	1670667	1670667	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436138	+1	known	p.W125*	0.008	25	0%	22	31.8%	-	-	-	-	-	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1817300	1817300	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015133.3	+1	reviewed	e26+2	0.962	31	0%	78	39.7%	-	-	-	-	-	-
MAPK8IP3	23162	genome.wustl.edu	37	16	1817615	1817615	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015133.3	+1	reviewed	p.A1095	0.935	6	0.000	17	0.529	-	-	-	-	-	superfamily_WD40 repeat-like
FAHD1	81889	genome.wustl.edu	37	16	1877658	1877658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018104.2	+1	validated	p.P143H	1.000	43	0%	73	39.7%	-	-	possibly_damaging(0.89)	deleterious(0.01)	deleterious(0.756)	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
TBL3	10607	genome.wustl.edu	37	16	2028439	2028439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006453.2	+1	reviewed	p.R754W	0.022	8	0.000	32	0.406	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMPfam_Utp13
NOXO1	124056	genome.wustl.edu	37	16	2030445	2030445	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172168.1	-1	provisional	p.R113	0.000	12	0%	34	38.2%	-	-	-	-	-	superfamily_PX domain
GFER	2671	genome.wustl.edu	37	16	2035969	2035969	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005262.2	+1	reviewed	p.F186	0.978	39	0%	59	33.9%	-	-	-	-	-	HMMPfam_Evr1_Alr,superfamily_Evr1_Alr
ZNF598	90850	genome.wustl.edu	37	16	2048747	2048747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000431526	-1	known	p.A773T	1.000	33	0%	61	32.8%	-	-	probably_damaging(0.953)	tolerated(0.62)	neutral(0.401)	NULL
TSC2	7249	genome.wustl.edu	37	16	2121535	2121535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000548.3	+1	reviewed	p.R622W	1.000	55	0%	77	29.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat,HMMPfam_Tuberin
TSC2	7249	genome.wustl.edu	37	16	2138110	2138110	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000548.3	+1	reviewed	p.F1710	0.878	48	0%	84	39.3%	-	-	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
PKD1	5310	genome.wustl.edu	37	16	2158838	2158838	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009944.2	-1	reviewed	p.A2110	0.000	7	0.000	11	0.455	-	-	-	-	-	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain
RAB26	25837	genome.wustl.edu	37	16	2200015	2200015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014353.4	+1	validated	p.A90V	0.995	212	0.5%	444	12.4%	-	-	benign(0.342)	tolerated(0.12)	neutral(0.368)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLST8	64223	genome.wustl.edu	37	16	2258495	2258495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022372.3	+1	validated	p.R248M	1.000	28	0%	39	25.6%	-	-	probably_damaging(0.968)	deleterious(0.04)	deleterious(0.759)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
E4F1	1877	genome.wustl.edu	37	16	2282838	2282838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004424.3	+1	reviewed	p.T271I	1.000	52	0%	116	33.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers
LOC100287438	100287438	genome.wustl.edu	37	16	2285069	2285069	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343409.1	-1	model	p.G166	0.000	9	0.000	28	0.357	-	-	-	-	-	NULL
E4F1	1877	genome.wustl.edu	37	16	2285132	2285132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004424.3	+1	reviewed	p.G662	0.195	17	0%	20	45%	-	-	-	-	-	NULL
ABCA3	21	genome.wustl.edu	37	16	2326768	2326768	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001089.2	-1	reviewed	p.G1674	0.000	39	0%	96	10.4%	-	-	-	-	-	NULL
TBC1D24	57465	genome.wustl.edu	37	16	2550317	2550317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020705.1	+1	provisional	p.E445K	0.998	20	0%	58	46.6%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_TLD,HMMSmart_TLDc
TCEB2	6923	genome.wustl.edu	37	16	2822013	2822013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207013.1	-1	reviewed	p.A112V	1.000	106	0%	207	37.7%	-	-	benign(0.206)	deleterious(0.02)	neutral(0.403)	NULL
PRSS21	10942	genome.wustl.edu	37	16	2871417	2871417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006799.2	+1	reviewed	p.Q252H	0.582	79	0%	100	30%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FLYWCH2	114984	genome.wustl.edu	37	16	2946577	2946577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142499.1	+1	validated	p.V43I	1.000	44	0%	68	30.9%	-	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	NULL
FLYWCH1	84256	genome.wustl.edu	37	16	2983208	2983208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032296.2	+1	validated	p.R291W	1.000	53	0%	73	42.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_FLYWCH
THOC6	79228	genome.wustl.edu	37	16	3076519	3076519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024339.3	+1	validated	p.E138D	1.000	175	0.6%	310	36.8%	-	-	benign(0.001)	tolerated(0.95)	-	superfamily_WD40 repeat-like
ZSCAN10	84891	genome.wustl.edu	37	16	3139768	3139768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032805.1	-1	provisional	p.G501V	1.000	9	0.000	10	0.400	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF205	7755	genome.wustl.edu	37	16	3169795	3169795	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042428.1	+1	validated	p.T378	0.004	83	0%	117	33.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF75A	7627	genome.wustl.edu	37	16	3367520	3367520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153028.2	+1	validated	p.R181I	1.000	160	0%	100	41%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR2C1	4993	genome.wustl.edu	37	16	3406340	3406340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012368.2	+1	validated	p.A134T	0.008	43	0%	39	30.8%	-	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C16orf90	646174	genome.wustl.edu	37	16	3543870	3543870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080524.1	-1	predicted	p.R173I	1.000	50	0%	81	34.6%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
NLRC3	197358	genome.wustl.edu	37	16	3594330	3594330	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178844.2	-1	validated	e13-1	1.000	38	0%	58	34.5%	-	-	-	-	-	-
NLRC3	197358	genome.wustl.edu	37	16	3613193	3613193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178844.2	-1	validated	p.S582I	0.013	4	0.000	13	0.308	-	-	benign(0.309)	tolerated(0.08)	neutral(0.396)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3778624	3778624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004380.2	-1	reviewed	p.L2142M	0.994	66	0%	127	32.3%	-	-	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3781464	3781464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004380.2	-1	reviewed	p.V1634A	1.000	17	0%	32	25%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ADCY9	115	genome.wustl.edu	37	16	4039045	4039045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001116.2	-1	reviewed	p.F754V	1.000	122	0%	159	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CORO7	79585	genome.wustl.edu	37	16	4410535	4410535	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024535.3	-1	validated	p.A644	0.998	25	0%	62	12.9%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CORO7	79585	genome.wustl.edu	37	16	4414870	4414870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024535.3	-1	validated	p.R317Q	1.000	18	0%	26	30.8%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_DUF1900
CORO7	79585	genome.wustl.edu	37	16	4458242	4458242	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024535.3	-1	validated	p.T81	0.607	76	0%	155	40.6%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DNAJA3	9093	genome.wustl.edu	37	16	4493148	4493148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005147.4	+1	validated	p.M305R	0.992	71	1.4%	62	24.2%	-	-	benign(0.059)	deleterious(0.03)	neutral(0.368)	NULL
HMOX2	3163	genome.wustl.edu	37	16	4555562	4555562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127204.1	+1	reviewed	p.E13K	0.933	173	0%	143	33.6%	-	-	possibly_damaging(0.811)	deleterious(0.04)	deleterious(0.654)	NULL
LOC342346	342346	genome.wustl.edu	37	16	4626398	4626398	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145011.1	+1	predicted	p.G639	0.000	18	0%	43	37.2%	-	-	-	-	-	NULL
LOC342346	342346	genome.wustl.edu	37	16	4644789	4644789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145011.1	+1	predicted	p.A1038T	0.000	12	0%	39	33.3%	-	-	possibly_damaging(0.662)	tolerated(0.14)	deleterious(0.484)	NULL
ANKS3	124401	genome.wustl.edu	37	16	4749065	4749065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133450.2	-1	provisional	p.E466V	1.000	73	0%	109	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
C16orf71	146562	genome.wustl.edu	37	16	4787837	4787837	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139170.2	+1	validated	p.R56*	1.000	29	0%	66	40.9%	-	-	-	-	-	NULL
ZNF500	26048	genome.wustl.edu	37	16	4802621	4802621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021646.1	-1	validated	p.R400H	0.368	35	0%	63	44.4%	-	-	possibly_damaging(0.806)	tolerated(0.09)	deleterious(0.600)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF500	26048	genome.wustl.edu	37	16	4815831	4815831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021646.1	-1	validated	p.R50H	0.998	16	0%	33	39.4%	-	-	probably_damaging(0.997)	tolerated(0.31)	deleterious(0.493)	HMMPfam_SCAN,HMMSmart_SCAN
UBN1	29855	genome.wustl.edu	37	16	4910704	4910704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079514.1	+1	validated	p.K237N	1.000	47	0%	51	39.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
UBN1	29855	genome.wustl.edu	37	16	4920912	4920912	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001079514.1	+1	validated	p.E500*	1.000	220	0%	159	33.3%	-	-	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4934943	4934943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002705.4	-1	reviewed	p.Y1238C	1.000	131	0%	205	39.5%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
PPL	5493	genome.wustl.edu	37	16	4940728	4940728	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002705.4	-1	reviewed	e17+1	1.000	10	0%	14	57.1%	-	-	-	-	-	-
PPL	5493	genome.wustl.edu	37	16	4949060	4949060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002705.4	-1	reviewed	p.G277D	1.000	72	0%	149	42.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00150,superfamily_Spectrin repeat
C16orf72	29035	genome.wustl.edu	37	16	9196934	9196934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014117.2	+1	validated	p.R134H	1.000	102	0%	56	16.1%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857666	9857666	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000833.3	-1	reviewed	p.L1245	0.992	158	0%	76	32.9%	-	-	-	-	-	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9984852	9984852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000833.3	-1	reviewed	p.E371D	1.000	102	0%	36	41.7%	-	-	benign(0.418)	tolerated(0.45)	neutral(0.148)	superfamily_Periplasmic binding protein-like I
EMP2	2013	genome.wustl.edu	37	16	10637435	10637435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001424.4	-1	validated	p.S54I	0.000	161	0%	141	42.6%	-	-	possibly_damaging(0.502)	tolerated(0.24)	neutral(0.205)	HMMPfam_PMP22_Claudin
CIITA	4261	genome.wustl.edu	37	16	11001528	11001528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000246.3	+1	reviewed	p.E727K	0.091	38	0%	64	35.9%	-	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
CIITA	4261	genome.wustl.edu	37	16	11001915	11001915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000246.3	+1	reviewed	p.G856S	0.358	8	0.000	19	0.368	-	-	benign(0.054)	tolerated(1)	neutral(0.004)	NULL
CLEC16A	23274	genome.wustl.edu	37	16	11066901	11066901	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015226.2	+1	validated	p.C237	1.000	112	0%	81	38.3%	-	-	-	-	-	NULL
TNFRSF17	608	genome.wustl.edu	37	16	12059199	12059199	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001192.2	+1	reviewed	p.G6	0.886	205	0%	178	31.5%	-	-	-	-	-	NULL
SNX29	92017	genome.wustl.edu	37	16	12155433	12155433	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080530.2	+1	provisional	p.P6	0.259	70	0%	59	47.5%	-	-	-	-	-	NULL
SHISA9	729993	genome.wustl.edu	37	16	13307116	13307116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145204.2	+1	validated	p.S326Y	1.000	164	0%	75	34.7%	-	-	probably_damaging(0.978)	tolerated(0.05)	deleterious(0.766)	NULL
ERCC4	2072	genome.wustl.edu	37	16	14042099	14042099	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005236.2	+1	reviewed	p.D882	0.000	121	0%	57	17.5%	-	-	-	-	-	NULL
NOMO1	23420	genome.wustl.edu	37	16	14966165	14966165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014287.3	+1	reviewed	p.M678T	1.000	561	0.2%	314	12.1%	-	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14969010	14969010	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014287.3	+1	reviewed	p.N724	0.516	417	0%	202	30.7%	-	-	-	-	-	NULL
NTAN1	123803	genome.wustl.edu	37	16	15141313	15141313	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173474.2	-1	provisional	p.H115	0.015	163	0%	147	35.4%	-	-	-	-	-	NULL
LOC100288226	100288226	genome.wustl.edu	37	16	15221658	15221658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343422.1	+1	model	p.G100S	1.000	29	0%	64	18.8%	-	-	unknown(0)	-	-	NULL
C16orf45	89927	genome.wustl.edu	37	16	15675165	15675165	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033201.2	+1	validated	p.D132	0.446	96	0%	80	18.8%	-	-	-	-	-	NULL
ABCC6	368	genome.wustl.edu	37	16	16248834	16248834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001171.5	-1	reviewed	p.L1313M	1.000	13	0%	17	29.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
XYLT1	64131	genome.wustl.edu	37	16	17228535	17228535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022166.3	-1	reviewed	p.I608V	0.762	67	0%	51	33.3%	-	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	NULL
SMG1	23049	genome.wustl.edu	37	16	18908121	18908121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015092.4	-1	reviewed	p.E84K	1.000	33	0%	30	26.7%	-	-	benign(0.013)	deleterious(0.04)	neutral(0.349)	NULL
SYT17	51760	genome.wustl.edu	37	16	19184854	19184854	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016524.2	+1	validated	p.E46*	1.000	41	0%	45	35.6%	-	-	-	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19501839	19501839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105248.1	+1	validated	p.R899Q	0.617	356	0%	170	34.7%	-	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	NULL
CCP110	9738	genome.wustl.edu	37	16	19547973	19547973	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014711.4	+1	validated	p.R328*	0.000	57	0%	24	25%	-	-	-	-	-	NULL
C16orf88	400506	genome.wustl.edu	37	16	19721873	19721873	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012991.2	-1	provisional	p.R341	0.318	121	0%	167	29.9%	-	-	-	-	-	NULL
GPR139	124274	genome.wustl.edu	37	16	20043417	20043417	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002911.2	-1	validated	p.T234	1.000	114	0%	56	30.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GP2	2813	genome.wustl.edu	37	16	20326001	20326001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007240.1	-1	validated	p.M511I	0.000	136	0%	38	36.8%	-	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
PDILT	204474	genome.wustl.edu	37	16	20410441	20410441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174924.1	-1	provisional	p.R61H	1.000	84	0%	63	36.5%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Thiordxn-like_fd
ACSM1	116285	genome.wustl.edu	37	16	20696520	20696520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052956.2	-1	validated	p.R133Q	0.960	124	0%	37	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ERI2	112479	genome.wustl.edu	37	16	20814960	20814960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142725.1	-1	validated	p.A19V	0.003	147	0%	123	30.9%	-	-	benign(0.059)	deleterious(0.03)	neutral(0.368)	NULL
LOC81691	81691	genome.wustl.edu	37	16	20856526	20856526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030941.2	+1	validated	p.R696H	0.000	64	0%	24	20.8%	-	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21008666	21008666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017539.1	-1	provisional	p.I2180	0.011	106	0%	83	34.9%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZP2	7783	genome.wustl.edu	37	16	21211172	21211172	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003460.1	-1	reviewed	p.Q574	0.495	148	0%	77	36.4%	-	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ANKS4B	257629	genome.wustl.edu	37	16	21261743	21261743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145865.2	+1	validated	p.D286Y	0.999	246	0%	137	32.8%	-	-	possibly_damaging(0.791)	tolerated(0.06)	deleterious(0.619)	NULL
METTL9	51108	genome.wustl.edu	37	16	21666658	21666658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016025.3	+1	validated	p.E288K	1.000	162	0.6%	119	32.8%	-	-	possibly_damaging(0.49)	tolerated(0.14)	neutral(0.412)	HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
EEF2K	29904	genome.wustl.edu	37	16	22277722	22277722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013302.3	+1	reviewed	p.E484D	1.000	64	0%	95	41.1%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
POLR3E	55718	genome.wustl.edu	37	16	22335835	22335835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018119.2	+1	validated	p.E380D	1.000	94	0%	187	35.3%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Sin_N
POLR3E	55718	genome.wustl.edu	37	16	22337083	22337083	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018119.2	+1	validated	p.G450	1.000	10	0%	16	43.8%	-	-	-	-	-	NULL
CDR2	1039	genome.wustl.edu	37	16	22358879	22358879	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001802.1	-1	validated	p.R258*	1.000	96	0%	40	35%	-	-	-	-	-	NULL
SCNN1G	6340	genome.wustl.edu	37	16	23221151	23221151	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039.3	+1	reviewed	p.N386	0.000	49	0%	35	22.9%	-	-	-	-	-	HMMPfam_ASC
COG7	91949	genome.wustl.edu	37	16	23421674	23421674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153603.3	-1	reviewed	p.A473T	1.000	85	0%	85	38.8%	-	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_COG7
ENSG00000245868	0	genome.wustl.edu	37	16	23489826	23489826	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000498959	+1	novel	NULL	0.908	48	0%	44	34.1%	-	-	-	-	-	-
GGA2	23062	genome.wustl.edu	37	16	23497377	23497377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015044.4	-1	reviewed	p.R253C	0.531	75	0%	55	23.6%	-	-	possibly_damaging(0.512)	tolerated(0.08)	deleterious(0.472)	HMMPfam_GAT,superfamily_SSF89009
EARS2	124454	genome.wustl.edu	37	16	23535308	23535312	+	RNA	DEL	TCTGT	TCTGT	-	rs3071379	byCluster;byFrequency;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	TCTGT	TCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_003501.1	-1	validated	NULL	0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
EARS2	124454	genome.wustl.edu	37	16	23546501	23546501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083614.1	-1	provisional	p.S222	0.063	37	0%	32	21.9%	-	-	-	-	-	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
EARS2	124454	genome.wustl.edu	37	16	23546671	23546671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083614.1	-1	provisional	p.R166W	1.000	21	0%	17	29.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
PALB2	79728	genome.wustl.edu	37	16	23641147	23641147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024675.3	-1	reviewed	p.F776	0.000	192	0%	163	31.9%	-	-	-	-	-	NULL
ERN2	10595	genome.wustl.edu	37	16	23702490	23702490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033266.3	-1	validated	p.G891E	1.000	92	0%	136	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuc_2-5A
CHP2	63928	genome.wustl.edu	37	16	23767386	23767386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022097.2	+1	provisional	p.S75N	0.998	76	0%	130	39.2%	-	-	benign(0)	tolerated(0.91)	-	superfamily_EF-hand
PRKCB	5579	genome.wustl.edu	37	16	24231289	24231289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_212535.2	+1	reviewed	p.K624R	1.000	172	0%	43	39.5%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_C
CACNG3	10368	genome.wustl.edu	37	16	24366221	24366221	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006539.2	+1	reviewed	p.C121	0.440	52	0%	45	40%	-	-	-	-	-	HMMPfam_PMP22_Claudin
RBBP6	5930	genome.wustl.edu	37	16	24574952	24574952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006910.4	+1	reviewed	p.A496V	0.997	339	0%	155	34.2%	-	-	unknown(0)	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582742	24582742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006910.4	+1	reviewed	p.T1452M	0.889	98	0%	115	32.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582876	24582876	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006910.4	+1	reviewed	p.R1497*	0.999	106	0%	149	32.9%	-	-	-	-	-	NULL
FLJ45256	400511	genome.wustl.edu	37	16	24674473	24674473	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_041134.1	-1	model	NULL	0.000	80	0%	68	30.9%	-	-	-	-	-	-
TNRC6A	27327	genome.wustl.edu	37	16	24808845	24808845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014494.2	+1	reviewed	p.A1199V	0.232	233	0.4%	114	28.9%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24826566	24826566	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014494.2	+1	reviewed	p.G1591*	1.000	146	0%	64	34.4%	-	-	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24828142	24828142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014494.2	+1	reviewed	p.R1613C	1.000	98	0%	60	41.7%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
SLC5A11	115584	genome.wustl.edu	37	16	24918457	24918457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052944.2	+1	provisional	p.R409Q	1.000	74	0%	98	27.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
ARHGAP17	55114	genome.wustl.edu	37	16	24950883	24950883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006634.1	-1	validated	p.R509Q	1.000	31	0%	40	40%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24953387	24953387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006634.1	-1	validated	p.D471N	1.000	98	0%	91	35.2%	-	-	possibly_damaging(0.892)	tolerated(0.08)	deleterious(0.651)	NULL
AQP8	343	genome.wustl.edu	37	16	25228650	25228650	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001169.2	+1	reviewed	p.F48	1.000	135	0%	150	32.7%	-	-	-	-	-	HMMPfam_MIP,superfamily_MIP
ZKSCAN2	342357	genome.wustl.edu	37	16	25251526	25251526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012981.4	-1	validated	p.C839G	0.948	76	0%	34	38.2%	-	-	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NSMCE1	197370	genome.wustl.edu	37	16	27238085	27238085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145080.3	-1	validated	p.D186N	0.883	33	0%	59	13.6%	-	-	possibly_damaging(0.442)	deleterious(0.01)	deleterious(0.550)	superfamily_SSF57850
IL4R	3566	genome.wustl.edu	37	16	27374808	27374808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000418.2	+1	reviewed	p.V712A	0.957	13	0%	29	51.7%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
IL21R	50615	genome.wustl.edu	37	16	27456551	27456551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021798.2	+1	reviewed	p.V247F	0.000	186	0%	170	34.7%	-	-	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27475816	27475816	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001520.3	-1	validated	p.P1899	0.000	29	0%	78	12.8%	-	-	-	-	-	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27480817	27480817	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001520.3	-1	validated	p.D1623	0.892	135	0%	213	34.3%	-	-	-	-	-	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27481615	27481615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001520.3	-1	validated	p.S1543F	0.968	72	0%	110	33.6%	-	-	possibly_damaging(0.915)	deleterious(0.05)	deleterious(0.712)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27544641	27544641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001520.3	-1	validated	p.E274*	0.999	105	0%	95	32.6%	-	-	-	-	-	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27781295	27781295	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015202.2	+1	validated	p.F1363	0.967	62	0%	94	30.9%	-	-	-	-	-	superfamily_Galactose-binding domain-like
APOBR	55911	genome.wustl.edu	37	16	28507327	28507327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018690.2	+1	reviewed	p.A322V	0.003	51	0%	54	13%	-	-	benign(0.355)	tolerated(1)	neutral(0.113)	NULL
APOBR	55911	genome.wustl.edu	37	16	28507653	28507653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018690.2	+1	reviewed	p.L422M	0.000	93	0%	141	11.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
APOBR	55911	genome.wustl.edu	37	16	28509561	28509561	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018690.2	+1	reviewed	p.L1030	0.002	18	0%	18	44.4%	-	-	-	-	-	NULL
IL27	246778	genome.wustl.edu	37	16	28515322	28515322	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145659.3	-1	reviewed	p.W27*	1.000	27	0%	45	35.6%	-	-	-	-	-	NULL
CCDC101	112869	genome.wustl.edu	37	16	28601677	28601677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138414.2	+1	validated	p.D160E	1.000	98	0%	104	13.5%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_DUF1325
ATXN2L	11273	genome.wustl.edu	37	16	28847691	28847691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148414.1	+1	reviewed	p.A1062T	1.000	62	0%	128	41.4%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
SH2B1	25970	genome.wustl.edu	37	16	28877720	28877720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015503.2	+1	reviewed	p.S102L	0.020	44	0%	79	31.6%	-	-	benign(0.046)	tolerated(0.44)	neutral(0.015)	NULL
SH2B1	25970	genome.wustl.edu	37	16	28883544	28883544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015503.2	+1	reviewed	p.G516A	0.977	47	0%	69	33.3%	-	-	benign(0.249)	tolerated(0.4)	neutral(0.041)	superfamily_SH2 domain
LOC100288650	100288650	genome.wustl.edu	37	16	28931072	28931072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343464.1	+1	model	p.I12T	0.000	27	0%	66	42.4%	-	-	-	-	-	NULL
SPNS1	83985	genome.wustl.edu	37	16	28990785	28990785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142448.1	+1	validated	p.A219V	1.000	100	0%	173	13.9%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
C16orf54	283897	genome.wustl.edu	37	16	29756109	29756109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175900.3	-1	validated	p.R55H	0.998	23	0%	46	37%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZG16	653808	genome.wustl.edu	37	16	29791627	29791627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152338.2	+1	validated	p.V131I	0.012	125	0.8%	130	36.9%	-	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	HMMPfam_Jacalin,superfamily_Mannose-bd_lectin
KIF22	3835	genome.wustl.edu	37	16	29808347	29808347	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007317.1	+1	reviewed	p.G68	0.991	51	0%	78	30.8%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
MVP	9961	genome.wustl.edu	37	16	29856194	29856194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005115.3	+1	reviewed	p.A672V	0.976	15	0%	39	38.5%	-	-	possibly_damaging(0.575)	tolerated(0.05)	deleterious(0.542)	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29888751	29888751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201575.2	-1	validated	p.D584N	1.000	8	0.000	12	0.417	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SEZ6L2	26470	genome.wustl.edu	37	16	29891294	29891294	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201575.2	-1	validated	p.T488	0.840	36	0%	64	37.5%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ALDOA	226	genome.wustl.edu	37	16	30081513	30081513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000034.2	+1	reviewed	p.V359I	0.999	34	0%	62	43.5%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Glycolytic,superfamily_SSF51569
PPP4C	5531	genome.wustl.edu	37	16	30087787	30087787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002720.1	+1	provisional	p.A30D	1.000	7	0.000	20	0.450	-	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
TBX6	6911	genome.wustl.edu	37	16	30100073	30100073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004608.3	-1	reviewed	p.A237S	0.993	66	0%	160	36.9%	-	-	benign(0.041)	tolerated(0.26)	neutral(0.037)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
CORO1A	11151	genome.wustl.edu	37	16	30198006	30198006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007074.2	+1	validated	p.V96I	0.980	34	0%	41	26.8%	-	-	benign(0.029)	tolerated(0.23)	neutral(0.043)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CORO1A	11151	genome.wustl.edu	37	16	30198370	30198370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007074.2	+1	validated	p.N154	0.980	127	0%	205	41%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
CORO1A	11151	genome.wustl.edu	37	16	30199132	30199132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007074.2	+1	validated	p.I281	0.074	21	0%	39	38.5%	-	-	-	-	-	superfamily_WD40 repeat-like,HMMPfam_DUF1900
TBC1D10B	26000	genome.wustl.edu	37	16	30376894	30376894	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015527.3	-1	validated	p.D326	0.997	52	0%	71	42.3%	-	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
ITGAL	3683	genome.wustl.edu	37	16	30516598	30516598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002209.2	+1	reviewed	p.S757P	0.001	146	0.7%	143	21%	-	-	probably_damaging(0.985)	tolerated(0.08)	deleterious(0.732)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ZNF689	115509	genome.wustl.edu	37	16	30620848	30620848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138447.1	-1	provisional	p.R106K	0.943	69	0%	131	38.9%	-	-	benign(0.002)	tolerated(1)	-	NULL
PRR14	78994	genome.wustl.edu	37	16	30664243	30664243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024031.2	+1	provisional	p.D108G	0.009	49	0%	104	35.6%	-	-	benign(0.43)	deleterious(0)	deleterious(0.585)	NULL
SRCAP	10847	genome.wustl.edu	37	16	30721342	30721342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006662.2	+1	validated	p.L343M	1.000	74	0%	84	29.8%	-	-	unknown(0)	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30735779	30735779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006662.2	+1	validated	p.T1678	0.508	113	0%	139	46%	-	-	-	-	-	NULL
FBXL19	54620	genome.wustl.edu	37	16	30958404	30958404	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427128	+1	known	p.A538T	1.000	14	0%	34	32.4%	-	-	-	-	-	superfamily_RNI-like
STX1B	112755	genome.wustl.edu	37	16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052874.3	-1	validated	p.R231H	1.000	75	0%	173	10.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
STX4	6810	genome.wustl.edu	37	16	31046355	31046355	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004604.3	+1	provisional	p.K124	1.000	44	0%	119	42%	-	-	-	-	-	HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare
PRSS53	339105	genome.wustl.edu	37	16	31097471	31097471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039503.2	-1	validated	p.P233S	0.999	40	0%	88	36.4%	-	-	benign(0.43)	tolerated(0.09)	neutral(0.436)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PRSS53	339105	genome.wustl.edu	37	16	31098970	31098970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039503.2	-1	validated	p.V44I	0.000	33	0%	84	36.9%	-	-	benign(0.006)	tolerated(0.21)	neutral(0.044)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITGAM	3684	genome.wustl.edu	37	16	31277440	31277440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000632.3	+1	reviewed	p.Q133	0.000	38	0%	38	47.4%	-	-	-	-	-	superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31332864	31332864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000632.3	+1	reviewed	p.D640Y	0.116	276	0.4%	151	33.8%	-	-	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
SLC5A2	6524	genome.wustl.edu	37	16	31498685	31498685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003041.3	+1	reviewed	p.V207I	1.000	19	0%	46	28.3%	-	-	benign(0.022)	tolerated(1)	neutral(0.001)	HMMPfam_SSF
C16orf58	64755	genome.wustl.edu	37	16	31504488	31504488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436843	-1	known	p.R38*	0.000	42	0%	85	36.5%	-	-	-	-	-	NULL
ZNF267	10308	genome.wustl.edu	37	16	31926769	31926769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003414.4	+1	validated	p.R400I	0.958	97	0%	46	45.7%	-	-	benign(0.143)	tolerated(0.48)	neutral(0.023)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF267	10308	genome.wustl.edu	37	16	31926910	31926910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003414.4	+1	validated	p.R447H	0.007	91	0%	51	31.4%	-	-	benign(0.034)	tolerated(0.54)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF267	10308	genome.wustl.edu	37	16	31927125	31927125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003414.4	+1	validated	p.L519I	0.196	66	0%	36	30.6%	-	-	possibly_damaging(0.624)	deleterious(0.01)	deleterious(0.623)	superfamily_C2H2 and C2HC zinc fingers
LOC729264	729264	genome.wustl.edu	37	16	32264772	32264772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001133674.2	+1	model	p.T33I	0.296	122	0%	177	13.6%	-	-	-	-	-	NULL
MYLK3	91807	genome.wustl.edu	37	16	46781736	46781736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182493.2	-1	validated	p.A124T	1.000	15	0%	46	30.4%	-	-	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	NULL
GPT2	84706	genome.wustl.edu	37	16	46934661	46934661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133443.2	+1	validated	p.R134H	1.000	34	0%	66	31.8%	-	-	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
PHKB	5257	genome.wustl.edu	37	16	47695650	47695650	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000293.2	+1	reviewed	p.S739	1.000	126	0%	33	33.3%	-	-	-	-	-	HMMPfam_PHK_AB
ABCC12	94160	genome.wustl.edu	37	16	48138226	48138226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033226.2	-1	reviewed	p.M909I	1.000	121	0%	110	31.8%	-	-	benign(0.123)	tolerated(0.13)	neutral(0.263)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC12	94160	genome.wustl.edu	37	16	48149437	48149437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000416054	-1	known	p.W602*	1.000	75	0%	108	43.5%	-	-	-	-	-	NULL
ABCC12	94160	genome.wustl.edu	37	16	48149469	48149469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033226.2	-1	reviewed	p.A616T	0.996	62	0%	102	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC11	85320	genome.wustl.edu	37	16	48239340	48239340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032583.3	-1	reviewed	p.A597T	0.000	60	0%	45	28.9%	-	-	benign(0.025)	tolerated(0.4)	neutral(0.017)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SIAH1	6477	genome.wustl.edu	37	16	48395770	48395770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006610.1	-1	reviewed	p.M221I	1.000	223	0%	209	13.9%	-	-	benign(0.037)	deleterious(0)	neutral(0.447)	superfamily_Traf_like,HMMPfam_Sina
N4BP1	9683	genome.wustl.edu	37	16	48587552	48587552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153029.3	-1	validated	p.R640C	1.000	123	0%	56	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48594861	48594861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153029.3	-1	validated	p.M565V	0.001	157	0%	60	36.7%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
C16orf78	123970	genome.wustl.edu	37	16	49412503	49412503	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144602.2	+1	predicted	p.S131	0.653	51	0%	22	40.9%	-	-	-	-	-	NULL
PAPD5	64282	genome.wustl.edu	37	16	50256224	50256224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040284.2	+1	validated	p.P125L	1.000	207	0%	91	24.2%	-	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain
ADCY7	113	genome.wustl.edu	37	16	50327356	50327356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114.3	+1	reviewed	p.R260H	0.495	34	0%	78	43.6%	-	-	benign(0.03)	tolerated(0.21)	neutral(0.045)	HMMSmart_CYCc
ADCY7	113	genome.wustl.edu	37	16	50345958	50345958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114.3	+1	reviewed	p.Y820*	1.000	70	0%	80	36.2%	-	-	-	-	-	NULL
NKD1	85407	genome.wustl.edu	37	16	50664155	50664155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033119.3	+1	provisional	p.S174Y	1.000	30	0%	45	42.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NOD2	64127	genome.wustl.edu	37	16	50756617	50756617	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022162.1	+1	reviewed	e8+1	1.000	114	0%	96	32.3%	-	-	-	-	-	-
CYLD	1540	genome.wustl.edu	37	16	50783682	50783682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015247.2	+1	reviewed	p.L25I	1.000	120	0%	77	37.7%	-	-	benign(0.076)	tolerated(0.1)	neutral(0.292)	NULL
SALL1	6299	genome.wustl.edu	37	16	51174771	51174771	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002968.2	-1	reviewed	p.C454	0.954	58	0%	121	16.5%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
SALL1	6299	genome.wustl.edu	37	16	51174820	51174820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002968.2	-1	reviewed	p.A438V	0.950	81	0%	149	36.9%	-	-	benign(0.065)	tolerated(0.37)	neutral(0.024)	NULL
SALL1	6299	genome.wustl.edu	37	16	51175223	51175223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002968.2	-1	reviewed	p.A304T	1.000	85	1.2%	164	31.1%	-	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	NULL
CHD9	80205	genome.wustl.edu	37	16	53191165	53191165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025134.4	+1	validated	p.E388D	0.997	55	0%	22	50%	-	-	benign(0.008)	tolerated(0.46)	neutral(0.012)	NULL
CHD9	80205	genome.wustl.edu	37	16	53307659	53307659	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025134.4	+1	validated	p.D1613E	1.000	52	0%	17	41.2%	-	-	probably_damaging(0.984)	tolerated(0.26)	neutral(0.465)	superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53358438	53358438	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025134.4	+1	validated	p.S2759	0.964	100	0%	24	41.7%	-	-	-	-	-	NULL
AKTIP	64400	genome.wustl.edu	37	16	53529038	53529038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012398.1	-1	reviewed	p.V121I	1.000	140	0%	118	13.6%	-	-	benign(0.416)	tolerated(0.25)	neutral(0.172)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
IRX5	10265	genome.wustl.edu	37	16	54966721	54966721	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005853.5	+1	validated	p.D187	1.000	81	0%	148	33.8%	-	-	-	-	-	NULL
IRX6	79190	genome.wustl.edu	37	16	55360456	55360456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024335.2	+1	validated	p.P85L	1.000	7	0.000	15	0.533	-	-	benign(0.215)	tolerated(0.06)	neutral(0.344)	NULL
MMP2	4313	genome.wustl.edu	37	16	55518003	55518003	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004530.4	+1	reviewed	p.S152	0.997	136	0%	168	38.7%	-	-	-	-	-	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
AMFR	267	genome.wustl.edu	37	16	56397922	56397922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144.4	-1	reviewed	p.E565D	1.000	23	0%	36	36.1%	-	-	probably_damaging(0.983)	tolerated(0.08)	deleterious(0.729)	NULL
AMFR	267	genome.wustl.edu	37	16	56448257	56448257	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144.4	-1	reviewed	e2-1	1.000	110	0%	86	12.8%	-	-	-	-	-	-
BBS2	583	genome.wustl.edu	37	16	56534925	56534925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031885.3	-1	reviewed	p.R413Q	1.000	223	0%	79	41.8%	-	-	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
MT3	4504	genome.wustl.edu	37	16	56624852	56624852	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005954.2	+1	validated	p.C66*	1.000	61	0%	89	42.7%	-	-	-	-	-	HMMPfam_Metallothio,superfamily_Metallothionein_sfam
SLC12A3	6559	genome.wustl.edu	37	16	56926068	56926068	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000339.2	+1	reviewed	p.G814	0.007	52	0%	73	50.7%	-	-	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57100503	57100503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032206.3	+1	validated	p.E1433D	0.059	43	0%	36	33.3%	-	-	benign(0.011)	tolerated(0.84)	neutral(0.001)	NULL
CPNE2	221184	genome.wustl.edu	37	16	57180176	57180176	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152727.4	+1	reviewed	p.T494	0.000	37	0%	33	33.3%	-	-	-	-	-	HMMSmart_VWA,superfamily_SSF53300
RSPRY1	89970	genome.wustl.edu	37	16	57272859	57272859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133368.1	+1	provisional	p.R568K	1.000	88	0%	63	25.4%	-	-	possibly_damaging(0.749)	tolerated(0.05)	deleterious(0.621)	superfamily_RING/U-box
CX3CL1	6376	genome.wustl.edu	37	16	57416521	57416521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002996.3	+1	provisional	p.E257D	0.001	17	0%	31	48.4%	-	-	benign(0.244)	deleterious(0)	deleterious(0.469)	NULL
GPR97	222487	genome.wustl.edu	37	16	57710222	57710222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170776.4	+1	validated	p.D106G	0.991	78	0%	84	39.3%	-	-	possibly_damaging(0.527)	tolerated(0.3)	neutral(0.206)	NULL
CCDC135	84229	genome.wustl.edu	37	16	57760774	57760774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032269.5	+1	validated	p.L669I	0.887	76	0%	116	41.4%	-	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
KIFC3	3801	genome.wustl.edu	37	16	57794638	57794638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005550.3	-1	validated	p.Q744H	1.000	18	0%	26	53.8%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIFC3	3801	genome.wustl.edu	37	16	57805117	57805117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005550.3	-1	validated	p.P253H	0.942	8	0.000	20	0.350	-	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
CNGB1	1258	genome.wustl.edu	37	16	57965683	57965683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001297.4	-1	reviewed	p.P491L	0.000	125	0%	107	34.6%	-	-	benign(0.044)	tolerated(0.27)	neutral(0.036)	NULL
MMP15	4324	genome.wustl.edu	37	16	58077424	58077424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002428.2	+1	reviewed	p.R488H	1.000	57	0%	101	31.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
CSNK2A2	1459	genome.wustl.edu	37	16	58199587	58199587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001896.2	-1	validated	p.F285V	1.000	165	0%	77	40.3%	-	-	possibly_damaging(0.595)	deleterious(0)	deleterious(0.650)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CSNK2A2	1459	genome.wustl.edu	37	16	58208382	58208382	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001896.2	-1	validated	p.I134	1.000	87	0%	43	32.6%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRSS54	221191	genome.wustl.edu	37	16	58318587	58318587	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080492.1	-1	provisional	p.I187	0.948	155	0%	109	13.8%	-	-	-	-	-	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SETD6	79918	genome.wustl.edu	37	16	58550751	58550751	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024860.2	+1	validated	p.E213	0.998	142	0%	234	32.9%	-	-	-	-	-	HMMPfam_SET,superfamily_SET domain
SETD6	79918	genome.wustl.edu	37	16	58552708	58552708	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024860.2	+1	validated	p.S375	0.012	170	0%	239	32.2%	-	-	-	-	-	superfamily_RuBisCo LSMT C-terminal substrate-binding domain
CNOT1	23019	genome.wustl.edu	37	16	58580308	58580308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016284.3	-1	validated	p.R1308H	1.000	187	0.5%	57	36.8%	-	-	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58633174	58633174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016284.3	-1	validated	p.K23T	1.000	248	0%	134	36.6%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SLC38A7	55238	genome.wustl.edu	37	16	58713931	58713931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018231.1	-1	provisional	p.A34T	0.772	18	0%	41	39%	-	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	NULL
CDH8	1006	genome.wustl.edu	37	16	61851493	61851493	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001796.2	-1	reviewed	p.P389	0.001	130	0%	21	33.3%	-	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61854905	61854905	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001796.2	-1	reviewed	p.I316	0.985	138	0%	33	12.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH11	1009	genome.wustl.edu	37	16	64984897	64984897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001797.2	-1	reviewed	p.R556Q	0.979	39	0%	28	46.4%	-	-	benign(0.094)	tolerated(0.13)	neutral(0.260)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH11	1009	genome.wustl.edu	37	16	65005962	65005962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001797.2	-1	reviewed	p.R466W	0.982	108	0%	28	28.6%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH11	1009	genome.wustl.edu	37	16	65006807	65006807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001797.2	-1	reviewed	p.H464Y	1.000	165	0%	38	34.2%	-	-	possibly_damaging(0.715)	tolerated(0.15)	deleterious(0.500)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66420930	66420930	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001795.3	+1	reviewed	p.D143	0.453	117	0%	109	33.9%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66424469	66424469	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001795.3	+1	reviewed	p.N315	0.864	69	0%	66	33.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66434906	66434906	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001795.3	+1	reviewed	p.I608	1.000	21	0%	43	53.5%	-	-	-	-	-	NULL
CMTM1	113540	genome.wustl.edu	37	16	66600489	66600489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052999.3	+1	reviewed	p.A25T	0.000	39	0%	66	13.6%	-	-	unknown(0)	-	-	NULL
CMTM1	113540	genome.wustl.edu	37	16	66611057	66611057	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052999.3	+1	reviewed	p.I214	0.000	201	0%	288	37.5%	-	-	-	-	-	HMMPfam_MARVEL
CMTM2	146225	genome.wustl.edu	37	16	66621835	66621835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144673.2	+1	reviewed	p.A187V	0.008	129	0%	113	40.7%	-	-	benign(0)	tolerated(1)	-	HMMPfam_MARVEL
CMTM4	146223	genome.wustl.edu	37	16	66655975	66655975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178818.2	-1	reviewed	p.R205C	1.000	27	0%	49	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAE1	8883	genome.wustl.edu	37	16	66847725	66847725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003905.3	-1	reviewed	p.F289L	1.000	343	0%	247	35.6%	-	-	benign(0.015)	tolerated(0.83)	neutral(0.001)	superfamily_Activating enzymes of the ubiquitin-like proteins
CA7	766	genome.wustl.edu	37	16	66881124	66881124	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005182.2	+1	reviewed	p.R78*	1.000	68	0%	110	31.8%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
PDP2	57546	genome.wustl.edu	37	16	66919297	66919297	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020786.1	+1	validated	p.T370	0.000	197	0%	244	40.6%	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PDP2	57546	genome.wustl.edu	37	16	66919602	66919602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020786.1	+1	validated	p.T472M	1.000	28	0%	20	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
CES4A	283848	genome.wustl.edu	37	16	67042970	67042970	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173815.4	+1	validated	p.K467	0.994	83	0%	122	28.7%	-	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
B3GNT9	84752	genome.wustl.edu	37	16	67183938	67183938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033309.2	-1	validated	p.R151C	1.000	14	0%	13	53.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Galactosyl_T
HSF4	3299	genome.wustl.edu	37	16	67199707	67199707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040667.2	+1	reviewed	p.F106	1.000	4	0.000	7	0.571	-	-	-	-	-	"HMMPfam_HSF_DNA-bind,HMMSmart_SM00415,superfamily_""Winged helix"" DNA-binding domain"
ELMO3	79767	genome.wustl.edu	37	16	67236411	67236411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024712.3	+1	reviewed	p.R511Q	1.000	64	0%	123	28.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ELMO_CED12
TMEM208	29100	genome.wustl.edu	37	16	67262736	67262736	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014187.3	+1	validated	p.V112	0.999	120	0%	165	41.2%	-	-	-	-	-	HMMPfam_DUF788
FHOD1	29109	genome.wustl.edu	37	16	67271164	67271164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013241.2	-1	reviewed	p.R324H	0.097	11	0%	29	37.9%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
FHOD1	29109	genome.wustl.edu	37	16	67271473	67271473	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013241.2	-1	reviewed	e8-1	0.995	82	0%	129	38.8%	-	-	-	-	-	-
SLC9A5	6553	genome.wustl.edu	37	16	67288969	67288969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004594.2	+1	validated	p.S179I	1.000	94	0%	135	37%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Na_H_Exchanger
PLEKHG4	25894	genome.wustl.edu	37	16	67314086	67314086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001129727.1	+1	reviewed	p.G47C	0.000	24	0%	62	40.3%	-	-	possibly_damaging(0.793)	tolerated(0.05)	deleterious(0.643)	NULL
KCTD19	146212	genome.wustl.edu	37	16	67338354	67338354	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100915.1	-1	provisional	p.E141*	1.000	152	0%	136	34.6%	-	-	-	-	-	NULL
ZDHHC1	29800	genome.wustl.edu	37	16	67428935	67428935	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013304.2	-1	validated	p.C400	0.670	22	0%	37	48.6%	-	-	-	-	-	NULL
ATP6V0D1	9114	genome.wustl.edu	37	16	67472980	67472980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004691.4	-1	reviewed	p.R237H	1.000	47	0%	77	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_vATP-synt_AC39,superfamily_V-type ATP synthase subunit C
C16orf48	84080	genome.wustl.edu	37	16	67697371	67697371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032140.1	-1	predicted	p.R278C	0.021	24	0%	60	28.3%	-	-	possibly_damaging(0.598)	deleterious(0.02)	deleterious(0.590)	NULL
CENPT	80152	genome.wustl.edu	37	16	67863371	67863371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025082.3	-1	validated	p.R412Q	0.000	74	0%	147	39.5%	-	-	benign(0.034)	tolerated(0.19)	neutral(0.052)	NULL
NUTF2	10204	genome.wustl.edu	37	16	67902250	67902250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005796.1	+1	reviewed	p.A36V	1.000	159	0%	165	13.3%	-	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_NTF2,PatternScan_WD_REPEATS_1,superfamily_NTF2-like
EDC4	23644	genome.wustl.edu	37	16	67914657	67914657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014329.3	+1	validated	p.E765	0.954	30	0%	86	32.6%	-	-	-	-	-	NULL
SLC12A4	6560	genome.wustl.edu	37	16	67985091	67985091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005072.4	-1	validated	p.A417T	0.890	91	0%	159	34%	-	-	benign(0)	tolerated(1)	-	HMMPfam_AA_permease
SLC12A4	6560	genome.wustl.edu	37	16	67985802	67985802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005072.4	-1	validated	p.S352	0.961	30	0%	49	40.8%	-	-	-	-	-	HMMPfam_AA_permease
DPEP2	64174	genome.wustl.edu	37	16	68026018	68026018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022355.2	-1	validated	p.R157C	0.118	133	0%	226	37.6%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases
NFATC3	4775	genome.wustl.edu	37	16	68224804	68224804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173165.1	+1	reviewed	p.Q744H	0.999	82	0%	68	36.8%	-	-	benign(0.396)	deleterious(0.03)	deleterious(0.491)	NULL
ESRP2	80004	genome.wustl.edu	37	16	68265869	68265869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024939.2	-1	validated	p.E379K	0.998	40	0%	61	27.9%	-	-	benign(0.02)	tolerated(0.18)	neutral(0.057)	HMMSmart_RRM,superfamily_SSF54928
PRMT7	54496	genome.wustl.edu	37	16	68391085	68391085	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019023.2	+1	validated	p.G679	0.975	46	0%	117	29.9%	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZFP90	146198	genome.wustl.edu	37	16	68598203	68598203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133458.2	+1	provisional	p.A505S	1.000	94	0%	39	23.1%	-	-	benign(0.346)	tolerated(0.05)	neutral(0.455)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COG8	84342	genome.wustl.edu	37	16	69368577	69368577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032382.4	-1	reviewed	p.P420	0.001	72	0%	137	38.7%	-	-	-	-	-	NULL
TERF2	7014	genome.wustl.edu	37	16	69395374	69395374	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005652.2	-1	reviewed	p.W411*	1.000	236	0%	133	28.6%	-	-	-	-	-	NULL
WWP2	11060	genome.wustl.edu	37	16	69833102	69833102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007014.3	+1	reviewed	p.D82Y	1.000	120	0%	90	30%	-	-	probably_damaging(0.987)	tolerated(0.34)	neutral(0.460)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
WWP2	11060	genome.wustl.edu	37	16	69964077	69964077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007014.3	+1	reviewed	p.Y454C	1.000	61	0%	90	42.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
CLEC18A	348174	genome.wustl.edu	37	16	69996934	69996934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182619.2	+1	validated	p.R423C	0.999	350	0%	672	19.3%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
MTSS1L	92154	genome.wustl.edu	37	16	70713780	70713780	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138383.2	-1	provisional	p.N97	0.915	10	0%	34	32.4%	-	-	-	-	-	HMMPfam_IMD
VAC14	55697	genome.wustl.edu	37	16	70796857	70796857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018052.3	-1	validated	p.T411M	0.910	78	0%	64	37.5%	-	-	benign(0.019)	tolerated(0.11)	neutral(0.273)	superfamily_ARM-type_fold
ATXN1L	342371	genome.wustl.edu	37	16	71885079	71885079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137675.2	+1	validated	p.T479M	0.996	110	0%	153	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AXH,superfamily_Ataxin-1_HBP1
ATXN1L	342371	genome.wustl.edu	37	16	71885630	71885630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137675.2	+1	validated	p.A663T	1.000	10	0%	27	37%	-	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71963549	71963549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000335106	-1	known	p.Q1695H	0.998	287	0%	182	14.3%	-	-	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	72013696	72013696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000335106	-1	known	p.V463F	0.031	96	1%	40	30%	-	-	-	-	-	NULL
DHX38	9785	genome.wustl.edu	37	16	72141656	72141656	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014003.3	+1	reviewed	p.I974	0.922	53	0%	77	31.2%	-	-	-	-	-	HMMPfam_HA2,superfamily_SSF52540
DHX38	9785	genome.wustl.edu	37	16	72142276	72142276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014003.3	+1	reviewed	p.R1039W	1.000	122	0%	124	39.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PMFBP1	83449	genome.wustl.edu	37	16	72184605	72184605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031293.2	-1	validated	p.L180I	0.995	108	0%	38	21.1%	-	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72993702	72993702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006885.3	-1	reviewed	p.D115N	1.000	16	0%	29	34.5%	-	-	unknown(0)	-	-	NULL
MLKL	197259	genome.wustl.edu	37	16	74719413	74719413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152649.2	-1	validated	p.R264H	0.995	243	0%	198	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZNRF1	84937	genome.wustl.edu	37	16	75127537	75127537	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032268.4	+1	reviewed	p.C164	1.000	176	0%	165	37.6%	-	-	-	-	-	NULL
LDHD	197257	genome.wustl.edu	37	16	75148517	75148517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153486.2	-1	reviewed	p.R179H	1.000	12	0%	20	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAD_binding_4,superfamily_FAD-binding domain
CTRB2	440387	genome.wustl.edu	37	16	75239658	75239658	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025200.3	-1	validated	p.Q99	1.000	96	0%	191	18.8%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
CTRB1	1504	genome.wustl.edu	37	16	75252932	75252932	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001906.4	+1	validated	p.C9	1.000	54	0%	108	31.5%	-	-	-	-	-	NULL
CHST6	4166	genome.wustl.edu	37	16	75512726	75512726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021615.4	-1	reviewed	p.R334H	1.000	20	0%	33	42.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CHST6	4166	genome.wustl.edu	37	16	75512839	75512839	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021615.4	-1	reviewed	p.T296	0.765	12	0%	22	40.9%	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CHST5	23563	genome.wustl.edu	37	16	75563222	75563222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024533.3	-1	validated	p.A354D	1.000	4	0.000	20	0.350	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM231	79583	genome.wustl.edu	37	16	75589913	75589913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077416.1	-1	validated	p.A62V	0.001	12	0%	20	45%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_NAcGluc_Transf
ADAT1	23536	genome.wustl.edu	37	16	75646481	75646481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012091.2	-1	reviewed	p.L235I	0.000	246	0%	152	42.1%	-	-	possibly_damaging(0.465)	tolerated(0.34)	neutral(0.176)	HMMPfam_A_deamin,HMMSmart_SM00552
CNTNAP4	85445	genome.wustl.edu	37	16	76501295	76501295	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033401.3	+1	reviewed	p.V510A	0.259	260	0%	68	30.9%	-	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76569632	76569632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138994.3	+1	validated	p.F909L	1.000	71	0%	17	47.1%	-	-	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76592471	76592471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033401.3	+1	reviewed	p.E1273*	1.000	162	0%	41	22%	-	-	benign(0.113)	tolerated(0.08)	neutral(0.309)	NULL
ADAMTS18	170692	genome.wustl.edu	37	16	77396115	77396115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199355.2	-1	reviewed	p.F368S	1.000	131	0%	33	39.4%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS18	170692	genome.wustl.edu	37	16	77397737	77397737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199355.2	-1	reviewed	p.V340M	1.000	98	0%	32	34.4%	-	-	benign(0.024)	deleterious(0)	neutral(0.446)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
VAT1L	57687	genome.wustl.edu	37	16	77859168	77859168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020927.1	+1	provisional	p.V130A	1.000	74	0%	52	26.9%	-	-	benign(0.005)	tolerated(0.66)	neutral(0.003)	superfamily_GroES_like,HMMPfam_ADH_N
PKD1L2	114780	genome.wustl.edu	37	16	81181083	81181083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052892.3	-1	reviewed	p.L1670I	1.000	97	0%	86	31.4%	-	-	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81208336	81208336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001076780.1	-1	reviewed	p.V923I	0.000	76	0%	58	34.5%	-	-	benign(0.002)	tolerated(0.61)	neutral(0.004)	NULL
BCMO1	53630	genome.wustl.edu	37	16	81301674	81301674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017429.2	+1	reviewed	p.A261T	1.000	119	0%	111	35.1%	-	-	benign(0.035)	tolerated(0.08)	neutral(0.302)	HMMPfam_RPE65
GAN	8139	genome.wustl.edu	37	16	81398614	81398614	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022041.3	+1	reviewed	p.Y424	0.976	63	0%	57	31.6%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
GAN	8139	genome.wustl.edu	37	16	81411177	81411177	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022041.3	+1	reviewed	p.F590	1.000	58	0%	30	36.7%	-	-	-	-	-	NULL
CMIP	80790	genome.wustl.edu	37	16	81691379	81691379	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198390.2	+1	validated	e5-1	1.000	91	0%	125	32%	-	-	-	-	-	-
CMIP	80790	genome.wustl.edu	37	16	81691410	81691410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198390.2	+1	validated	p.N224H	1.000	111	0%	134	41.8%	-	-	benign(0.024)	tolerated(0.12)	neutral(0.262)	NULL
PLCG2	5336	genome.wustl.edu	37	16	81934352	81934352	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002661.2	+1	validated	p.S443	0.047	20	0%	33	54.5%	-	-	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCG2	5336	genome.wustl.edu	37	16	81944326	81944326	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002661.2	+1	validated	e17+1	1.000	30	0%	43	11.6%	-	-	-	-	-	-
PLCG2	5336	genome.wustl.edu	37	16	81971494	81971494	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002661.2	+1	validated	p.T1062S	1.000	60	0%	36	11.1%	-	-	benign(0.003)	tolerated(0.76)	neutral(0.001)	HMMSmart_C2,superfamily_C2_CaLB
CDH13	1012	genome.wustl.edu	37	16	83159070	83159070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001257.3	+1	reviewed	p.E149D	1.000	153	0%	70	37.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin
MBTPS1	8720	genome.wustl.edu	37	16	84125349	84125349	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003791.2	-1	reviewed	p.P317	0.286	81	0%	62	29%	-	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
MBTPS1	8720	genome.wustl.edu	37	16	84135383	84135383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003791.2	-1	reviewed	p.K2N	1.000	127	0%	71	28.2%	-	-	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84209571	84209571	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178452.4	+1	reviewed	p.S577	0.000	57	0%	66	30.3%	-	-	-	-	-	NULL
TAF1C	9013	genome.wustl.edu	37	16	84216898	84216898	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005679.2	-1	reviewed	p.A120	0.946	94	0%	194	37.1%	-	-	-	-	-	NULL
ATP2C2	9914	genome.wustl.edu	37	16	84488443	84488443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014861.2	+1	validated	p.A667V	0.976	73	1.4%	97	35.1%	-	-	benign(0.217)	tolerated(0.16)	neutral(0.081)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ENSG00000248612	0	genome.wustl.edu	37	16	84493038	84493038	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000508094	-1	known	NULL	0.002	30	0%	41	36.6%	-	-	-	-	-	-
KIAA1609	57707	genome.wustl.edu	37	16	84514163	84514163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020947.3	-1	validated	p.A410V	0.697	64	1.6%	83	39.8%	-	-	benign(0.358)	deleterious(0.02)	deleterious(0.496)	HMMPfam_TLD,HMMSmart_SM00584
USP10	9100	genome.wustl.edu	37	16	84779007	84779007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005153.2	+1	reviewed	p.T307M	0.000	58	0%	45	33.3%	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
KIAA0182	23199	genome.wustl.edu	37	16	85698628	85698628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014615.2	+1	validated	p.E884D	1.000	58	0%	60	40%	-	-	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	NULL
COX4NB	10328	genome.wustl.edu	37	16	85814026	85814026	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006067.4	-1	validated	p.Y144	1.000	60	0%	93	41.9%	-	-	-	-	-	HMMPfam_UPF0172
COX4NB	10328	genome.wustl.edu	37	16	85822654	85822654	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006067.4	-1	validated	p.I78	1.000	130	0%	115	41.7%	-	-	-	-	-	HMMPfam_UPF0172
FOXF1	2294	genome.wustl.edu	37	16	86544549	86544549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001451.2	+1	reviewed	p.D125G	1.000	24	4.2%	59	44.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
FOXL1	2300	genome.wustl.edu	37	16	86612433	86612433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005250.2	+1	validated	p.A35V	0.175	22	0%	46	41.3%	-	-	possibly_damaging(0.747)	deleterious(0.02)	deleterious(0.657)	NULL
FBXO31	79791	genome.wustl.edu	37	16	87377236	87377236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024735.3	-1	validated	p.G209S	1.000	50	0%	86	38.4%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
MAP1LC3B	81631	genome.wustl.edu	37	16	87435796	87435796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022818.4	+1	reviewed	p.Y38H	1.000	111	0%	120	10.8%	-	-	probably_damaging(0.973)	tolerated(0.13)	deleterious(0.667)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
MAP1LC3B	81631	genome.wustl.edu	37	16	87436622	87436622	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022818.4	+1	reviewed	p.Y99	0.978	203	0%	207	31.4%	-	-	-	-	-	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
ZCCHC14	23174	genome.wustl.edu	37	16	87445764	87445764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015144.2	-1	validated	p.A718T	0.001	24	0%	70	35.7%	-	-	unknown(0)	tolerated(0.36)	-	NULL
JPH3	57338	genome.wustl.edu	37	16	87636893	87636893	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020655.2	+1	reviewed	p.F47	1.000	30	0%	66	37.9%	-	-	-	-	-	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
KLHDC4	54758	genome.wustl.edu	37	16	87744863	87744863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017566.3	-1	validated	p.R341H	1.000	47	0%	80	16.3%	-	-	possibly_damaging(0.908)	tolerated(0.08)	deleterious(0.661)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
SLC7A5	8140	genome.wustl.edu	37	16	87902836	87902836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003486.5	-1	validated	p.G65S	1.000	9	0.000	31	0.355	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
CA5A	763	genome.wustl.edu	37	16	87960363	87960363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001739.1	-1	reviewed	p.E111K	0.951	35	0%	67	34.3%	-	-	possibly_damaging(0.536)	tolerated(0.12)	neutral(0.442)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ZNF469	84627	genome.wustl.edu	37	16	88494941	88494941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127464.1	+1	reviewed	p.L355F	0.002	3	0.000	11	0.455	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88498324	88498324	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127464.1	+1	reviewed	p.F1454	0.000	49	0%	140	42.1%	-	-	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88501727	88501727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127464.1	+1	reviewed	p.R2589*	0.000	15	0%	53	24.5%	-	-	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88504710	88504710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127464.1	+1	reviewed	p.A3583V	0.000	5	0.000	17	0.471	-	-	benign(0.355)	tolerated(1)	neutral(0.113)	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88664695	88664695	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144604.3	+1	validated	p.P266	0.992	61	0%	76	27.6%	-	-	-	-	-	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88677874	88677874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144604.3	+1	validated	p.D469N	0.999	12	0%	25	40%	-	-	unknown(0)	tolerated(0.28)	-	NULL
CYBA	1535	genome.wustl.edu	37	16	88713182	88713182	+	Missense_Mutation	SNP	G	G	A	rs179363892		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000101.2	-1	reviewed	p.R90W	1.000	42	0%	113	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cytochrom_B558a
CTU2	348180	genome.wustl.edu	37	16	88778074	88778074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012759.1	+1	validated	p.R105H	1.000	82	0%	173	31.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Adenine nucleotide alpha hydrolases-like
CTU2	348180	genome.wustl.edu	37	16	88781328	88781328	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012759.1	+1	validated	p.K471	1.000	31	0%	80	15%	-	-	-	-	-	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88783011	88783011	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451779	-1	known	p.N1831	0.559	22	0%	42	33.3%	-	-	-	-	-	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88788064	88788064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451779	-1	known	p.R1299H	1.000	25	0%	47	46.8%	-	-	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88788077	88788077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451779	-1	known	p.V1295M	0.000	27	0%	46	34.8%	-	-	benign(0.145)	tolerated(0.21)	neutral(0.056)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88788368	88788368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451779	-1	known	p.E1225K	1.000	9	0.000	21	0.286	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88789559	88789559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451779	-1	known	p.G1017V	0.059	12	0%	63	44.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDT1	81620	genome.wustl.edu	37	16	88872463	88872463	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030928.3	+1	validated	p.S289	0.000	20	0%	40	30%	-	-	-	-	-	"HMMPfam_CDT1,superfamily_""Winged helix"" DNA-binding domain"
GALNS	2588	genome.wustl.edu	37	16	88902225	88902225	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000512.4	-1	reviewed	p.R222	0.000	69	0%	148	34.5%	-	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PABPN1L	390748	genome.wustl.edu	37	16	88932034	88932034	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080487.1	-1	provisional	p.C132	0.000	22	0%	53	43.4%	-	-	-	-	-	superfamily_RNA-binding domain RBD
ZNF778	197320	genome.wustl.edu	37	16	89294388	89294388	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182531.2	+1	validated	p.T536	0.016	142	0.7%	152	11.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD11	29123	genome.wustl.edu	37	16	89348420	89348420	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013275.4	-1	validated	p.P1510	0.007	111	0%	230	37.4%	-	-	-	-	-	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89357057	89357057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013275.4	-1	validated	p.D193Y	0.999	42	0%	98	32.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SPG7	6687	genome.wustl.edu	37	16	89597174	89597174	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003119.2	+1	reviewed	p.H315	0.057	85	0%	134	38.8%	-	-	-	-	-	HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPG7	6687	genome.wustl.edu	37	16	89598891	89598891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003119.2	+1	reviewed	p.R391W	1.000	14	0%	23	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPG7	6687	genome.wustl.edu	37	16	89620301	89620301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003119.2	+1	reviewed	p.A679V	0.002	9	0.000	20	0.450	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_Peptidase_M41,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPNE7	27132	genome.wustl.edu	37	16	89645276	89645276	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014427.4	+1	reviewed	p.K123	0.001	114	0%	209	39.7%	-	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CDK10	8558	genome.wustl.edu	37	16	89756996	89756996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052988.4	+1	reviewed	p.A66T	1.000	236	0%	423	12.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
TCF25	22980	genome.wustl.edu	37	16	89971346	89971346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014972.2	+1	validated	p.S490R	1.000	18	0%	50	18%	-	-	possibly_damaging(0.452)	tolerated(0.07)	neutral(0.467)	HMMPfam_DUF654
TCF25	22980	genome.wustl.edu	37	16	89971416	89971416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014972.2	+1	validated	p.A514T	0.142	28	0%	59	42.4%	-	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_DUF654
TUBB3	10381	genome.wustl.edu	37	16	90001591	90001591	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006086.2	+1	validated	p.G244	1.000	67	0%	85	28.2%	-	-	-	-	-	superfamily_Tubulin C-terminal domain-like
VPS53	55275	genome.wustl.edu	37	17	422435	422435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128159.1	-1	reviewed	p.A811V	0.994	49	0%	69	31.9%	-	-	benign(0.022)	tolerated(0.51)	neutral(0.010)	NULL
VPS53	55275	genome.wustl.edu	37	17	565055	565055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128159.1	-1	reviewed	p.E122	1.000	331	0%	322	37%	-	-	-	-	-	HMMPfam_Vps53_N
GEMIN4	50628	genome.wustl.edu	37	17	649817	649817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015721.2	-1	reviewed	p.D489V	0.985	35	0%	45	40%	-	-	benign(0.268)	tolerated(0.06)	neutral(0.351)	NULL
NXN	64359	genome.wustl.edu	37	17	729296	729296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022463.3	-1	validated	p.R128Q	1.000	260	0%	342	30.4%	-	-	possibly_damaging(0.559)	tolerated(0.14)	neutral(0.440)	superfamily_Thioredoxin-like
PRPF8	10594	genome.wustl.edu	37	17	1579034	1579034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006445.3	-1	reviewed	p.T918S	1.000	129	0%	124	30.6%	-	-	benign(0.31)	tolerated(0.06)	neutral(0.419)	NULL
WDR81	124997	genome.wustl.edu	37	17	1630687	1630687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000409644	+1	known	p.K812E	1.000	9	0.000	35	0.429	-	-	benign(0.044)	tolerated(0.77)	neutral(0.004)	superfamily_WD40 repeat-like
LOC100288244	100288244	genome.wustl.edu	37	17	1638917	1638917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343496.1	-1	model	p.A14T	0.996	24	0%	76	34.2%	-	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	NULL
SERPINF2	5345	genome.wustl.edu	37	17	1657507	1657507	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000934.3	+1	reviewed	p.E385	1.000	35	0%	69	37.7%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
RTN4RL1	146760	genome.wustl.edu	37	17	1840633	1840633	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178568.2	-1	validated	p.I161	0.320	36	0%	59	42.4%	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SGSM2	9905	genome.wustl.edu	37	17	2279498	2279498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014853.2	+1	validated	p.R851H	1.000	73	0%	127	27.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
MNT	4335	genome.wustl.edu	37	17	2290510	2290510	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020310.2	-1	reviewed	p.A478	0.998	60	0%	102	32.4%	-	-	-	-	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2601479	2601479	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015229.3	-1	validated	p.L520	1.000	39	0%	75	36%	-	-	-	-	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2604112	2604112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015229.3	-1	validated	p.R307C	1.000	14	0%	38	44.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF103107
OR1E1	8387	genome.wustl.edu	37	17	3300795	3300795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003553.2	-1	validated	p.V304F	0.000	119	0%	67	32.8%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_SSF81321
OR1E1	8387	genome.wustl.edu	37	17	3301146	3301146	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003553.2	-1	validated	p.L187	0.053	133	0%	57	36.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRPV1	7442	genome.wustl.edu	37	17	3493666	3493666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018727.5	-1	reviewed	p.A209T	1.000	60	0%	112	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SHPK	23729	genome.wustl.edu	37	17	3513887	3513887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013276.2	-1	reviewed	p.M468I	1.000	59	0%	65	21.5%	-	-	benign(0.012)	tolerated(0.2)	neutral(0.050)	superfamily_Actin-like ATPase domain
GSG2	83903	genome.wustl.edu	37	17	3627685	3627685	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031965.2	+1	validated	p.V152	0.561	6	0.000	30	0.467	-	-	-	-	-	NULL
GSG2	83903	genome.wustl.edu	37	17	3628867	3628867	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031965.2	+1	validated	p.S546	0.062	64	0%	90	42.2%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ITGAE	3682	genome.wustl.edu	37	17	3651318	3651318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002208.4	-1	reviewed	p.S685P	0.979	78	0%	105	31.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,superfamily_SSF69179
C17orf85	55421	genome.wustl.edu	37	17	3725292	3725292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114118.1	-1	provisional	p.G284V	1.000	250	0%	141	36.2%	-	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
CAMKK1	84254	genome.wustl.edu	37	17	3772875	3772875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172207.2	-1	reviewed	p.P454H	0.996	77	0%	114	37.7%	-	-	benign(0.103)	tolerated(0.11)	neutral(0.280)	superfamily_Kinase_like
P2RX1	5023	genome.wustl.edu	37	17	3801112	3801112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002558.2	-1	reviewed	p.S399Y	0.997	56	0%	143	38.5%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
ATP2A3	489	genome.wustl.edu	37	17	3846007	3846007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174953.1	-1	reviewed	p.R480W	1.000	58	0%	111	32.4%	-	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ZZEF1	23140	genome.wustl.edu	37	17	3916781	3916781	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015113.3	-1	validated	p.I2847	1.000	36	0%	57	35.1%	-	-	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3924558	3924558	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015113.3	-1	validated	p.H2423	0.028	88	0%	67	34.3%	-	-	-	-	-	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4109764	4109764	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016376.3	-1	validated	p.N250	0.998	133	0%	121	9.9%	-	-	-	-	-	superfamily_ANK
GGT6	124975	genome.wustl.edu	37	17	4462209	4462209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001122890.1	-1	validated	p.R195S	0.992	15	0%	36	30.6%	-	-	possibly_damaging(0.487)	deleterious(0.01)	deleterious(0.568)	HMMPfam_G_glu_transpept
PELP1	27043	genome.wustl.edu	37	17	4575216	4575216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014389.2	-1	validated	p.P1024S	0.388	48	0%	81	28.4%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4644131	4644131	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136046.1	+1	provisional	p.H96	1.000	47	0%	76	38.2%	-	-	-	-	-	NULL
MINK1	50488	genome.wustl.edu	37	17	4794897	4794897	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153827.4	+1	reviewed	p.T629	0.358	48	2.1%	98	43.9%	-	-	-	-	-	NULL
CHRNE	1145	genome.wustl.edu	37	17	4802835	4802835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000080.3	-1	reviewed	p.M320I	1.000	19	0%	46	43.5%	-	-	benign(0.028)	tolerated(1)	neutral(0.002)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CHRNE	1145	genome.wustl.edu	37	17	4805255	4805255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000080.3	-1	reviewed	p.D158N	1.000	43	0%	60	10%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL
ENO3	2027	genome.wustl.edu	37	17	4856376	4856376	+	Missense_Mutation	SNP	A	A	T	rs238238	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001976.3	+1	reviewed	p.N71I	1.000	47	0%	130	46.9%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like
KIF1C	10749	genome.wustl.edu	37	17	4925425	4925425	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006612.5	+1	validated	p.R683	0.975	7	0.000	33	0.333	-	-	-	-	-	NULL
ZFP3	124961	genome.wustl.edu	37	17	4994836	4994836	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153018.2	+1	validated	p.E13*	1.000	112	0%	113	42.5%	-	-	-	-	-	NULL
ZNF232	7775	genome.wustl.edu	37	17	5009398	5009398	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014519.2	-1	validated	p.I352M	0.999	151	0%	220	35.9%	-	-	unknown(0)	tolerated(0.22)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF594	84622	genome.wustl.edu	37	17	5086692	5086692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032530.1	-1	validated	p.R287I	0.985	133	0%	137	34.3%	-	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MIS12	79003	genome.wustl.edu	37	17	5392783	5392783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024039.1	+1	provisional	p.R201*	0.243	52	0%	87	34.5%	-	-	-	-	-	NULL
WSCD1	23302	genome.wustl.edu	37	17	5998475	5998475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015253.1	+1	validated	p.A261P	0.003	79	0%	94	33%	-	-	benign(0.167)	tolerated(0.06)	neutral(0.338)	HMMPfam_WSC,HMMSmart_WSC
TEKT1	83659	genome.wustl.edu	37	17	6703447	6703447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053285.1	-1	reviewed	p.D386N	1.000	60	0%	23	17.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
SLC16A11	162515	genome.wustl.edu	37	17	6945878	6945878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153357.1	-1	validated	p.T208I	0.940	11	0%	33	36.4%	-	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CLEC10A	10462	genome.wustl.edu	37	17	6979401	6979401	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182906.2	-1	reviewed	p.V141	0.054	43	0%	66	40.9%	-	-	-	-	-	HMMPfam_Lectin_N
ASGR2	433	genome.wustl.edu	37	17	7011806	7011806	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001181.3	-1	reviewed	p.T109	0.001	37	0%	54	38.9%	-	-	-	-	-	HMMPfam_Lectin_N
C17orf81	23587	genome.wustl.edu	37	17	7162016	7162016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203413.1	+1	validated	p.A250V	0.001	109	0%	219	10%	-	-	benign(0.093)	deleterious(0)	neutral(0.452)	HMMPfam_Hap2_elong
SLC2A4	6517	genome.wustl.edu	37	17	7189843	7189843	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042.2	+1	reviewed	p.T475	0.051	155	0%	305	43.9%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
YBX2	51087	genome.wustl.edu	37	17	7193598	7193598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015982.3	-1	validated	p.R239Q	1.000	11	0%	44	56.8%	-	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	NULL
NEURL4	84461	genome.wustl.edu	37	17	7231094	7231094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032442.2	-1	validated	p.S131L	1.000	47	2.1%	81	29.6%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00588
TMEM95	339168	genome.wustl.edu	37	17	7259773	7259773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389982	+1	known	p.S155F	0.411	168	0%	270	33.3%	-	-	unknown(0)	-	-	NULL
TNK1	8711	genome.wustl.edu	37	17	7286605	7286605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003985.3	+1	validated	p.R67H	0.883	125	0%	240	37.5%	-	-	benign(0.339)	tolerated(0.06)	neutral(0.429)	NULL
TNK1	8711	genome.wustl.edu	37	17	7286911	7286911	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003985.3	+1	validated	p.L134	0.990	45	0%	91	35.2%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
TNK1	8711	genome.wustl.edu	37	17	7290726	7290726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003985.3	+1	validated	p.A476V	0.000	65	0%	114	32.5%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
ZBTB4	57659	genome.wustl.edu	37	17	7366933	7366933	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128833.1	-1	validated	p.P456	0.345	85	0%	171	38%	-	-	-	-	-	NULL
SLC35G6	643664	genome.wustl.edu	37	17	7385529	7385529	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102614.1	+1	provisional	p.R76*	0.996	206	0%	428	38.1%	-	-	-	-	-	superfamily_SSF103481
POLR2A	5430	genome.wustl.edu	37	17	7404318	7404318	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000937.3	+1	validated	p.T647	0.840	380	0%	365	23.6%	-	-	-	-	-	HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7412374	7412374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000937.3	+1	validated	p.V1193M	1.000	73	0%	90	15.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
SENP3	26168	genome.wustl.edu	37	17	7468843	7468843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000321337	+1	known	p.R385Q	1.000	147	0%	267	33.7%	-	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	superfamily_SSF54001
MPDU1	9526	genome.wustl.edu	37	17	7490862	7490862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004870.3	+1	reviewed	p.A246V	0.056	62	0%	137	29.2%	-	-	benign(0.012)	tolerated(0.19)	neutral(0.050)	NULL
WRAP53	55135	genome.wustl.edu	37	17	7592395	7592395	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018081.2	+1	validated	p.D143	0.589	60	0%	101	43.6%	-	-	-	-	-	superfamily_WD40_like
DNAH2	146754	genome.wustl.edu	37	17	7664167	7664167	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020877.2	+1	validated	p.I965	1.000	174	0%	202	12.9%	-	-	-	-	-	superfamily_Spectrin repeat
DNAH2	146754	genome.wustl.edu	37	17	7669692	7669692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020877.2	+1	validated	p.R1190W	0.998	71	1.4%	70	30%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7684102	7684102	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020877.2	+1	validated	e37+2	0.997	60	0%	57	38.6%	-	-	-	-	-	-
DNAH2	146754	genome.wustl.edu	37	17	7708391	7708391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020877.2	+1	validated	p.R3100Q	1.000	36	0%	71	23.9%	-	-	benign(0.051)	tolerated(0.54)	neutral(0.010)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7735948	7735948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020877.2	+1	validated	p.R4260C	0.999	68	0%	114	12.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
CHD3	1107	genome.wustl.edu	37	17	7796726	7796726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005271.2	+1	reviewed	p.A270V	1.000	36	0%	55	34.5%	-	-	probably_damaging(0.974)	-	-	NULL
GUCY2D	3000	genome.wustl.edu	37	17	7907256	7907256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000180.3	+1	reviewed	p.D270N	0.143	8	0.000	38	0.474	-	-	probably_damaging(0.975)	tolerated(0.17)	deleterious(0.476)	HMMPfam_ANF_receptor,superfamily_SSF53822
GUCY2D	3000	genome.wustl.edu	37	17	7910401	7910401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000180.3	+1	reviewed	p.L468I	0.986	195	0%	383	33.7%	-	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
GUCY2D	3000	genome.wustl.edu	37	17	7915503	7915503	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000180.3	+1	reviewed	p.G597	1.000	43	0%	67	14.9%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ALOX15B	247	genome.wustl.edu	37	17	7946140	7946140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001141.2	+1	reviewed	p.G205E	0.734	62	0%	102	35.3%	-	-	benign(0.004)	tolerated(0.6)	neutral(0.004)	superfamily_Lipoxigenase
ALOXE3	59344	genome.wustl.edu	37	17	8017922	8017922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021628.2	-1	reviewed	p.G187V	1.000	110	0%	171	37.4%	-	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	superfamily_Lipoxygenase
ALOXE3	59344	genome.wustl.edu	37	17	8019007	8019007	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021628.2	-1	reviewed	e3-1	1.000	175	0%	301	36.2%	-	-	-	-	-	-
SLC25A35	399512	genome.wustl.edu	37	17	8193969	8193969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000396278	-1	known	p.A253T	0.991	14	0%	24	33.3%	-	-	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ARHGEF15	22899	genome.wustl.edu	37	17	8219101	8219101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173728.2	+1	reviewed	p.R484C	0.831	102	0%	128	30.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ODF4	146852	genome.wustl.edu	37	17	8248749	8248749	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153007.4	+1	reviewed	p.W181*	1.000	230	0%	371	34.5%	-	-	-	-	-	NULL
KRBA2	124751	genome.wustl.edu	37	17	8274703	8274703	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213597.2	-1	provisional	p.W50*	0.000	135	0%	178	31.5%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
MYH10	4628	genome.wustl.edu	37	17	8380302	8380302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005964.1	-1	validated	p.A1893V	1.000	43	0%	69	34.8%	-	-	benign(0.017)	tolerated(0.47)	neutral(0.011)	HMMPfam_Myosin_tail_1
MYH10	4628	genome.wustl.edu	37	17	8381682	8381682	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005964.1	-1	validated	p.R1863*	0.998	116	0%	194	34.5%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH10	4628	genome.wustl.edu	37	17	8416951	8416951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005964.1	-1	validated	p.E853*	1.000	187	0%	128	18%	-	-	-	-	-	NULL
PIK3R5	23533	genome.wustl.edu	37	17	8789823	8789823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142633.1	-1	validated	p.P669S	0.699	97	0%	143	32.9%	-	-	possibly_damaging(0.761)	tolerated(0.18)	neutral(0.338)	HMMPfam_PI3K_1B_p101
RCVRN	5957	genome.wustl.edu	37	17	9808123	9808123	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002903.2	-1	reviewed	p.I125	1.000	42	0%	68	33.8%	-	-	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
GAS7	8522	genome.wustl.edu	37	17	9837546	9837546	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_201433.1	-1	reviewed	p.A274	0.699	84	0%	101	26.7%	-	-	-	-	-	HMMPfam_FCH,HMMSmart_SM00055
MYH13	8735	genome.wustl.edu	37	17	10248558	10248558	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003802.2	-1	validated	p.F515	0.998	321	0%	171	39.8%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10298725	10298725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002472.2	-1	reviewed	p.R1563C	0.996	216	0%	158	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10303992	10303992	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002472.2	-1	reviewed	p.S1150	0.373	60	0%	50	40%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10322056	10322056	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002472.2	-1	reviewed	p.P139	0.020	236	0%	93	16.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10352280	10352280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017533.2	-1	validated	p.K1422	1.000	117	0%	38	36.8%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10363547	10363547	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017533.2	-1	validated	p.F413	0.000	186	0.5%	49	42.9%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10534949	10534949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002470.2	-1	reviewed	p.K1755N	0.956	152	0%	131	40.5%	-	-	possibly_damaging(0.678)	deleterious(0)	deleterious(0.686)	HMMPfam_Myosin_tail_1
SHISA6	388336	genome.wustl.edu	37	17	11461317	11461317	+	Missense_Mutation	SNP	G	G	A	rs192374370	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207386.3	+1	validated	p.R451H	1.000	18	0%	32	37.5%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11572751	11572751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.R998I	0.000	70	0%	47	34%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11572959	11572959	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.T1067	0.969	161	0%	86	11.6%	-	-	-	-	-	superfamily_Spectrin repeat
DNAH9	1770	genome.wustl.edu	37	17	11593170	11593170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.R1344Q	0.860	26	0%	15	40%	-	-	benign(0.075)	tolerated(0.32)	neutral(0.029)	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11659910	11659910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.R2255M	1.000	80	0%	50	44%	-	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11775037	11775037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.F3392L	1.000	87	0%	77	41.6%	-	-	benign(0.281)	tolerated(0.6)	neutral(0.090)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11872749	11872749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001372.3	+1	reviewed	p.R4456W	0.987	59	0%	26	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
ZNF18	7566	genome.wustl.edu	37	17	11895985	11895985	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144680.2	-1	provisional	p.G54	1.000	58	0%	51	17.6%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
MAP2K4	6416	genome.wustl.edu	37	17	12032542	12032542	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003010.2	+1	reviewed	p.P326	0.972	122	0%	70	45.7%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC100128006	100128006	genome.wustl.edu	37	17	12665812	12665812	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078523.1	-1	model	NULL	0.000	3	0.000	14	0.571	-	-	-	-	-	-
HS3ST3B1	9953	genome.wustl.edu	37	17	14248727	14248727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006041.1	+1	reviewed	p.D313Y	1.000	67	0%	133	23.3%	-	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000205325	0	genome.wustl.edu	37	17	14683378	14683378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000379640	-1	known	p.L37I	0.000	82	0%	57	45.6%	-	-	unknown(0)	-	-	NULL
ZNF286A	57335	genome.wustl.edu	37	17	15620110	15620110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130842.1	+1	validated	p.E358*	0.145	218	0%	94	29.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCOR1	9611	genome.wustl.edu	37	17	15938173	15938173	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006311.2	-1	reviewed	p.T2347	0.003	129	0%	46	28.3%	-	-	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15965143	15965143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006311.2	-1	reviewed	p.A1818V	1.000	29	0%	28	39.3%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
NCOR1	9611	genome.wustl.edu	37	17	15968894	15968894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006311.2	-1	reviewed	p.T1619I	1.000	213	0%	78	35.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NCOR1	9611	genome.wustl.edu	37	17	16089913	16089913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006311.2	-1	reviewed	p.R66Q	0.996	68	0%	27	48.1%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
TRPV2	51393	genome.wustl.edu	37	17	16326202	16326202	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455666	+1	known	p.R166W	0.990	44	0%	56	32.1%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C17orf76-AS1	125144	genome.wustl.edu	37	17	16342473	16342473	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_027159.1	+1	predicted	NULL	0.000	10	0%	31	32.3%	-	-	-	-	-	-
ZNF624	57547	genome.wustl.edu	37	17	16526016	16526016	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020787.2	-1	validated	p.D728	0.999	215	0%	113	31.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNFRSF13B	23495	genome.wustl.edu	37	17	16852134	16852134	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012452.2	-1	reviewed	p.Q121	0.002	182	0%	157	45.2%	-	-	-	-	-	NULL
MPRIP	23164	genome.wustl.edu	37	17	17069108	17069108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000313485	+1	known	p.R379C	0.002	66	0%	118	34.7%	-	-	-	-	-	NULL
COPS3	8533	genome.wustl.edu	37	17	17168244	17168244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003653.2	-1	reviewed	p.D165N	1.000	162	0%	115	26.1%	-	-	possibly_damaging(0.646)	deleterious(0.05)	deleterious(0.572)	NULL
RAI1	10743	genome.wustl.edu	37	17	17700054	17700054	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030665.3	+1	reviewed	p.E1264	0.820	21	0%	47	42.6%	-	-	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18022917	18022917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016239.3	+1	reviewed	p.S268I	0.003	19	0%	34	29.4%	-	-	unknown(0)	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18044100	18044100	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016239.3	+1	reviewed	e20-1	1.000	69	0%	100	47%	-	-	-	-	-	-
MYO15A	51168	genome.wustl.edu	37	17	18045058	18045058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016239.3	+1	reviewed	p.N1875D	0.977	49	0%	104	30.8%	-	-	benign(0)	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO15A	51168	genome.wustl.edu	37	17	18047226	18047226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016239.3	+1	reviewed	p.T2030I	0.993	47	0%	101	31.7%	-	-	benign(0.094)	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18051502	18051502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016239.3	+1	reviewed	p.A2223	0.107	20	0%	35	54.3%	-	-	-	-	-	NULL
LLGL1	3996	genome.wustl.edu	37	17	18141888	18141888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004140.3	+1	reviewed	p.R724H	1.000	25	0%	53	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18220546	18220546	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144775.2	+1	validated	p.T481	0.000	62	0%	86	44.2%	-	-	-	-	-	NULL
TBC1D28	254272	genome.wustl.edu	37	17	18541202	18541202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039397.2	-1	validated	p.M158V	0.004	254	0%	363	28.9%	-	-	benign(0.202)	tolerated(0.09)	neutral(0.316)	superfamily_RabGAP_TBC
ALDH3A1	218	genome.wustl.edu	37	17	19646675	19646675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000691.4	-1	reviewed	p.E88D	1.000	41	0%	103	40.8%	-	-	benign(0.245)	tolerated(0.5)	neutral(0.035)	HMMPfam_Aldedh,superfamily_ALDH-like
SPECC1	92521	genome.wustl.edu	37	17	20130849	20130849	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033553.1	+1	validated	p.E663*	1.000	73	0%	45	31.1%	-	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20254668	20254668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444742	+1	known	p.E616D	0.014	308	0%	143	36.4%	-	-	-	-	-	NULL
USP22	23326	genome.wustl.edu	37	17	20911242	20911242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015276.1	-1	validated	p.E391K	1.000	114	0%	173	38.7%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP22	23326	genome.wustl.edu	37	17	20919075	20919075	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015276.1	-1	validated	p.R276	1.000	36	0%	56	33.9%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP22	23326	genome.wustl.edu	37	17	20921347	20921347	+	Missense_Mutation	SNP	G	G	T	rs12602576	byHapMap	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015276.1	-1	validated	p.L200M	1.000	77	0%	66	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP22	23326	genome.wustl.edu	37	17	20921417	20921417	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015276.1	-1	validated	p.R176	0.284	75	0%	75	38.7%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
DHRS7B	25979	genome.wustl.edu	37	17	21081638	21081638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015510.3	+1	validated	p.A98T	0.117	75	0%	68	22.1%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_adh_short,superfamily_NAD(P)-bd
FAM27L	284123	genome.wustl.edu	37	17	21825524	21825524	+	Silent	SNP	C	C	T	rs184672012	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000315762	+1	known	p.S8	0.014	21	0%	42	47.6%	-	-	-	-	-	NULL
FAM27L	284123	genome.wustl.edu	37	17	21826215	21826215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000315762	+1	known	p.R65K	0.003	45	0%	65	40%	-	-	benign(0.178)	-	-	NULL
WSB1	26118	genome.wustl.edu	37	17	25636259	25636259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015626.8	+1	reviewed	p.I282T	1.000	108	0%	49	26.5%	-	-	benign(0.01)	deleterious(0)	neutral(0.445)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WSB1	26118	genome.wustl.edu	37	17	25639342	25639342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015626.8	+1	reviewed	p.Q405*	0.999	125	0%	38	18.4%	-	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
LOC440419	440419	genome.wustl.edu	37	17	25752552	25752552	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_040504.2	+1	model	NULL	0.045	88	0%	88	33%	-	-	-	-	-	-
NOS2	4843	genome.wustl.edu	37	17	26101401	26101401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000625.4	-1	reviewed	p.S453Y	0.882	101	0%	125	36%	-	-	benign(0.219)	deleterious(0.01)	neutral(0.427)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS2	4843	genome.wustl.edu	37	17	26114853	26114853	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000625.4	-1	reviewed	e4-1	1.000	107	0%	120	27.5%	-	-	-	-	-	-
NLK	51701	genome.wustl.edu	37	17	26370089	26370089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016231.4	+1	validated	p.V64I	0.990	147	0%	174	42%	-	-	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
SLC46A1	113235	genome.wustl.edu	37	17	26727727	26727727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080669.3	-1	reviewed	p.G408C	0.998	54	0%	83	12%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_MFS general substrate transporter
FOXN1	8456	genome.wustl.edu	37	17	26864394	26864394	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003593.2	+1	reviewed	p.T629	0.100	16	0%	21	23.8%	-	-	-	-	-	NULL
ALDOC	230	genome.wustl.edu	37	17	26900841	26900841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005165.2	-1	reviewed	p.R304H	1.000	67	0%	104	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycolytic,superfamily_Aldolase
SPAG5	10615	genome.wustl.edu	37	17	26913461	26913461	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006461.3	-1	reviewed	p.Q498	0.563	179	0%	133	36.8%	-	-	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26948021	26948021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014680.2	-1	validated	p.L1743I	1.000	198	0%	100	29%	-	-	probably_damaging(0.99)	tolerated(0.33)	neutral(0.466)	HMMPfam_Apt1
SUPT6H	6830	genome.wustl.edu	37	17	27015176	27015176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003170.3	+1	validated	p.P1025L	1.000	22	0%	31	48.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PHF12	57649	genome.wustl.edu	37	17	27237197	27237197	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378879	-1	known	p.Y802	0.000	79	0%	89	28.1%	-	-	-	-	-	NULL
PHF12	57649	genome.wustl.edu	37	17	27237240	27237240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000378879	-1	known	p.A788V	0.479	77	0%	107	36.4%	-	-	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
PIPOX	51268	genome.wustl.edu	37	17	27382862	27382862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016518.2	+1	validated	p.R333H	0.377	123	0%	130	28.5%	-	-	benign(0.053)	tolerated(0.61)	neutral(0.007)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
MYO18A	399687	genome.wustl.edu	37	17	27424909	27424909	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_078471.3	-1	validated	p.Y1333	0.018	82	1.2%	135	43.7%	-	-	-	-	-	NULL
ANKRD13B	124930	genome.wustl.edu	37	17	27934859	27934859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152345.4	+1	validated	p.A72T	1.000	9	0.000	23	0.348	-	-	possibly_damaging(0.884)	tolerated(0.06)	deleterious(0.667)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
EFCAB5	374786	genome.wustl.edu	37	17	28417528	28417528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198529.3	+1	validated	p.R1258I	0.520	104	0%	60	36.7%	-	-	benign(0.091)	tolerated(0.16)	neutral(0.066)	NULL
NSRP1	84081	genome.wustl.edu	37	17	28445134	28445134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032141.2	+1	validated	p.L19F	1.000	102	0%	79	31.6%	-	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
CPD	1362	genome.wustl.edu	37	17	28749993	28749993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001304.3	+1	reviewed	p.E537*	1.000	147	0%	52	36.5%	-	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CPD	1362	genome.wustl.edu	37	17	28758863	28758863	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001304.3	+1	reviewed	p.D697	0.998	214	0%	66	36.4%	-	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CPD	1362	genome.wustl.edu	37	17	28791819	28791819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001304.3	+1	reviewed	p.S1377Y	1.000	135	0%	49	10.2%	-	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
ENSG00000247185	0	genome.wustl.edu	37	17	29096093	29096093	+	RNA	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000499895	+1	known	NULL	0.069	45	0%	31	22.6%	-	-	-	-	-	-
CRLF3	51379	genome.wustl.edu	37	17	29120567	29120567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015986.3	-1	validated	p.V243I	0.985	128	0%	113	31.9%	-	-	benign(0.009)	tolerated(0.17)	neutral(0.059)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NF1	4763	genome.wustl.edu	37	17	29422361	29422361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042492.2	+1	reviewed	p.A12T	1.000	6	0.000	11	0.455	-	-	possibly_damaging(0.896)	tolerated(0.33)	neutral(0.378)	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29855769	29855769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032932.3	+1	validated	p.L542	1.000	28	0%	46	39.1%	-	-	-	-	-	NULL
UTP6	55813	genome.wustl.edu	37	17	30190454	30190454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018428.2	-1	validated	p.A573V	1.000	110	0%	155	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUZ12	23512	genome.wustl.edu	37	17	30293190	30293190	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015355.2	+1	reviewed	p.T160	0.998	99	0%	70	30%	-	-	-	-	-	NULL
SUZ12	23512	genome.wustl.edu	37	17	30325795	30325795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015355.2	+1	reviewed	p.D665Y	1.000	67	0%	55	29.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VEFS-Box
LRRC37B	114659	genome.wustl.edu	37	17	30358476	30358476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052888.2	+1	validated	p.L659V	0.002	130	0%	95	43.2%	-	-	benign(0.081)	deleterious(0.02)	neutral(0.389)	HMMSmart_SM00369,superfamily_L domain-like
SPACA3	124912	genome.wustl.edu	37	17	31323985	31323985	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173847.3	+1	provisional	p.P156	0.000	41	0%	37	45.9%	-	-	-	-	-	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
ENSG00000226049	0	genome.wustl.edu	37	17	32364752	32364752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430493	-1	known	p.A656V	1.000	126	0%	135	35.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000226049	0	genome.wustl.edu	37	17	32365108	32365108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430493	-1	known	p.S537	1.000	366	0.3%	412	38.3%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000226049	0	genome.wustl.edu	37	17	32365518	32365518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000430493	-1	known	p.D401Y	1.000	304	0.3%	418	39.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CCL13	6357	genome.wustl.edu	37	17	32683555	32683555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005408.2	+1	reviewed	p.S4A	0.261	211	0%	125	31.2%	-	-	possibly_damaging(0.664)	tolerated(0.22)	neutral(0.277)	NULL
RFFL	117584	genome.wustl.edu	37	17	33348660	33348660	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017368.1	-1	validated	p.K107	1.000	112	0%	83	33.7%	-	-	-	-	-	superfamily_FYVE/PHD zinc finger
RAD51D	5892	genome.wustl.edu	37	17	33444045	33444045	+	Missense_Mutation	SNP	C	C	T	rs141188943	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000357906	-1	known	p.R92H	0.000	55	0%	106	46.2%	-	-	unknown(0)	-	-	NULL
UNC45B	146862	genome.wustl.edu	37	17	33477072	33477072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173167.2	+1	validated	p.D71N	1.000	81	0%	112	42.9%	-	-	benign(0.409)	deleterious(0.02)	deleterious(0.515)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SLFN12	55106	genome.wustl.edu	37	17	33749122	33749122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018042.3	-1	validated	p.R309H	0.046	131	0%	75	30.7%	-	-	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	HMMPfam_AAA_4
SLFN12L	100506736	genome.wustl.edu	37	17	33802344	33802344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145027.1	-1	validated	p.E484D	0.003	173	0%	90	44.4%	-	-	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33807204	33807204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145027.1	-1	validated	p.L38M	0.018	72	0%	47	31.9%	-	-	possibly_damaging(0.951)	tolerated(0.17)	neutral(0.453)	NULL
GAS2L2	246176	genome.wustl.edu	37	17	34072080	34072080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139285.2	-1	validated	p.K812N	0.001	43	0%	88	42%	-	-	unknown(0)	tolerated(0.05)	-	NULL
MYO19	80179	genome.wustl.edu	37	17	34852167	34852167	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025109.5	-1	validated	p.G747	1.000	117	0%	114	36%	-	-	-	-	-	NULL
MYO19	80179	genome.wustl.edu	37	17	34854314	34854314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025109.5	-1	validated	p.P651	0.000	79	0%	104	43.3%	-	-	-	-	-	NULL
MYO19	80179	genome.wustl.edu	37	17	34856750	34856750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025109.5	-1	validated	p.R566H	1.000	26	0%	26	46.2%	-	-	probably_damaging(0.971)	tolerated(0.42)	neutral(0.427)	superfamily_SSF52540
MYO19	80179	genome.wustl.edu	37	17	34856771	34856771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025109.5	-1	validated	p.R559Q	0.917	25	0%	31	19.4%	-	-	benign(0)	tolerated(0.72)	neutral(0.002)	HMMSmart_MYSc,superfamily_SSF52540
MYO19	80179	genome.wustl.edu	37	17	34857026	34857026	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025109.5	-1	validated	p.D510	1.000	45	0%	50	30%	-	-	-	-	-	HMMSmart_MYSc,superfamily_SSF52540
PIGW	284098	genome.wustl.edu	37	17	34894113	34894113	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178517.3	+1	validated	p.L388*	0.016	149	0%	230	38.7%	-	-	-	-	-	HMMPfam_GWT1
LHX1	3975	genome.wustl.edu	37	17	35299554	35299554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005568.2	+1	reviewed	p.G245S	1.000	10	0%	23	26.1%	-	-	benign(0.014)	tolerated(0.05)	neutral(0.346)	NULL
LHX1	3975	genome.wustl.edu	37	17	35300402	35300402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005568.2	+1	reviewed	p.E399K	1.000	4	0.000	14	0.357	-	-	possibly_damaging(0.818)	deleterious(0.01)	deleterious(0.715)	NULL
AATF	26574	genome.wustl.edu	37	17	35346649	35346649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012138.3	+1	reviewed	p.R418Q	0.976	99	0%	47	34%	-	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
ACACA	31	genome.wustl.edu	37	17	35468469	35468469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198834.1	-1	reviewed	p.L2188V	1.000	123	0%	84	28.6%	-	-	possibly_damaging(0.671)	tolerated(0.07)	deleterious(0.557)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
C17orf78	284099	genome.wustl.edu	37	17	35746297	35746297	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173625.3	+1	validated	p.K250	1.000	87	0%	32	34.4%	-	-	-	-	-	NULL
SYNRG	11276	genome.wustl.edu	37	17	35900600	35900600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007247.4	-1	reviewed	p.R1083H	0.997	72	0%	45	15.6%	-	-	possibly_damaging(0.563)	deleterious(0)	deleterious(0.637)	NULL
HNF1B	6928	genome.wustl.edu	37	17	36099476	36099476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000458.2	-1	reviewed	p.A167T	1.000	136	0%	262	36.6%	-	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains
ENSG00000174093	0	genome.wustl.edu	37	17	36352483	36352483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000312412	-1	known	p.A435V	1.000	235	0%	142	12%	-	-	benign(0.11)	tolerated(0.07)	neutral(0.328)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
GPR179	440435	genome.wustl.edu	37	17	36483775	36483775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004334.2	-1	validated	p.D1893N	0.114	99	0%	130	34.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GPR179	440435	genome.wustl.edu	37	17	36484461	36484461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004334.2	-1	validated	p.R1664H	0.000	136	0%	183	35.5%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
GPR179	440435	genome.wustl.edu	37	17	36486480	36486480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004334.2	-1	validated	p.Y991C	0.154	95	0%	135	39.3%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
GPR179	440435	genome.wustl.edu	37	17	36499282	36499282	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004334.2	-1	validated	p.Q131*	1.000	42	0%	61	36.1%	-	-	-	-	-	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36719134	36719134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025248.2	-1	validated	p.I255V	1.000	54	0%	139	38.8%	-	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
PIP4K2B	8396	genome.wustl.edu	37	17	36925984	36925984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003559.4	-1	reviewed	p.S404F	1.000	154	0%	123	11.4%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PIP4K2B	8396	genome.wustl.edu	37	17	36927476	36927476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003559.4	-1	reviewed	p.H286P	0.998	210	0%	148	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PIP4K2B	8396	genome.wustl.edu	37	17	36936744	36936744	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003559.4	-1	reviewed	p.D156	0.993	72	0%	62	32.3%	-	-	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
C17orf98	388381	genome.wustl.edu	37	17	36997446	36997446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080465.2	-1	validated	p.K66I	0.040	42	0%	57	40.4%	-	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	NULL
PGAP3	93210	genome.wustl.edu	37	17	37840897	37840897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033419.3	-1	validated	p.V129M	1.000	34	0%	51	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Per1
CASC3	22794	genome.wustl.edu	37	17	38325656	38325656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007359.4	+1	reviewed	p.R682Q	1.000	57	0%	50	34%	-	-	unknown(0)	deleterious(0)	-	NULL
IGFBP4	3487	genome.wustl.edu	37	17	38610200	38610200	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001552.2	+1	reviewed	p.S176	0.194	104	0%	155	12.3%	-	-	-	-	-	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1
TNS4	84951	genome.wustl.edu	37	17	38634862	38634862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032865.5	-1	validated	p.R650H	0.980	92	0%	97	27.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PTB,superfamily_SSF50729
TNS4	84951	genome.wustl.edu	37	17	38641229	38641229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032865.5	-1	validated	p.K440T	1.000	130	0%	153	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRT20	54474	genome.wustl.edu	37	17	39036970	39036970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019010.1	-1	reviewed	p.L176M	1.000	186	0%	80	13.8%	-	-	possibly_damaging(0.673)	deleterious(0.03)	deleterious(0.603)	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39079267	39079267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015515.3	-1	reviewed	p.V415M	1.000	208	0%	87	18.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KRT23	25984	genome.wustl.edu	37	17	39081739	39081739	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015515.3	-1	reviewed	p.E337*	1.000	252	0%	101	13.9%	-	-	-	-	-	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39118685	39118685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213656.3	-1	reviewed	p.R280H	1.000	262	0.4%	93	34.4%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39122653	39122653	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213656.3	-1	reviewed	p.E152	0.999	139	0%	76	40.8%	-	-	-	-	-	HMMPfam_Filament
KRT40	125115	genome.wustl.edu	37	17	39139310	39139310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182497.3	-1	reviewed	p.D173G	1.000	125	0%	61	36.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Filament
KRTAP4-9	100132386	genome.wustl.edu	37	17	39261794	39261794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000391415	+1	known	p.P52S	0.001	94	0%	90	27.8%	-	-	unknown(0)	deleterious(0.05)	-	HMMPfam_Keratin_B2
KRTAP9-3	83900	genome.wustl.edu	37	17	39389169	39389169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031962.2	+1	reviewed	p.C139Y	0.971	174	0.6%	172	9.9%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Keratin_B2
KRT33A	3883	genome.wustl.edu	37	17	39503420	39503420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004138.2	-1	reviewed	p.A215T	1.000	104	0%	155	36.8%	-	-	benign(0.035)	tolerated(0.09)	neutral(0.298)	HMMPfam_Filament
KRT34	3885	genome.wustl.edu	37	17	39535425	39535425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021013.3	-1	reviewed	p.D336Y	0.955	117	0%	146	39.7%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_Filament
KRT34	3885	genome.wustl.edu	37	17	39538488	39538488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021013.3	-1	reviewed	p.S46N	0.039	65	0%	115	29.6%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
KRT31	3881	genome.wustl.edu	37	17	39552779	39552779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002277.2	-1	reviewed	p.G161S	0.002	82	0%	84	42.9%	-	-	benign(0.043)	deleterious(0.05)	neutral(0.348)	HMMPfam_Filament
KRT38	8687	genome.wustl.edu	37	17	39596454	39596454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006771.3	-1	reviewed	p.Q178H	0.000	165	0.6%	124	41.1%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Filament
KRT32	3882	genome.wustl.edu	37	17	39622125	39622125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002278.3	-1	reviewed	p.R203H	0.980	99	0%	81	29.6%	-	-	possibly_damaging(0.478)	tolerated(0.08)	neutral(0.458)	HMMPfam_Filament
KRT19	3880	genome.wustl.edu	37	17	39680701	39680701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002276.4	-1	reviewed	p.D251G	0.998	46	0%	95	33.7%	-	-	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	superfamily_Prefoldin,HMMPfam_Filament
KRT14	3861	genome.wustl.edu	37	17	39741227	39741227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000526.4	-1	reviewed	p.K203T	1.000	82	0%	131	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
HAP1	9001	genome.wustl.edu	37	17	39881320	39881320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177977.2	-1	reviewed	p.R498Q	0.000	84	0%	136	34.6%	-	-	possibly_damaging(0.906)	tolerated(0.34)	neutral(0.383)	NULL
JUP	3728	genome.wustl.edu	37	17	39921270	39921270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002230.2	-1	reviewed	p.R320H	1.000	112	0%	170	38.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ARM,superfamily_ARM-type_fold
KLHL11	55175	genome.wustl.edu	37	17	40010739	40010739	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018143.1	-1	provisional	p.G460	0.836	109	0%	62	45.2%	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ACLY	47	genome.wustl.edu	37	17	40061802	40061802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001096.2	-1	reviewed	p.L326I	1.000	190	0%	218	12.8%	-	-	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	superfamily_CoA_ligase
ACLY	47	genome.wustl.edu	37	17	40065905	40065905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001096.2	-1	reviewed	p.V132I	0.968	125	0%	159	32.1%	-	-	benign(0)	tolerated(1)	-	superfamily_SSF56059
KAT2A	2648	genome.wustl.edu	37	17	40266994	40266994	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021078.2	-1	validated	p.Y645	0.819	94	0%	226	41.2%	-	-	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
STAT5A	6776	genome.wustl.edu	37	17	40453292	40453292	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003152.3	+1	reviewed	e8-1	1.000	111	0%	165	36.4%	-	-	-	-	-	-
HSD17B1	3292	genome.wustl.edu	37	17	40705242	40705242	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000413.2	+1	validated	p.D66	0.970	13	0%	34	23.5%	-	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
TUBG2	27175	genome.wustl.edu	37	17	40817774	40817774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016437.2	+1	validated	p.A258T	1.000	223	0%	350	43.7%	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
PLEKHH3	79990	genome.wustl.edu	37	17	40821953	40821953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024927.4	-1	validated	p.V666I	1.000	32	0%	71	38%	-	-	possibly_damaging(0.444)	deleterious(0.02)	deleterious(0.528)	NULL
CCR10	2826	genome.wustl.edu	37	17	40832398	40832398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016602.2	-1	validated	p.D88N	1.000	16	0%	23	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
AOC2	314	genome.wustl.edu	37	17	41001166	41001166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_009590.2	+1	reviewed	p.P551L	0.997	51	0%	90	32.2%	-	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
AOC3	8639	genome.wustl.edu	37	17	41006590	41006590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003734.2	+1	reviewed	p.A576T	0.994	23	0%	32	40.6%	-	-	benign(0.15)	tolerated(0.12)	neutral(0.274)	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase
LOC100288228	100288228	genome.wustl.edu	37	17	41020861	41020861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343520.1	-1	model	p.A59T	0.357	26	0%	42	26.2%	-	-	-	-	-	NULL
AARSD1	80755	genome.wustl.edu	37	17	41122314	41122314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136042.2	-1	validated	p.D185Y	1.000	215	0%	252	31%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
NAGS	162417	genome.wustl.edu	37	17	42083445	42083445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153006.2	+1	reviewed	p.S252L	1.000	7	0.000	14	0.643	-	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_Aa_kinase
TMEM101	84336	genome.wustl.edu	37	17	42090429	42090429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032376.2	-1	provisional	p.R138H	1.000	16	0%	29	41.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ATXN7L3	56970	genome.wustl.edu	37	17	42274714	42274714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020218.1	-1	validated	p.K80Q	1.000	38	0%	111	46.8%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
GRN	2896	genome.wustl.edu	37	17	42428809	42428809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002087.2	+1	reviewed	p.G305D	1.000	50	0%	99	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Granulin,HMMSmart_SM00277,superfamily_Granulin repeat
ITGA2B	3674	genome.wustl.edu	37	17	42455070	42455070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000419.3	-1	reviewed	p.A728V	0.002	64	0%	114	40.4%	-	-	benign(0.114)	deleterious(0.01)	neutral(0.415)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
GPATCH8	23131	genome.wustl.edu	37	17	42478354	42478354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002909.1	-1	validated	p.P364H	0.592	82	0%	101	14.9%	-	-	unknown(0)	deleterious(0)	-	NULL
CCDC43	124808	genome.wustl.edu	37	17	42756273	42756273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144609.2	-1	validated	p.R209H	1.000	221	0%	109	39.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
GFAP	2670	genome.wustl.edu	37	17	42987858	42987858	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000376990	-1	known	p.F432	0.000	50	0%	99	38.4%	-	-	-	-	-	NULL
GFAP	2670	genome.wustl.edu	37	17	42990667	42990667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002055.3	-1	reviewed	p.M250I	1.000	56	0%	100	41%	-	-	probably_damaging(0.977)	tolerated(0.71)	neutral(0.420)	HMMPfam_Filament
KIF18B	146909	genome.wustl.edu	37	17	43003782	43003782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080443.1	-1	provisional	p.E821K	1.000	99	0%	165	32.1%	-	-	unknown(0)	-	-	NULL
HEXIM1	10614	genome.wustl.edu	37	17	43227438	43227438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006460.2	+1	reviewed	p.L294P	1.000	28	0%	44	45.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FMNL1	752	genome.wustl.edu	37	17	43311014	43311014	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005892.3	+1	reviewed	e5-1	1.000	67	0%	166	26.5%	-	-	-	-	-	-
FMNL1	752	genome.wustl.edu	37	17	43323034	43323034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005892.3	+1	reviewed	p.E976D	1.000	59	0%	134	39.6%	-	-	unknown(0)	tolerated(0.16)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
MAP3K14	9020	genome.wustl.edu	37	17	43351887	43351887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000344686	-1	known	p.L454S	0.998	92	0%	124	37.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLEKHM1	9842	genome.wustl.edu	37	17	43535636	43535636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014798.2	-1	reviewed	p.A493V	0.021	54	0%	59	37.3%	-	-	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	NULL
LOC100288229	100288229	genome.wustl.edu	37	17	43626447	43626447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343565.1	-1	model	p.L419F	0.000	64	0%	44	9.1%	-	-	-	-	-	NULL
STH	246744	genome.wustl.edu	37	17	44077018	44077018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007532.2	+1	validated	p.S125A	0.000	26	3.8%	37	35.1%	-	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44248614	44248614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015443.2	-1	validated	p.R299H	1.000	112	0%	76	14.5%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44249056	44249056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015443.2	-1	validated	p.A152S	1.000	110	0%	50	14%	-	-	possibly_damaging(0.9)	deleterious(0.03)	deleterious(0.721)	NULL
LOC644253	644253	genome.wustl.edu	37	17	44322077	44322077	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001719157.2	+1	model	p.T312	0.994	45	0%	72	27.8%	-	-	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
WNT3	7473	genome.wustl.edu	37	17	44846064	44846064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030753.3	-1	reviewed	p.I230	0.992	54	0%	87	40.2%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
OSBPL7	114881	genome.wustl.edu	37	17	45894656	45894656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145798.2	-1	reviewed	p.R223Q	0.981	50	0%	117	33.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
HOXB13	10481	genome.wustl.edu	37	17	46804268	46804268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006361.5	-1	reviewed	p.R247C	1.000	76	0%	147	28.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HOXB13	10481	genome.wustl.edu	37	17	46805825	46805825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006361.5	-1	reviewed	p.P44H	0.947	15	0%	17	29.4%	-	-	probably_damaging(0.974)	tolerated(0.19)	neutral(0.465)	NULL
IGF2BP1	10642	genome.wustl.edu	37	17	47115763	47115763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006546.3	+1	reviewed	p.G212D	1.000	22	0%	24	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PHB	5245	genome.wustl.edu	37	17	47482547	47482547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002634.2	-1	reviewed	p.A209V	1.000	9	0.000	23	0.870	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
NGFR	4804	genome.wustl.edu	37	17	47589259	47589259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002507.3	+1	reviewed	p.N276S	1.000	34	0%	79	29.1%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
NXPH3	11248	genome.wustl.edu	37	17	47656197	47656197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007225.2	+1	validated	p.K98N	1.000	38	2.6%	79	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neurexophilin
SPOP	8405	genome.wustl.edu	37	17	47700132	47700132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007226.1	-1	reviewed	p.S14L	1.000	98	0%	72	31.9%	-	-	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
ITGA3	3675	genome.wustl.edu	37	17	48152836	48152836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005501.2	+1	reviewed	p.L495M	1.000	81	0%	169	14.8%	-	-	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
COL1A1	1277	genome.wustl.edu	37	17	48266152	48266152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000088.3	-1	reviewed	p.A1017V	0.991	75	0%	153	11.8%	-	-	unknown(0)	tolerated(0.11)	-	HMMPfam_Collagen
XYLT2	64132	genome.wustl.edu	37	17	48434012	48434012	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022167.2	+1	reviewed	p.Y541	0.681	37	0%	72	37.5%	-	-	-	-	-	NULL
CHAD	1101	genome.wustl.edu	37	17	48543159	48543159	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001267.2	-1	reviewed	p.L283	0.997	162	0%	226	36.3%	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
MYCBPAP	84073	genome.wustl.edu	37	17	48599412	48599412	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000437498	+1	known	p.A427V	0.984	67	0%	97	42.3%	-	-	-	-	-	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48693729	48693729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018896.3	+1	validated	p.R1669W	0.918	191	0%	319	39.5%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ABCC3	8714	genome.wustl.edu	37	17	48761338	48761338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003786.3	+1	reviewed	p.G1328D	1.000	34	0%	55	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD40	91369	genome.wustl.edu	37	17	48773491	48773491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052855.3	-1	validated	p.A325V	1.000	123	0%	80	40%	-	-	benign(0.382)	tolerated(0.14)	neutral(0.371)	NULL
COX11	1353	genome.wustl.edu	37	17	53045893	53045893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004375.3	-1	reviewed	p.E39*	0.000	11	0%	14	42.9%	-	-	-	-	-	NULL
STXBP4	252983	genome.wustl.edu	37	17	53155527	53155527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178509.5	+1	validated	p.S426F	1.000	84	0%	28	39.3%	-	-	possibly_damaging(0.492)	deleterious(0)	deleterious(0.609)	NULL
MMD	23531	genome.wustl.edu	37	17	53478885	53478885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012329.2	-1	reviewed	p.E154A	1.000	115	0%	75	29.3%	-	-	possibly_damaging(0.551)	deleterious(0)	deleterious(0.632)	HMMPfam_HlyIII
AKAP1	8165	genome.wustl.edu	37	17	55183105	55183105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003488.3	+1	reviewed	p.A94T	0.172	64	0%	86	38.4%	-	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
OR4D1	26689	genome.wustl.edu	37	17	56232571	56232571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012374.1	+1	provisional	p.Q19H	0.001	85	0%	126	37.3%	-	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	superfamily_SSF81321
EPX	8288	genome.wustl.edu	37	17	56271112	56271112	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000502.4	+1	reviewed	p.Q128	0.986	19	0%	25	24%	-	-	-	-	-	NULL
EPX	8288	genome.wustl.edu	37	17	56271379	56271379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000502.4	+1	reviewed	p.E174K	0.585	18	0%	21	38.1%	-	-	benign(0.147)	tolerated(0.12)	neutral(0.274)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
BZRAP1	9256	genome.wustl.edu	37	17	56393433	56393433	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004758.2	-1	validated	p.G683	1.000	140	0%	245	38.8%	-	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
HSF5	124535	genome.wustl.edu	37	17	56565368	56565368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080439.1	-1	provisional	p.R90C	1.000	21	0%	51	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_HSF_DNA-bind,HMMSmart_SM00415,superfamily_""Winged helix"" DNA-binding domain"
MTMR4	9110	genome.wustl.edu	37	17	56581491	56581491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004687.4	-1	validated	p.R526W	1.000	63	0%	53	37.7%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_(Phosphotyrosine protein) phosphatases II
C17orf47	284083	genome.wustl.edu	37	17	56620976	56620976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001038704.1	-1	predicted	p.R191H	0.918	167	0%	84	28.6%	-	-	probably_damaging(0.984)	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56646569	56646569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198393.2	-1	reviewed	p.E1330D	0.391	200	0%	92	35.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TEX14	56155	genome.wustl.edu	37	17	56659084	56659084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198393.2	-1	reviewed	p.S1060Y	0.010	191	0%	76	28.9%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
TEX14	56155	genome.wustl.edu	37	17	56682443	56682443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198393.2	-1	reviewed	p.T411M	0.000	189	0%	125	33.6%	-	-	possibly_damaging(0.771)	deleterious(0.05)	deleterious(0.632)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
SMG8	55181	genome.wustl.edu	37	17	57288544	57288544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018149.6	+1	validated	p.R378*	1.000	82	0%	80	35%	-	-	-	-	-	HMMPfam_DUF2146
CLTC	1213	genome.wustl.edu	37	17	57758332	57758332	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004859.3	+1	reviewed	p.K993	1.000	148	0%	32	18.8%	-	-	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
MIR21	406991	genome.wustl.edu	37	17	57918630	57918630	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000362134	+1	known	NULL	1.000	121	0%	68	38.2%	-	-	-	-	-	-
HEATR6	63897	genome.wustl.edu	37	17	58134499	58134499	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022070.4	-1	validated	p.L663	0.997	65	0%	26	34.6%	-	-	-	-	-	superfamily_ARM-type_fold
CA4	762	genome.wustl.edu	37	17	58234905	58234905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000717.3	+1	reviewed	p.S129I	0.243	77	0%	103	44.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1
USP32	84669	genome.wustl.edu	37	17	58275675	58275675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032582.3	-1	validated	p.S1127F	1.000	208	0%	103	39.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_UCH,superfamily_SSF54001
APPBP2	10513	genome.wustl.edu	37	17	58556624	58556624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006380.2	-1	reviewed	p.L130I	1.000	65	0%	32	31.2%	-	-	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	superfamily_TPR-like
PPM1D	8493	genome.wustl.edu	37	17	58740370	58740370	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003620.2	+1	reviewed	p.D425	0.967	109	0%	60	25%	-	-	-	-	-	NULL
PPM1D	8493	genome.wustl.edu	37	17	58740814	58740814	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003620.2	+1	reviewed	p.K573	1.000	94	0%	50	38%	-	-	-	-	-	NULL
TBX2	6909	genome.wustl.edu	37	17	59485480	59485480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005994.3	+1	validated	p.A584	0.701	21	0%	36	33.3%	-	-	-	-	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59857697	59857697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032043.1	-1	reviewed	p.M620I	1.000	101	0%	50	34%	-	-	possibly_damaging(0.825)	tolerated(0.08)	deleterious(0.613)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59858343	59858343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032043.1	-1	reviewed	p.A551V	1.000	129	0%	103	37.9%	-	-	probably_damaging(0.999)	tolerated(0.49)	deleterious(0.501)	NULL
LOC100289325	100289325	genome.wustl.edu	37	17	60005137	60005137	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343535.1	+1	model	p.T40	0.003	31	0%	49	22.4%	-	-	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60111236	60111236	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005121.2	-1	reviewed	p.I242	0.997	257	0%	124	39.5%	-	-	-	-	-	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60344512	60344512	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000339120	-1	known	p.S303	0.859	139	0%	174	34.5%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_TBC
EFCAB3	146779	genome.wustl.edu	37	17	60493568	60493568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144933.1	+1	validated	p.A451T	0.799	138	0%	58	43.1%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
MRC2	9902	genome.wustl.edu	37	17	60744839	60744839	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006039.3	+1	validated	p.A354	0.041	11	0%	21	42.9%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
MARCH10	162333	genome.wustl.edu	37	17	60813461	60813461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100875.1	-1	validated	p.H590Y	0.005	69	0%	40	32.5%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
MARCH10	162333	genome.wustl.edu	37	17	60865954	60865954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001100875.1	-1	validated	p.L33M	1.000	171	0%	229	34.9%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
TANC2	26115	genome.wustl.edu	37	17	61466954	61466954	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000434668	+1	known	p.R960*	0.000	24	0.000	8	0.500	-	-	-	-	-	superfamily_ANK
CYB561	1534	genome.wustl.edu	37	17	61512533	61512533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017916.1	-1	validated	p.Q159H	1.000	37	0%	62	29%	-	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_Cytochrom_B561,HMMSmart_SM00665
LOC342541	342541	genome.wustl.edu	37	17	61549016	61549016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_292596.4	+1	model	p.V23I	0.989	53	0%	44	27.3%	-	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
ACE	1636	genome.wustl.edu	37	17	61566369	61566369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000789.2	+1	reviewed	p.E839D	0.997	61	0%	137	28.5%	-	-	possibly_damaging(0.838)	tolerated(0.37)	neutral(0.339)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNH6	81033	genome.wustl.edu	37	17	61615609	61615609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030779.2	+1	reviewed	p.G562D	1.000	49	0%	95	13.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_cAMP-binding domain-like
DDX42	11325	genome.wustl.edu	37	17	61888507	61888507	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007372.2	+1	reviewed	p.R458*	1.000	110	0%	57	29.8%	-	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GH1	2688	genome.wustl.edu	37	17	61995761	61995761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000515.3	-1	reviewed	p.A39V	0.993	190	0%	199	34.7%	-	-	benign(0.355)	deleterious(0.02)	deleterious(0.495)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
SCN4A	6329	genome.wustl.edu	37	17	62034738	62034738	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000334.4	-1	reviewed	p.Q720	1.000	135	0%	215	47%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN4A	6329	genome.wustl.edu	37	17	62045541	62045541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000334.4	-1	reviewed	p.T293M	0.547	182	0%	266	39.1%	-	-	possibly_damaging(0.898)	deleterious(0.01)	deleterious(0.760)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN4A	6329	genome.wustl.edu	37	17	62049748	62049748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000334.4	-1	reviewed	p.V119A	0.055	106	0.9%	195	32.3%	-	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	superfamily_Voltage-gated potassium channels
ICAM2	3384	genome.wustl.edu	37	17	62081149	62081149	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000873.3	-1	reviewed	p.P168	0.000	62	0%	74	44.6%	-	-	-	-	-	superfamily_Immunoglobulin
CEP95	90799	genome.wustl.edu	37	17	62529282	62529282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138363.1	+1	provisional	p.K630N	1.000	148	0%	55	36.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
LOC146880	146880	genome.wustl.edu	37	17	62745985	62745985	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026899.1	-1	validated	NULL	1.000	47	0%	34	38.2%	-	-	-	-	-	-
ENSG00000215769	0	genome.wustl.edu	37	17	62750261	62750261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000400873	-1	known	p.L157M	1.000	150	0%	92	14.1%	-	-	unknown(0)	tolerated(0.19)	-	NULL
GNA13	10672	genome.wustl.edu	37	17	63010389	63010389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006572.4	-1	validated	p.L374I	1.000	107	0%	48	29.2%	-	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	HMMPfam_G-alpha,HMMSmart_SM00275
HELZ	9931	genome.wustl.edu	37	17	65104694	65104694	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014877.3	-1	validated	p.P1546	0.254	270	0%	120	25%	-	-	-	-	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65147221	65147221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014877.3	-1	validated	p.R766Q	1.000	140	0%	44	34.1%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF52540
PITPNC1	26207	genome.wustl.edu	37	17	65628318	65628318	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012417.2	+1	reviewed	p.C142	0.877	178	0%	148	31.8%	-	-	-	-	-	HMMPfam_IP_trans,superfamily_Bet v1-like
PITPNC1	26207	genome.wustl.edu	37	17	65688720	65688720	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012417.2	+1	reviewed	p.R239*	1.000	129	0%	88	29.5%	-	-	-	-	-	HMMPfam_IP_trans,superfamily_Bet v1-like
NOL11	25926	genome.wustl.edu	37	17	65722731	65722731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015462.3	+1	provisional	p.A274T	0.989	100	0%	68	25%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BPTF	2186	genome.wustl.edu	37	17	65916139	65916139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182641.3	+1	reviewed	p.E1813K	1.000	201	0%	112	32.1%	-	-	possibly_damaging(0.801)	deleterious(0.01)	deleterious(0.707)	NULL
BPTF	2186	genome.wustl.edu	37	17	65925499	65925499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182641.3	+1	reviewed	p.T2016A	0.923	225	0%	159	33.3%	-	-	benign(0.137)	tolerated(0.75)	neutral(0.013)	NULL
ARSG	22901	genome.wustl.edu	37	17	66416527	66416527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014960.3	+1	validated	p.A501T	0.836	86	0%	55	43.6%	-	-	possibly_damaging(0.936)	tolerated(0.18)	neutral(0.438)	superfamily_Alkaline_phosphatase_core
WIPI1	55062	genome.wustl.edu	37	17	66440641	66440641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017983.5	-1	validated	p.N141K	1.000	234	0%	150	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
FAM20A	54757	genome.wustl.edu	37	17	66536067	66536067	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017565.3	-1	validated	p.F420	0.976	131	0%	61	36.1%	-	-	-	-	-	HMMPfam_DUF1193
ABCA8	10351	genome.wustl.edu	37	17	66928495	66928495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007168.2	-1	reviewed	p.V244A	0.164	177	0%	53	34%	-	-	possibly_damaging(0.681)	deleterious(0.04)	deleterious(0.592)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66933095	66933095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007168.2	-1	reviewed	p.T155A	0.007	143	0%	47	40.4%	-	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67310465	67310465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018672.3	-1	reviewed	p.S31I	1.000	129	0%	37	29.7%	-	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
MAP2K6	5608	genome.wustl.edu	37	17	67515461	67515461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002758.3	+1	reviewed	p.R85Q	1.000	127	0%	45	44.4%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNJ2	3759	genome.wustl.edu	37	17	68171419	68171419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000891.2	+1	reviewed	p.R80H	1.000	85	0%	72	37.5%	-	-	possibly_damaging(0.637)	deleterious(0)	deleterious(0.667)	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
KCNJ2	3759	genome.wustl.edu	37	17	68172103	68172103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000891.2	+1	reviewed	p.T308M	1.000	83	0%	49	38.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_IRK,superfamily_E set domains
SOX9	6662	genome.wustl.edu	37	17	70118882	70118882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000346.3	+1	reviewed	p.R152W	1.000	18	0%	45	31.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SOX9	6662	genome.wustl.edu	37	17	70119856	70119856	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000346.3	+1	reviewed	p.I286	0.988	22	0%	34	20.6%	-	-	-	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71357915	71357915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144952.1	-1	provisional	p.A1792V	0.999	35	0%	94	37.2%	-	-	benign(0.02)	tolerated(0.42)	neutral(0.015)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK2	54549	genome.wustl.edu	37	17	71380057	71380057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144952.1	-1	provisional	p.R1555*	0.381	80	0%	126	37.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK2	54549	genome.wustl.edu	37	17	71427644	71427644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144952.1	-1	provisional	p.W493R	0.998	43	0%	69	11.6%	-	-	possibly_damaging(0.95)	deleterious(0.04)	deleterious(0.742)	HMMSmart_SM00409
KIF19	124602	genome.wustl.edu	37	17	72339281	72339281	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153209.3	+1	validated	p.V146	0.996	33	0%	67	16.4%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPRC5C	55890	genome.wustl.edu	37	17	72436495	72436495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022036.2	+1	reviewed	p.A239T	0.003	25	0%	66	33.3%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_7tm_3
CD300A	11314	genome.wustl.edu	37	17	72469853	72469853	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007261.2	+1	validated	p.G73	0.961	161	0%	184	37%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
FDXR	2232	genome.wustl.edu	37	17	72868348	72868348	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000413947	-1	known	p.K58T	0.002	33	0%	41	39%	-	-	possibly_damaging(0.602)	tolerated(0.08)	deleterious(0.508)	superfamily_Nucleotide-binding domain
C17orf28	283987	genome.wustl.edu	37	17	72950424	72950424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030630.2	-1	validated	p.R558H	1.000	76	0%	156	35.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hid1
C17orf28	283987	genome.wustl.edu	37	17	72956279	72956279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030630.2	-1	validated	p.G265R	1.000	54	0%	100	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hid1
CDR2L	30850	genome.wustl.edu	37	17	72999975	72999975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014603.2	+1	validated	p.R402C	0.910	27	0%	39	38.5%	-	-	possibly_damaging(0.672)	tolerated(0.05)	deleterious(0.583)	NULL
ICT1	3396	genome.wustl.edu	37	17	73017032	73017032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001545.1	+1	reviewed	p.R185W	1.000	80	0%	119	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RF-1
HN1	51155	genome.wustl.edu	37	17	73143673	73143673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002032.1	-1	validated	p.S92F	0.961	53	0%	65	43.1%	-	-	benign(0.273)	tolerated(0.08)	neutral(0.329)	NULL
GGA3	23163	genome.wustl.edu	37	17	73235932	73235932	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138619.2	-1	reviewed	p.A507	0.000	21	0%	45	33.3%	-	-	-	-	-	NULL
CASKIN2	57513	genome.wustl.edu	37	17	73502916	73502916	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020753.3	-1	validated	p.T150	0.028	133	0%	255	35.3%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RECQL5	9400	genome.wustl.edu	37	17	73627235	73627235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004259.5	-1	validated	p.R515C	1.000	39	0%	100	19%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGB4	3691	genome.wustl.edu	37	17	73736931	73736931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000213.3	+1	reviewed	p.R870W	1.000	26	0%	53	43.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGB4	3691	genome.wustl.edu	37	17	73746856	73746856	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000213.3	+1	reviewed	p.C1190	1.000	33	0%	61	11.5%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
UNK	85451	genome.wustl.edu	37	17	73815803	73815803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080419.1	+1	provisional	p.V605M	1.000	88	1.1%	153	29.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UNC13D	201294	genome.wustl.edu	37	17	73838671	73838671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199242.2	-1	reviewed	p.L138M	1.000	15	0%	39	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
WBP2	23558	genome.wustl.edu	37	17	73845696	73845696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012478.3	-1	reviewed	p.A98V	1.000	110	0%	230	34.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM47	91107	genome.wustl.edu	37	17	73870764	73870764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033452.2	-1	validated	p.R573W	1.000	29	0%	65	43.1%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
TRIM47	91107	genome.wustl.edu	37	17	73872484	73872484	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033452.2	-1	validated	p.G287	0.999	19	0%	48	39.6%	-	-	-	-	-	NULL
EVPL	2125	genome.wustl.edu	37	17	74003665	74003665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001988.2	-1	validated	p.R1874H	0.975	58	0%	105	39%	-	-	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
EVPL	2125	genome.wustl.edu	37	17	74006622	74006622	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001988.2	-1	validated	p.K888	0.996	35	0%	61	36.1%	-	-	-	-	-	NULL
RNF157	114804	genome.wustl.edu	37	17	74151388	74151388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052916.2	-1	validated	p.A570V	0.071	22	0%	38	42.1%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74274150	74274150	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032134.1	-1	provisional	p.F1513	0.568	54	0%	122	35.2%	-	-	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74300527	74300527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032134.1	-1	provisional	p.A59V	0.435	20	0%	76	39.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE2O	63893	genome.wustl.edu	37	17	74398172	74398172	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022066.3	-1	validated	p.Y241	0.974	26	0%	52	50%	-	-	-	-	-	NULL
SEC14L1	6397	genome.wustl.edu	37	17	75196626	75196626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039573.2	+1	reviewed	p.A294T	1.000	123	0%	112	33%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
C17orf99	100141515	genome.wustl.edu	37	17	76162048	76162048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000340363	+1	known	p.R240H	0.000	50	0%	134	35.8%	-	-	benign(0)	-	-	NULL
LOC283999	283999	genome.wustl.edu	37	17	76236026	76236026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145529.1	+1	provisional	p.D386N	0.000	13	0%	39	38.5%	-	-	unknown(0)	-	-	NULL
PGS1	9489	genome.wustl.edu	37	17	76395605	76395605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024419.3	+1	provisional	p.V230I	0.902	55	0%	85	40%	-	-	benign(0.061)	tolerated(0.14)	neutral(0.254)	HMMPfam_PLDc,superfamily_Phospholipase D/nuclease
DNAH17	8632	genome.wustl.edu	37	17	76472660	76472660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.F2702L	1.000	196	0%	292	40.4%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76488760	76488760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.E2152K	1.000	62	0%	164	42.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76502885	76502885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.K1570E	0.999	95	0%	137	27.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH17	8632	genome.wustl.edu	37	17	76503450	76503450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.A1525V	0.643	66	0%	100	10%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_DHC_N2
DNAH17	8632	genome.wustl.edu	37	17	76547686	76547686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.I774M	0.003	218	0%	244	40.2%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76548857	76548857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000389840	-1	known	p.L737I	0.831	195	0%	160	38.8%	-	-	benign(0.021)	deleterious(0.05)	neutral(0.346)	HMMPfam_DHC_N1
CYTH1	9267	genome.wustl.edu	37	17	76672181	76672181	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004762.2	-1	reviewed	p.R397*	1.000	67	1.5%	98	11.2%	-	-	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76817116	76817116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025090.3	-1	validated	p.S262L	1.000	40	0%	48	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
TIMP2	7077	genome.wustl.edu	37	17	76851839	76851839	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003255.4	-1	reviewed	p.F191	0.991	46	0%	65	38.5%	-	-	-	-	-	HMMPfam_TIMP,HMMSmart_NTR,superfamily_TIMP_like
LGALS3BP	3959	genome.wustl.edu	37	17	76967841	76967841	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005567.3	-1	reviewed	p.L525	0.988	56	0%	124	37.9%	-	-	-	-	-	NULL
C1QTNF1	114897	genome.wustl.edu	37	17	77042644	77042644	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030968.2	+1	validated	p.E55*	0.781	37	0%	61	29.5%	-	-	-	-	-	NULL
ENGASE	64772	genome.wustl.edu	37	17	77073797	77073797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042573.1	+1	validated	p.S89	0.001	96	0%	170	17.1%	-	-	-	-	-	NULL
ENPP7	339221	genome.wustl.edu	37	17	77709444	77709444	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178543.3	+1	validated	p.S334	0.325	28	0%	56	46.4%	-	-	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
CBX8	57332	genome.wustl.edu	37	17	77769893	77769893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020649.2	-1	validated	p.K70R	1.000	103	0%	201	37.3%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	superfamily_Chromodomain-like
TBC1D16	125058	genome.wustl.edu	37	17	77925284	77925284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019020.2	-1	provisional	p.W352R	1.000	53	0%	107	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78014006	78014006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017950.2	+1	validated	p.H163	0.000	36	0%	68	27.9%	-	-	-	-	-	NULL
SGSH	6448	genome.wustl.edu	37	17	78184305	78184305	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000199.3	-1	reviewed	p.G485	0.045	36	0%	70	40%	-	-	-	-	-	superfamily_Alkaline_phosphatase_core
RNF213	57674	genome.wustl.edu	37	17	78307920	78307920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000508628	+1	known	p.D1387N	0.000	89	0%	90	38.9%	-	-	benign(0.021)	tolerated(0.28)	neutral(0.033)	NULL
RNF213	57674	genome.wustl.edu	37	17	78310294	78310294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000411702	+1	known	p.R1597H	0.000	18	0%	23	30.4%	-	-	unknown(0)	deleterious(0)	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78363970	78363970	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000508628	+1	known	p.T5148	0.000	61	0%	57	24.6%	-	-	-	-	-	NULL
RPTOR	57521	genome.wustl.edu	37	17	78811749	78811749	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020761.2	+1	reviewed	p.I388	0.809	48	0%	126	37.3%	-	-	-	-	-	NULL
AZI1	22994	genome.wustl.edu	37	17	79166536	79166536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014984.2	-1	validated	p.R810M	1.000	7	0.000	9	0.778	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
AZI1	22994	genome.wustl.edu	37	17	79177380	79177380	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014984.2	-1	validated	p.C181	0.090	42	0%	97	34%	-	-	-	-	-	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79220055	79220055	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037984.1	-1	validated	p.G887	0.000	25	0%	54	48.1%	-	-	-	-	-	NULL
LINC00482	284185	genome.wustl.edu	37	17	79278436	79278436	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178519.2	-1	predicted	p.C243	0.002	63	0%	110	11.8%	-	-	-	-	-	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79428027	79428027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436173	+1	known	p.S2113I	0.979	8	0.000	14	0.286	-	-	benign(0.303)	deleterious(0.01)	deleterious(0.500)	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79428242	79428242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436173	+1	known	p.R2185W	0.890	10	0%	28	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79429871	79429871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000436173	+1	known	p.R2497W	0.947	51	0%	105	41%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAH,HMMSmart_SM00439
NPLOC4	55666	genome.wustl.edu	37	17	79563180	79563180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017921.2	-1	validated	p.G361V	1.000	65	0%	78	32.1%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_NPL4
TSPAN10	83882	genome.wustl.edu	37	17	79612579	79612579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000328585	+1	known	p.R200C	0.993	18	0%	49	46.9%	-	-	benign(0.016)	tolerated(0.1)	neutral(0.287)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
HGS	9146	genome.wustl.edu	37	17	79663480	79663480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004712.3	+1	provisional	p.R496H	1.000	12	0%	27	29.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM195B	348262	genome.wustl.edu	37	17	79782161	79782161	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001093767.1	-1	validated	e2+2	0.991	37	0%	83	43.4%	-	-	-	-	-	-
PPP1R27	116729	genome.wustl.edu	37	17	79792402	79792402	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007533.3	-1	validated	p.S106	0.243	68	0%	180	36.7%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASPSCR1	79058	genome.wustl.edu	37	17	79954311	79954311	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024083.2	+1	reviewed	p.C174	0.000	8	0.000	25	0.320	-	-	-	-	-	NULL
DUS1L	64118	genome.wustl.edu	37	17	80019498	80019498	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022156.3	-1	validated	p.S231	0.996	36	0%	86	36%	-	-	-	-	-	HMMPfam_Dus,superfamily_SSF51395
SECTM1	6398	genome.wustl.edu	37	17	80280762	80280762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003004.2	-1	reviewed	p.R177C	0.001	13	0%	36	55.6%	-	-	benign(0.053)	deleterious(0.03)	neutral(0.368)	NULL
FN3K	64122	genome.wustl.edu	37	17	80696414	80696414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022158.3	+1	validated	p.S64I	0.000	84	0%	199	38.7%	-	-	benign(0.119)	tolerated(0.16)	neutral(0.069)	superfamily_Kinase_like,HMMPfam_Fructosamin_kin
TBCD	6904	genome.wustl.edu	37	17	80763759	80763759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005993.4	+1	reviewed	p.R320H	1.000	42	2.4%	97	37.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
TBCD	6904	genome.wustl.edu	37	17	80890580	80890580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005993.4	+1	reviewed	p.G1054S	0.964	34	0%	110	30%	-	-	possibly_damaging(0.735)	tolerated(0.16)	neutral(0.328)	superfamily_ARM repeat
COLEC12	81035	genome.wustl.edu	37	18	347000	347000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130386.2	-1	validated	p.N208D	1.000	128	0%	75	36%	-	-	unknown(0)	-	-	NULL
CLUL1	27098	genome.wustl.edu	37	18	627157	627157	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014410.4	+1	validated	p.K162Q	0.000	102	1%	43	44.2%	-	-	benign(0.086)	tolerated(0.31)	neutral(0.034)	HMMPfam_Clusterin,HMMSmart_CLb
CLUL1	27098	genome.wustl.edu	37	18	644952	644952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014410.4	+1	validated	p.E418K	0.295	132	0%	94	29.8%	-	-	benign(0.237)	tolerated(0.29)	neutral(0.053)	HMMPfam_Clusterin,HMMSmart_CLa
NDC80	10403	genome.wustl.edu	37	18	2606502	2606502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006101.2	+1	validated	p.I518S	0.857	81	0%	23	30.4%	-	-	benign(0.032)	tolerated(0.11)	neutral(0.273)	NULL
LOC645158	645158	genome.wustl.edu	37	18	2652871	2652871	+	RNA	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078662.1	-1	model	NULL	0.997	36	0%	39	48.7%	-	-	-	-	-	-
SMCHD1	23347	genome.wustl.edu	37	18	2718175	2718175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015295.2	+1	validated	p.E760D	1.000	197	0%	96	30.2%	-	-	probably_damaging(0.973)	tolerated(0.15)	deleterious(0.656)	NULL
LPIN2	9663	genome.wustl.edu	37	18	2920829	2920829	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014646.2	-1	reviewed	p.T831	0.087	156	0%	195	13.3%	-	-	-	-	-	HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784
MYOM1	8736	genome.wustl.edu	37	18	3141949	3141949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003803.3	-1	reviewed	p.Y671*	1.000	57	0%	35	34.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYOM1	8736	genome.wustl.edu	37	18	3189036	3189036	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003803.3	-1	reviewed	p.E161*	1.000	497	0%	212	35.4%	-	-	-	-	-	NULL
TGIF1	7050	genome.wustl.edu	37	18	3457547	3457547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170695.2	+1	reviewed	p.S272Y	0.995	81	0%	73	28.8%	-	-	benign(0.167)	deleterious(0.01)	neutral(0.421)	NULL
LOC642597	642597	genome.wustl.edu	37	18	5197041	5197041	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145194.1	-1	validated	p.A4	0.998	101	0%	132	36.4%	-	-	-	-	-	NULL
ZFP161	7541	genome.wustl.edu	37	18	5291669	5291669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143823.1	-1	validated	p.G180C	0.999	92	0%	101	34.7%	-	-	possibly_damaging(0.74)	deleterious(0.01)	deleterious(0.677)	NULL
EPB41L3	23136	genome.wustl.edu	37	18	5423391	5423391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012307.2	-1	provisional	p.R442H	1.000	144	0%	55	36.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_FA
LAMA1	284217	genome.wustl.edu	37	18	6964739	6964739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005559.2	-1	validated	p.P2420L	1.000	184	0.5%	104	43.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LAMA1	284217	genome.wustl.edu	37	18	7016515	7016515	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005559.2	-1	validated	p.Y988	0.000	48	0%	56	30.4%	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
LRRC30	339291	genome.wustl.edu	37	18	7231371	7231371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105581.1	+1	provisional	p.S79P	1.000	34	0%	32	31.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_LRR_1,superfamily_SSF52058
SOGA2	23255	genome.wustl.edu	37	18	8824745	8824745	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015210.3	+1	predicted	p.I1079	1.000	57	0%	73	27.4%	-	-	-	-	-	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9255625	9255625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015208.3	+1	validated	p.S787Y	0.010	114	0%	59	33.9%	-	-	benign(0.273)	deleterious(0.02)	neutral(0.412)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257029	9257029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015208.3	+1	validated	p.S1255Y	1.000	106	0%	39	25.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257695	9257695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015208.3	+1	validated	p.S1477F	0.466	84	0%	22	18.2%	-	-	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	superfamily_Ankyrin repeat
RALBP1	10928	genome.wustl.edu	37	18	9513084	9513084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006788.3	+1	validated	p.E14G	1.000	68	0%	38	57.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VAPA	9218	genome.wustl.edu	37	18	9931856	9931856	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003574.5	+1	reviewed	p.S43	0.590	108	0%	51	49%	-	-	-	-	-	HMMPfam_Motile_Sperm,superfamily_PapD-like
VAPA	9218	genome.wustl.edu	37	18	9937051	9937051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003574.5	+1	reviewed	p.E135D	1.000	151	0%	54	35.2%	-	-	benign(0.007)	tolerated(0.13)	neutral(0.253)	NULL
VAPA	9218	genome.wustl.edu	37	18	9944943	9944943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003574.5	+1	reviewed	p.A147V	0.079	142	0%	69	37.7%	-	-	benign(0.008)	tolerated(1)	-	NULL
GNAL	2774	genome.wustl.edu	37	18	11868564	11868564	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182978.2	+1	validated	p.V311	0.667	181	0%	140	43.6%	-	-	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
ENSG00000231452	0	genome.wustl.edu	37	18	12067626	12067626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455542	-1	known	p.A212D	0.992	21	0%	20	55%	-	-	-	-	-	HMMPfam_SSDP
ENSG00000231452	0	genome.wustl.edu	37	18	12067962	12067962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455542	-1	known	p.G100D	1.000	11	0%	14	28.6%	-	-	-	-	-	HMMPfam_SSDP
AFG3L2	10939	genome.wustl.edu	37	18	12351323	12351323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006796.1	-1	reviewed	p.D470N	1.000	160	0%	147	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
AFG3L2	10939	genome.wustl.edu	37	18	12358669	12358669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006796.1	-1	reviewed	p.K342N	1.000	99	0%	71	31%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,superfamily_SSF52540
PTPN2	5771	genome.wustl.edu	37	18	12802121	12802121	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002828.2	-1	reviewed	p.D296	0.228	262	0%	99	31.3%	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
CEP192	55125	genome.wustl.edu	37	18	13049796	13049796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032142.3	+1	validated	p.R379C	0.000	113	0%	58	36.2%	-	-	possibly_damaging(0.544)	tolerated(0.11)	neutral(0.456)	NULL
CEP192	55125	genome.wustl.edu	37	18	13071106	13071106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032142.3	+1	validated	p.S1152Y	0.174	139	0%	52	40.4%	-	-	probably_damaging(0.961)	tolerated(0.08)	deleterious(0.704)	NULL
MC5R	4161	genome.wustl.edu	37	18	13825767	13825767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005913.1	+1	provisional	p.M1I	1.000	62	0%	88	36.4%	-	-	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	superfamily_Family A G protein-coupled receptor-like
MC5R	4161	genome.wustl.edu	37	18	13826089	13826089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005913.1	+1	provisional	p.A109T	0.260	116	0%	158	38.6%	-	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MC5R	4161	genome.wustl.edu	37	18	13826716	13826716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005913.1	+1	provisional	p.A318T	0.000	88	0%	111	34.2%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14752955	14752955	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145029.1	+1	validated	p.L152	0.003	225	0%	197	36.5%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30B	374860	genome.wustl.edu	37	18	14778016	14778016	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145029.1	+1	validated	p.T454	0.000	160	0%	63	34.9%	-	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14799109	14799109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145029.1	+1	validated	p.D680G	0.005	434	0%	188	32.4%	-	-	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	NULL
GREB1L	80000	genome.wustl.edu	37	18	18964282	18964282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142966.1	+1	provisional	p.D91	0.999	92	0%	63	47.6%	-	-	-	-	-	NULL
GREB1L	80000	genome.wustl.edu	37	18	19080060	19080060	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142966.1	+1	provisional	p.S1254	0.002	21	0%	34	26.5%	-	-	-	-	-	NULL
C18orf8	29919	genome.wustl.edu	37	18	21096388	21096388	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013326.3	+1	validated	e7+1	1.000	100	0%	63	33.3%	-	-	-	-	-	-
C18orf8	29919	genome.wustl.edu	37	18	21110523	21110523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013326.3	+1	validated	p.R614H	1.000	89	0%	70	32.9%	-	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Mic1
LAMA3	3909	genome.wustl.edu	37	18	21395522	21395522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198129.1	+1	reviewed	p.Y678N	1.000	103	0%	48	35.4%	-	-	probably_damaging(0.993)	tolerated(0.3)	deleterious(0.479)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
OSBPL1A	114876	genome.wustl.edu	37	18	21759783	21759783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080597.2	-1	reviewed	p.A610V	1.000	99	0%	50	30%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Oxysterol_BP
ZNF521	25925	genome.wustl.edu	37	18	22804504	22804504	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015461.2	-1	validated	p.A1126	0.974	171	0%	61	11.5%	-	-	-	-	-	NULL
ZNF521	25925	genome.wustl.edu	37	18	22805605	22805605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015461.2	-1	validated	p.W759C	1.000	120	0%	29	44.8%	-	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AQP4	361	genome.wustl.edu	37	18	24440778	24440778	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001650.4	-1	reviewed	p.S217	0.988	80	0%	76	30.3%	-	-	-	-	-	HMMPfam_MIP,superfamily_Aquaporin-like
CHST9	83539	genome.wustl.edu	37	18	24497283	24497283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031422.4	-1	validated	p.R91Q	0.000	115	0%	31	29%	-	-	benign(0.427)	tolerated(0.14)	neutral(0.389)	NULL
CDH2	1000	genome.wustl.edu	37	18	25563014	25563014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001792.3	-1	reviewed	p.R748H	1.000	257	0.4%	81	27.2%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Cadherin_C
CDH2	1000	genome.wustl.edu	37	18	25583057	25583057	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001792.3	-1	reviewed	p.I308	0.997	153	0%	69	33.3%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28576924	28576924	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001941.3	-1	reviewed	p.Q776*	0.992	187	0%	45	33.3%	-	-	-	-	-	NULL
DSC3	1825	genome.wustl.edu	37	18	28609524	28609524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001941.3	-1	reviewed	p.C142Y	0.855	73	0%	44	31.8%	-	-	benign(0.054)	tolerated(0.15)	neutral(0.244)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28610991	28610991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001941.3	-1	reviewed	p.K101R	0.000	117	0%	74	37.8%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin_pro,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28736014	28736014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024421.2	-1	reviewed	p.V155I	0.002	98	0%	93	39.8%	-	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28934290	28934290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001942.2	+1	reviewed	p.G711*	1.000	110	0%	73	39.7%	-	-	-	-	-	HMMPfam_Cadherin_C
DSG1	1828	genome.wustl.edu	37	18	28935266	28935266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001942.2	+1	reviewed	p.R1036Q	1.000	50	0%	42	35.7%	-	-	possibly_damaging(0.516)	tolerated(0.14)	neutral(0.423)	NULL
DSG3	1830	genome.wustl.edu	37	18	29044311	29044311	+	Missense_Mutation	SNP	G	G	A	rs191249015	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001944.2	+1	reviewed	p.D413N	0.998	92	0%	48	35.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
B4GALT6	9331	genome.wustl.edu	37	18	29205585	29205585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004775.3	-1	reviewed	p.D381N	1.000	159	0%	74	37.8%	-	-	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
B4GALT6	9331	genome.wustl.edu	37	18	29207013	29207013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004775.3	-1	reviewed	p.F283Y	1.000	129	0%	95	29.5%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Galactosyl_T_2,superfamily_SSF53448
TRAPPC8	22878	genome.wustl.edu	37	18	29444654	29444654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014939.3	-1	validated	p.S894Y	1.000	165	0%	49	26.5%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29450466	29450466	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014939.3	-1	validated	e16-1	1.000	60	0%	29	44.8%	-	-	-	-	-	-
FAM59A	64762	genome.wustl.edu	37	18	29850300	29850300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022751.1	-1	provisional	p.R538Q	1.000	287	0%	150	36.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM59A	64762	genome.wustl.edu	37	18	29867721	29867721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022751.1	-1	provisional	p.T280M	1.000	182	0%	98	29.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL14	57565	genome.wustl.edu	37	18	30260221	30260221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020805.1	-1	provisional	p.R500Q	1.000	242	0%	57	31.6%	-	-	probably_damaging(0.997)	tolerated(1)	neutral(0.466)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
NOL4	8715	genome.wustl.edu	37	18	31463253	31463253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003787.3	-1	validated	p.G560W	1.000	133	0%	30	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DTNA	1837	genome.wustl.edu	37	18	32444009	32444009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001390.4	+1	reviewed	p.L549I	1.000	165	0%	101	28.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF397	84307	genome.wustl.edu	37	18	32822630	32822630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001135178.2	+1	reviewed	p.E66K	1.000	76	0%	72	41.7%	-	-	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_SCAN,HMMSmart_SM00431
INO80C	125476	genome.wustl.edu	37	18	33059310	33059310	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098817.1	-1	validated	p.I147	0.986	207	0%	80	36.2%	-	-	-	-	-	NULL
GALNT1	2589	genome.wustl.edu	37	18	33289623	33289623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020474.3	+1	reviewed	p.C523	1.000	107	0%	35	40%	-	-	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
C18orf21	83608	genome.wustl.edu	37	18	33558909	33558909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031446.3	+1	validated	p.K201N	0.097	107	0%	79	39.2%	-	-	possibly_damaging(0.762)	tolerated(0.1)	deleterious(0.569)	NULL
PIK3C3	5289	genome.wustl.edu	37	18	39609305	39609305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002647.2	+1	validated	p.R536K	1.000	191	0%	45	35.6%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_Kinase_like
EPG5	57724	genome.wustl.edu	37	18	43464740	43464740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020964.2	-1	validated	p.V1716L	0.601	113	0%	56	32.1%	-	-	benign(0)	tolerated(1)	-	NULL
EPG5	57724	genome.wustl.edu	37	18	43479407	43479407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020964.2	-1	validated	p.G1591S	0.255	127	0%	60	35%	-	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44114399	44114399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144612.6	-1	reviewed	p.E1093*	1.000	151	0%	85	49.4%	-	-	-	-	-	HMMPfam_PLAT,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44139508	44139508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000441551	-1	known	p.C1020*	1.000	135	0%	149	38.3%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44146334	44146334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144612.6	-1	reviewed	p.P497S	1.000	45	0%	42	47.6%	-	-	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44149553	44149553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144612.6	-1	reviewed	p.S421I	1.000	126	0.8%	94	40.4%	-	-	benign(0.376)	deleterious(0.04)	deleterious(0.469)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44159683	44159683	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000441551	-1	known	p.L554I	1.000	188	0%	82	40.2%	-	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44181292	44181292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144612.6	-1	reviewed	p.R63Q	1.000	65	0%	36	41.7%	-	-	unknown(0)	deleterious(0.02)	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
PIAS2	9063	genome.wustl.edu	37	18	44398353	44398353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173206.2	-1	validated	p.T569N	1.000	264	0%	45	28.9%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45566720	45566720	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039360.1	-1	validated	p.P253	0.034	37	0%	36	38.9%	-	-	-	-	-	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45567083	45567083	+	Silent	SNP	G	G	A	rs139390741	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039360.1	-1	validated	p.D132	0.000	244	0%	317	41%	-	-	-	-	-	NULL
CTIF	9811	genome.wustl.edu	37	18	46385864	46385864	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142397.1	+1	validated	p.S579	1.000	27	0%	51	43.1%	-	-	-	-	-	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
DYM	54808	genome.wustl.edu	37	18	46570520	46570520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017653.3	-1	reviewed	p.F639V	1.000	93	0%	61	36.1%	-	-	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMPfam_Dymeclin
ACAA2	10449	genome.wustl.edu	37	18	47323856	47323856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006111.2	-1	reviewed	p.S98P	1.000	74	0%	96	39.6%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,superfamily_Thiolase-like
MYO5B	4645	genome.wustl.edu	37	18	47518708	47518708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080467.2	-1	reviewed	p.G236R	1.000	166	0%	80	38.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5B	4645	genome.wustl.edu	37	18	47518719	47518719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080467.2	-1	reviewed	p.Y232C	1.000	164	0%	87	34.5%	-	-	possibly_damaging(0.945)	tolerated(0.14)	deleterious(0.639)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MBD1	4152	genome.wustl.edu	37	18	47796110	47796110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000382948	-1	known	p.R515Q	0.010	82	0%	186	41.4%	-	-	-	-	-	NULL
MBD1	4152	genome.wustl.edu	37	18	47799730	47799730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015846.3	-1	reviewed	p.V520I	0.431	49	0%	82	17.1%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
MBD1	4152	genome.wustl.edu	37	18	47806310	47806310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015846.3	-1	reviewed	p.R18H	0.991	20	0%	49	46.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
LOC100287130	100287130	genome.wustl.edu	37	18	47809047	47809047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343599.1	+1	model	p.A83T	0.985	90	0%	155	38.1%	-	-	-	-	-	NULL
C18orf54	162681	genome.wustl.edu	37	18	51898868	51898868	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173529.4	+1	validated	p.G292	0.997	140	0%	41	41.5%	-	-	-	-	-	NULL
WDR7	23335	genome.wustl.edu	37	18	54694426	54694426	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015285.2	+1	reviewed	p.R1487	1.000	23	0%	26	26.9%	-	-	-	-	-	NULL
NARS	4677	genome.wustl.edu	37	18	55274766	55274766	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004539.3	-1	validated	p.I237	1.000	79	0%	42	33.3%	-	-	-	-	-	HMMPfam_tRNA-synt_2,superfamily_SSF55681
ALPK2	115701	genome.wustl.edu	37	18	56203878	56203878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052947.3	-1	validated	p.E1181K	0.064	56	0%	32	50%	-	-	possibly_damaging(0.647)	tolerated(0.06)	deleterious(0.549)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56586604	56586604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018181.4	+1	validated	p.R362H	1.000	40	0%	54	27.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LMAN1	3998	genome.wustl.edu	37	18	57013279	57013279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005570.3	-1	reviewed	p.T276R	1.000	193	0%	90	40%	-	-	possibly_damaging(0.816)	tolerated(0.52)	neutral(0.317)	NULL
MC4R	4160	genome.wustl.edu	37	18	58039242	58039242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005912.2	-1	reviewed	p.A114V	0.224	60	0%	18	33.3%	-	-	benign(0.064)	tolerated(0.4)	neutral(0.020)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIGN	23556	genome.wustl.edu	37	18	59780478	59780478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012327.5	-1	reviewed	p.F441L	0.998	157	0%	31	29%	-	-	benign(0)	tolerated(1)	-	HMMPfam_PigN
TNFRSF11A	8792	genome.wustl.edu	37	18	60052118	60052118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003839.2	+1	reviewed	p.R568C	0.990	10	0%	20	40%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
VPS4B	9525	genome.wustl.edu	37	18	61078799	61078799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004869.3	-1	reviewed	p.L14M	1.000	104	0%	42	26.2%	-	-	benign(0.235)	tolerated(0.06)	neutral(0.346)	HMMPfam_MIT,HMMSmart_SM00745
SERPINB13	5275	genome.wustl.edu	37	18	61264313	61264313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012397.3	+1	validated	p.A298T	0.000	35	0%	28	28.6%	-	-	benign(0.406)	tolerated(0.63)	neutral(0.134)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB11	89778	genome.wustl.edu	37	18	61383308	61383308	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080475.2	+1	validated	p.L133	0.194	257	0.8%	60	35%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB11	89778	genome.wustl.edu	37	18	61390600	61390600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080475.2	+1	validated	p.T382	0.000	141	0%	31	35.5%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB8	5271	genome.wustl.edu	37	18	61652410	61652410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002640.3	+1	validated	p.E217D	1.000	105	0%	48	25%	-	-	possibly_damaging(0.456)	tolerated(0.09)	neutral(0.446)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63548088	63548088	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004361.2	+1	reviewed	p.L772	0.055	42	0%	32	37.5%	-	-	-	-	-	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64212121	64212121	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021153.2	-1	reviewed	p.V265	0.322	194	0%	135	42.2%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64235714	64235714	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021153.2	-1	reviewed	p.D143	1.000	190	0%	33	42.4%	-	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65179886	65179886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032160.2	-1	validated	p.A664T	1.000	58	0%	84	36.9%	-	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180515	65180515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032160.2	-1	validated	p.A454D	1.000	110	0%	114	35.1%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180743	65180743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032160.2	-1	validated	p.R378Q	1.000	163	0%	227	37.9%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
DSEL	92126	genome.wustl.edu	37	18	65181772	65181772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032160.2	-1	validated	p.S35Y	1.000	128	0%	167	35.3%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
TMX3	54495	genome.wustl.edu	37	18	66344351	66344351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019022.3	-1	validated	p.G395V	1.000	215	0%	41	36.6%	-	-	probably_damaging(0.989)	tolerated(0.09)	deleterious(0.736)	NULL
RTTN	25914	genome.wustl.edu	37	18	67742649	67742649	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173630.3	-1	validated	p.R1501	0.003	88	0%	23	39.1%	-	-	-	-	-	NULL
SOCS6	9306	genome.wustl.edu	37	18	67993261	67993261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004232.3	+1	reviewed	p.S453P	1.000	159	0%	109	36.7%	-	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
SOCS6	9306	genome.wustl.edu	37	18	67993430	67993430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004232.3	+1	reviewed	p.R509H	1.000	143	0%	67	38.8%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_SOCS_box,HMMSmart_SOCS
CBLN2	147381	genome.wustl.edu	37	18	70209171	70209171	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182511.3	-1	validated	p.D75	0.995	17	0%	24	25%	-	-	-	-	-	NULL
FAM69C	125704	genome.wustl.edu	37	18	72109231	72109231	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001044369.2	-1	validated	p.R333*	0.001	108	0%	136	33.1%	-	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72775977	72775977	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017757.2	+1	reviewed	p.D2100	1.000	24	0%	63	49.2%	-	-	-	-	-	NULL
ZADH2	284273	genome.wustl.edu	37	18	72913782	72913782	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175907.4	-1	validated	p.V241	0.988	71	0%	126	38.9%	-	-	-	-	-	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
TSHZ1	10194	genome.wustl.edu	37	18	73000169	73000169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005786.4	+1	reviewed	p.S891F	1.000	82	0%	100	11%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389
ZNF516	9658	genome.wustl.edu	37	18	74092067	74092067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000443185	-1	known	p.R668I	0.000	128	0%	171	10.5%	-	-	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	NULL
GALR1	2587	genome.wustl.edu	37	18	74962694	74962694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001480.3	+1	reviewed	p.G64C	1.000	21	0%	77	32.5%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SALL3	27164	genome.wustl.edu	37	18	76752162	76752162	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_171999.2	+1	validated	p.C57	0.949	6	0.000	12	0.500	-	-	-	-	-	HMMSmart_SM00355
SALL3	27164	genome.wustl.edu	37	18	76754952	76754952	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_171999.2	+1	validated	p.A987	1.000	37	0%	87	13.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL3	27164	genome.wustl.edu	37	18	76755282	76755282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_171999.2	+1	validated	p.G1097	1.000	10	0%	22	36.4%	-	-	-	-	-	NULL
ATP9B	374868	genome.wustl.edu	37	18	77107910	77107910	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198531.3	+1	validated	p.I941	1.000	55	0%	90	33.3%	-	-	-	-	-	NULL
ATP9B	374868	genome.wustl.edu	37	18	77108158	77108158	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198531.3	+1	validated	p.F955	0.966	299	0%	422	35.5%	-	-	-	-	-	NULL
KCNG2	26251	genome.wustl.edu	37	18	77659307	77659307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012283.1	+1	reviewed	p.V298M	1.000	7	0.000	21	0.476	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
PPAP2C	8612	genome.wustl.edu	37	19	282294	282294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177543.1	-1	reviewed	p.R207Q	0.743	34	0%	75	10.7%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
MIER2	54531	genome.wustl.edu	37	19	311869	311869	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017550.1	-1	provisional	p.N320	1.000	57	0%	105	31.4%	-	-	-	-	-	HMMSmart_SANT,HMMPfam_Myb_DNA-binding
MADCAM1	8174	genome.wustl.edu	37	19	498585	498585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130760.2	+1	reviewed	p.D143N	0.000	21	0%	34	29.4%	-	-	benign(0.373)	tolerated(0.41)	neutral(0.134)	HMMPfam_Adhes-Ig_like,superfamily_Immunoglobulin
HCN2	610	genome.wustl.edu	37	19	613886	613886	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001194.3	+1	validated	p.A620	1.000	6	0.000	24	0.375	-	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
POLRMT	5442	genome.wustl.edu	37	19	618504	618504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005035.3	-1	reviewed	p.A1136T	0.988	136	0%	302	44.4%	-	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_RNA_pol,superfamily_SSF56672
POLRMT	5442	genome.wustl.edu	37	19	619598	619598	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005035.3	-1	reviewed	p.S1018	0.001	17	0%	45	35.6%	-	-	-	-	-	HMMPfam_RNA_pol,superfamily_SSF56672
RNF126	55658	genome.wustl.edu	37	19	647940	647940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000340092	-1	known	p.T309I	0.004	6	0.000	17	0.412	-	-	benign(0.016)	tolerated(0.05)	neutral(0.346)	NULL
FSTL3	10272	genome.wustl.edu	37	19	681702	681702	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005860.2	+1	reviewed	p.F262	0.982	6	0.000	15	0.267	-	-	-	-	-	NULL
LPPR3	79948	genome.wustl.edu	37	19	815723	815723	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024888.1	-1	provisional	p.E68	0.997	30	0%	55	34.5%	-	-	-	-	-	superfamily_AcPase_VanPerase
ABCA7	10347	genome.wustl.edu	37	19	1041882	1041882	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019112.3	+1	reviewed	p.Q71	1.000	15	0%	30	53.3%	-	-	-	-	-	NULL
SBNO2	22904	genome.wustl.edu	37	19	1122759	1122759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014963.2	-1	validated	p.R271H	1.000	13	0%	41	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MIDN	90007	genome.wustl.edu	37	19	1255564	1255564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177401.4	+1	validated	p.A334T	0.998	20	0%	50	32%	-	-	benign(0.082)	tolerated(0.56)	neutral(0.013)	NULL
MUM1	84939	genome.wustl.edu	37	19	1362259	1362259	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032853.3	+1	validated	p.S375	0.001	55	0%	112	42.9%	-	-	-	-	-	NULL
ADAMTSL5	339366	genome.wustl.edu	37	19	1506059	1506059	+	Silent	SNP	C	C	T	rs182451667	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_213604.2	-1	validated	p.A457	0.003	9	0.000	38	0.289	-	-	-	-	-	superfamily_TIMP_like,HMMPfam_NTR
CSNK1G2-AS1	255193	genome.wustl.edu	37	19	1953936	1953936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000314315	-1	known	p.R67H	0.000	70	0%	185	35.7%	-	-	-	-	-	NULL
AP3D1	8943	genome.wustl.edu	37	19	2115586	2115586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003938.5	-1	validated	p.E700D	0.830	29	0%	74	35.1%	-	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	HMMPfam_BLVR
DOT1L	84444	genome.wustl.edu	37	19	2185905	2185905	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032482.2	+1	validated	p.V59	0.004	165	0%	364	39.8%	-	-	-	-	-	superfamily_SSF53335
DOT1L	84444	genome.wustl.edu	37	19	2211820	2211820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032482.2	+1	validated	p.Q512H	1.000	77	0%	167	37.1%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC39A3	29985	genome.wustl.edu	37	19	2737072	2737072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144564.4	-1	validated	p.A62T	1.000	72	0%	147	35.4%	-	-	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	HMMPfam_Zip
ZNF554	115196	genome.wustl.edu	37	19	2834041	2834041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102651.1	+1	validated	p.R270W	0.002	105	0%	125	33.6%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
ZNF77	58492	genome.wustl.edu	37	19	2933732	2933732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021217.2	-1	validated	p.E465K	0.000	188	0%	201	21.9%	-	-	benign(0.009)	tolerated(0.57)	neutral(0.007)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NFIC	4782	genome.wustl.edu	37	19	3381814	3381814	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205843.1	+1	validated	p.H36	0.995	24	0%	56	46.4%	-	-	-	-	-	HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1
MFSD12	126321	genome.wustl.edu	37	19	3547482	3547482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021731.2	-1	validated	p.Y301H	1.000	28	0%	46	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PIP5K1C	23396	genome.wustl.edu	37	19	3633472	3633472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012398.1	-1	reviewed	p.A656V	0.790	27	0%	57	36.8%	-	-	benign(0.014)	tolerated(0.1)	neutral(0.287)	NULL
TJP3	27134	genome.wustl.edu	37	19	3747876	3747876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014428.1	+1	provisional	p.V836I	0.084	10	0%	42	40.5%	-	-	benign(0.059)	tolerated(0.58)	neutral(0.009)	NULL
ZFR2	23217	genome.wustl.edu	37	19	3831313	3831313	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015174.1	-1	validated	p.C280	0.989	5	0.000	12	0.333	-	-	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ATCAY	85300	genome.wustl.edu	37	19	3907733	3907733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033064.4	+1	reviewed	p.D120	1.000	41	0%	50	16%	-	-	-	-	-	NULL
ATCAY	85300	genome.wustl.edu	37	19	3909608	3909608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033064.4	+1	reviewed	p.D258N	1.000	46	0%	58	36.2%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
DAPK3	1613	genome.wustl.edu	37	19	3964286	3964286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001348.1	-1	reviewed	p.A170V	0.972	61	0%	113	32.7%	-	-	benign(0.021)	deleterious(0.02)	neutral(0.384)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PIAS4	51588	genome.wustl.edu	37	19	4013193	4013193	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015897.2	+1	provisional	p.P100	0.001	21	0%	51	31.4%	-	-	-	-	-	NULL
EBI3	10148	genome.wustl.edu	37	19	4229595	4229595	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005755.2	+1	reviewed	p.P16	0.000	27	0%	36	30.6%	-	-	-	-	-	NULL
CCDC94	55702	genome.wustl.edu	37	19	4258331	4258331	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018074.4	+1	provisional	p.H166	0.727	13	0%	20	55%	-	-	-	-	-	HMMPfam_DUF572
STAP2	55620	genome.wustl.edu	37	19	4326963	4326963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017720.2	-1	reviewed	p.V269M	0.858	35	0%	77	31.2%	-	-	benign(0.354)	deleterious(0.04)	neutral(0.461)	NULL
STAP2	55620	genome.wustl.edu	37	19	4327185	4327185	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017720.2	-1	reviewed	p.F233	0.764	85	0%	150	36.7%	-	-	-	-	-	superfamily_SH2 domain
HDGFRP2	84717	genome.wustl.edu	37	19	4494216	4494216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001520.1	+1	reviewed	p.R323Q	1.000	7	0.000	11	0.364	-	-	unknown(0)	deleterious(0.04)	-	NULL
HDGFRP2	84717	genome.wustl.edu	37	19	4498361	4498361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001520.1	+1	reviewed	p.K487N	0.985	24	0%	63	12.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLIN4	729359	genome.wustl.edu	37	19	4504764	4504764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080400.1	-1	provisional	p.G1261S	0.000	15	0%	31	48.4%	-	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain
LRG1	116844	genome.wustl.edu	37	19	4538614	4538614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052972.2	-1	validated	p.L128M	0.323	26	0%	46	39.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
SEMA6B	10501	genome.wustl.edu	37	19	4558054	4558054	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032108.2	-1	reviewed	p.L77	0.996	36	0%	66	42.4%	-	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
C19orf10	56005	genome.wustl.edu	37	19	4660692	4660692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019107.3	-1	validated	p.A120T	0.996	66	0%	144	29.2%	-	-	benign(0.028)	deleterious(0.04)	neutral(0.350)	HMMPfam_UPF0556
LOC100133070	100133070	genome.wustl.edu	37	19	4793914	4793914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001719147.1	-1	model	p.E54*	0.001	8	0.000	16	0.312	-	-	-	-	-	NULL
TICAM1	148022	genome.wustl.edu	37	19	4817843	4817843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182919.2	-1	validated	p.D183Y	0.004	38	0%	72	40.3%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
KDM4B	23030	genome.wustl.edu	37	19	5137288	5137288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015015.2	+1	validated	p.R775H	0.960	37	0%	90	25.6%	-	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
KDM4B	23030	genome.wustl.edu	37	19	5137338	5137338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015015.2	+1	validated	p.A792T	0.992	24	0%	55	47.3%	-	-	possibly_damaging(0.864)	tolerated(0.08)	deleterious(0.635)	superfamily_FYVE/PHD zinc finger
PTPRS	5802	genome.wustl.edu	37	19	5220059	5220059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002850.3	-1	reviewed	p.T1219M	0.000	31	0%	63	30.2%	-	-	benign(0.249)	deleterious(0.03)	neutral(0.390)	NULL
PTPRS	5802	genome.wustl.edu	37	19	5231337	5231337	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002850.3	-1	reviewed	p.V713	1.000	5	0.000	32	0.281	-	-	-	-	-	superfamily_Fibronectin type III
PTPRS	5802	genome.wustl.edu	37	19	5245887	5245887	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002850.3	-1	reviewed	p.N296	0.888	42	0%	99	50.5%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LONP1	9361	genome.wustl.edu	37	19	5713148	5713148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004793.2	-1	reviewed	p.R212I	1.000	58	0%	108	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LON,HMMSmart_LON
CATSPERD	257062	genome.wustl.edu	37	19	5733976	5733976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152784.3	+1	validated	p.S129Y	0.001	193	0%	204	30.4%	-	-	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	NULL
PRR22	163154	genome.wustl.edu	37	19	5783661	5783661	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001134316.1	-1	validated	p.T199	0.003	7	0.000	18	0.333	-	-	-	-	-	NULL
RANBP3	8498	genome.wustl.edu	37	19	5918573	5918573	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007322.2	-1	reviewed	p.S469	0.643	78	0%	132	11.4%	-	-	-	-	-	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
RANBP3	8498	genome.wustl.edu	37	19	5957972	5957972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007322.2	-1	reviewed	p.I12T	1.000	162	0%	255	35.3%	-	-	benign(0.031)	deleterious(0)	neutral(0.446)	NULL
GTF2F1	2962	genome.wustl.edu	37	19	6389522	6389522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002096.2	-1	validated	p.V87I	0.959	49	0%	75	33.3%	-	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_TFIIF_alpha,superfamily_Rap30/74 interaction domains
SLC25A23	79085	genome.wustl.edu	37	19	6456476	6456476	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024103.2	-1	validated	p.S146	0.956	86	0%	182	42.9%	-	-	-	-	-	superfamily_EF-hand
DENND1C	79958	genome.wustl.edu	37	19	6467722	6467722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024898.2	-1	validated	p.Q733H	0.024	65	0%	119	13.4%	-	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
DENND1C	79958	genome.wustl.edu	37	19	6467843	6467843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024898.2	-1	validated	p.S693Y	0.001	73	0%	143	39.9%	-	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
DENND1C	79958	genome.wustl.edu	37	19	6477410	6477410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024898.2	-1	validated	p.Q142H	0.001	22	0%	37	18.9%	-	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_DENN,HMMSmart_DENN
TUBB4A	10382	genome.wustl.edu	37	19	6496156	6496156	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006087.2	-1	provisional	p.D118	0.998	78	0%	135	37%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
C3	718	genome.wustl.edu	37	19	6713510	6713510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000064.2	-1	reviewed	p.G262R	1.000	42	0%	107	37.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_A2M_N
GPR108	56927	genome.wustl.edu	37	19	6731268	6731268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080452.1	-1	provisional	p.R459H	0.913	30	0%	69	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lung_7-TM_R
TRIP10	9322	genome.wustl.edu	37	19	6743776	6743776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004240.2	+1	validated	p.A191T	1.000	167	0%	277	11.6%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
VAV1	7409	genome.wustl.edu	37	19	6822480	6822480	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005428.2	+1	reviewed	p.Q203	1.000	9	0.000	30	0.400	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,superfamily_Calponin-homology
EMR1	2015	genome.wustl.edu	37	19	6926430	6926430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001974.3	+1	reviewed	p.F680L	0.998	266	0%	178	35.4%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
INSR	3643	genome.wustl.edu	37	19	7125480	7125480	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000208.2	-1	reviewed	p.T1024	0.998	55	0%	51	11.8%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
INSR	3643	genome.wustl.edu	37	19	7168035	7168035	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000208.2	-1	reviewed	p.P518	0.354	74	0%	64	15.6%	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
ARHGEF18	23370	genome.wustl.edu	37	19	7534862	7534862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130955.1	+1	reviewed	p.R1099H	0.984	24	0%	64	32.8%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ZNF358	140467	genome.wustl.edu	37	19	7585704	7585704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018083.4	+1	validated	p.P526S	0.288	50	0%	108	30.6%	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7589892	7589892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020533.2	+1	reviewed	p.A26V	0.000	24	0%	42	40.5%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7591450	7591450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000394321	+1	known	p.R8H	0.179	78	0%	142	35.9%	-	-	unknown(0)	-	-	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7619128	7619128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006702.4	+1	reviewed	p.R774Q	1.000	71	1.4%	118	32.2%	-	-	probably_damaging(0.963)	tolerated(0.11)	deleterious(0.677)	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7680153	7680153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080429.2	+1	validated	p.R946W	0.001	25	0%	47	27.7%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
STXBP2	6813	genome.wustl.edu	37	19	7704637	7704637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006949.2	+1	reviewed	p.R64W	0.998	107	0%	208	45.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
TRAPPC5	126003	genome.wustl.edu	37	19	7747497	7747497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042461.1	+1	validated	p.R120C	0.991	14	0%	28	39.3%	-	-	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_TRAPP
CD209	30835	genome.wustl.edu	37	19	7806216	7806216	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026692.1	-1	reviewed	NULL	0.026	14	0%	19	31.6%	-	-	-	-	-	-
CD209	30835	genome.wustl.edu	37	19	7806647	7806647	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026692.1	-1	reviewed	NULL	1.000	71	0%	79	25.3%	-	-	-	-	-	-
CD209	30835	genome.wustl.edu	37	19	7812204	7812204	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021155.3	-1	reviewed	p.K32*	0.000	265	0%	230	29.1%	-	-	-	-	-	NULL
LRRC8E	80131	genome.wustl.edu	37	19	7960528	7960528	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025061.3	+1	validated	p.Q14*	1.000	54	0%	78	11.5%	-	-	-	-	-	NULL
LRRC8E	80131	genome.wustl.edu	37	19	7963812	7963812	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025061.3	+1	validated	p.F135	1.000	119	0%	182	34.6%	-	-	-	-	-	NULL
LRRC8E	80131	genome.wustl.edu	37	19	7964131	7964131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025061.3	+1	validated	p.R242C	1.000	150	0%	227	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBN3	84467	genome.wustl.edu	37	19	8152964	8152964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032447.3	-1	reviewed	p.G2159D	1.000	81	0%	105	38.1%	-	-	probably_damaging(0.978)	tolerated(0.08)	deleterious(0.720)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA
FBN3	84467	genome.wustl.edu	37	19	8181580	8181580	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032447.3	-1	reviewed	p.T1230	0.854	40	0%	56	26.8%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN3	84467	genome.wustl.edu	37	19	8182412	8182412	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032447.3	-1	reviewed	p.I1133	0.542	16	0%	32	28.1%	-	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN3	84467	genome.wustl.edu	37	19	8182460	8182460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032447.3	-1	reviewed	p.C1117*	0.973	18	0%	30	36.7%	-	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN3	84467	genome.wustl.edu	37	19	8209801	8209801	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032447.3	-1	reviewed	p.C167	0.933	30	0%	55	10.9%	-	-	-	-	-	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
MARCH2	51257	genome.wustl.edu	37	19	8491581	8491581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005415.1	+1	validated	p.V89M	1.000	57	1.8%	80	31.2%	-	-	benign(0.386)	deleterious(0)	deleterious(0.568)	HMMSmart_RINGv,HMMPfam_zf-C3HC4,superfamily_SSF57850
MARCH2	51257	genome.wustl.edu	37	19	8503332	8503332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005415.1	+1	validated	p.R215C	0.995	29	0%	56	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HNRNPM	4670	genome.wustl.edu	37	19	8551095	8551095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005968.3	+1	validated	p.A595T	0.400	21	0%	43	27.9%	-	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
PRAM1	84106	genome.wustl.edu	37	19	8563890	8563890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032152.3	-1	reviewed	p.A268T	0.000	33	0%	87	35.6%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
MYO1F	4542	genome.wustl.edu	37	19	8616642	8616642	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012335.3	-1	validated	p.S251	0.043	156	0.6%	272	39%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS10	81794	genome.wustl.edu	37	19	8650067	8650067	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030957.2	-1	reviewed	p.C997	1.000	6	0.000	10	0.800	-	-	-	-	-	HMMSmart_TSP1,superfamily_TSP1
ADAMTS10	81794	genome.wustl.edu	37	19	8660663	8660663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030957.2	-1	reviewed	p.R488C	1.000	58	0%	88	27.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADAMTS10	81794	genome.wustl.edu	37	19	8665907	8665907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030957.2	-1	reviewed	p.R239C	1.000	23	0%	31	16.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Reprolysin,superfamily_SSF55486
ZNF558	148156	genome.wustl.edu	37	19	8931926	8931926	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144693.1	-1	provisional	p.L59	0.843	287	0%	171	38.6%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
MUC16	94025	genome.wustl.edu	37	19	8962016	8962016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.A14454V	1.000	42	0%	28	35.7%	-	-	benign(0.15)	deleterious(0.03)	neutral(0.378)	NULL
MUC16	94025	genome.wustl.edu	37	19	9048565	9048565	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.S11022	0.001	232	0.4%	85	9.4%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9050219	9050219	+	Missense_Mutation	SNP	C	C	A	rs147543535	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.R10471I	0.000	595	0%	208	33.2%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9059365	9059365	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.E9361*	0.000	318	0%	122	34.4%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060254	9060254	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.R9064	0.000	409	0%	124	28.2%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060935	9060935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.E8837D	0.000	265	0%	78	35.9%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9063257	9063257	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.T8063	0.001	282	0%	103	34%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9063405	9063405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.D8014A	0.000	381	0%	124	37.1%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9064399	9064399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.E7683*	0.000	257	0%	123	38.2%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9065929	9065929	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.E7173*	0.001	507	0%	198	36.9%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9070600	9070600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.D5616N	0.001	213	0%	93	38.7%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9071811	9071811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.S5212F	0.000	210	0%	105	28.6%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9075393	9075393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.R4018K	0.000	131	0%	63	9.5%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9085105	9085105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.I2237S	0.132	172	0%	101	36.6%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9087398	9087398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.D1473N	0.004	169	0%	78	35.9%	-	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9088466	9088466	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024690.2	-1	validated	p.E1117*	0.001	213	0%	89	32.6%	-	-	-	-	-	NULL
ENSG00000188314	0	genome.wustl.edu	37	19	9346350	9346350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000344049	+1	known	p.F72L	0.097	94	0%	47	40.4%	-	-	possibly_damaging(0.523)	deleterious(0)	deleterious(0.621)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF699	374879	genome.wustl.edu	37	19	9406690	9406690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198535.1	-1	provisional	p.A464S	0.000	154	0%	77	32.5%	-	-	possibly_damaging(0.749)	tolerated(0.75)	neutral(0.277)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF266	10781	genome.wustl.edu	37	19	9524066	9524066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006631.2	-1	validated	p.R512Q	0.006	120	0.8%	65	38.5%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF266	10781	genome.wustl.edu	37	19	9524830	9524830	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006631.2	-1	validated	p.Q257	0.002	147	0%	102	11.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577475	9577475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152476.2	-1	validated	p.D716E	0.030	158	0%	48	25%	-	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152476.2	-1	validated	p.R694Q	0.000	100	0%	38	28.9%	-	-	probably_damaging(0.987)	tolerated(0.64)	neutral(0.440)	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9578508	9578508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152476.2	-1	validated	p.G372E	0.807	346	0%	117	28.2%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9583907	9583907	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152476.2	-1	validated	p.I62	0.000	120	0%	65	38.5%	-	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
FBXL12	54850	genome.wustl.edu	37	19	9921797	9921797	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017703.1	-1	provisional	p.P252	0.008	62	0%	134	35.1%	-	-	-	-	-	superfamily_RNI-like
RDH8	50700	genome.wustl.edu	37	19	10132278	10132278	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015725.2	+1	validated	p.P263	0.990	76	0%	94	34%	-	-	-	-	-	superfamily_NAD(P)-bd
C19orf66	55337	genome.wustl.edu	37	19	10197688	10197688	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018381.2	+1	validated	p.F35	0.995	35	0%	57	38.6%	-	-	-	-	-	NULL
C19orf66	55337	genome.wustl.edu	37	19	10197961	10197961	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018381.2	+1	validated	p.N60	0.788	50	0%	99	27.3%	-	-	-	-	-	NULL
ANGPTL6	83854	genome.wustl.edu	37	19	10205569	10205569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031917.2	-1	validated	p.V210M	0.536	59	0%	104	29.8%	-	-	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10221647	10221647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040664.1	+1	validated	p.R410W	0.050	27	0%	53	49.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10244943	10244943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130823.1	-1	reviewed	p.G1605D	1.000	42	0%	72	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_methylase,PatternScan_C5_MTASE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DNMT1	1786	genome.wustl.edu	37	19	10265724	10265724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130823.1	-1	reviewed	p.E501K	0.999	70	0%	83	36.1%	-	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10270567	10270567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130823.1	-1	reviewed	p.Q374R	1.000	157	0%	203	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10287992	10287992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130823.1	-1	reviewed	p.T182I	1.000	350	0%	287	30.3%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10291102	10291102	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130823.1	-1	reviewed	p.A123	0.764	144	0%	151	41.1%	-	-	-	-	-	NULL
S1PR2	9294	genome.wustl.edu	37	19	10334704	10334704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004230.3	-1	validated	p.R293Q	1.000	39	0%	73	35.6%	-	-	benign(0.151)	deleterious(0.02)	neutral(0.397)	superfamily_SSF81321
MRPL4	51073	genome.wustl.edu	37	19	10363313	10363313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015956.2	+1	reviewed	p.G71C	0.659	12	0%	28	28.6%	-	-	possibly_damaging(0.887)	deleterious(0.04)	deleterious(0.696)	superfamily_Ribosomal protein L4
KEAP1	9817	genome.wustl.edu	37	19	10602601	10602601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012289.3	-1	reviewed	p.R326H	1.000	11	0%	26	23.1%	-	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_Kelch_1,superfamily_Gal_oxid_central
KEAP1	9817	genome.wustl.edu	37	19	10610427	10610427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012289.3	-1	reviewed	p.A95T	1.000	28	0%	57	33.3%	-	-	benign(0.076)	tolerated(0.09)	neutral(0.302)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KEAP1	9817	genome.wustl.edu	37	19	10610561	10610561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012289.3	-1	reviewed	p.R50H	1.000	12	0%	23	21.7%	-	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
S1PR5	53637	genome.wustl.edu	37	19	10625345	10625345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030760.4	-1	validated	p.V115I	1.000	8	0.000	16	0.438	-	-	possibly_damaging(0.893)	tolerated(0.24)	neutral(0.389)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KRI1	65095	genome.wustl.edu	37	19	10670065	10670065	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023008.3	-1	validated	p.F394	0.949	82	0%	138	40.6%	-	-	-	-	-	HMMPfam_Kri1
AP1M2	10053	genome.wustl.edu	37	19	10689640	10689640	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005498.4	-1	reviewed	e8-1	1.000	88	0%	110	30%	-	-	-	-	-	-
SLC44A2	57153	genome.wustl.edu	37	19	10736939	10736939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020428.3	+1	validated	p.Q16H	0.998	103	0%	217	35.9%	-	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
ILF3	3609	genome.wustl.edu	37	19	10794618	10794618	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017620.2	+1	reviewed	p.Y681	0.813	135	0%	240	13.3%	-	-	-	-	-	NULL
ILF3	3609	genome.wustl.edu	37	19	10798323	10798323	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017620.2	+1	reviewed	p.S791	0.172	21	0%	49	30.6%	-	-	-	-	-	NULL
QTRT1	81890	genome.wustl.edu	37	19	10822957	10822957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031209.2	+1	validated	p.R256Q	1.000	25	0%	52	21.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
SMARCA4	6597	genome.wustl.edu	37	19	11118598	11118598	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128849.1	+1	reviewed	p.P674	0.423	56	0%	61	41%	-	-	-	-	-	superfamily_SSF52540
SMARCA4	6597	genome.wustl.edu	37	19	11132466	11132466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128849.1	+1	reviewed	p.T894	0.343	41	0%	72	38.9%	-	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
SMARCA4	6597	genome.wustl.edu	37	19	11138618	11138618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128849.1	+1	reviewed	p.R1125M	1.000	109	0%	166	44%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
SMARCA4	6597	genome.wustl.edu	37	19	11150219	11150219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128849.1	+1	reviewed	p.R1419H	0.010	84	0%	195	45.6%	-	-	benign(0.01)	tolerated(0.16)	neutral(0.060)	NULL
KANK2	25959	genome.wustl.edu	37	19	11289065	11289065	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136191.2	-1	validated	p.P492	0.000	7	0.000	25	0.320	-	-	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11347491	11347491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020812.2	-1	validated	p.A713V	0.997	21	0%	42	45.2%	-	-	benign(0.084)	tolerated(0.11)	neutral(0.278)	NULL
CCDC159	126075	genome.wustl.edu	37	19	11462790	11462790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080503.2	+1	validated	p.T183M	0.680	152	0%	301	34.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RGL3	57139	genome.wustl.edu	37	19	11517490	11517490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001035223.2	-1	validated	p.A230T	0.000	25	0%	49	16.3%	-	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Ras GEF
ZNF823	55552	genome.wustl.edu	37	19	11832890	11832890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080493.2	-1	validated	p.S487P	0.000	151	0%	96	34.4%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF491	126069	genome.wustl.edu	37	19	11917167	11917167	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152356.3	+1	validated	p.C133	0.157	183	0%	146	11%	-	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF700	90592	genome.wustl.edu	37	19	12059714	12059714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144566.1	+1	provisional	p.S292F	0.000	142	0%	87	33.3%	-	-	possibly_damaging(0.804)	tolerated(0.34)	neutral(0.326)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155813	12155813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080404.1	-1	inferred	p.R182G	0.754	190	0%	214	47.7%	-	-	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12157538	12157538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080404.1	-1	inferred	p.T61I	0.979	300	0%	321	32.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF442	79973	genome.wustl.edu	37	19	12460540	12460540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030824.2	-1	validated	p.R620M	0.000	169	0%	77	37.7%	-	-	possibly_damaging(0.525)	deleterious(0)	deleterious(0.621)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461725	12461725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030824.2	-1	validated	p.R225H	0.000	291	0%	116	43.1%	-	-	benign(0.008)	tolerated(0.7)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12502452	12502452	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080821.1	-1	validated	p.E254*	0.000	272	0%	134	35.8%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576018	12576018	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152601.3	-1	validated	p.R240*	0.000	125	0%	153	34%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12577665	12577665	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152601.3	-1	validated	e2-1	0.997	281	0%	373	30%	-	-	-	-	-	-
BEST2	54831	genome.wustl.edu	37	19	12866525	12866525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017682.2	+1	reviewed	p.L271M	1.000	150	0%	277	38.6%	-	-	possibly_damaging(0.555)	tolerated(0.06)	deleterious(0.512)	HMMPfam_Bestrophin
HOOK2	29911	genome.wustl.edu	37	19	12878663	12878663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013312.2	-1	validated	p.A424T	0.947	27	0%	43	30.2%	-	-	benign(0.008)	tolerated(0.6)	neutral(0.004)	HMMPfam_HOOK
MAST1	22983	genome.wustl.edu	37	19	12980050	12980050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014975.2	+1	validated	p.R982C	1.000	60	0%	119	38.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PDZ,superfamily_PDZ
GADD45GIP1	90480	genome.wustl.edu	37	19	13065170	13065170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052850.2	-1	provisional	p.R174H	1.000	40	0%	90	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CR6_interact
NACC1	112939	genome.wustl.edu	37	19	13249014	13249014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052876.2	+1	validated	p.A460T	1.000	46	0%	85	43.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BEN
CACNA1A	773	genome.wustl.edu	37	19	13340964	13340964	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127222.1	-1	reviewed	p.S1820	0.981	175	0%	256	30.9%	-	-	-	-	-	NULL
CCDC130	81576	genome.wustl.edu	37	19	13869787	13869787	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030818.2	+1	provisional	p.R121	1.000	9	0.000	24	0.375	-	-	-	-	-	HMMPfam_DUF572
MRI1	84245	genome.wustl.edu	37	19	13879811	13879811	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031727.2	+1	validated	p.R300*	1.000	20	0%	66	40.9%	-	-	-	-	-	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like
DCAF15	90379	genome.wustl.edu	37	19	14071290	14071290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138353.2	+1	provisional	p.S549G	1.000	56	0%	115	40.9%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
LPHN1	22859	genome.wustl.edu	37	19	14273440	14273440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008701.2	-1	reviewed	p.F396	0.850	44	0%	75	45.3%	-	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
ENSG00000248045	0	genome.wustl.edu	37	19	14281373	14281373	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000498856	+1	novel	NULL	0.000	21	0%	38	23.7%	-	-	-	-	-	-
CD97	976	genome.wustl.edu	37	19	14499561	14499561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_078481.2	+1	reviewed	p.A41T	0.002	117	0%	168	34.5%	-	-	benign(0.063)	tolerated(0.26)	neutral(0.038)	HMMSmart_SM00181
EMR2	30817	genome.wustl.edu	37	19	14876366	14876366	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013447.2	-1	reviewed	p.T266	0.994	233	0.4%	337	18.4%	-	-	-	-	-	NULL
OR7A17	26333	genome.wustl.edu	37	19	14991851	14991851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030901.1	-1	provisional	p.L106H	0.000	209	0%	79	41.8%	-	-	benign(0.107)	deleterious(0.03)	neutral(0.373)	HMMPfam_7tm_1,superfamily_SSF81321
SYDE1	85360	genome.wustl.edu	37	19	15224525	15224525	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033025.4	+1	provisional	p.G653	0.985	22	0%	50	44%	-	-	-	-	-	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15271802	15271802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000435.2	-1	reviewed	p.A2213T	0.177	6	0.000	26	0.423	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
NOTCH3	4854	genome.wustl.edu	37	19	15276621	15276621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000435.2	-1	reviewed	p.A1882T	1.000	17	0%	44	36.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15299983	15299983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000435.2	-1	reviewed	p.A399T	0.998	25	0%	45	33.3%	-	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
BRD4	23476	genome.wustl.edu	37	19	15366237	15366237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058243.2	-1	reviewed	p.R640W	0.586	58	0%	100	32%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
BRD4	23476	genome.wustl.edu	37	19	15367969	15367969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058243.2	-1	reviewed	p.R453C	1.000	16	0%	20	25%	-	-	possibly_damaging(0.891)	tolerated(0.1)	deleterious(0.637)	HMMSmart_SM00297,superfamily_Bromodomain
AKAP8L	26993	genome.wustl.edu	37	19	15512365	15512365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014371.2	-1	validated	p.D138N	1.000	34	0%	64	46.9%	-	-	probably_damaging(0.981)	tolerated(0.59)	neutral(0.430)	NULL
AKAP8L	26993	genome.wustl.edu	37	19	15521386	15521386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014371.2	-1	validated	p.E11D	1.000	129	0%	108	33.3%	-	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
WIZ	58525	genome.wustl.edu	37	19	15535838	15535838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021241.2	-1	validated	p.E539K	1.000	6	0.000	10	0.500	-	-	unknown(0)	deleterious(0.01)	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15538304	15538304	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021241.2	-1	validated	p.F190	1.000	14	0%	25	48%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
WIZ	58525	genome.wustl.edu	37	19	15559017	15559017	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021241.2	-1	validated	p.A34	0.959	21	0%	48	52.1%	-	-	-	-	-	NULL
RASAL3	64926	genome.wustl.edu	37	19	15571019	15571019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022904.1	-1	validated	p.R219	0.798	196	0%	324	35.5%	-	-	-	-	-	NULL
PGLYRP2	114770	genome.wustl.edu	37	19	15586706	15586707	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052890.3	-1	validated	p.T258fs	0.879:0.985	-	-	-	-	-	-	-	-	-	NULL
PGLYRP2	114770	genome.wustl.edu	37	19	15586938	15586938	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052890.3	-1	validated	p.T181	0.000	78	0%	85	25.9%	-	-	-	-	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15648394	15648394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173483.3	+1	reviewed	p.R157H	1.000	83	0%	75	13.3%	-	-	possibly_damaging(0.644)	deleterious(0.02)	deleterious(0.609)	HMMPfam_p450,superfamily_Cytochrome_P450
LOC100287986	100287986	genome.wustl.edu	37	19	15687490	15687490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343618.1	-1	model	p.S698P	0.948	34	0%	25	40%	-	-	-	-	-	NULL
CYP4F3	4051	genome.wustl.edu	37	19	15763421	15763421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000896.2	+1	reviewed	p.E321*	1.000	207	0%	180	36.1%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F3	4051	genome.wustl.edu	37	19	15770177	15770177	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000896.2	+1	reviewed	p.R515	0.997	40	0%	65	35.4%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F12	66002	genome.wustl.edu	37	19	15784393	15784393	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023944.2	+1	reviewed	p.P18	0.009	49	0%	58	43.1%	-	-	-	-	-	NULL
CYP4F12	66002	genome.wustl.edu	37	19	15807844	15807844	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023944.2	+1	reviewed	p.A508	0.136	44	0%	54	35.2%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
OR10H5	284433	genome.wustl.edu	37	19	15905333	15905333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004466.1	+1	provisional	p.V159M	0.122	185	0%	214	32.7%	-	-	probably_damaging(0.976)	tolerated(0.26)	neutral(0.452)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF861P	100302737	genome.wustl.edu	37	19	15934568	15934568	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000292633	-1	known	e1+2	0.441	167	0%	68	25%	-	-	-	-	-	-
CYP4F2	8529	genome.wustl.edu	37	19	15989624	15989624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001082.3	-1	reviewed	p.R507H	0.992	41	0%	71	28.2%	-	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F11	57834	genome.wustl.edu	37	19	16035674	16035674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128932.1	-1	reviewed	p.A182S	0.000	99	0%	100	35%	-	-	benign(0.002)	tolerated(0.36)	neutral(0.020)	HMMPfam_p450,superfamily_Cytochrome P450
OR10H4	126541	genome.wustl.edu	37	19	16060269	16060269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004465.1	+1	validated	p.A151D	0.016	351	0%	130	20.8%	-	-	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	HMMPfam_7tm_1,superfamily_SSF81321
TPM4	7171	genome.wustl.edu	37	19	16192765	16192765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145160.1	+1	reviewed	p.V95I	0.996	48	0%	50	10%	-	-	possibly_damaging(0.524)	tolerated(0.15)	neutral(0.417)	HMMPfam_Tropomyosin
TPM4	7171	genome.wustl.edu	37	19	16198909	16198909	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145160.1	+1	reviewed	e5+2	1.000	130	0%	178	34.3%	-	-	-	-	-	-
CIB3	117286	genome.wustl.edu	37	19	16278952	16278952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_054113.2	-1	reviewed	p.I114M	0.945	48	0%	65	33.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_EF-hand
AP1M1	8907	genome.wustl.edu	37	19	16319881	16319881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130524.1	+1	reviewed	p.P147T	1.000	103	0%	124	33.1%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
AP1M1	8907	genome.wustl.edu	37	19	16338361	16338361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130524.1	+1	reviewed	p.G238S	0.999	41	0%	99	46.5%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_Adap_comp_sub,superfamily_AP50
AP1M1	8907	genome.wustl.edu	37	19	16344306	16344306	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130524.1	+1	reviewed	p.G362	0.104	21	0%	43	23.3%	-	-	-	-	-	HMMPfam_Adap_comp_sub,superfamily_AP50
AP1M1	8907	genome.wustl.edu	37	19	16345014	16345014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130524.1	+1	reviewed	p.R405H	1.000	45	0%	89	38.2%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMPfam_Adap_comp_sub,superfamily_AP50
EPS15L1	58513	genome.wustl.edu	37	19	16539558	16539558	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021235.1	-1	provisional	p.S171	1.000	64	0%	68	36.8%	-	-	-	-	-	HMMSmart_EH,HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
CALR3	125972	genome.wustl.edu	37	19	16594828	16594828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145046.3	-1	validated	p.E197D	1.000	255	0%	290	33.1%	-	-	benign(0.023)	tolerated(0.07)	neutral(0.320)	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl
C19orf44	84167	genome.wustl.edu	37	19	16611749	16611749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032207.2	+1	validated	p.R49I	0.998	68	0%	78	30.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHERP	10523	genome.wustl.edu	37	19	16631686	16631686	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006387.5	-1	validated	p.R718*	1.000	72	0%	130	35.4%	-	-	-	-	-	NULL
MED26	9441	genome.wustl.edu	37	19	16688320	16688320	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004831.3	-1	validated	p.G107	0.637	14	0%	49	44.9%	-	-	-	-	-	NULL
SIN3B	23309	genome.wustl.edu	37	19	16952773	16952773	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015260.1	+1	provisional	p.T192	0.243	38	0%	57	35.1%	-	-	-	-	-	HMMPfam_PAH,superfamily_PAH2 domain
SIN3B	23309	genome.wustl.edu	37	19	16973291	16973291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015260.1	+1	provisional	p.R396H	1.000	59	0%	107	29.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HDAC_interact,HMMSmart_SM00761
SIN3B	23309	genome.wustl.edu	37	19	16977266	16977266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015260.1	+1	provisional	p.L601F	1.000	35	0%	61	54.1%	-	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
SIN3B	23309	genome.wustl.edu	37	19	16989037	16989037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015260.1	+1	provisional	p.R1032W	0.999	26	0%	62	38.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MYO9B	4650	genome.wustl.edu	37	19	17283598	17283598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004145.3	+1	reviewed	p.R656W	1.000	16	0%	53	22.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO9B	4650	genome.wustl.edu	37	19	17317184	17317184	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004145.3	+1	reviewed	p.V1795	0.000	12	0%	39	28.2%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
USHBP1	83878	genome.wustl.edu	37	19	17369128	17369128	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031941.3	-1	validated	p.D371	0.000	25	0%	71	38%	-	-	-	-	-	NULL
PLVAP	83483	genome.wustl.edu	37	19	17487813	17487813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031310.1	-1	provisional	p.K95N	0.541	113	0%	166	10.8%	-	-	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	HMMPfam_PV-1
PLVAP	83483	genome.wustl.edu	37	19	17487898	17487898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031310.1	-1	provisional	p.A67D	0.986	86	0%	136	11.8%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_PV-1
BST2	684	genome.wustl.edu	37	19	17514945	17514945	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004335.2	-1	reviewed	p.R136*	0.000	57	0%	72	40.3%	-	-	-	-	-	NULL
BST2	684	genome.wustl.edu	37	19	17516282	17516282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004335.2	-1	reviewed	p.V35M	0.000	101	0%	98	26.5%	-	-	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17611569	17611569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198580.1	+1	provisional	p.R507H	0.998	57	0%	100	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
GLT25D1	79709	genome.wustl.edu	37	19	17691611	17691611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024656.2	+1	provisional	p.V500M	0.982	47	0%	70	35.7%	-	-	benign(0.027)	tolerated(0.15)	neutral(0.242)	HMMPfam_Glyco_transf_25
MAP1S	55201	genome.wustl.edu	37	19	17838478	17838478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018174.4	+1	validated	p.S762I	0.049	9	0.000	21	0.429	-	-	benign(0.048)	tolerated(0.24)	neutral(0.041)	NULL
JAK3	3718	genome.wustl.edu	37	19	17937711	17937711	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000215.3	-1	reviewed	p.E1072	0.998	34	0%	70	42.9%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
JAK3	3718	genome.wustl.edu	37	19	17946813	17946813	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000215.3	-1	reviewed	p.L612	0.999	73	0%	116	10.3%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
JAK3	3718	genome.wustl.edu	37	19	17952490	17952490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000215.3	-1	reviewed	p.H315Y	1.000	39	0%	78	44.9%	-	-	possibly_damaging(0.811)	tolerated(0.1)	deleterious(0.592)	NULL
RPL18A	6142	genome.wustl.edu	37	19	17972175	17972175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000980.2	+1	reviewed	p.R31Q	0.999	67	0%	139	31.7%	-	-	benign(0.026)	tolerated(0.12)	neutral(0.262)	HMMPfam_Ribosomal_L18ae
KCNN1	3780	genome.wustl.edu	37	19	18096188	18096188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002248.3	+1	reviewed	p.L329I	1.000	110	0%	168	33.9%	-	-	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
ARRDC2	27106	genome.wustl.edu	37	19	18119524	18119524	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015683.1	+1	validated	p.T93	0.005	29	3.4%	64	48.4%	-	-	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
IL12RB1	3594	genome.wustl.edu	37	19	18173009	18173009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005535.1	-1	reviewed	p.G566D	0.290	65	0%	115	40.9%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18376914	18376914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145304.1	-1	validated	p.T479I	0.001	156	0%	313	33.2%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18377624	18377624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145304.1	-1	validated	p.T242	0.000	86	0%	149	16.8%	-	-	-	-	-	NULL
LRRC25	126364	genome.wustl.edu	37	19	18502932	18502932	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145256.2	-1	validated	p.A261	0.000	75	0%	111	36%	-	-	-	-	-	NULL
ISYNA1	51477	genome.wustl.edu	37	19	18547671	18547671	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016368.4	-1	validated	p.S144	0.746	6	0.000	24	0.250	-	-	-	-	-	HMMPfam_NAD_binding_5,superfamily_NAD(P)-binding Rossmann-fold domains
ELL	8178	genome.wustl.edu	37	19	18557221	18557221	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006532.3	-1	validated	p.S534	0.811	30	0%	62	22.6%	-	-	-	-	-	HMMPfam_Occludin_ELL
FKBP8	23770	genome.wustl.edu	37	19	18643066	18643066	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012181.3	-1	reviewed	e8-1	1.000	48	0%	88	37.5%	-	-	-	-	-	-
CRTC1	23373	genome.wustl.edu	37	19	18885715	18885715	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098482.1	+1	validated	p.T493	0.979	34	0%	100	33%	-	-	-	-	-	NULL
UPF1	5976	genome.wustl.edu	37	19	18967089	18967089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002911.3	+1	reviewed	p.A602T	0.988	21	0%	67	25.4%	-	-	benign(0.018)	tolerated(0.32)	neutral(0.025)	superfamily_SSF52540
NCAN	1463	genome.wustl.edu	37	19	19329873	19329873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004386.2	+1	validated	p.R75W	0.998	20	0%	31	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,superfamily_SSF48726
NCAN	1463	genome.wustl.edu	37	19	19351488	19351488	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004386.2	+1	validated	p.T1162	0.697	47	0%	56	17.9%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
HAPLN4	404037	genome.wustl.edu	37	19	19371649	19371649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023002.2	-1	validated	p.A153S	0.998	22	0%	44	29.5%	-	-	benign(0.001)	tolerated(1)	-	HMMSmart_SM00409,superfamily_Immunoglobulin
TM6SF2	53345	genome.wustl.edu	37	19	19380936	19380936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000431465	-1	known	p.V172G	0.000	19	0%	32	50%	-	-	unknown(0)	-	-	NULL
SUGP1	57794	genome.wustl.edu	37	19	19416873	19416873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_172231.2	-1	validated	p.S108N	0.587	7	0.000	19	0.316	-	-	probably_damaging(0.955)	tolerated(0.24)	neutral(0.436)	NULL
TSSK6	83983	genome.wustl.edu	37	19	19625834	19625834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032037.2	-1	validated	p.D135N	1.000	21	0%	17	52.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CILP2	148113	genome.wustl.edu	37	19	19653420	19653420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153221.2	+1	validated	p.G277R	0.124	40	0%	83	32.5%	-	-	benign(0.006)	tolerated(0.28)	neutral(0.032)	superfamily_CarboxypepD_reg
CILP2	148113	genome.wustl.edu	37	19	19656594	19656594	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153221.2	+1	validated	p.C1080	1.000	16	0%	27	55.6%	-	-	-	-	-	NULL
ZNF14	7561	genome.wustl.edu	37	19	19823098	19823098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021030.2	-1	reviewed	p.G331E	0.893	83	0%	29	20.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF57667
ZNF253	56242	genome.wustl.edu	37	19	20002480	20002480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021047.2	+1	provisional	p.E142*	0.021	237	0%	85	41.2%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF90	7643	genome.wustl.edu	37	19	20228736	20228736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007138.1	+1	validated	p.V125L	0.003	312	0%	141	34%	-	-	benign(0.035)	tolerated(0.55)	neutral(0.009)	NULL
ZNF90	7643	genome.wustl.edu	37	19	20229797	20229797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007138.1	+1	validated	p.E478D	1.000	132	0%	80	38.8%	-	-	benign(0.183)	deleterious(0.04)	neutral(0.366)	superfamily_SSF57667
ZNF66P	7617	genome.wustl.edu	37	19	20989236	20989236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000425625	+1	known	p.R323I	0.981	76	0%	21	42.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21240040	21240040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025189.3	+1	validated	p.R309I	0.837	42	0%	38	28.9%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF708	7562	genome.wustl.edu	37	19	21476838	21476838	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021269.2	-1	validated	p.C310	0.344	60	0%	30	33.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF738	148203	genome.wustl.edu	37	19	21558075	21558075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000311015	+1	known	p.F44L	0.995	265	0%	100	41%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF429	353088	genome.wustl.edu	37	19	21719685	21719685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001415.2	+1	provisional	p.R277I	1.000	68	0%	46	32.6%	-	-	benign(0.273)	tolerated(0.29)	neutral(0.058)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF429	353088	genome.wustl.edu	37	19	21719752	21719752	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001415.2	+1	provisional	p.T299	0.000	58	0%	37	37.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF43	7594	genome.wustl.edu	37	19	21991777	21991777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003423.2	-1	validated	p.F354L	0.001	112	0%	28	14.3%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992456	21992456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003423.2	-1	validated	p.R128K	0.006	163	0%	75	12%	-	-	benign(0.001)	tolerated(1)	-	NULL
ZNF43	7594	genome.wustl.edu	37	19	21992577	21992577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003423.2	-1	validated	p.P88S	0.038	92	0%	39	41%	-	-	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	NULL
ZNF208	7757	genome.wustl.edu	37	19	22154882	22154882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007153.3	-1	provisional	p.F857Y	0.000	136	0%	18	27.8%	-	-	probably_damaging(0.98)	tolerated(1)	neutral(0.424)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157270	22157270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007153.3	-1	provisional	p.S189Y	0.000	283	0%	44	31.8%	-	-	possibly_damaging(0.707)	tolerated(0.06)	deleterious(0.578)	NULL
ZNF676	163223	genome.wustl.edu	37	19	22363360	22363360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001411.2	-1	provisional	p.H387N	0.998	158	0%	36	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100130518	100130518	genome.wustl.edu	37	19	22486659	22486659	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001719773.2	+1	model	p.E72*	0.026	250	0%	85	28.2%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC100287226	100287226	genome.wustl.edu	37	19	22498162	22498162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343636.1	+1	model	p.A515E	0.092	67	0%	25	36%	-	-	possibly_damaging(0.832)	tolerated(0.3)	neutral(0.346)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574844	22574844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098626.1	-1	validated	p.R398I	1.000	125	0%	53	18.9%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000235276	0	genome.wustl.edu	37	19	22782564	22782564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000421840	+1	known	p.E54D	1.000	35	0%	33	27.3%	-	-	-	-	-	NULL
ENSG00000213974	0	genome.wustl.edu	37	19	22785181	22785181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000397112	+1	known	p.R42H	0.001	8	0.000	13	0.308	-	-	-	-	-	NULL
ZNF492	57615	genome.wustl.edu	37	19	22847205	22847205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020855.2	+1	validated	p.R245I	0.956	120	0%	37	56.8%	-	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22940896	22940896	+	Missense_Mutation	SNP	G	G	T	rs79080989		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080409.1	-1	provisional	p.F514L	0.000	76	0%	28	42.9%	-	-	possibly_damaging(0.58)	tolerated(0.68)	neutral(0.201)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF91	7644	genome.wustl.edu	37	19	23542324	23542324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003430.2	-1	validated	p.K1153E	0.928	91	0%	96	32.3%	-	-	possibly_damaging(0.892)	tolerated(0.34)	neutral(0.374)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23544016	23544016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003430.2	-1	validated	p.L589I	0.000	84	0%	48	47.9%	-	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23557536	23557536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003430.2	-1	validated	p.E21*	0.449	275	0%	219	33.8%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF675	171392	genome.wustl.edu	37	19	23837076	23837076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138330.2	-1	validated	p.R220I	1.000	112	0%	42	42.9%	-	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RPSAP58	388524	genome.wustl.edu	37	19	24010582	24010582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000354585	+1	known	p.P207S	1.000	60	0%	73	37%	-	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
ENSG00000104777	0	genome.wustl.edu	37	19	24140678	24140678	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000300996	-1	known	NULL	0.042	58	0%	50	42%	-	-	-	-	-	-
VSTM2B	342865	genome.wustl.edu	37	19	30054821	30054821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000335523	+1	known	p.R280C	0.087	115	0%	120	37.5%	-	-	unknown(0)	tolerated(0.16)	-	NULL
URI1	8725	genome.wustl.edu	37	19	30477300	30477300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003796.2	+1	reviewed	p.G115C	0.428	138	0%	85	40%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Prefoldin,superfamily_Prefoldin
ZNF536	9745	genome.wustl.edu	37	19	30935740	30935740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014717.1	+1	provisional	p.A424D	1.000	10	0%	21	61.9%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ZNF536	9745	genome.wustl.edu	37	19	31040309	31040309	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014717.1	+1	provisional	p.P1261	0.681	14	0%	21	23.8%	-	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31767495	31767495	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020856.2	-1	validated	p.P1068	0.013	219	0%	178	37.1%	-	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768294	31768294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020856.2	-1	validated	p.S802F	1.000	168	0%	182	11%	-	-	benign(0.256)	tolerated(0.19)	neutral(0.076)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769346	31769346	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020856.2	-1	validated	p.T451	0.021	147	0%	178	38.8%	-	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769786	31769786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020856.2	-1	validated	p.L305M	1.000	162	0%	185	40%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32843945	32843945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136156.1	+1	validated	p.R70H	1.000	99	0%	94	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33106671	33106671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032139.2	-1	validated	p.E690K	1.000	43	0%	88	33%	-	-	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	HMMPfam_Ank,superfamily_ANK
TDRD12	91646	genome.wustl.edu	37	19	33233787	33233787	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110822.1	+1	validated	p.R141*	1.000	159	0%	108	30.6%	-	-	-	-	-	NULL
CEP89	84902	genome.wustl.edu	37	19	33378749	33378749	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032816.3	-1	validated	e17-2	0.983	222	0%	202	34.7%	-	-	-	-	-	-
CEP89	84902	genome.wustl.edu	37	19	33422331	33422331	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427840	-1	known	p.T345S	0.572	88	0%	82	35.4%	-	-	-	-	-	NULL
GPATCH1	55094	genome.wustl.edu	37	19	33608886	33608886	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018025.2	+1	provisional	p.G784	0.005	50	0%	56	26.8%	-	-	-	-	-	NULL
WDR88	126248	genome.wustl.edu	37	19	33635777	33635777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173479.3	+1	validated	p.D139N	0.000	90	0%	133	35.3%	-	-	benign(0.052)	tolerated(0.25)	neutral(0.040)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SLC7A10	56301	genome.wustl.edu	37	19	33706779	33706779	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019849.2	-1	validated	p.G84	0.930	16	0%	54	44.4%	-	-	-	-	-	HMMPfam_AA_permease
GRAMD1A	57655	genome.wustl.edu	37	19	35514373	35514373	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020895.3	+1	validated	p.A668	0.999	25	0%	70	18.6%	-	-	-	-	-	NULL
HPN	3249	genome.wustl.edu	37	19	35556452	35556452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002151.2	+1	reviewed	p.A306V	1.000	38	0%	54	25.9%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
FXYD3	5349	genome.wustl.edu	37	19	35612135	35612135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136007.1	+1	reviewed	p.S85N	1.000	144	0.7%	261	45.6%	-	-	benign(0.082)	deleterious(0.05)	neutral(0.351)	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD
FXYD7	53822	genome.wustl.edu	37	19	35639726	35639726	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000439441	+1	known	p.L35	0.035	141	0%	185	32.4%	-	-	-	-	-	NULL
FXYD5	53827	genome.wustl.edu	37	19	35646453	35646453	+	Splice_Site	SNP	G	G	T	rs112880548	byCluster	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014164.5	+1	reviewed	e1-1	0.992	45	0%	69	44.9%	-	-	-	-	-	-
LSR	51599	genome.wustl.edu	37	19	35757635	35757635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205834.2	+1	validated	p.A384T	0.000	45	0%	122	11.5%	-	-	benign(0.066)	tolerated(0.33)	neutral(0.029)	NULL
USF2	7392	genome.wustl.edu	37	19	35769679	35769679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003367.2	+1	reviewed	p.N269T	0.977	45	0%	86	29.1%	-	-	benign(0.003)	tolerated(0.47)	neutral(0.011)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
USF2	7392	genome.wustl.edu	37	19	35769912	35769912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003367.2	+1	reviewed	p.R296C	1.000	24	0%	53	30.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MAG	4099	genome.wustl.edu	37	19	35791085	35791085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002361.2	+1	reviewed	p.E250K	1.000	8	0.000	24	0.208	-	-	benign(0.156)	deleterious(0.03)	neutral(0.379)	HMMPfam_I-set,superfamily_SSF48726
GAPDHS	26330	genome.wustl.edu	37	19	36034584	36034584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014364.4	+1	reviewed	p.A304V	0.999	22	0%	53	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gp_dh_C,superfamily_SSF55347
TMEM147	10430	genome.wustl.edu	37	19	36036826	36036826	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032635.2	+1	provisional	p.A38	0.805	44	0%	72	34.7%	-	-	-	-	-	HMMPfam_DUF2053
ZBTB32	27033	genome.wustl.edu	37	19	36205877	36205877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014383.1	+1	provisional	p.A117T	0.000	38	0%	88	29.5%	-	-	possibly_damaging(0.842)	deleterious(0.03)	deleterious(0.686)	HMMSmart_BTB,HMMPfam_BTB
MLL4	9757	genome.wustl.edu	37	19	36219692	36219692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014727.1	+1	reviewed	p.A1530V	1.000	47	0%	109	34.9%	-	-	possibly_damaging(0.792)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36221482	36221482	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014727.1	+1	reviewed	p.S1747	0.154	107	0%	182	34.6%	-	-	-	-	-	HMMPfam_FYRN,HMMSmart_SM00541
MLL4	9757	genome.wustl.edu	37	19	36222944	36222944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014727.1	+1	reviewed	p.R1858H	1.000	28	0%	55	40%	-	-	probably_damaging(0.989)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36223929	36223929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014727.1	+1	reviewed	p.T2160I	1.000	7	0.000	25	0.360	-	-	possibly_damaging(0.922)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36229209	36229209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014727.1	+1	reviewed	p.M2633I	1.000	74	0%	124	38.7%	-	-	benign(0.03)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
IGFLR1	79713	genome.wustl.edu	37	19	36230875	36230875	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024660.2	-1	provisional	p.V153L	0.000	36	0%	92	31.5%	-	-	unknown(0)	tolerated(0.2)	-	NULL
ENSG00000247203	0	genome.wustl.edu	37	19	36244267	36244267	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000501632	-1	novel	NULL	0.000	13	0%	18	27.8%	-	-	-	-	-	-
ARHGAP33	115703	genome.wustl.edu	37	19	36271946	36271946	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052948.3	+1	reviewed	p.G318	0.750	20	0%	32	31.2%	-	-	-	-	-	superfamily_Rho_GAP
PRODH2	58510	genome.wustl.edu	37	19	36303602	36303602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021232.1	-1	reviewed	p.E112K	0.959	24	0%	46	30.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APLP1	333	genome.wustl.edu	37	19	36365713	36365713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001024807.1	+1	reviewed	p.R429H	0.409	11	0%	35	25.7%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
CLIP3	25999	genome.wustl.edu	37	19	36510196	36510196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015526.1	-1	provisional	p.R311W	1.000	28	0%	60	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
THAP8	199745	genome.wustl.edu	37	19	36530435	36530435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152658.2	-1	provisional	p.A154	0.000	62	0%	129	28.7%	-	-	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36590402	36590402	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083961.1	+1	validated	p.K874	1.000	23	0%	40	25%	-	-	-	-	-	NULL
ZNF565	147929	genome.wustl.edu	37	19	36674373	36674373	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042474.1	-1	validated	p.K165	0.961	239	0%	158	41.1%	-	-	-	-	-	superfamily_SSF57667
ZNF382	84911	genome.wustl.edu	37	19	37100578	37100578	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000455093	+1	known	e1+1	0.001	8	0.000	11	0.727	-	-	-	-	-	-
ZNF790	388536	genome.wustl.edu	37	19	37309846	37309846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206894.2	-1	validated	p.R467Q	0.000	150	0%	52	42.3%	-	-	possibly_damaging(0.873)	tolerated(0.83)	neutral(0.340)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF790	388536	genome.wustl.edu	37	19	37310991	37310991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206894.2	-1	validated	p.K85N	0.082	84	0%	33	33.3%	-	-	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	NULL
ZNF790	388536	genome.wustl.edu	37	19	37314210	37314210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_206894.2	-1	validated	p.D69G	0.005	109	0%	62	35.5%	-	-	probably_damaging(0.988)	tolerated(0.11)	deleterious(0.709)	NULL
ZNF568	374900	genome.wustl.edu	37	19	37441228	37441228	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198539.2	+1	validated	p.K391	0.313	88	0%	41	29.3%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37618957	37618957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144689.3	+1	provisional	p.R355M	1.000	137	0%	47	36.2%	-	-	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37676708	37676708	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152279.3	-1	validated	p.P577	0.070	207	0%	106	34.9%	-	-	-	-	-	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677451	37677451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152279.3	-1	validated	p.E330K	0.256	310	0%	144	34%	-	-	possibly_damaging(0.481)	deleterious(0.04)	deleterious(0.508)	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37697985	37697985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152279.3	-1	validated	p.K10T	0.001	100	0%	83	39.8%	-	-	unknown(0)	-	-	NULL
ZNF383	163087	genome.wustl.edu	37	19	37734188	37734188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152604.1	+1	provisional	p.G350	0.016	142	0%	62	16.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HKR1	284459	genome.wustl.edu	37	19	37853743	37853743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181786.2	+1	provisional	p.R349L	0.002	114	0%	57	33.3%	-	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF527	84503	genome.wustl.edu	37	19	37879916	37879916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032453.1	+1	validated	p.R322I	0.635	159	0%	60	36.7%	-	-	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38103379	38103379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152606.3	+1	validated	p.R400W	0.001	193	0%	69	30.4%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38103827	38103827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152606.3	+1	validated	p.K549I	0.992	144	0%	40	37.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZFP30	22835	genome.wustl.edu	37	19	38125901	38125901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014898.2	-1	validated	p.R514Q	1.000	139	0%	55	32.7%	-	-	possibly_damaging(0.591)	deleterious(0.01)	deleterious(0.610)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP30	22835	genome.wustl.edu	37	19	38126015	38126015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014898.2	-1	validated	p.R476I	0.565	186	0%	77	11.7%	-	-	probably_damaging(0.998)	tolerated(0.54)	deleterious(0.482)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP30	22835	genome.wustl.edu	37	19	38126751	38126751	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440715	-1	known	e4+1	0.000	154	0%	79	26.6%	-	-	-	-	-	-
ZNF781	163115	genome.wustl.edu	37	19	38160724	38160724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152605.3	-1	validated	p.R109I	1.000	194	0%	125	32.8%	-	-	possibly_damaging(0.541)	tolerated(0.06)	deleterious(0.506)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38190121	38190121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032689.4	-1	validated	p.T304N	1.000	84	0%	54	33.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38190277	38190277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032689.4	-1	validated	p.P252L	0.999	153	0%	62	46.8%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38383923	38383923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031951.3	-1	provisional	p.R768Q	0.000	68	0%	42	35.7%	-	-	possibly_damaging(0.656)	-	-	superfamily_WD40 repeat-like
PSMD8	5714	genome.wustl.edu	37	19	38872859	38872859	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002812.4	+1	reviewed	p.Y302	0.847	41	0%	71	32.4%	-	-	-	-	-	NULL
GGN	199720	genome.wustl.edu	37	19	38877713	38877713	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152657.3	-1	reviewed	p.P63	1.000	48	0%	87	47.1%	-	-	-	-	-	NULL
FAM98C	147965	genome.wustl.edu	37	19	38896211	38896211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174905.3	+1	validated	p.R229H	0.983	89	0%	152	30.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2465
FAM98C	147965	genome.wustl.edu	37	19	38897585	38897585	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174905.3	+1	validated	p.P262	0.291	47	0%	88	42%	-	-	-	-	-	HMMPfam_DUF2465
RASGRP4	115727	genome.wustl.edu	37	19	38904084	38904084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170604.2	-1	reviewed	p.E421K	0.999	33	0%	97	36.1%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_SM00147,superfamily_Ras GEF
RASGRP4	115727	genome.wustl.edu	37	19	38912676	38912676	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_170604.2	-1	reviewed	p.N47	0.638	38	0%	74	29.7%	-	-	-	-	-	superfamily_Ras GEF
RYR1	6261	genome.wustl.edu	37	19	38933033	38933033	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000540.2	+1	reviewed	p.Q70	1.000	63	0%	100	11%	-	-	-	-	-	HMMPfam_Ins145_P3_rec
MAP4K1	11184	genome.wustl.edu	37	19	39108211	39108211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007181.4	-1	validated	p.P52S	1.000	108	0%	171	32.7%	-	-	benign(0.39)	deleterious(0.01)	deleterious(0.530)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ACTN4	81	genome.wustl.edu	37	19	39214947	39214947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004924.3	+1	reviewed	p.T615A	1.000	28	0%	58	31%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
LGALS4	3960	genome.wustl.edu	37	19	39292738	39292738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006149.3	-1	reviewed	p.R240H	0.998	88	0%	149	34.2%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LGALS4	3960	genome.wustl.edu	37	19	39303130	39303130	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006149.3	-1	reviewed	p.G25	0.047	31	0%	50	42%	-	-	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
HNRNPL	3191	genome.wustl.edu	37	19	39334653	39334653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001533.2	-1	reviewed	p.A268T	1.000	196	0%	252	39.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF54928
NFKBIB	4793	genome.wustl.edu	37	19	39395987	39395987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002503.3	+1	validated	p.R144H	0.079	17	0%	33	42.4%	-	-	benign(0.22)	tolerated(0.15)	neutral(0.263)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SARS2	54938	genome.wustl.edu	37	19	39406318	39406318	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017827.3	-1	reviewed	p.H495	0.536	39	0%	65	49.2%	-	-	-	-	-	NULL
MRPS12	6183	genome.wustl.edu	37	19	39423284	39423284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021107.1	+1	reviewed	p.V121I	0.971	12	0%	24	33.3%	-	-	possibly_damaging(0.72)	deleterious(0.03)	deleterious(0.625)	HMMPfam_Ribosomal_S12,superfamily_Nucleic acid-binding proteins
LRFN1	57622	genome.wustl.edu	37	19	39804578	39804578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020862.1	-1	validated	p.V467I	0.995	33	0%	62	27.4%	-	-	possibly_damaging(0.67)	tolerated(0.57)	neutral(0.243)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAF1	54623	genome.wustl.edu	37	19	39880350	39880350	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019088.2	-1	provisional	p.L74	0.935	170	0%	280	13.9%	-	-	-	-	-	HMMPfam_Paf1
PLEKHG2	64857	genome.wustl.edu	37	19	39915442	39915442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022835.2	+1	validated	p.I1223M	0.000	63	0%	107	10.3%	-	-	benign(0.126)	deleterious(0)	neutral(0.455)	NULL
DLL3	10683	genome.wustl.edu	37	19	39998559	39998559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016941.3	+1	reviewed	p.A588V	0.145	58	0%	139	17.3%	-	-	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
DYRK1B	9149	genome.wustl.edu	37	19	40318062	40318062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004714.1	-1	reviewed	p.D320N	1.000	18	0%	55	29.1%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK1B	9149	genome.wustl.edu	37	19	40319120	40319120	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004714.1	-1	reviewed	p.G208	0.190	74	0%	183	40.4%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100289588	100289588	genome.wustl.edu	37	19	40362854	40362854	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343681.1	+1	model	e3+1	1.000	12	0%	23	39.1%	-	-	-	-	-	-
FCGBP	8857	genome.wustl.edu	37	19	40392445	40392445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003890.2	-1	validated	p.D2687Y	0.859	55	0%	87	33.3%	-	-	unknown(0)	tolerated(0.11)	-	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40430327	40430327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003890.2	-1	validated	p.S539Y	0.000	31	0%	85	35.3%	-	-	probably_damaging(0.953)	deleterious(0.05)	deleterious(0.742)	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40434214	40434214	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003890.2	-1	validated	e2-1	0.704	32	0%	39	43.6%	-	-	-	-	-	-
ZNF546	339327	genome.wustl.edu	37	19	40504262	40504262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178544.3	+1	validated	p.P10H	0.000	150	0%	192	35.9%	-	-	benign(0.007)	-	-	NULL
ZNF546	339327	genome.wustl.edu	37	19	40513237	40513237	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178544.3	+1	validated	p.C76	0.078	296	0%	129	38%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF546	339327	genome.wustl.edu	37	19	40520392	40520392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444043	+1	known	p.K21R	1.000	126	0%	40	37.5%	-	-	-	-	-	NULL
ZNF546	339327	genome.wustl.edu	37	19	40521315	40521315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444043	+1	known	p.E217*	1.000	168	0%	56	69.6%	-	-	possibly_damaging(0.651)	deleterious(0.02)	deleterious(0.612)	NULL
ZNF546	339327	genome.wustl.edu	37	19	40521728	40521728	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000392042	+1	known	p.E441*	0.000	20	0.000	6	0.667	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF780B	163131	genome.wustl.edu	37	19	40542296	40542296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005851.2	-1	validated	p.P157H	0.000	266	0.4%	79	39.2%	-	-	benign(0.003)	tolerated(0.39)	neutral(0.016)	superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40580955	40580955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142577.1	-1	validated	p.R466Q	0.005	234	0.4%	77	40.3%	-	-	benign(0.08)	tolerated(0.13)	neutral(0.258)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40581741	40581741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142577.1	-1	validated	p.R204Q	0.001	259	0%	68	36.8%	-	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP3K10	4294	genome.wustl.edu	37	19	40704357	40704357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002446.3	+1	reviewed	p.R253H	1.000	60	0%	93	37.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
LOC100289661	100289661	genome.wustl.edu	37	19	40711982	40711982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343682.1	-1	model	p.P362T	0.753	10	0%	23	30.4%	-	-	-	-	-	NULL
MAP3K10	4294	genome.wustl.edu	37	19	40718824	40718824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002446.3	+1	reviewed	p.K555N	1.000	67	0%	126	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLD3	23646	genome.wustl.edu	37	19	40872714	40872714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031696.2	+1	validated	p.A46V	0.825	25	0%	72	36.1%	-	-	benign(0.073)	tolerated(0.4)	neutral(0.021)	NULL
PLD3	23646	genome.wustl.edu	37	19	40873752	40873752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031696.2	+1	validated	p.N132S	0.996	39	0%	47	42.6%	-	-	benign(0.002)	tolerated(0.71)	neutral(0.002)	superfamily_SSF56024
HIPK4	147746	genome.wustl.edu	37	19	40886692	40886692	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144685.3	-1	provisional	p.A402	0.000	25	0%	50	32%	-	-	-	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40902656	40902656	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181882.2	-1	reviewed	p.E535*	0.978	52	0%	111	24.3%	-	-	-	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40903306	40903306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181882.2	-1	reviewed	p.A318V	0.991	5	0.000	13	0.538	-	-	probably_damaging(0.955)	tolerated(0.14)	deleterious(0.648)	NULL
SERTAD1	29950	genome.wustl.edu	37	19	40928973	40928973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013376.3	-1	validated	p.A161S	1.000	13	0%	36	33.3%	-	-	possibly_damaging(0.711)	tolerated(0.24)	neutral(0.294)	NULL
SHKBP1	92799	genome.wustl.edu	37	19	41096245	41096245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138392.3	+1	validated	p.R562H	1.000	7	0.000	12	0.667	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320
LTBP4	8425	genome.wustl.edu	37	19	41118970	41118970	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000308370	+1	known	e19-1	1.000	55	0%	108	43.5%	-	-	-	-	-	-
LTBP4	8425	genome.wustl.edu	37	19	41132972	41132972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000308370	+1	known	p.D1426Y	0.995	51	0%	131	29.8%	-	-	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	NULL
NUMBL	9253	genome.wustl.edu	37	19	41183161	41183161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004756.3	-1	validated	p.R236*	0.910	22	0%	43	37.2%	-	-	-	-	-	NULL
ADCK4	79934	genome.wustl.edu	37	19	41220017	41220017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024876.3	-1	validated	p.R82C	1.000	71	0%	118	28%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EGLN2	112398	genome.wustl.edu	37	19	41313759	41313759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053046.2	+1	reviewed	p.T405M	0.087	88	0%	217	33.2%	-	-	unknown(0)	deleterious(0)	-	NULL
CYP2B7P1	1556	genome.wustl.edu	37	19	41442333	41442333	+	RNA	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_001278.1	+1	provisional	NULL	0.801	128	0%	98	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
CYP2B6	1555	genome.wustl.edu	37	19	41497256	41497256	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000767.4	+1	reviewed	p.L16	0.001	75	0%	33	27.3%	-	-	-	-	-	NULL
CYP2B6	1555	genome.wustl.edu	37	19	41518645	41518645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000767.4	+1	reviewed	p.A407T	0.000	135	0%	89	39.3%	-	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_p450,superfamily_Cytochrome_P450
HNRNPUL1	11100	genome.wustl.edu	37	19	41778055	41778055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007040.3	+1	reviewed	p.P163S	0.996	79	0%	92	32.6%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
HNRNPUL1	11100	genome.wustl.edu	37	19	41798331	41798331	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007040.3	+1	reviewed	p.L394H	1.000	145	0%	121	33.9%	-	-	probably_damaging(0.954)	tolerated(0.09)	deleterious(0.694)	NULL
HNRNPUL1	11100	genome.wustl.edu	37	19	41810115	41810115	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007040.3	+1	reviewed	p.G737	1.000	86	0%	139	30.9%	-	-	-	-	-	NULL
CCDC97	90324	genome.wustl.edu	37	19	41828546	41828546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052848.1	+1	provisional	p.R320W	0.995	66	0%	146	38.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF2052
BCKDHA	593	genome.wustl.edu	37	19	41928927	41928927	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000709.3	+1	reviewed	p.D340	1.000	38	0%	65	10.8%	-	-	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
CEACAM6	4680	genome.wustl.edu	37	19	42265352	42265352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002483.4	+1	validated	p.R207M	0.772	282	0%	187	38.5%	-	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ARHGEF1	9138	genome.wustl.edu	37	19	42396432	42396432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199002.1	+1	reviewed	p.A134T	0.208	42	0%	66	37.9%	-	-	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
ARHGEF1	9138	genome.wustl.edu	37	19	42399457	42399457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199002.1	+1	reviewed	p.V320M	0.074	20	0%	88	39.8%	-	-	possibly_damaging(0.907)	deleterious(0.03)	deleterious(0.725)	NULL
LOC390937	390937	genome.wustl.edu	37	19	42413516	42413516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_372730.7	-1	model	p.A137V	0.978	10	0%	21	38.1%	-	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
ATP1A3	478	genome.wustl.edu	37	19	42471139	42471139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000441343	-1	known	p.S1092Y	0.761	152	0%	245	40.8%	-	-	unknown(0)	-	-	NULL
ZNF526	116115	genome.wustl.edu	37	19	42730320	42730320	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133444.1	+1	provisional	p.R589*	0.712	76	0%	144	36.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ERF	2077	genome.wustl.edu	37	19	42752959	42752959	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006494.2	-1	validated	p.S435	0.573	14	0%	46	37%	-	-	-	-	-	NULL
MEGF8	1954	genome.wustl.edu	37	19	42859988	42859988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001410.2	+1	validated	p.G1341V	0.887	18	0%	41	29.3%	-	-	possibly_damaging(0.874)	tolerated(0.3)	neutral(0.368)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42872634	42872634	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001410.2	+1	validated	p.R2034*	1.000	4	0.000	17	0.529	-	-	-	-	-	HMMSmart_PSI
CNFN	84518	genome.wustl.edu	37	19	42891561	42891561	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032488.3	-1	validated	p.C60	1.000	8	0.000	20	0.300	-	-	-	-	-	HMMPfam_PLAC8
PSG8	440533	genome.wustl.edu	37	19	43258523	43258523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182707.2	-1	validated	p.G402D	0.007	317	0%	159	11.9%	-	-	possibly_damaging(0.861)	deleterious(0.05)	deleterious(0.678)	superfamily_SSF48726
PSG6	5675	genome.wustl.edu	37	19	43414732	43414732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002782.3	-1	provisional	p.P236S	0.001	187	0%	100	37%	-	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
PSG7	5676	genome.wustl.edu	37	19	43430860	43430860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002783.2	-1	reviewed	p.P240S	0.003	500	0%	198	34.8%	-	-	benign(0.022)	tolerated(0.24)	neutral(0.038)	superfamily_Immunoglobulin
PSG2	5670	genome.wustl.edu	37	19	43579640	43579640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031246.2	-1	validated	p.R192M	0.001	344	0%	202	39.6%	-	-	benign(0.242)	deleterious(0)	deleterious(0.469)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
TEX101	83639	genome.wustl.edu	37	19	43922159	43922159	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031451.4	+1	validated	e5+1	1.000	209	0%	153	39.9%	-	-	-	-	-	-
LOC100287012	100287012	genome.wustl.edu	37	19	44005835	44005835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343684.1	+1	model	p.P16S	0.000	15	0%	26	53.8%	-	-	-	-	-	NULL
ZNF428	126299	genome.wustl.edu	37	19	44112052	44112052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182498.3	-1	validated	p.L95P	1.000	9	0.000	14	0.429	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SRRM5	100170229	genome.wustl.edu	37	19	44116503	44116503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145641.1	+1	validated	p.R77Q	0.000	166	0%	260	33.8%	-	-	benign(0.036)	tolerated(0.21)	neutral(0.046)	NULL
IRGC	56269	genome.wustl.edu	37	19	44222793	44222793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019612.3	+1	validated	p.R28H	0.983	8	0.000	21	0.381	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_IIGP,superfamily_SSF52540
KCNN4	3783	genome.wustl.edu	37	19	44284966	44284966	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002250.2	-1	reviewed	p.K16	0.933	76	0%	117	34.2%	-	-	-	-	-	HMMPfam_SK_channel
ZNF404	342908	genome.wustl.edu	37	19	44377473	44377473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001033719.2	-1	validated	p.P298L	1.000	84	0%	36	22.2%	-	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	superfamily_C2H2 and C2HC zinc fingers
ZNF45	7596	genome.wustl.edu	37	19	44417577	44417577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003425.3	-1	validated	p.F671I	0.059	114	0%	31	45.2%	-	-	benign(0.012)	tolerated(0.34)	neutral(0.024)	NULL
ZNF233	353355	genome.wustl.edu	37	19	44777144	44777144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181756.1	+1	provisional	p.Q111K	0.031	64	0%	41	34.1%	-	-	benign(0.19)	tolerated(0.23)	neutral(0.059)	NULL
ZNF233	353355	genome.wustl.edu	37	19	44777281	44777281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181756.1	+1	provisional	p.N156K	0.000	64	0%	30	36.7%	-	-	possibly_damaging(0.475)	tolerated(0.08)	neutral(0.457)	NULL
ZFP112	7771	genome.wustl.edu	37	19	44833245	44833245	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001083335.1	-1	validated	p.H361	0.704	154	0%	40	30%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
BCAM	4059	genome.wustl.edu	37	19	45314484	45314484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005581.3	+1	reviewed	p.A29T	0.888	152	0%	271	35.4%	-	-	benign(0.118)	tolerated(0.2)	neutral(0.059)	NULL
TOMM40	10452	genome.wustl.edu	37	19	45404515	45404515	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001128916.1	+1	validated	p.S298	0.335	58	0%	135	40.7%	-	-	-	-	-	HMMPfam_Porin_3
APOC4	346	genome.wustl.edu	37	19	45448439	45448439	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001646.1	+1	reviewed	p.D87	0.050	43	0%	62	37.1%	-	-	-	-	-	NULL
RELB	5971	genome.wustl.edu	37	19	45537727	45537727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006509.2	+1	validated	p.S432I	1.000	40	0%	48	37.5%	-	-	possibly_damaging(0.84)	tolerated(0.06)	deleterious(0.644)	superfamily_Ig_E-set
CLASRP	11129	genome.wustl.edu	37	19	45567851	45567851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007056.2	+1	validated	p.A458T	0.092	13	0%	18	33.3%	-	-	unknown(0)	tolerated(0.18)	-	NULL
MARK4	57787	genome.wustl.edu	37	19	45762361	45762361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031417.2	+1	provisional	p.V56M	0.998	31	0%	65	46.2%	-	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	superfamily_Kinase_like
KLC3	147700	genome.wustl.edu	37	19	45848848	45848848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177417.2	+1	reviewed	p.R17C	0.998	6	0.000	14	0.286	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPP1R13L	10848	genome.wustl.edu	37	19	45899489	45899489	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142502.1	-1	validated	p.S280	0.000	35	0%	101	18.8%	-	-	-	-	-	NULL
FOSB	2354	genome.wustl.edu	37	19	45973967	45973967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006732.2	+1	reviewed	p.W69*	1.000	33	0%	66	37.9%	-	-	-	-	-	NULL
PPM1N	147699	genome.wustl.edu	37	19	46003206	46003206	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080401.1	+1	provisional	e2-1	1.000	14	0%	37	43.2%	-	-	-	-	-	-
EML2	24139	genome.wustl.edu	37	19	46122445	46122445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012155.1	-1	provisional	p.H376R	1.000	47	0%	103	33%	-	-	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
GIPR	2696	genome.wustl.edu	37	19	46181365	46181365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000164.2	+1	validated	p.T345A	1.000	32	0%	63	14.3%	-	-	probably_damaging(0.966)	tolerated(0.31)	neutral(0.435)	HMMPfam_7tm_2
DMWD	1762	genome.wustl.edu	37	19	46295581	46295581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004943.1	-1	validated	p.S145N	1.000	17	0%	52	44.2%	-	-	benign(0.362)	deleterious(0.01)	deleterious(0.521)	NULL
IRF2BP1	26145	genome.wustl.edu	37	19	46388582	46388582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015649.1	-1	provisional	p.R151*	0.049	6	0.000	21	0.429	-	-	-	-	-	NULL
NOVA2	4858	genome.wustl.edu	37	19	46457108	46457108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002516.2	-1	validated	p.A109V	0.988	313	0%	385	10.6%	-	-	unknown(0)	tolerated(0.3)	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46807224	46807224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152795.2	+1	reviewed	p.E32D	1.000	5	0.000	21	0.381	-	-	benign(0.224)	tolerated(0.21)	neutral(0.066)	HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
HIF3A	64344	genome.wustl.edu	37	19	46807290	46807290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000420102	+1	known	p.P34L	0.967	4	0.000	22	0.318	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
AP2S1	1175	genome.wustl.edu	37	19	47341794	47341794	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004069.3	-1	reviewed	p.V113	0.961	31	0%	36	33.3%	-	-	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
AP2S1	1175	genome.wustl.edu	37	19	47342728	47342728	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004069.3	-1	reviewed	p.F87	0.997	66	0%	109	45%	-	-	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
ARHGAP35	2909	genome.wustl.edu	37	19	47422678	47422678	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004491.4	+1	reviewed	p.K249T	1.000	96	0%	61	29.5%	-	-	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	HMMPfam_Ras
SAE1	10055	genome.wustl.edu	37	19	47634241	47634241	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005500.2	+1	validated	p.S18N	1.000	26	0%	90	32.2%	-	-	-	-	-	NULL
LOC100287311	100287311	genome.wustl.edu	37	19	47813047	47813047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343688.1	-1	model	p.L200I	0.000	36	0%	39	25.6%	-	-	-	-	-	NULL
LOC100287338	100287338	genome.wustl.edu	37	19	47844140	47844140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343689.1	-1	model	p.A288T	0.005	16	0%	44	36.4%	-	-	-	-	-	NULL
DHX34	9704	genome.wustl.edu	37	19	47856397	47856397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014681.5	+1	reviewed	p.R37H	0.354	28	0%	61	41%	-	-	benign(0.005)	tolerated(0.39)	neutral(0.016)	NULL
KPTN	11133	genome.wustl.edu	37	19	47986421	47986421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007059.2	-1	validated	p.A149V	0.997	74	1.4%	110	37.3%	-	-	possibly_damaging(0.452)	deleterious(0.03)	deleterious(0.512)	NULL
ZNF541	84215	genome.wustl.edu	37	19	48047985	48047985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101419.1	-1	validated	p.P601S	0.020	7	0.000	23	0.478	-	-	benign(0.151)	deleterious(0.04)	neutral(0.362)	NULL
LIG1	3978	genome.wustl.edu	37	19	48643395	48643395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000234.1	-1	reviewed	p.R307Q	1.000	24	0%	42	40.5%	-	-	possibly_damaging(0.639)	tolerated(0.05)	deleterious(0.569)	HMMPfam_DNA_ligase_A_N
CCDC114	93233	genome.wustl.edu	37	19	48800332	48800332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144577.3	-1	validated	p.S638	0.006	23	0%	45	37.8%	-	-	-	-	-	NULL
CYTH2	9266	genome.wustl.edu	37	19	48981589	48981589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017457.4	+1	reviewed	p.D316N	1.000	34	0%	109	35.8%	-	-	possibly_damaging(0.585)	deleterious(0.01)	deleterious(0.607)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FAM83E	54854	genome.wustl.edu	37	19	49104515	49104515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017708.3	-1	validated	p.A430T	0.173	17	0%	32	18.8%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
FUT2	2524	genome.wustl.edu	37	19	49206501	49206501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000511.5	+1	reviewed	p.P96	0.000	29	0%	48	43.8%	-	-	-	-	-	HMMPfam_Glyco_transf_11
FUT1	2523	genome.wustl.edu	37	19	49253822	49253822	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000148.3	-1	reviewed	p.S239	0.000	23	0%	58	39.7%	-	-	-	-	-	HMMPfam_Glyco_transf_11
BCAT2	587	genome.wustl.edu	37	19	49303012	49303012	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001190.3	-1	reviewed	p.S205	0.016	15	0%	44	27.3%	-	-	-	-	-	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes
PLEKHA4	57664	genome.wustl.edu	37	19	49355499	49355499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020904.2	-1	validated	p.L471I	1.000	62	0%	108	12%	-	-	possibly_damaging(0.787)	tolerated(0.12)	deleterious(0.555)	NULL
GYS1	2997	genome.wustl.edu	37	19	49488788	49488788	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002103.4	-1	reviewed	p.C251	0.998	68	0%	122	41%	-	-	-	-	-	HMMPfam_Glycogen_syn,superfamily_SSF53756
LHB	3972	genome.wustl.edu	37	19	49519512	49519512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000894.2	-1	reviewed	p.R80H	0.002	82	1.2%	92	34.8%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501
CGB7	94027	genome.wustl.edu	37	19	49557689	49557689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033142.1	-1	reviewed	p.D119E	1.000	66	0%	147	23.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_SSF57501
NTF4	4909	genome.wustl.edu	37	19	49564632	49564632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006179.4	-1	reviewed	p.G208V	0.970	10	0%	29	24.1%	-	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_NGF
CD37	951	genome.wustl.edu	37	19	49842068	49842068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001774.2	+1	reviewed	p.T187A	0.697	26	0%	45	35.6%	-	-	benign(0.001)	tolerated(0.7)	neutral(0.002)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CCDC155	147872	genome.wustl.edu	37	19	49912536	49912536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144688.4	+1	validated	p.R381Q	0.017	47	0%	69	44.9%	-	-	benign(0.002)	tolerated(0.64)	neutral(0.003)	NULL
PRR12	57479	genome.wustl.edu	37	19	50099849	50099849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020719.1	+1	validated	p.A753T	1.000	9	0.000	18	0.389	-	-	unknown(0)	-	-	NULL
PRR12	57479	genome.wustl.edu	37	19	50103169	50103169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020719.1	+1	validated	p.P1440L	0.985	10	0%	31	32.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50204753	50204753	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152359.1	+1	provisional	e5-1	1.000	14	0%	27	37%	-	-	-	-	-	-
TSKS	60385	genome.wustl.edu	37	19	50243086	50243086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021733.1	-1	reviewed	p.G576C	1.000	88	0%	115	41.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FUZ	80199	genome.wustl.edu	37	19	50311888	50311888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025129.4	-1	validated	p.L301F	1.000	44	0%	106	34%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PTOV1	53635	genome.wustl.edu	37	19	50357913	50357913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017432.3	+1	provisional	p.R105H	0.997	33	0%	68	36.8%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
PNKP	11284	genome.wustl.edu	37	19	50364949	50364949	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007254.2	-1	provisional	p.Y434	0.829	12	0%	32	40.6%	-	-	-	-	-	superfamily_SSF52540
NUP62	23636	genome.wustl.edu	37	19	50412682	50412682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012346.3	-1	reviewed	p.T128I	0.001	88	0%	173	32.9%	-	-	possibly_damaging(0.563)	tolerated(0.08)	deleterious(0.492)	NULL
ZNF473	25888	genome.wustl.edu	37	19	50549705	50549705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006656.1	+1	validated	p.A669T	0.015	88	0%	55	43.6%	-	-	benign(0.001)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
MYH14	79784	genome.wustl.edu	37	19	50758486	50758486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440075	+1	known	p.G652V	0.989	71	0%	139	43.2%	-	-	benign(0.03)	tolerated(0.11)	neutral(0.273)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH14	79784	genome.wustl.edu	37	19	50774731	50774731	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077186.1	+1	reviewed	p.T1000	0.022	82	0%	136	32.4%	-	-	-	-	-	NULL
NAPSA	9476	genome.wustl.edu	37	19	50865026	50865026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004851.1	-1	reviewed	p.R121Q	0.023	61	0%	85	38.8%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Asp,superfamily_Pept_Aspartic
MYBPC2	4606	genome.wustl.edu	37	19	50965258	50965258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004533.3	+1	validated	p.A1065T	0.089	36	0%	65	30.8%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
SHANK1	50944	genome.wustl.edu	37	19	51215203	51215203	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016148.2	-1	validated	e6+1	1.000	37	0%	83	18.1%	-	-	-	-	-	-
ACPT	93650	genome.wustl.edu	37	19	51295562	51295562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033068.2	+1	reviewed	p.A205S	0.999	15	0%	28	28.6%	-	-	possibly_damaging(0.892)	tolerated(0.14)	deleterious(0.601)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
ACPT	93650	genome.wustl.edu	37	19	51297226	51297226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033068.2	+1	reviewed	p.A287D	1.000	42	0%	111	34.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_2,superfamily_Phosphoglycerate mutase-like
KLK6	5653	genome.wustl.edu	37	19	51462460	51462460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012964.1	-1	reviewed	p.R232I	0.377	459	0%	426	39.4%	-	-	possibly_damaging(0.453)	deleterious(0.02)	deleterious(0.531)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK7	5650	genome.wustl.edu	37	19	51483128	51483128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005046.2	-1	reviewed	p.Q174H	0.001	60	0%	86	45.3%	-	-	benign(0.111)	tolerated(0.06)	neutral(0.331)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK14	43847	genome.wustl.edu	37	19	51582197	51582197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022046.4	-1	validated	p.A176T	0.010	89	0%	116	40.5%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ENSG00000171101	0	genome.wustl.edu	37	19	51671572	51671572	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000341811	+1	known	p.T191	0.000	82	0%	42	42.9%	-	-	-	-	-	superfamily_SSF48726
IGLON5	402665	genome.wustl.edu	37	19	51831948	51831948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101372.1	+1	provisional	p.A316S	0.951	30	0%	71	33.8%	-	-	unknown(0)	tolerated(0.11)	-	NULL
ETFB	2109	genome.wustl.edu	37	19	51848525	51848525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001014763.1	-1	reviewed	p.G327	0.995	80	0%	119	41.2%	-	-	-	-	-	superfamily_SSF52402
SIGLEC8	27181	genome.wustl.edu	37	19	51960916	51960916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014442.2	-1	validated	p.P178S	0.130	79	0%	129	38.8%	-	-	possibly_damaging(0.769)	tolerated(0.32)	neutral(0.309)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52002788	52002788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053003.2	-1	reviewed	p.P331T	0.086	60	0%	52	46.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SIGLEC14	100049587	genome.wustl.edu	37	19	52146793	52146793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098612.1	-1	validated	p.T382I	1.000	33	0%	34	29.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394714	52394714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023074.3	-1	validated	p.E225D	0.076	163	0%	119	36.1%	-	-	benign(0.144)	deleterious(0.02)	neutral(0.396)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF350	59348	genome.wustl.edu	37	19	52472367	52472367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021632.3	-1	validated	p.E11D	0.014	209	0%	78	26.9%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF615	284370	genome.wustl.edu	37	19	52496274	52496274	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198480.2	-1	provisional	p.C685	1.000	240	0%	116	39.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF614	80110	genome.wustl.edu	37	19	52519416	52519416	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025040.3	-1	validated	p.G479*	0.992	233	0%	139	35.3%	-	-	-	-	-	superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52568613	52568613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136499.1	-1	validated	p.R841I	0.013	212	0%	150	41.3%	-	-	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52569561	52569561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136499.1	-1	validated	p.G525D	0.000	165	0%	83	34.9%	-	-	benign(0.139)	tolerated(0.45)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618630	52618630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178523.3	-1	validated	p.R596Q	0.028	178	0%	65	44.6%	-	-	benign(0.054)	tolerated(0.92)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619803	52619803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178523.3	-1	validated	p.R205M	0.000	260	0%	91	44%	-	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660080	52660080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102657.1	-1	provisional	p.N286H	0.000	195	0%	96	31.2%	-	-	possibly_damaging(0.949)	tolerated(0.28)	neutral(0.424)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660175	52660175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102657.1	-1	provisional	p.A254V	0.077	187	0%	89	25.8%	-	-	benign(0.036)	tolerated(0.65)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660233	52660233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001102657.1	-1	provisional	p.N235H	0.000	195	0%	110	35.5%	-	-	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF534	147658	genome.wustl.edu	37	19	52941517	52941517	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143939.1	+1	validated	p.K281	0.996	137	0%	77	28.6%	-	-	-	-	-	superfamily_SSF57667
ZNF534	147658	genome.wustl.edu	37	19	52941686	52941686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143939.1	+1	validated	p.P338T	1.000	174	0%	84	32.1%	-	-	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	superfamily_SSF57667
ZNF534	147658	genome.wustl.edu	37	19	52941846	52941846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143939.1	+1	validated	p.G391E	1.000	186	0%	100	36%	-	-	unknown(0)	deleterious(0.03)	-	superfamily_SSF57667
ZNF578	147660	genome.wustl.edu	37	19	53007993	53007993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099694.1	+1	validated	p.R50M	0.845	287	0%	181	34.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF578	147660	genome.wustl.edu	37	19	53014448	53014448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099694.1	+1	validated	p.R272*	0.000	213	0.5%	98	40.8%	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF578	147660	genome.wustl.edu	37	19	53014537	53014537	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099694.1	+1	validated	p.S301	0.000	194	0%	105	36.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000248326	0	genome.wustl.edu	37	19	53015983	53015983	+	RNA	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000502966	-1	novel	NULL	0.003	77	0%	48	29.2%	-	-	-	-	-	-
ZNF808	388558	genome.wustl.edu	37	19	53058090	53058090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039886.3	+1	validated	p.H641Y	0.676	153	0%	100	34%	-	-	possibly_damaging(0.471)	deleterious(0)	deleterious(0.600)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209509	53209509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030972.3	-1	validated	p.L267F	0.009	397	0%	210	36.7%	-	-	possibly_damaging(0.671)	tolerated(0.07)	deleterious(0.557)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53269016	53269016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198457.2	-1	validated	p.P665T	0.190	319	0%	129	40.3%	-	-	benign(0.359)	deleterious(0)	deleterious(0.558)	superfamily_C2H2 and C2HC zinc fingers
ZNF320	162967	genome.wustl.edu	37	19	53384140	53384140	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207333.2	-1	validated	p.Y413	0.077	167	0.6%	86	29.1%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC388559	388559	genome.wustl.edu	37	19	53411072	53411072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_496322.5	-1	model	p.N150S	0.040	292	0%	160	37.5%	-	-	-	-	-	NULL
ZNF347	84671	genome.wustl.edu	37	19	53652058	53652058	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032584.2	-1	validated	p.I49	0.001	168	0%	124	33.1%	-	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF347	84671	genome.wustl.edu	37	19	53652590	53652590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032584.2	-1	validated	p.E16K	0.794	298	0%	134	26.1%	-	-	possibly_damaging(0.888)	tolerated(0.08)	deleterious(0.647)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
BIRC8	112401	genome.wustl.edu	37	19	53793269	53793269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033341.3	-1	validated	p.R120Q	0.072	313	0.3%	346	31.5%	-	-	benign(0.033)	tolerated(0.61)	neutral(0.005)	superfamily_Inhibitor of apoptosis (IAP) repeat
ZNF845	91664	genome.wustl.edu	37	19	53856204	53856204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138374.1	+1	validated	p.K759R	0.000	176	0%	126	37.3%	-	-	possibly_damaging(0.751)	tolerated(0.39)	neutral(0.292)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF525	170958	genome.wustl.edu	37	19	53879053	53879053	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000474037	+1	known	p.E16*	0.791	445	0%	317	23.7%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF765	91661	genome.wustl.edu	37	19	53911579	53911579	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040185.1	+1	provisional	p.Y257	0.000	237	0%	74	28.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF765	91661	genome.wustl.edu	37	19	53911764	53911764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040185.1	+1	provisional	p.R319I	0.129	186	0%	71	35.2%	-	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF761	388561	genome.wustl.edu	37	19	53958261	53958261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008401.3	+1	validated	p.S167Y	0.000	289	0%	183	36.6%	-	-	-	-	-	NULL
ZNF761	388561	genome.wustl.edu	37	19	53959105	53959105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008401.3	+1	validated	p.S448	0.000	222	0%	105	33.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF761	388561	genome.wustl.edu	37	19	53959648	53959648	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008401.3	+1	validated	p.T629	0.998	224	0.9%	133	23.3%	-	-	-	-	-	superfamily_Multiheme cytochromes
ZNF761	388561	genome.wustl.edu	37	19	53959722	53959722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008401.3	+1	validated	p.R654I	0.725	180	0%	88	30.7%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
MIR512-2	574459	genome.wustl.edu	37	19	54172487	54172487	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000384912	+1	known	NULL	0.001	32	0%	40	22.5%	-	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54313401	54313401	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144687.2	-1	reviewed	p.I504	0.191	77	0%	88	45.5%	-	-	-	-	-	NULL
PRKCG	5582	genome.wustl.edu	37	19	54385776	54385776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002739.3	+1	reviewed	p.D10N	1.000	20	0%	55	45.5%	-	-	benign(0.016)	deleterious(0.02)	neutral(0.384)	superfamily_SSF57889
PRKCG	5582	genome.wustl.edu	37	19	54403553	54403553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002739.3	+1	reviewed	p.G450C	1.000	81	0%	135	41.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NDUFA3	4696	genome.wustl.edu	37	19	54606430	54606430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004542.3	+1	validated	p.A7T	0.024	43	0%	74	32.4%	-	-	benign(0.08)	tolerated(0.16)	neutral(0.065)	NULL
TFPT	29844	genome.wustl.edu	37	19	54618638	54618638	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013342.3	-1	validated	p.E4	0.997	57	1.8%	77	36.4%	-	-	-	-	-	NULL
CNOT3	4849	genome.wustl.edu	37	19	54649465	54649465	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000440571	+1	known	p.T127M	0.967	56	0%	133	39.8%	-	-	-	-	-	HMMPfam_Not3
LENG1	79165	genome.wustl.edu	37	19	54660701	54660701	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024316.1	-1	provisional	p.Q125	1.000	44	0%	99	35.4%	-	-	-	-	-	NULL
TMC4	147798	genome.wustl.edu	37	19	54664662	54664662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145303.1	-1	validated	p.F648L	1.000	67	0%	151	28.5%	-	-	unknown(0)	deleterious(0.04)	-	NULL
MBOAT7	79143	genome.wustl.edu	37	19	54677879	54677879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024298.3	-1	reviewed	p.W426C	1.000	54	0%	95	11.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MBOAT7	79143	genome.wustl.edu	37	19	54687462	54687462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000338624	-1	known	p.R15C	0.000	44	0%	95	44.2%	-	-	-	-	-	NULL
TSEN34	79042	genome.wustl.edu	37	19	54697062	54697062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077446.2	+1	reviewed	p.A260T	1.000	48	0%	97	35.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_tRNA_int_endo,superfamily_tRNA_int_endo_C
LILRA5	353514	genome.wustl.edu	37	19	54822743	54822743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021250.2	-1	reviewed	p.R218H	0.003	64	0%	51	29.4%	-	-	benign(0.065)	tolerated(0.29)	neutral(0.034)	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA4	23547	genome.wustl.edu	37	19	54844846	54844846	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012276.3	-1	reviewed	p.I499	0.000	164	0%	210	38.6%	-	-	-	-	-	NULL
LILRA4	23547	genome.wustl.edu	37	19	54849679	54849679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012276.3	-1	reviewed	p.L115M	0.963	67	0%	86	31.4%	-	-	possibly_damaging(0.54)	deleterious(0.02)	deleterious(0.566)	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA4	23547	genome.wustl.edu	37	19	54850165	54850165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012276.3	-1	reviewed	p.S14R	0.009	110	0%	179	40.2%	-	-	unknown(0)	deleterious(0.03)	-	NULL
LAIR1	3903	genome.wustl.edu	37	19	54870168	54870168	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000444687	-1	known	p.P50	0.000	89	0%	119	10.1%	-	-	-	-	-	NULL
TTYH1	57348	genome.wustl.edu	37	19	54942081	54942081	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005367.1	+1	reviewed	p.Q344*	0.982	28	0%	54	38.9%	-	-	-	-	-	HMMPfam_Tweety
LENG8	114823	genome.wustl.edu	37	19	54963305	54963305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052925.2	+1	validated	p.R25Q	0.966	48	0%	94	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LENG8	114823	genome.wustl.edu	37	19	54965734	54965734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_052925.2	+1	validated	p.Q184H	0.990	9	0.000	44	0.523	-	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	NULL
LENG9	94059	genome.wustl.edu	37	19	54973606	54973606	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198988.1	-1	validated	p.P390	0.000	16	0%	26	38.5%	-	-	-	-	-	superfamily_Cyc_nuc_Pdiester
LENG9	94059	genome.wustl.edu	37	19	54973820	54973820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198988.1	-1	validated	p.R319H	0.038	27	0%	44	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LENG9	94059	genome.wustl.edu	37	19	54973908	54973908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198988.1	-1	validated	p.A290T	0.000	15	0%	33	45.5%	-	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
KIR3DX1	90011	genome.wustl.edu	37	19	55053773	55053773	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000221567	+1	known	p.C347	0.003	150	0%	102	25.5%	-	-	-	-	-	NULL
LILRA1	11024	genome.wustl.edu	37	19	55106566	55106566	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006863.1	+1	provisional	p.G120	0.699	172	0%	137	37.2%	-	-	-	-	-	superfamily_Immunoglobulin
LILRA1	11024	genome.wustl.edu	37	19	55107944	55107944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006863.1	+1	provisional	p.L417I	0.005	100	0%	102	28.4%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCAR	2204	genome.wustl.edu	37	19	55401211	55401211	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002000.2	+1	reviewed	p.T282	0.000	35	0%	42	19%	-	-	-	-	-	NULL
EPS8L1	54869	genome.wustl.edu	37	19	55593267	55593267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133180.2	+1	reviewed	p.E301K	1.000	7	0.000	21	0.381	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
TNNT1	7138	genome.wustl.edu	37	19	55644307	55644307	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003283.4	-1	reviewed	p.G271	0.993	36	0%	52	11.5%	-	-	-	-	-	NULL
PTPRH	5794	genome.wustl.edu	37	19	55693136	55693136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002842.3	-1	validated	p.K1112E	0.000	49	0%	104	29.8%	-	-	benign(0)	tolerated(1)	-	NULL
PTPRH	5794	genome.wustl.edu	37	19	55708026	55708026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002842.3	-1	validated	p.Q707H	0.000	27	0%	37	21.6%	-	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	NULL
PTPRH	5794	genome.wustl.edu	37	19	55713531	55713531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002842.3	-1	validated	p.T349I	0.010	191	0%	197	37.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPP6R1	22870	genome.wustl.edu	37	19	55748064	55748064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014931.3	-1	validated	p.W645*	1.000	76	0%	155	39.4%	-	-	-	-	-	NULL
PPP6R1	22870	genome.wustl.edu	37	19	55748280	55748280	+	Splice_Site	SNP	C	C	T	rs111505387	byCluster	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014931.3	-1	validated	e15+1	1.000	142	0%	214	33.2%	-	-	-	-	-	-
PPP6R1	22870	genome.wustl.edu	37	19	55756934	55756934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014931.3	-1	validated	p.G114S	0.000	26	0%	71	36.6%	-	-	benign(0.01)	tolerated(0.32)	neutral(0.025)	NULL
SUV420H2	84787	genome.wustl.edu	37	19	55857622	55857622	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032701.3	+1	validated	p.L204	0.513	71	0%	147	39.5%	-	-	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
FAM71E2	284418	genome.wustl.edu	37	19	55874079	55874079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145402.1	-1	predicted	p.V58M	0.001	11	0%	17	58.8%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
TMEM190	147744	genome.wustl.edu	37	19	55889418	55889418	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139172.1	+1	provisional	p.S127	0.179	15	0%	48	41.7%	-	-	-	-	-	NULL
RPL28	6158	genome.wustl.edu	37	19	55902965	55902965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136135.1	+1	reviewed	p.A123V	0.007	172	0%	293	34.5%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Ribosomal_L28e
ZNF628	89887	genome.wustl.edu	37	19	55992659	55992659	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033113.2	+1	validated	p.A29	0.549	17	0%	44	34.1%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100288302	100288302	genome.wustl.edu	37	19	55995365	55995365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343697.1	-1	model	p.A86T	0.952	19	0%	47	34%	-	-	-	-	-	NULL
SSC5D	284297	genome.wustl.edu	37	19	56011878	56011878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144950.1	+1	provisional	p.A775V	0.960	27	0%	61	39.3%	-	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
SSC5D	284297	genome.wustl.edu	37	19	56028940	56028940	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144950.1	+1	provisional	p.T1099	0.594	93	0%	170	30.6%	-	-	-	-	-	NULL
ZNF524	147807	genome.wustl.edu	37	19	56113609	56113609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153219.2	+1	validated	p.R44Q	0.014	9	0.000	38	0.395	-	-	probably_damaging(0.978)	tolerated(0.5)	neutral(0.430)	NULL
ZNF581	51545	genome.wustl.edu	37	19	56156014	56156014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016535.3	+1	validated	p.R26Q	0.131	37	0%	86	30.2%	-	-	benign(0.271)	tolerated(0.23)	neutral(0.071)	NULL
U2AF2	11338	genome.wustl.edu	37	19	56172454	56172454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007279.2	+1	reviewed	p.G129S	1.000	52	0%	138	38.4%	-	-	benign(0.026)	tolerated(0.28)	neutral(0.033)	NULL
EPN1	29924	genome.wustl.edu	37	19	56196917	56196917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130071.1	+1	validated	p.K239N	1.000	18	0%	53	41.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
EPN1	29924	genome.wustl.edu	37	19	56204316	56204316	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130071.1	+1	validated	e9-1	0.170	24	0%	66	39.4%	-	-	-	-	-	-
EPN1	29924	genome.wustl.edu	37	19	56204351	56204351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130071.1	+1	validated	p.F490L	1.000	23	0%	68	33.8%	-	-	possibly_damaging(0.444)	tolerated(0.2)	neutral(0.194)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244888	56244888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176820.2	-1	reviewed	p.M103I	0.003	127	0%	95	32.6%	-	-	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56249512	56249512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176820.2	-1	reviewed	p.L77I	0.004	156	0.6%	129	35.7%	-	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
NLRP4	147945	genome.wustl.edu	37	19	56388449	56388449	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_134444.4	+1	validated	p.I871	0.000	270	0%	133	30.8%	-	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
NLRP13	126204	genome.wustl.edu	37	19	56424169	56424169	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176810.2	-1	validated	p.E338	0.007	131	0%	52	36.5%	-	-	-	-	-	HMMPfam_NACHT
NLRP8	126205	genome.wustl.edu	37	19	56473471	56473471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176811.2	+1	provisional	p.D694G	0.468	165	0%	114	38.6%	-	-	probably_damaging(0.978)	tolerated(0.23)	neutral(0.462)	superfamily_RNI-like
NLRP5	126206	genome.wustl.edu	37	19	56530718	56530718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153447.4	+1	reviewed	p.Q192H	0.342	401	0%	254	18.1%	-	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	NULL
NLRP5	126206	genome.wustl.edu	37	19	56531751	56531751	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153447.4	+1	reviewed	p.Q211H	0.026	169	0%	103	17.5%	-	-	possibly_damaging(0.92)	tolerated(0.13)	deleterious(0.623)	NULL
NLRP5	126206	genome.wustl.edu	37	19	56565172	56565172	+	Silent	SNP	C	C	T	rs187087702	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153447.4	+1	reviewed	p.L1099	0.043	67	0%	68	41.2%	-	-	-	-	-	superfamily_SSF52047
ZSCAN5B	342933	genome.wustl.edu	37	19	56701770	56701770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080456.2	-1	validated	p.S305F	0.000	257	0%	244	41.4%	-	-	benign(0.059)	tolerated(0.13)	neutral(0.257)	NULL
ZNF582	147948	genome.wustl.edu	37	19	56895949	56895949	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144690.1	-1	provisional	p.G279	0.008	103	0%	56	30.4%	-	-	-	-	-	superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56953842	56953842	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022103.3	-1	validated	p.C174	0.163	183	0.5%	62	32.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF471	57573	genome.wustl.edu	37	19	57036113	57036113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020813.2	+1	validated	p.R226K	0.997	78	0%	17	58.8%	-	-	possibly_damaging(0.923)	tolerated(0.13)	deleterious(0.625)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF471	57573	genome.wustl.edu	37	19	57036956	57036956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020813.2	+1	validated	p.R507K	1.000	143	0%	47	23.4%	-	-	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP28	140612	genome.wustl.edu	37	19	57060415	57060415	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020828.1	+1	provisional	p.R204	0.000	83	0%	52	44.2%	-	-	-	-	-	NULL
ZFP28	140612	genome.wustl.edu	37	19	57065896	57065896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020828.1	+1	provisional	p.R581I	0.924	95	0%	52	17.3%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57089719	57089719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001668.3	+1	validated	p.R641I	0.921	214	0%	60	31.7%	-	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57175727	57175727	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005850.1	-1	provisional	p.C302	0.216	48	0%	50	28%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
USP29	57663	genome.wustl.edu	37	19	57641907	57641907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020903.2	+1	validated	p.L622M	0.004	59	0%	38	31.6%	-	-	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	HMMPfam_UCH,superfamily_SSF54001
DUXA	503835	genome.wustl.edu	37	19	57669725	57669725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012729.1	-1	validated	p.E137*	0.478	173	0%	171	42.1%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF460	10794	genome.wustl.edu	37	19	57796003	57796003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006635.3	+1	validated	p.V39M	0.040	270	0%	212	33%	-	-	benign(0.04)	deleterious(0)	neutral(0.447)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF460	10794	genome.wustl.edu	37	19	57803566	57803566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006635.3	+1	validated	p.G553R	0.137	97	0%	58	43.1%	-	-	benign(0.067)	deleterious(0.01)	neutral(0.410)	NULL
ZNF304	57343	genome.wustl.edu	37	19	57868363	57868363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020657.2	+1	validated	p.D376Y	0.000	190	0%	143	39.2%	-	-	probably_damaging(0.986)	tolerated(0.23)	deleterious(0.476)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57910686	57910686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152909.3	+1	validated	p.K344T	0.965	154	0%	101	34.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57910977	57910977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152909.3	+1	validated	p.R441I	0.037	171	0%	71	39.4%	-	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57932052	57932052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006959.2	+1	validated	p.R398C	0.000	141	1.4%	120	16.7%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57932123	57932123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006959.2	+1	validated	p.K421N	0.146	167	0%	104	34.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049212	58049212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153263.1	+1	provisional	p.C267W	1.000	113	0%	51	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF550	162972	genome.wustl.edu	37	19	58059348	58059348	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039654.1	-1	provisional	p.Q47H	0.002	87	0%	48	35.4%	-	-	benign(0.09)	tolerated(0.07)	neutral(0.326)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF416	55659	genome.wustl.edu	37	19	58083866	58083866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017879.1	-1	provisional	p.G469E	0.000	123	0%	91	41.8%	-	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZIK1	284307	genome.wustl.edu	37	19	58102207	58102207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010879.2	+1	provisional	p.R343I	0.085	177	0%	128	39.8%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF530	348327	genome.wustl.edu	37	19	58118486	58118486	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020880.3	+1	validated	p.S531	0.000	210	0%	138	37%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF134	7693	genome.wustl.edu	37	19	58131631	58131631	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003435.3	+1	provisional	p.T48	0.000	103	0%	78	39.7%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF134	7693	genome.wustl.edu	37	19	58132077	58132077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003435.3	+1	provisional	p.I197S	0.326	182	0%	154	35.1%	-	-	benign(0.34)	tolerated(0.05)	neutral(0.453)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF154	7710	genome.wustl.edu	37	19	58213527	58213527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001085384.1	-1	validated	p.R264W	0.392	207	0.5%	135	43.7%	-	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF671	79891	genome.wustl.edu	37	19	58232506	58232506	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024833.2	-1	validated	p.N316	0.000	168	0%	131	36.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF776	284309	genome.wustl.edu	37	19	58265220	58265220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173632.3	+1	validated	p.S241Y	1.000	92	0%	68	35.3%	-	-	benign(0.014)	deleterious(0.04)	neutral(0.349)	superfamily_C2H2 and C2HC zinc fingers
ZNF587	84914	genome.wustl.edu	37	19	58352985	58352985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343662.1	+1	model	p.R315C	0.000	167	0.6%	88	34.1%	-	-	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF587	84914	genome.wustl.edu	37	19	58353515	58353515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343662.1	+1	model	p.E435D	0.998	154	0%	97	34%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF814	730051	genome.wustl.edu	37	19	58384253	58384253	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144989.1	-1	validated	p.K835fs	0.046	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF814	730051	genome.wustl.edu	37	19	58385430	58385430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144989.1	-1	validated	p.K443I	0.214	293	0%	177	32.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58423432	58423432	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152475.2	-1	validated	p.S53	0.197	404	0%	291	32%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
C19orf18	147685	genome.wustl.edu	37	19	58485533	58485533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152474.4	-1	predicted	p.E54K	0.000	347	0%	203	38.4%	-	-	benign(0.036)	tolerated(0.07)	neutral(0.321)	NULL
ZNF606	80095	genome.wustl.edu	37	19	58490618	58490618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025027.3	-1	validated	p.I477S	0.999	136	0%	92	29.3%	-	-	possibly_damaging(0.773)	deleterious(0.01)	deleterious(0.693)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN1	284312	genome.wustl.edu	37	19	58563879	58563879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_182572.3	+1	validated	p.A163T	0.438	14	0%	42	31%	-	-	possibly_damaging(0.679)	tolerated(0.43)	neutral(0.256)	NULL
ZSCAN18	65982	genome.wustl.edu	37	19	58619925	58619925	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_027135.1	-1	validated	NULL	0.002	16	0%	17	41.2%	-	-	-	-	-	-
ZNF329	79673	genome.wustl.edu	37	19	58639825	58639825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024620.3	-1	validated	p.G349E	1.000	188	0%	136	37.5%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF544	27300	genome.wustl.edu	37	19	58773684	58773684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014480.2	+1	provisional	p.T571N	1.000	108	0%	78	33.3%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	superfamily_SSF57667
ZSCAN22	342945	genome.wustl.edu	37	19	58846413	58846413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181846.2	+1	validated	p.A82V	0.000	34	0%	51	27.5%	-	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_SCAN,HMMSmart_SCAN
A1BG	1	genome.wustl.edu	37	19	58862864	58862864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130786.3	-1	reviewed	p.A268V	0.000	15	0%	46	43.5%	-	-	benign(0.124)	tolerated(0.27)	neutral(0.044)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RPS5	6193	genome.wustl.edu	37	19	58904549	58904549	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009.3	+1	reviewed	p.G105	0.989	49	0%	94	30.9%	-	-	-	-	-	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7
ZNF324B	388569	genome.wustl.edu	37	19	58967005	58967005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207395.2	+1	validated	p.H232Y	0.000	24	0%	50	48%	-	-	benign(0.082)	tolerated(0.39)	neutral(0.022)	NULL
ZNF446	55663	genome.wustl.edu	37	19	58988774	58988774	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017908.2	+1	provisional	p.E63	1.000	28	0%	65	38.5%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
ZNF446	55663	genome.wustl.edu	37	19	58991281	58991281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000391694	+1	known	p.P130S	0.000	7	0.000	32	0.281	-	-	unknown(0)	-	-	NULL
ENSG00000249146	0	genome.wustl.edu	37	19	59023537	59023537	+	RNA	SNP	C	C	T	rs139900180	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000514271	+1	known	NULL	0.001	5	0.000	4	1.000	-	-	-	-	-	-
MZF1	7593	genome.wustl.edu	37	19	59080675	59080675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003422.2	-1	validated	p.W247*	1.000	35	0%	84	15.5%	-	-	-	-	-	NULL
NRSN2	80023	genome.wustl.edu	37	20	334144	334144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024958.2	+1	validated	p.E160D	0.997	76	0%	126	34.9%	-	-	possibly_damaging(0.893)	tolerated(0.28)	neutral(0.383)	NULL
RBCK1	10616	genome.wustl.edu	37	20	408023	408023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031229.2	+1	reviewed	p.A366T	0.997	88	0%	165	13.3%	-	-	benign(0.003)	tolerated(0.3)	neutral(0.029)	NULL
TBC1D20	128637	genome.wustl.edu	37	20	419324	419324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144628.2	-1	validated	p.M373T	1.000	54	0%	56	35.7%	-	-	possibly_damaging(0.923)	tolerated(0.08)	deleterious(0.672)	NULL
SLC52A3	113278	genome.wustl.edu	37	20	744468	744468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033409.3	-1	validated	p.E249D	0.000	89	0%	111	37.8%	-	-	benign(0.057)	tolerated(0.4)	neutral(0.019)	NULL
FAM110A	83541	genome.wustl.edu	37	20	826276	826276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042353.1	+1	validated	p.V277M	0.998	26	0%	60	43.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANGPT4	51378	genome.wustl.edu	37	20	896647	896647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015985.2	-1	reviewed	p.E71*	1.000	103	0%	88	33%	-	-	-	-	-	NULL
PSMF1	9491	genome.wustl.edu	37	20	1106243	1106243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006814.3	+1	reviewed	p.L78F	1.000	122	0%	86	41.9%	-	-	benign(0.06)	tolerated(0.27)	neutral(0.038)	NULL
PSMF1	9491	genome.wustl.edu	37	20	1115795	1115795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006814.3	+1	reviewed	p.R133C	0.961	82	0%	80	37.5%	-	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SIRPB1	10326	genome.wustl.edu	37	20	1551638	1551638	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006065.3	-1	reviewed	p.S299	0.000	338	0%	138	44.2%	-	-	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,HMMSmart_SM00409,superfamily_Immunoglobulin
SIRPG	55423	genome.wustl.edu	37	20	1616217	1616217	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018556.3	-1	reviewed	p.Q259	0.015	160	0%	90	28.9%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SIRPA	140885	genome.wustl.edu	37	20	1895967	1895967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040022.1	+1	reviewed	p.N101S	0.005	536	0%	435	33.1%	-	-	benign(0.018)	tolerated(0.05)	neutral(0.346)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIRPA	140885	genome.wustl.edu	37	20	1918063	1918063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001040022.1	+1	reviewed	p.S455I	1.000	60	0%	82	37.8%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
TGM3	7053	genome.wustl.edu	37	20	2308984	2308984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003245.3	+1	reviewed	p.V436I	0.997	48	0%	41	31.7%	-	-	benign(0)	tolerated(1)	-	superfamily_Cysteine proteinases
TGM3	7053	genome.wustl.edu	37	20	2321219	2321219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003245.3	+1	reviewed	p.A692T	0.172	37	0%	35	31.4%	-	-	benign(0.047)	deleterious(0.01)	neutral(0.409)	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains
SNRPB	6628	genome.wustl.edu	37	20	2442480	2442480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000303103	-1	known	p.C264R	0.987	46	0%	48	43.8%	-	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
TMC2	117532	genome.wustl.edu	37	20	2591238	2591238	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080751.2	+1	validated	p.H529	1.000	136	0%	88	33%	-	-	-	-	-	NULL
TMC2	117532	genome.wustl.edu	37	20	2596793	2596793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080751.2	+1	validated	p.A628V	1.000	231	0%	122	36.1%	-	-	benign(0.269)	deleterious(0.01)	neutral(0.434)	HMMPfam_TMC
EBF4	57593	genome.wustl.edu	37	20	2686364	2686364	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110514.1	+1	provisional	p.F89	0.958	71	0%	92	35.9%	-	-	-	-	-	NULL
CPXM1	56265	genome.wustl.edu	37	20	2779154	2779154	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019609.4	-1	reviewed	p.R124*	1.000	22	0%	58	34.5%	-	-	-	-	-	HMMSmart_SM00231,superfamily_Galactose-binding domain-like
PTPRA	5786	genome.wustl.edu	37	20	2998477	2998477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002836.3	+1	reviewed	p.T320M	1.000	193	0%	272	33.8%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LOC100289538	100289538	genome.wustl.edu	37	20	3027411	3027411	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002344179.1	-1	model	p.G147	0.000	6	0.000	17	0.235	-	-	-	-	-	NULL
UBOX5	22888	genome.wustl.edu	37	20	3103149	3103149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014948.2	-1	validated	p.F46L	1.000	138	0.7%	164	18.3%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3211616	3211616	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032034.3	-1	reviewed	p.F393	0.986	230	0%	457	32.2%	-	-	-	-	-	HMMPfam_HCO3_cotransp
SLC4A11	83959	genome.wustl.edu	37	20	3214854	3214854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032034.3	-1	reviewed	p.D149V	1.000	55	0%	131	29.8%	-	-	possibly_damaging(0.855)	deleterious(0.02)	deleterious(0.713)	superfamily_Phoshotransferase/anion transport protein
SLC4A11	83959	genome.wustl.edu	37	20	3215451	3215451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032034.3	-1	reviewed	p.V76M	0.997	58	3.4%	110	30.9%	-	-	probably_damaging(0.961)	tolerated(0.1)	deleterious(0.691)	NULL
C20orf194	25943	genome.wustl.edu	37	20	3363145	3363145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001009984.1	-1	validated	p.R31Q	1.000	73	0%	40	37.5%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
ATRN	8455	genome.wustl.edu	37	20	3553421	3553421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139321.2	+1	reviewed	p.D639N	1.000	128	0%	59	11.9%	-	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
SIGLEC1	6614	genome.wustl.edu	37	20	3683945	3683945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_023068.3	-1	reviewed	p.R376Q	0.010	81	0%	125	36%	-	-	benign(0.001)	tolerated(0.95)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CDC25B	994	genome.wustl.edu	37	20	3781414	3781414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021873.2	+1	reviewed	p.V162M	0.998	19	0%	48	35.4%	-	-	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_M-inducer_phosp
PANK2	80025	genome.wustl.edu	37	20	3891456	3891456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153638.2	+1	reviewed	p.Y405C	1.000	175	0%	82	42.7%	-	-	possibly_damaging(0.727)	tolerated(0.08)	deleterious(0.565)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
PANK2	80025	genome.wustl.edu	37	20	3893185	3893185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153638.2	+1	reviewed	p.S439Y	0.993	124	0%	117	27.4%	-	-	possibly_damaging(0.625)	deleterious(0.02)	deleterious(0.601)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
SMOX	54498	genome.wustl.edu	37	20	4162814	4162814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175839.1	+1	reviewed	p.G230C	1.000	19	0%	33	36.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
ADRA1D	146	genome.wustl.edu	37	20	4229311	4229311	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000678.3	-1	reviewed	p.G98	0.859	18	0%	27	40.7%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
RASSF2	9770	genome.wustl.edu	37	20	4771115	4771115	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014737.2	-1	reviewed	p.G173	0.998	85	0%	60	28.3%	-	-	-	-	-	NULL
SLC23A2	9962	genome.wustl.edu	37	20	4880328	4880328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005116.5	-1	reviewed	p.A119T	1.000	73	0%	50	28%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Xan_ur_permease
PROKR2	128674	genome.wustl.edu	37	20	5294612	5294612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144773.2	-1	reviewed	p.R135H	1.000	92	0%	128	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GPCPD1	56261	genome.wustl.edu	37	20	5528403	5528403	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000418646	-1	known	p.V233M	0.942	137	0%	66	45.5%	-	-	-	-	-	NULL
GPCPD1	56261	genome.wustl.edu	37	20	5550811	5550811	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019593.3	-1	validated	p.C377*	1.000	76	0%	36	27.8%	-	-	-	-	-	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
CHGB	1114	genome.wustl.edu	37	20	5903969	5903969	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001819.2	+1	reviewed	p.E393	0.012	108	0%	65	41.5%	-	-	-	-	-	HMMPfam_Granin
MCM8	84515	genome.wustl.edu	37	20	5974267	5974267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032485.4	+1	reviewed	p.V786I	0.986	84	0%	62	37.1%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
LRRN4	164312	genome.wustl.edu	37	20	6022058	6022058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152611.3	-1	validated	p.Q611H	1.000	12	0%	27	22.2%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FERMT1	55612	genome.wustl.edu	37	20	6090996	6090996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017671.4	-1	reviewed	p.A232V	1.000	240	0.4%	131	35.1%	-	-	benign(0.035)	tolerated(0.09)	neutral(0.298)	HMMSmart_SM00295
PAK7	57144	genome.wustl.edu	37	20	9546657	9546657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020341.3	-1	reviewed	p.I455	0.922	250	0%	168	26.8%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PAK7	57144	genome.wustl.edu	37	20	9546900	9546900	+	Silent	SNP	C	C	T	rs185081269	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020341.3	-1	reviewed	p.P374	0.130	161	0%	105	41.9%	-	-	-	-	-	NULL
MKKS	8195	genome.wustl.edu	37	20	10389314	10389314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018848.2	-1	reviewed	p.L375I	1.000	105	0%	42	42.9%	-	-	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
BTBD3	22903	genome.wustl.edu	37	20	11900441	11900441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014962.2	+1	validated	p.R165C	1.000	160	0%	45	44.4%	-	-	benign(0.251)	deleterious(0.03)	neutral(0.390)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ESF1	51575	genome.wustl.edu	37	20	13698077	13698077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016649.3	-1	provisional	p.L734M	1.000	396	0%	181	40.9%	-	-	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	NULL
C20orf7	79133	genome.wustl.edu	37	20	13797125	13797125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024120.4	+1	reviewed	p.N265K	1.000	192	0%	70	38.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SEL1L2	80343	genome.wustl.edu	37	20	13912271	13912271	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025229.1	-1	validated	p.I87	0.000	194	0%	115	37.4%	-	-	-	-	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16337097	16337097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024704.3	-1	validated	p.R1167W	1.000	99	0%	37	43.2%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
OTOR	56914	genome.wustl.edu	37	20	16730569	16730569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020157.2	+1	reviewed	p.E93*	0.301	129	0%	32	28.1%	-	-	-	-	-	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
BFSP1	631	genome.wustl.edu	37	20	17475474	17475474	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001195.3	-1	reviewed	p.E415*	0.001	163	0%	153	41.8%	-	-	-	-	-	NULL
SNX5	27131	genome.wustl.edu	37	20	17933321	17933321	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014426.2	-1	reviewed	p.S141	0.939	89	0%	74	43.2%	-	-	-	-	-	HMMPfam_PX,superfamily_PX domain
DZANK1	55184	genome.wustl.edu	37	20	18434408	18434408	+	Missense_Mutation	SNP	G	G	A	rs192931661	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099407.1	-1	validated	p.R148C	0.025	368	0%	139	30.2%	-	-	possibly_damaging(0.861)	tolerated(0.18)	neutral(0.389)	NULL
SEC23B	10483	genome.wustl.edu	37	20	18496339	18496339	+	Missense_Mutation	SNP	G	G	A	rs121918221		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006363.4	+1	reviewed	p.E109K	1.000	207	0%	154	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Znf_Sec23_Sec24,superfamily_SSF81995
SLC24A3	57419	genome.wustl.edu	37	20	19566150	19566150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020689.3	+1	validated	p.L192M	1.000	484	0%	279	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
SLC24A3	57419	genome.wustl.edu	37	20	19677550	19677550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020689.3	+1	validated	p.R534I	1.000	69	0%	37	45.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Na_Ca_ex
C20orf26	26074	genome.wustl.edu	37	20	20177324	20177324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015585.3	+1	validated	p.F567L	1.000	188	0%	140	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Acyl-CoA N-acyltransferases (Nat)
C20orf26	26074	genome.wustl.edu	37	20	20258056	20258056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015585.3	+1	validated	p.S917I	0.000	79	0%	102	13.7%	-	-	possibly_damaging(0.729)	tolerated(0.09)	deleterious(0.562)	superfamily_FAD/NAD(P)-binding domain
C20orf26	26074	genome.wustl.edu	37	20	20278904	20278904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015585.3	+1	validated	p.T1099I	0.199	87	0%	87	35.6%	-	-	possibly_damaging(0.669)	deleterious(0.05)	deleterious(0.583)	NULL
XRN2	22803	genome.wustl.edu	37	20	21306940	21306940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012255.3	+1	reviewed	p.K33N	1.000	166	0.6%	55	47.3%	-	-	benign(0.011)	tolerated(0.35)	neutral(0.021)	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21329005	21329005	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012255.3	+1	reviewed	p.G600	0.943	92	0%	38	26.3%	-	-	-	-	-	NULL
XRN2	22803	genome.wustl.edu	37	20	21346285	21346285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012255.3	+1	reviewed	p.G800D	1.000	147	0%	86	39.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23016480	23016480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001052.2	+1	validated	p.R120	0.597	35	0%	100	40%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NAPB	63908	genome.wustl.edu	37	20	23358077	23358077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022080.2	-1	validated	p.T278I	1.000	118	0%	63	42.9%	-	-	benign(0.248)	deleterious(0)	deleterious(0.470)	superfamily_TPR-like
CST9	128822	genome.wustl.edu	37	20	23586481	23586481	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008693.2	-1	reviewed	p.R7	0.000	49	0%	57	47.4%	-	-	-	-	-	NULL
CST4	1472	genome.wustl.edu	37	20	23669411	23669411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001899.2	-1	reviewed	p.R66C	0.002	94	0%	106	43.4%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
C20orf3	57136	genome.wustl.edu	37	20	24954345	24954345	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000451442	-1	known	p.A104V	1.000	85	0%	72	48.6%	-	-	-	-	-	superfamily_Calcium-dependent phosphotriesterase
ENTPD6	955	genome.wustl.edu	37	20	25187220	25187220	+	Silent	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001247.2	+1	reviewed	p.I16	0.000	137	0%	212	28.8%	-	-	-	-	-	NULL
ENTPD6	955	genome.wustl.edu	37	20	25204792	25204792	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000447877	+1	known	p.T273M	0.189	58	0%	101	40.6%	-	-	-	-	-	HMMPfam_GDA1_CD39
PYGB	5834	genome.wustl.edu	37	20	25277087	25277087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002862.3	+1	reviewed	p.Y821D	1.000	60	0%	94	20.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphorylase,superfamily_SSF53756
ABHD12	26090	genome.wustl.edu	37	20	25290179	25290179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015600.3	-1	validated	p.R218W	0.995	47	0%	79	35.4%	-	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
NINL	22981	genome.wustl.edu	37	20	25481602	25481602	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025176.4	-1	validated	p.L302	0.131	94	0%	144	36.8%	-	-	-	-	-	superfamily_SSF47473
REM1	28954	genome.wustl.edu	37	20	30070204	30070204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014012.4	+1	reviewed	p.R180W	1.000	35	2.9%	64	40.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HM13	81502	genome.wustl.edu	37	20	30154037	30154037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178581.1	+1	reviewed	p.A325T	1.000	146	0%	244	37.7%	-	-	possibly_damaging(0.705)	tolerated(0.05)	deleterious(0.599)	HMMSmart_PSN,HMMPfam_Peptidase_A22B
MYLK2	85366	genome.wustl.edu	37	20	30409446	30409446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033118.3	+1	reviewed	p.R226S	0.052	45	0%	97	36.1%	-	-	benign(0.051)	tolerated(0.23)	neutral(0.045)	NULL
FOXS1	2307	genome.wustl.edu	37	20	30432900	30432900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004118.3	-1	reviewed	p.G149D	0.039	21	0%	47	27.7%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
TTLL9	164395	genome.wustl.edu	37	20	30530767	30530767	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000375922	+1	known	p.E322*	0.745	169	0%	197	33%	-	-	-	-	-	NULL
C20orf160	140706	genome.wustl.edu	37	20	30602753	30602753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080625.3	+1	validated	p.R26H	0.985	42	0%	70	34.3%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
TM9SF4	9777	genome.wustl.edu	37	20	30723959	30723959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014742.3	+1	validated	p.Y71S	1.000	101	0%	71	32.4%	-	-	possibly_damaging(0.935)	tolerated(0.58)	neutral(0.386)	HMMPfam_EMP70
TM9SF4	9777	genome.wustl.edu	37	20	30729347	30729347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014742.3	+1	validated	p.L93I	1.000	58	0%	69	43.5%	-	-	benign(0.025)	tolerated(0.08)	neutral(0.301)	HMMPfam_EMP70
PLAGL2	5326	genome.wustl.edu	37	20	30784582	30784582	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002657.3	-1	reviewed	p.A388	0.998	37	0%	78	33.3%	-	-	-	-	-	NULL
ASXL1	171023	genome.wustl.edu	37	20	31022494	31022494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015338.5	+1	reviewed	p.G660D	1.000	13	0%	15	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BPIFB2	80341	genome.wustl.edu	37	20	31606493	31606493	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025227.1	+1	reviewed	p.T240	0.011	40	0%	95	35.8%	-	-	-	-	-	superfamily_Bactericidal permeability-increasing protein BPI
NCOA6	23054	genome.wustl.edu	37	20	33328172	33328172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014071.2	-1	reviewed	p.S1963N	1.000	68	0%	32	40.6%	-	-	benign(0.027)	tolerated(0.29)	neutral(0.031)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33356354	33356354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014071.2	-1	reviewed	p.R143*	1.000	141	0%	90	31.1%	-	-	-	-	-	NULL
MYH7B	57644	genome.wustl.edu	37	20	33581220	33581220	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020884.3	+1	reviewed	p.A839	0.000	38	0%	56	33.9%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TRPC4AP	26133	genome.wustl.edu	37	20	33594318	33594318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015638.2	-1	validated	p.F583V	1.000	165	0%	215	36.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PROCR	10544	genome.wustl.edu	37	20	33762595	33762595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006404.3	+1	reviewed	p.L54P	0.000	32	0%	43	30.2%	-	-	benign(0.016)	tolerated(0.06)	neutral(0.323)	superfamily_MHC antigen-recognition domain
GDF5	8200	genome.wustl.edu	37	20	34021968	34021968	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000557.2	-1	reviewed	p.D415	0.977	68	0%	96	10.4%	-	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
CEP250	11190	genome.wustl.edu	37	20	34060643	34060643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007186.3	+1	reviewed	p.R399H	0.998	198	0%	125	15.2%	-	-	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
CEP250	11190	genome.wustl.edu	37	20	34067470	34067470	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007186.3	+1	reviewed	e16-1	1.000	86	0%	71	32.4%	-	-	-	-	-	-
RBM12	10137	genome.wustl.edu	37	20	34241450	34241450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006047.4	-1	reviewed	p.R599C	1.000	133	0%	146	20.5%	-	-	benign(0.069)	tolerated(0.13)	neutral(0.257)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NFS1	9054	genome.wustl.edu	37	20	34260752	34260752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021100.3	-1	reviewed	p.R412H	1.000	92	0%	112	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
NFS1	9054	genome.wustl.edu	37	20	34268659	34268659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021100.3	-1	reviewed	p.G264R	1.000	156	0%	166	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases,PatternScan_AA_TRANSFER_CLASS_5
NFS1	9054	genome.wustl.edu	37	20	34285711	34285711	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021100.3	-1	reviewed	p.V73	0.550	85	0%	146	29.5%	-	-	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
PHF20	51230	genome.wustl.edu	37	20	34528871	34528871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016436.4	+1	validated	p.S933N	0.633	44	0%	57	36.8%	-	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
SCAND1	51282	genome.wustl.edu	37	20	34542064	34542064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016558.2	-1	reviewed	p.P48H	0.000	5	0.000	21	0.381	-	-	possibly_damaging(0.734)	deleterious(0.01)	deleterious(0.674)	NULL
TGIF2	60436	genome.wustl.edu	37	20	35207299	35207299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021809.5	+1	reviewed	p.R41H	1.000	50	0%	78	34.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
TGIF2	60436	genome.wustl.edu	37	20	35219329	35219329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021809.5	+1	reviewed	p.I70T	1.000	33	0%	38	55.3%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SOGA1	140710	genome.wustl.edu	37	20	35431262	35431262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199181.2	-1	validated	p.S874R	0.970	21	0%	34	41.2%	-	-	possibly_damaging(0.513)	deleterious(0.02)	deleterious(0.555)	NULL
RBL1	5933	genome.wustl.edu	37	20	35695156	35695156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002895.2	-1	reviewed	p.P273T	1.000	202	0%	231	30.7%	-	-	possibly_damaging(0.838)	tolerated(0.09)	deleterious(0.617)	NULL
SRC	6714	genome.wustl.edu	37	20	36022370	36022370	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005417.3	+1	reviewed	p.A141	0.984	44	0%	62	16.1%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CTNNBL1	56259	genome.wustl.edu	37	20	36361363	36361363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030877.3	+1	reviewed	p.R38H	0.729	149	0%	87	41.4%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
TTI1	9675	genome.wustl.edu	37	20	36640077	36640077	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014657.1	-1	predicted	p.H714	0.870	41	0%	35	40%	-	-	-	-	-	superfamily_ARM-type_fold
TGM2	7052	genome.wustl.edu	37	20	36767965	36767965	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004613.2	-1	reviewed	p.V397	1.000	74	0%	77	29.9%	-	-	-	-	-	superfamily_Cysteine proteinases
BPI	671	genome.wustl.edu	37	20	36940320	36940320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001725.2	+1	reviewed	p.R198Q	0.000	76	0%	54	35.2%	-	-	probably_damaging(0.973)	tolerated(0.35)	neutral(0.435)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
RALGAPB	57148	genome.wustl.edu	37	20	37179787	37179787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020336.2	+1	validated	p.F1028C	1.000	222	0%	51	33.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARHGAP40	343578	genome.wustl.edu	37	20	37255842	37255842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000373345	+1	known	p.G128V	0.863	56	0%	50	42%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
TOP1	7150	genome.wustl.edu	37	20	39690101	39690101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003286.2	+1	reviewed	p.K42N	1.000	208	0%	62	29%	-	-	unknown(0)	deleterious(0.01)	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39750388	39750388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003286.2	+1	reviewed	p.A668D	1.000	200	0%	104	12.5%	-	-	possibly_damaging(0.879)	tolerated(0.14)	deleterious(0.592)	superfamily_Eukaryotic DNA topoisomerase I dispensable insert domain,superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
PLCG1	5335	genome.wustl.edu	37	20	39794395	39794395	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002660.2	+1	reviewed	p.T576	0.134	32	0%	55	12.7%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
ZHX3	23051	genome.wustl.edu	37	20	39832976	39832976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015035.3	-1	reviewed	p.A194V	1.000	107	0%	57	29.8%	-	-	benign(0.025)	tolerated(0.45)	neutral(0.013)	NULL
CHD6	84181	genome.wustl.edu	37	20	40033382	40033382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032221.3	-1	reviewed	p.S2667P	1.000	105	0%	104	36.5%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
CHD6	84181	genome.wustl.edu	37	20	40045242	40045242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032221.3	-1	reviewed	p.A2158T	0.043	65	0%	45	15.6%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
CHD6	84181	genome.wustl.edu	37	20	40126812	40126812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032221.3	-1	reviewed	p.N324H	1.000	49	0%	18	27.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
PTPRT	11122	genome.wustl.edu	37	20	40735480	40735480	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000454126	-1	known	p.S750F	1.000	97	0%	68	23.5%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRT	11122	genome.wustl.edu	37	20	40747080	40747080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_133170.3	-1	reviewed	p.S1001N	1.000	61	0%	35	40%	-	-	possibly_damaging(0.799)	tolerated(0.1)	deleterious(0.587)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
L3MBTL1	26013	genome.wustl.edu	37	20	42157296	42157296	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015478.5	+1	reviewed	e5-1	0.799	71	0%	38	15.8%	-	-	-	-	-	-
L3MBTL1	26013	genome.wustl.edu	37	20	42168925	42168925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015478.5	+1	reviewed	p.V680F	1.000	36	0%	48	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFT52	51098	genome.wustl.edu	37	20	42271137	42271137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016004.2	+1	validated	p.E380V	1.000	152	0%	142	41.5%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
GDAP1L1	78997	genome.wustl.edu	37	20	42885840	42885840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000445952	+1	known	p.R23C	0.998	18	0%	28	46.4%	-	-	-	-	-	HMMPfam_GST_N,superfamily_Thioredoxin-like
HNF4A	3172	genome.wustl.edu	37	20	43034771	43034771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000372920	+1	known	p.R94W	0.997	22	0%	43	34.9%	-	-	unknown(0)	-	-	NULL
HNF4A	3172	genome.wustl.edu	37	20	43036075	43036075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000457.3	+1	reviewed	p.C115W	1.000	47	0%	100	33%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
WISP2	8839	genome.wustl.edu	37	20	43353476	43353476	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003881.2	+1	reviewed	p.D125	0.983	10	0%	13	53.8%	-	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
STK4	6789	genome.wustl.edu	37	20	43629144	43629144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006282.2	+1	reviewed	p.D315Y	1.000	102	0%	44	34.1%	-	-	benign(0.115)	deleterious(0)	neutral(0.454)	NULL
SEMG1	6406	genome.wustl.edu	37	20	43837158	43837158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003007.3	+1	reviewed	p.S407Y	0.000	89	0%	46	26.1%	-	-	benign(0.115)	tolerated(0.43)	neutral(0.022)	HMMPfam_Semenogelin
WFDC6	140870	genome.wustl.edu	37	20	44168013	44168013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080827.1	-1	reviewed	p.P12S	0.003	102	0%	53	34%	-	-	possibly_damaging(0.771)	tolerated(0.13)	deleterious(0.539)	NULL
WFDC8	90199	genome.wustl.edu	37	20	44207873	44207873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_130896.2	-1	reviewed	p.R5Q	0.000	338	0.3%	177	36.2%	-	-	possibly_damaging(0.482)	-	-	NULL
ACOT8	10005	genome.wustl.edu	37	20	44477248	44477248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005469.2	-1	reviewed	p.R110H	1.000	74	0%	92	15.2%	-	-	unknown(0)	-	-	HMMPfam_Acyl_CoA_thio,superfamily_SSF54637
ZNF335	63925	genome.wustl.edu	37	20	44587981	44587981	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022095.3	-1	reviewed	p.S704	1.000	35	0%	61	13.1%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF335	63925	genome.wustl.edu	37	20	44588938	44588938	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022095.3	-1	reviewed	p.H643	0.102	62	0%	117	40.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MMP9	4318	genome.wustl.edu	37	20	44640922	44640922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004994.2	+1	reviewed	p.D382N	1.000	25	0%	88	33%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZNF334	55713	genome.wustl.edu	37	20	45129992	45129992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018102.3	-1	validated	p.E662D	1.000	272	0%	163	26.4%	-	-	benign(0.137)	deleterious(0.05)	neutral(0.357)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45131124	45131124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018102.3	-1	validated	p.R285I	0.994	120	0%	77	26%	-	-	benign(0.018)	deleterious(0)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZMYND8	23613	genome.wustl.edu	37	20	45875084	45875084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_183047.1	-1	reviewed	p.A651V	0.047	220	0%	232	32.3%	-	-	benign(0.046)	tolerated(0.09)	neutral(0.299)	NULL
PREX1	57580	genome.wustl.edu	37	20	47249144	47249144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020820.3	-1	reviewed	p.R1434Q	1.000	49	0%	70	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47626856	47626856	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006420.2	+1	reviewed	p.N1224	1.000	82	0%	40	15%	-	-	-	-	-	HMMPfam_DUF1981,superfamily_ARM-type_fold
ZNFX1	57169	genome.wustl.edu	37	20	47864123	47864123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021035.2	-1	validated	p.M1813R	1.000	180	0%	147	32.7%	-	-	possibly_damaging(0.515)	deleterious(0.01)	deleterious(0.579)	NULL
KCNB1	3745	genome.wustl.edu	37	20	47991332	47991332	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004975.2	-1	reviewed	p.W255*	1.000	87	0%	100	41%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
KCNB1	3745	genome.wustl.edu	37	20	47991438	47991438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004975.2	-1	reviewed	p.F220S	0.995	127	0%	121	28.1%	-	-	possibly_damaging(0.659)	tolerated(0.09)	deleterious(0.529)	superfamily_SSF81324
PTPN1	5770	genome.wustl.edu	37	20	49195120	49195120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002827.2	+1	reviewed	p.I219T	1.000	61	1.6%	56	25%	-	-	possibly_damaging(0.803)	deleterious(0)	deleterious(0.747)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
FAM65C	140876	genome.wustl.edu	37	20	49224991	49224991	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080829.2	-1	predicted	p.P293	0.760	32	0%	61	34.4%	-	-	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49510221	49510221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015339.2	-1	reviewed	p.G344S	0.959	166	0%	96	42.7%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
NFATC2	4773	genome.wustl.edu	37	20	50048730	50048730	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173091.2	-1	reviewed	p.Q866*	1.000	142	0%	239	38.1%	-	-	-	-	-	NULL
NFATC2	4773	genome.wustl.edu	37	20	50139988	50139988	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173091.2	-1	reviewed	p.P264	0.998	19	0%	35	34.3%	-	-	-	-	-	NULL
ATP9A	10079	genome.wustl.edu	37	20	50292678	50292678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006045.1	-1	validated	p.R290Q	0.710	157	0%	124	41.9%	-	-	benign(0.239)	tolerated(0.08)	neutral(0.324)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50312684	50312684	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006045.1	-1	validated	e6-1	1.000	214	0%	198	31.8%	-	-	-	-	-	-
SALL4	57167	genome.wustl.edu	37	20	50405678	50405678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020436.3	-1	reviewed	p.R822W	1.000	30	0%	51	37.3%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SALL4	57167	genome.wustl.edu	37	20	50407410	50407410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020436.3	-1	reviewed	p.G538W	0.988	59	0%	95	30.5%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ZFP64	55734	genome.wustl.edu	37	20	50769030	50769030	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018197.2	-1	validated	p.P567	0.000	17	0%	32	56.2%	-	-	-	-	-	NULL
CYP24A1	1591	genome.wustl.edu	37	20	52774032	52774032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000782.4	-1	reviewed	p.E443D	0.995	83	0%	42	33.3%	-	-	benign(0.002)	tolerated(0.76)	neutral(0.001)	HMMPfam_p450,superfamily_Cytochrome_P450
DOK5	55816	genome.wustl.edu	37	20	53205225	53205225	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018431.3	+1	reviewed	e4-1	1.000	164	0%	40	35%	-	-	-	-	-	-
CBLN4	140689	genome.wustl.edu	37	20	54575848	54575848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080617.4	-1	reviewed	p.R116I	0.999	194	0%	226	34.1%	-	-	possibly_damaging(0.945)	tolerated(0.57)	neutral(0.396)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
C20orf43	51507	genome.wustl.edu	37	20	55048440	55048440	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016407.3	+1	validated	p.C51	1.000	187	0%	164	26.8%	-	-	-	-	-	HMMPfam_DUF602
BMP7	655	genome.wustl.edu	37	20	55746095	55746095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001719.2	-1	reviewed	p.V406I	1.000	59	1.7%	94	36.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
BMP7	655	genome.wustl.edu	37	20	55758861	55758861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001719.2	-1	reviewed	p.R292Q	1.000	33	0%	81	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56099210	56099210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080618.2	-1	reviewed	p.E18*	0.936	157	0%	242	35.5%	-	-	-	-	-	NULL
NPEPL1	79716	genome.wustl.edu	37	20	57288496	57288496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024663.3	+1	validated	p.T341M	1.000	31	0%	63	39.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M17,PatternScan_CYTOSOL_AP,superfamily_Zn-dependent exopeptidases
GNAS	2778	genome.wustl.edu	37	20	57429319	57429319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077490.1	+1	reviewed	p.T271M	0.001	30	0%	52	36.5%	-	-	unknown(0)	tolerated(0.3)	-	NULL
TUBB1	81027	genome.wustl.edu	37	20	57598608	57598608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030773.2	+1	validated	p.R77Q	1.000	156	0%	239	35.6%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
EDN3	1908	genome.wustl.edu	37	20	57876720	57876720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000114.2	+1	reviewed	p.K103M	1.000	61	0%	96	34.4%	-	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Endothelin,HMMSmart_SM00272,PatternScan_ENDOTHELIN
SYCP2	10388	genome.wustl.edu	37	20	58455504	58455504	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014258.2	-1	reviewed	p.K932T	1.000	207	0%	60	45%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467060	58467060	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014258.2	-1	reviewed	p.S783	0.031	164	0%	32	28.1%	-	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58475262	58475262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014258.2	-1	reviewed	p.K445N	0.025	280	0%	73	39.7%	-	-	benign(0.273)	tolerated(0.06)	neutral(0.352)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58490524	58490524	+	Missense_Mutation	SNP	G	G	T	rs3736763	byCluster	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014258.2	-1	reviewed	p.L199I	0.992	192	0%	63	33.3%	-	-	possibly_damaging(0.585)	tolerated(0.13)	neutral(0.454)	NULL
PPP1R3D	5509	genome.wustl.edu	37	20	58514325	58514325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006242.3	-1	reviewed	p.A221V	0.997	5	0.000	16	0.562	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_CBM_21
FAM217B	63939	genome.wustl.edu	37	20	58519400	58519400	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022106.1	+1	predicted	p.G134	0.000	81	0%	75	38.7%	-	-	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58564030	58564030	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177980.2	+1	reviewed	p.F365	0.000	60	0%	73	34.2%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH26	60437	genome.wustl.edu	37	20	58571804	58571804	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370991	+1	known	p.A261V	0.000	161	0%	82	37.8%	-	-	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58577893	58577893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_177980.2	+1	reviewed	p.R731K	0.128	133	0%	65	12.3%	-	-	benign(0.019)	-	-	NULL
LSM14B	149986	genome.wustl.edu	37	20	60705625	60705625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144703.2	+1	validated	p.R238H	0.994	136	0%	177	32.2%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
OSBPL2	9885	genome.wustl.edu	37	20	60847239	60847239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144498.1	+1	reviewed	p.R106Q	1.000	62	0%	87	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
LAMA5	3911	genome.wustl.edu	37	20	60886364	60886364	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005560.3	-1	reviewed	e73-1	0.816	24	0%	63	34.9%	-	-	-	-	-	-
CABLES2	81928	genome.wustl.edu	37	20	60966046	60966046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031215.2	-1	validated	p.R473H	1.000	76	0%	209	11.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CABLES2	81928	genome.wustl.edu	37	20	60970048	60970048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031215.2	-1	validated	p.R184W	1.000	11	0%	21	23.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MIR1-1	406904	genome.wustl.edu	37	20	61151558	61151558	+	RNA	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000362147	+1	known	NULL	1.000	66	0%	110	39.1%	-	-	-	-	-	-
SLCO4A1	28231	genome.wustl.edu	37	20	61292443	61292443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016354.3	+1	validated	p.A346V	0.120	34	0%	76	40.8%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_OATP,superfamily_MFS general substrate transporter
COL9A3	1299	genome.wustl.edu	37	20	61452861	61452861	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001853.3	+1	reviewed	p.G116	1.000	22	0%	60	36.7%	-	-	-	-	-	NULL
COL9A3	1299	genome.wustl.edu	37	20	61458173	61458173	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001853.3	+1	reviewed	e15+1	0.970	22	0%	56	33.9%	-	-	-	-	-	-
DIDO1	11083	genome.wustl.edu	37	20	61513092	61513092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033081.1	-1	reviewed	p.R1406W	0.000	40	0%	97	30.9%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61513328	61513328	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033081.1	-1	reviewed	p.S1327*	0.016	65	0%	170	32.9%	-	-	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61542781	61542781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033081.1	-1	reviewed	p.R62W	1.000	35	0%	77	22.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C20orf11	54994	genome.wustl.edu	37	20	61574359	61574359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017896.2	+1	validated	p.E47K	1.000	152	0%	229	37.1%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_LisH,HMMPfam_LisH
C20orf11	54994	genome.wustl.edu	37	20	61574431	61574431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017896.2	+1	validated	p.R71W	1.000	118	0%	184	40.2%	-	-	possibly_damaging(0.731)	deleterious(0)	deleterious(0.712)	HMMSmart_CTLH
YTHDF1	54915	genome.wustl.edu	37	20	61846934	61846934	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017798.3	-1	validated	p.N16T	1.000	55	0%	126	31.7%	-	-	possibly_damaging(0.763)	deleterious(0.01)	deleterious(0.689)	NULL
ARFGAP1	55738	genome.wustl.edu	37	20	61917526	61917526	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000370275	+1	known	p.P343	0.000	16	0%	19	42.1%	-	-	-	-	-	NULL
EEF1A2	1917	genome.wustl.edu	37	20	62122020	62122020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001958.2	-1	reviewed	p.A281T	1.000	13	0%	24	37.5%	-	-	benign(0.355)	deleterious(0)	deleterious(0.557)	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
PRIC285	85441	genome.wustl.edu	37	20	62192732	62192732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037335.2	-1	reviewed	p.G2308	0.987	41	0%	93	35.5%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GMEB2	26205	genome.wustl.edu	37	20	62221885	62221885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012384.3	-1	reviewed	p.L384F	0.251	21	0%	54	35.2%	-	-	possibly_damaging(0.943)	tolerated(0.2)	neutral(0.436)	NULL
GMEB2	26205	genome.wustl.edu	37	20	62229211	62229211	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012384.3	-1	reviewed	p.Y120	0.220	35	0%	59	40.7%	-	-	-	-	-	HMMPfam_SAND,HMMSmart_SAND,superfamily_SAND_like
GMEB2	26205	genome.wustl.edu	37	20	62234423	62234423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012384.3	-1	reviewed	p.E84D	0.758	97	0%	171	32.7%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_SAND
RTEL1	51750	genome.wustl.edu	37	20	62294235	62294235	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032957.3	+1	reviewed	p.N177	0.976	48	0%	98	30.6%	-	-	-	-	-	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540
TNFRSF6B	8771	genome.wustl.edu	37	20	62328477	62328477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003823.2	+1	reviewed	p.F119L	0.073	9	0.000	15	0.533	-	-	possibly_damaging(0.881)	tolerated(0.07)	deleterious(0.663)	HMMPfam_TNFR_c6,HMMSmart_TNFR,superfamily_SSF57586
UCKL1	54963	genome.wustl.edu	37	20	62577060	62577060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017859.2	-1	validated	p.A200S	0.998	109	0%	226	31.9%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
UCKL1	54963	genome.wustl.edu	37	20	62577605	62577605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017859.2	-1	validated	p.S107I	1.000	16	0%	41	19.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRPF6	24148	genome.wustl.edu	37	20	62657386	62657386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012469.3	+1	reviewed	p.A668V	1.000	14	0%	49	18.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_HAT,superfamily_SSF48452
PRPF6	24148	genome.wustl.edu	37	20	62664259	62664259	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012469.3	+1	reviewed	p.C913	0.683	34	0%	76	13.2%	-	-	-	-	-	NULL
RGS19	10287	genome.wustl.edu	37	20	62705663	62705663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005873.2	-1	reviewed	p.A99V	0.994	35	0%	61	32.8%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
OPRL1	4987	genome.wustl.edu	37	20	62730108	62730108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000913.3	+1	reviewed	p.A357T	1.000	22	0%	41	46.3%	-	-	possibly_damaging(0.52)	deleterious(0.04)	deleterious(0.524)	NULL
MYT1	4661	genome.wustl.edu	37	20	62839419	62839419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004535.2	+1	reviewed	p.E290D	0.024	29	0%	55	25.5%	-	-	benign(0)	tolerated(0.97)	-	NULL
MYT1	4661	genome.wustl.edu	37	20	62850352	62850352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004535.2	+1	reviewed	p.E645D	1.000	21	0%	49	46.9%	-	-	probably_damaging(0.996)	tolerated(0.41)	deleterious(0.477)	HMMPfam_MYT1
MYT1	4661	genome.wustl.edu	37	20	62851135	62851135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004535.2	+1	reviewed	p.N681D	0.000	49	0%	111	34.2%	-	-	benign(0.136)	tolerated(0.23)	neutral(0.053)	HMMPfam_MYT1
TPTE	7179	genome.wustl.edu	37	21	10916378	10916378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199261.2	-1	validated	p.S423L	0.790	286	0%	121	9.9%	-	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE	7179	genome.wustl.edu	37	21	10971295	10971295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_199261.2	-1	validated	p.D21G	0.001	138	0%	84	31%	-	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
USP25	29761	genome.wustl.edu	37	21	17203730	17203730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013396.3	+1	validated	p.R592Q	1.000	146	0%	41	34.1%	-	-	possibly_damaging(0.439)	deleterious(0.02)	deleterious(0.526)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases
MIR125B2	406912	genome.wustl.edu	37	21	17962622	17962622	+	RNA	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000385128	+1	known	NULL	1.000	63	0%	62	16.1%	-	-	-	-	-	-
CXADR	1525	genome.wustl.edu	37	21	18933714	18933714	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001338.3	+1	reviewed	p.A251	0.001	106	0%	43	44.2%	-	-	-	-	-	NULL
NCAM2	4685	genome.wustl.edu	37	21	22841030	22841030	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004540.2	+1	reviewed	p.S608R	1.000	258	0%	62	37.1%	-	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NCAM2	4685	genome.wustl.edu	37	21	22881337	22881337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004540.2	+1	reviewed	p.G748D	1.000	120	0%	40	10%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
MRPL39	54148	genome.wustl.edu	37	21	26978930	26978930	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080794.3	-1	reviewed	p.P37	0.000	115	0%	128	39.1%	-	-	-	-	-	NULL
GABPA	2551	genome.wustl.edu	37	21	27113922	27113922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002040.3	+1	validated	p.E5*	1.000	196	0%	144	34.7%	-	-	-	-	-	NULL
GABPA	2551	genome.wustl.edu	37	21	27141316	27141316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002040.3	+1	validated	p.Y380H	1.000	30	0%	20	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,superfamily_""Winged helix"" DNA-binding domain"
APP	351	genome.wustl.edu	37	21	27254055	27254055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000484.3	-1	reviewed	p.R747C	1.000	116	0%	88	29.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APP_amyloid
APP	351	genome.wustl.edu	37	21	27369712	27369712	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000415997	-1	known	p.D86N	1.000	88	0%	40	35%	-	-	-	-	-	NULL
ADAMTS5	11096	genome.wustl.edu	37	21	28337929	28337929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007038.3	-1	reviewed	p.R261H	1.000	7	0.000	19	0.316	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
N6AMT1	29104	genome.wustl.edu	37	21	30257538	30257538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013240.3	-1	reviewed	p.A44T	0.004	14	0%	23	39.1%	-	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
USP16	10600	genome.wustl.edu	37	21	30414424	30414424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032410.1	+1	reviewed	p.T374N	1.000	135	0%	63	23.8%	-	-	probably_damaging(0.998)	tolerated(0.56)	deleterious(0.481)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP16	10600	genome.wustl.edu	37	21	30418995	30418995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032410.1	+1	reviewed	p.R455Q	1.000	24	0%	10	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
KRTAP26-1	388818	genome.wustl.edu	37	21	31692014	31692014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203405.1	-1	validated	p.P114S	0.604	87	0%	27	25.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMG
KRTAP19-3	337970	genome.wustl.edu	37	21	31864089	31864089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181609.3	-1	validated	p.G63R	0.020	234	0%	127	31.5%	-	-	unknown(0)	-	-	NULL
KRTAP11-1	337880	genome.wustl.edu	37	21	32253451	32253451	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_175858.2	-1	validated	p.C131	1.000	57	0%	28	35.7%	-	-	-	-	-	HMMPfam_PMG
TIAM1	7074	genome.wustl.edu	37	21	32598132	32598132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003253.2	-1	validated	p.K573N	1.000	225	0%	100	47%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TIAM1	7074	genome.wustl.edu	37	21	32639119	32639119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003253.2	-1	validated	p.R57Q	0.979	48	0%	44	11.4%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33060753	33060753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020706.2	-1	reviewed	p.P637L	1.000	309	0%	132	31.8%	-	-	unknown(0)	tolerated(0.42)	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33371224	33371224	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014586.1	+1	validated	p.H624	0.992	54	0%	55	43.6%	-	-	-	-	-	NULL
URB1	9875	genome.wustl.edu	37	21	33755763	33755763	+	Missense_Mutation	SNP	G	G	T	rs2833795	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014825.2	-1	validated	p.L179M	1.000	72	0%	49	32.7%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
URB1	9875	genome.wustl.edu	37	21	33756771	33756771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014825.2	-1	validated	p.T95	0.063	68	0%	58	34.5%	-	-	-	-	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34058202	34058202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003895.3	-1	validated	p.A325V	0.904	132	0%	103	10.7%	-	-	benign(0.282)	tolerated(0.17)	neutral(0.145)	HMMPfam_Syja_N
IFNGR2	3460	genome.wustl.edu	37	21	34804627	34804627	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000421802	+1	known	p.T1M	0.001	65	0%	57	47.4%	-	-	-	-	-	NULL
TMEM50B	757	genome.wustl.edu	37	21	34837668	34837668	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006134.5	-1	validated	p.S87	0.989	181	0%	62	37.1%	-	-	-	-	-	HMMPfam_UPF0220
GART	2618	genome.wustl.edu	37	21	34900888	34900888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000819.4	-1	reviewed	p.M278I	1.000	76	0%	65	32.3%	-	-	benign(0.384)	tolerated(0.06)	neutral(0.445)	HMMPfam_GARS_A,superfamily_Glutathione synthetase ATP-binding domain-like
SON	6651	genome.wustl.edu	37	21	34922033	34922033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138927.1	+1	reviewed	p.A166T	0.969	73	0%	104	30.8%	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
ITSN1	6453	genome.wustl.edu	37	21	35201991	35201991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003024.2	+1	reviewed	p.G1098D	1.000	184	0%	163	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ITSN1	6453	genome.wustl.edu	37	21	35254629	35254629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003024.2	+1	reviewed	p.N1475S	1.000	96	1%	85	38.8%	-	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ITSN1	6453	genome.wustl.edu	37	21	35257781	35257781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003024.2	+1	reviewed	p.V1600M	1.000	221	0%	194	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SLC5A3	6526	genome.wustl.edu	37	21	35468915	35468915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006933.4	+1	validated	p.G473D	1.000	151	0%	36	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_2
DOPEY2	9980	genome.wustl.edu	37	21	37571491	37571491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005128.2	+1	validated	p.E88K	1.000	148	0%	157	31.2%	-	-	benign(0.023)	tolerated(0.59)	neutral(0.005)	HMMPfam_Dopey_N
DOPEY2	9980	genome.wustl.edu	37	21	37595581	37595581	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005128.2	+1	validated	p.L435	1.000	200	0%	131	30.5%	-	-	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37609602	37609602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005128.2	+1	validated	p.R889W	0.986	58	0%	88	34.1%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37618097	37618097	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005128.2	+1	validated	p.A1273	0.012	46	0%	78	35.9%	-	-	-	-	-	NULL
MORC3	23515	genome.wustl.edu	37	21	37713699	37713699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015358.2	+1	reviewed	p.Y204C	1.000	96	0%	56	39.3%	-	-	possibly_damaging(0.871)	tolerated(0.17)	neutral(0.398)	superfamily_ATP_bd_ATPase
CHAF1B	8208	genome.wustl.edu	37	21	37783763	37783763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005441.2	+1	reviewed	p.V308M	0.000	170	0%	153	35.9%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_WD40_like
TTC3	7267	genome.wustl.edu	37	21	38467744	38467744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001894.1	+1	validated	p.R261I	1.000	126	0%	52	34.6%	-	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38519805	38519805	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001894.1	+1	validated	p.E640*	1.000	179	0%	88	31.8%	-	-	-	-	-	superfamily_Spectrin,superfamily_SSF48452
DYRK1A	1859	genome.wustl.edu	37	21	38853051	38853051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001396.3	+1	reviewed	p.Y147H	1.000	175	0%	61	19.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
BRWD1	54014	genome.wustl.edu	37	21	40570817	40570817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018963.3	-1	reviewed	p.M1842K	0.000	114	0%	40	17.5%	-	-	benign(0.006)	deleterious(0.05)	neutral(0.345)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40571219	40571219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018963.3	-1	reviewed	p.A1708V	0.002	85	0%	36	22.2%	-	-	benign(0)	tolerated(1)	-	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40590152	40590152	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000424441	-1	known	p.E181K	0.016	171	0%	43	32.6%	-	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
LCA5L	150082	genome.wustl.edu	37	21	40800107	40800107	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152505.3	-1	validated	p.Q105*	0.401	35	0%	15	46.7%	-	-	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41719648	41719648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001389.3	-1	validated	p.V387M	1.000	154	0%	51	25.5%	-	-	benign(0.372)	deleterious(0.02)	deleterious(0.502)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PRDM15	63977	genome.wustl.edu	37	21	43230618	43230618	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022115.3	-1	validated	p.H1214	1.000	35	0%	62	37.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
UMODL1	89766	genome.wustl.edu	37	21	43504227	43504227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173568.3	+1	validated	p.P118L	0.907	64	0%	117	38.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like
UMODL1	89766	genome.wustl.edu	37	21	43543236	43543236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173568.3	+1	validated	p.S1169	1.000	31	0%	52	30.8%	-	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
UBASH3A	53347	genome.wustl.edu	37	21	43852245	43852245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018961.2	+1	validated	p.R402C	1.000	98	0%	113	33.6%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
SLC37A1	54020	genome.wustl.edu	37	21	43945893	43945893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018964.3	+1	reviewed	p.A22S	1.000	367	0%	399	21.6%	-	-	benign(0.005)	tolerated(0.29)	neutral(0.029)	superfamily_MFS general substrate transporter
SLC37A1	54020	genome.wustl.edu	37	21	43962556	43962556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018964.3	+1	reviewed	p.V177I	1.000	49	0%	77	44.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
WDR4	10785	genome.wustl.edu	37	21	44283567	44283567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018669.4	-1	reviewed	p.S146P	1.000	228	0.4%	324	33.6%	-	-	possibly_damaging(0.857)	deleterious(0)	deleterious(0.776)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CBS	875	genome.wustl.edu	37	21	44478947	44478947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000071.2	-1	reviewed	p.A452V	0.071	13	0%	27	40.7%	-	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
RRP1B	23076	genome.wustl.edu	37	21	45096660	45096660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015056.2	+1	validated	p.V221I	0.304	55	0%	81	45.7%	-	-	possibly_damaging(0.937)	tolerated(0.15)	deleterious(0.624)	NULL
PDXK	8566	genome.wustl.edu	37	21	45165994	45165994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003681.4	+1	reviewed	p.G122	0.965	318	0%	466	35.6%	-	-	-	-	-	superfamily_Ribokinase-like
RRP1	8568	genome.wustl.edu	37	21	45217560	45217560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003683.5	+1	reviewed	p.A201T	0.340	88	0%	166	31.3%	-	-	benign(0.16)	tolerated(0.16)	neutral(0.074)	HMMPfam_Nop52
AGPAT3	56894	genome.wustl.edu	37	21	45379596	45379596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037553.1	+1	reviewed	p.V12M	0.201	79	0%	123	36.6%	-	-	possibly_damaging(0.789)	deleterious(0.01)	deleterious(0.702)	NULL
AGPAT3	56894	genome.wustl.edu	37	21	45401010	45401010	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037553.1	+1	reviewed	p.G328	0.032	177	0%	320	11.6%	-	-	-	-	-	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45506806	45506806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003274.4	+1	reviewed	p.A835V	0.000	29	0%	32	40.6%	-	-	benign(0.02)	tolerated(0.29)	neutral(0.030)	NULL
PWP2	5822	genome.wustl.edu	37	21	45548494	45548494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005049.2	+1	validated	p.D858N	0.386	32	0%	48	29.2%	-	-	benign(0.027)	tolerated(0.18)	neutral(0.058)	HMMPfam_PWP2
AIRE	326	genome.wustl.edu	37	21	45713792	45713792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000383.2	+1	reviewed	p.G467R	0.946	12	0%	30	43.3%	-	-	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
PFKL	5211	genome.wustl.edu	37	21	45726572	45726572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002626.4	+1	reviewed	p.A32T	1.000	118	0%	221	41.6%	-	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_PFK,superfamily_Phosphofructokinase
PFKL	5211	genome.wustl.edu	37	21	45730904	45730904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002626.4	+1	reviewed	p.V59M	1.000	53	0%	101	29.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PFK,superfamily_Phosphofructokinase
PFKL	5211	genome.wustl.edu	37	21	45746077	45746077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002626.4	+1	reviewed	p.V709M	0.993	33	0%	64	42.2%	-	-	possibly_damaging(0.685)	tolerated(0.1)	deleterious(0.531)	superfamily_Phosphofructokinase
TRPM2	7226	genome.wustl.edu	37	21	45826645	45826645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003307.3	+1	reviewed	p.D987N	0.997	28	0%	64	45.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_CHITINASE_18,HMMPfam_Ion_trans
TRPM2	7226	genome.wustl.edu	37	21	45837841	45837841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003307.3	+1	reviewed	p.D1060N	1.000	37	0%	68	32.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC3	81543	genome.wustl.edu	37	21	45876573	45876573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030891.3	+1	validated	p.T16A	0.000	11	0%	28	25%	-	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
TSPEAR	54084	genome.wustl.edu	37	21	45929119	45929119	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144991.2	-1	provisional	p.Q573*	0.988	45	0%	87	33.3%	-	-	-	-	-	HMMPfam_EPTP
KRTAP10-1	386677	genome.wustl.edu	37	21	45959440	45959440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198691.2	-1	reviewed	p.C198*	0.060	266	0%	371	35.6%	-	-	-	-	-	HMMPfam_Keratin_B2
KRTAP10-11	386678	genome.wustl.edu	37	21	46066746	46066746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198692.2	+1	validated	p.S124Y	0.038	263	0%	408	35%	-	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Keratin_B2
KRTAP12-4	386684	genome.wustl.edu	37	21	46074502	46074502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198698.1	-1	provisional	p.C10	0.062	32	0%	59	44.1%	-	-	-	-	-	NULL
LOC100130599	100130599	genome.wustl.edu	37	21	46122384	46122384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343756.1	+1	model	p.C214R	0.867	182	0%	303	38%	-	-	-	-	-	HMMPfam_Keratin_B2
ITGB2	3689	genome.wustl.edu	37	21	46308684	46308684	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000211.3	-1	reviewed	p.E668	0.923	30	0%	50	36%	-	-	-	-	-	HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail
ITGB2	3689	genome.wustl.edu	37	21	46321551	46321551	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000211.3	-1	reviewed	p.Q199	0.995	121	0%	184	41.3%	-	-	-	-	-	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
ITGB2	3689	genome.wustl.edu	37	21	46326905	46326905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000211.3	-1	reviewed	p.A85T	0.017	52	0%	118	29.7%	-	-	benign(0.199)	tolerated(0.49)	neutral(0.029)	HMMPfam_Integrin_beta,HMMSmart_INB
C21orf67	84536	genome.wustl.edu	37	21	46354949	46354949	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000397841	-1	known	p.P134	0.005	38	0%	57	14%	-	-	-	-	-	NULL
C21orf67	84536	genome.wustl.edu	37	21	46355742	46355742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000397841	-1	known	p.R47C	0.000	37	0%	111	32.4%	-	-	benign(0.013)	-	-	NULL
SLC19A1	6573	genome.wustl.edu	37	21	46951810	46951810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194255.1	-1	validated	p.R148C	0.128	15	0%	27	37%	-	-	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
COL6A1	1291	genome.wustl.edu	37	21	47422292	47422292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001848.2	+1	reviewed	p.V743M	0.825	17	0%	49	38.8%	-	-	unknown(0)	tolerated(0.15)	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
FTCD	10841	genome.wustl.edu	37	21	47566222	47566222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006657.2	-1	reviewed	p.L309R	1.000	30	0%	65	35.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Formiminotransferase domain of formiminotransferase-cyclodeaminase.,HMMPfam_FTCD
MCM3AP	8888	genome.wustl.edu	37	21	47697447	47697447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003906.3	-1	reviewed	p.R618W	1.000	55	0%	86	27.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCNT	5116	genome.wustl.edu	37	21	47831224	47831224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006031.5	+1	reviewed	p.I1746S	1.000	47	0%	79	32.9%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PCNT	5116	genome.wustl.edu	37	21	47845845	47845845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006031.5	+1	reviewed	p.D2427G	0.000	29	0%	77	40.3%	-	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47931448	47931448	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015151.3	+1	reviewed	p.R341	0.010	43	0%	33	27.3%	-	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
DIP2A	23181	genome.wustl.edu	37	21	47971782	47971782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015151.3	+1	reviewed	p.P999S	0.999	32	0%	66	47%	-	-	benign(0.14)	tolerated(0.12)	neutral(0.273)	superfamily_Acetyl-CoA synthetase-like
DIP2A	23181	genome.wustl.edu	37	21	47978203	47978203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015151.3	+1	reviewed	p.A1289V	0.971	16	0%	30	33.3%	-	-	benign(0.041)	tolerated(0.09)	neutral(0.299)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DIP2A	23181	genome.wustl.edu	37	21	47983778	47983778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015151.3	+1	reviewed	p.P1366L	1.000	86	0%	118	39.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
S100B	6285	genome.wustl.edu	37	21	48022245	48022245	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006272.2	-1	reviewed	p.L28	1.000	169	0%	157	30.6%	-	-	-	-	-	HMMPfam_S_100,superfamily_EF-hand
OR11H1	81061	genome.wustl.edu	37	22	16449653	16449653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005239.1	-1	provisional	p.A51E	0.042	572	0%	142	14.1%	-	-	benign(0.064)	deleterious(0)	neutral(0.449)	superfamily_SSF81321
CCT8L2	150160	genome.wustl.edu	37	22	17071848	17071848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014406.4	-1	validated	p.E531D	0.002	132	0%	161	9.9%	-	-	benign(0.083)	tolerated(0.57)	neutral(0.012)	NULL
GAB4	128954	genome.wustl.edu	37	22	17451023	17451023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037814.1	-1	provisional	p.M249I	0.111	139	0%	103	35.9%	-	-	benign(0.036)	tolerated(0.13)	neutral(0.255)	NULL
CECR1	51816	genome.wustl.edu	37	22	17662415	17662415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017424.2	-1	reviewed	p.K498N	0.999	136	0%	114	36.8%	-	-	benign(0.027)	tolerated(0.37)	neutral(0.021)	superfamily_SSF51556
CECR2	27443	genome.wustl.edu	37	22	17990854	17990854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000400573	+1	known	p.P272T	0.996	91	0%	73	41.1%	-	-	benign(0.013)	tolerated(0.07)	neutral(0.320)	NULL
SLC25A18	83733	genome.wustl.edu	37	22	18070016	18070016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031481.1	+1	provisional	p.R175H	0.142	24	0%	45	37.8%	-	-	benign(0.025)	deleterious(0.03)	neutral(0.365)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
BCL2L13	23786	genome.wustl.edu	37	22	18210087	18210087	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015367.2	+1	validated	p.N415	0.000	66	0%	32	37.5%	-	-	-	-	-	NULL
MICAL3	57553	genome.wustl.edu	37	22	18371974	18371974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015241.2	-1	provisional	p.Q573*	1.000	104	1%	115	47.8%	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MICAL3	57553	genome.wustl.edu	37	22	18378103	18378103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015241.2	-1	provisional	p.D466N	1.000	244	0%	154	39%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_Calponin-homology domain CH-domain
DGCR2	9993	genome.wustl.edu	37	22	19035979	19035979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005137.2	-1	reviewed	p.C327Y	1.000	88	0%	78	34.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_VWC,PatternScan_VWFC_1
TSSK2	23617	genome.wustl.edu	37	22	19119445	19119445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053006.4	+1	validated	p.S178L	0.998	41	0%	76	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DGCR14	8220	genome.wustl.edu	37	22	19121726	19121726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022719.2	-1	reviewed	p.A472T	1.000	111	0%	190	21.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19221009	19221009	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007098.3	-1	reviewed	p.L435R	1.000	67	0%	58	25.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
UFD1L	7353	genome.wustl.edu	37	22	19443292	19443292	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005659.6	-1	reviewed	e10-1	1.000	139	0%	95	37.9%	-	-	-	-	-	-
GNB1L	54584	genome.wustl.edu	37	22	19776244	19776244	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_053004.2	-1	validated	p.Y324	0.711	12	0%	17	47.1%	-	-	-	-	-	NULL
DGCR8	54487	genome.wustl.edu	37	22	20073611	20073611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022720.5	+1	validated	p.T42M	1.000	35	0%	61	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGCR8	54487	genome.wustl.edu	37	22	20074813	20074813	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022720.5	+1	validated	p.P283	0.833	198	0%	270	40.7%	-	-	-	-	-	NULL
TRMT2A	27037	genome.wustl.edu	37	22	20102108	20102108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022727.4	-1	validated	p.A408T	1.000	68	0%	121	32.2%	-	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZDHHC8	29801	genome.wustl.edu	37	22	20130756	20130756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013373.3	+1	reviewed	p.E535*	1.000	13	0%	30	23.3%	-	-	-	-	-	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20457412	20457412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015672.1	-1	validated	p.N1297S	0.006	75	0%	155	48.4%	-	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20457597	20457597	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015672.1	-1	validated	p.C1235	0.995	136	0%	239	17.2%	-	-	-	-	-	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20458025	20458025	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015672.1	-1	validated	p.L1093	1.000	132	0%	288	15.3%	-	-	-	-	-	superfamily_Fibronectin type III
RIMBP3	85376	genome.wustl.edu	37	22	20458733	20458733	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015672.1	-1	validated	p.L857	1.000	168	0%	342	17.5%	-	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
ZNF74	7625	genome.wustl.edu	37	22	20761076	20761076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003426.2	+1	validated	p.A585T	0.022	58	0%	74	29.7%	-	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_C2H2 and C2HC zinc fingers
MED15	51586	genome.wustl.edu	37	22	20937505	20937505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003891.1	+1	reviewed	p.R548H	1.000	44	0%	67	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM191A	84222	genome.wustl.edu	37	22	21055630	21055630	+	RNA	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026815.1	+1	predicted	NULL	0.567	148	0%	236	36.9%	-	-	-	-	-	-
PI4KA	5297	genome.wustl.edu	37	22	21068776	21068776	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058004.2	-1	reviewed	p.R1753*	1.000	299	0%	462	31.8%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
PI4KA	5297	genome.wustl.edu	37	22	21119441	21119441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_058004.2	-1	reviewed	p.L783M	1.000	83	0%	66	31.8%	-	-	probably_damaging(0.992)	tolerated(0.41)	neutral(0.463)	NULL
AIFM3	150209	genome.wustl.edu	37	22	21327725	21327725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144704.2	+1	validated	p.R54H	0.965	23	0%	43	34.9%	-	-	benign(0.036)	tolerated(0.17)	neutral(0.061)	NULL
THAP7	80764	genome.wustl.edu	37	22	21354544	21354544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008695.1	-1	validated	p.Q185H	0.994	23	0%	31	32.3%	-	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
SLC7A4	6545	genome.wustl.edu	37	22	21385120	21385120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004173.2	-1	validated	p.A328T	1.000	23	0%	59	40.7%	-	-	benign(0.02)	deleterious(0.03)	neutral(0.365)	HMMPfam_AA_permease
HIC2	23119	genome.wustl.edu	37	22	21799743	21799743	+	Missense_Mutation	SNP	G	G	A	rs188340044	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015094.2	+1	validated	p.A187T	0.000	14	0%	25	32%	-	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
CCDC116	164592	genome.wustl.edu	37	22	21988369	21988369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152612.2	+1	provisional	p.R44H	0.000	44	0%	82	36.6%	-	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
PPIL2	23759	genome.wustl.edu	37	22	22037492	22037492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_148176.2	+1	reviewed	p.F167L	1.000	115	0%	197	34.5%	-	-	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	NULL
PPM1F	9647	genome.wustl.edu	37	22	22280010	22280010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014634.2	-1	reviewed	p.L306S	1.000	29	0%	53	35.8%	-	-	possibly_damaging(0.694)	tolerated(0.27)	neutral(0.282)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
TOP3B	8940	genome.wustl.edu	37	22	22312958	22312958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000457270	-1	known	p.S466L	0.731	95	0%	172	37.8%	-	-	-	-	-	NULL
IGLV10-54	28772	genome.wustl.edu	37	22	22569632	22569632	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390287	+1	known	p.C108	0.133	35	0%	66	27.3%	-	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
VPREB1	7441	genome.wustl.edu	37	22	22599673	22599673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007128.2	+1	reviewed	p.S121I	0.000	16	0%	40	20%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
IGLV5-52	28779	genome.wustl.edu	37	22	22673464	22673464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390289	+1	known	p.R86H	0.003	96	0%	75	38.7%	-	-	benign(0.015)	deleterious(0.03)	neutral(0.365)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-40	28825	genome.wustl.edu	37	22	22764591	22764591	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000390299	+1	known	p.S111	0.000	91	0%	52	36.5%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF280A	129025	genome.wustl.edu	37	22	22869036	22869036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080740.3	-1	reviewed	p.L307I	1.000	336	0.3%	304	34.2%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00355
PRAME	23532	genome.wustl.edu	37	22	22892536	22892536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006115.3	-1	reviewed	p.D189N	0.021	118	0%	83	10.8%	-	-	possibly_damaging(0.704)	tolerated(0.22)	neutral(0.295)	superfamily_RNI-like
BCR	613	genome.wustl.edu	37	22	23656167	23656167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004327.3	+1	reviewed	p.P1157L	0.960	48	0%	63	41.3%	-	-	possibly_damaging(0.892)	deleterious(0.04)	deleterious(0.700)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
RGL4	266747	genome.wustl.edu	37	22	24036575	24036575	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153615.1	+1	provisional	p.I318	0.991	84	0%	91	27.5%	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ZNF70	7621	genome.wustl.edu	37	22	24086361	24086361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021916.2	-1	provisional	p.L323I	1.000	204	0%	197	36%	-	-	possibly_damaging(0.756)	deleterious(0)	deleterious(0.724)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MMP11	4320	genome.wustl.edu	37	22	24125726	24125726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005940.3	+1	reviewed	p.L488F	1.000	61	0%	128	36.7%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24437718	24437718	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012295.2	+1	reviewed	p.L114	1.000	235	0%	113	10.6%	-	-	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
ADORA2A	135	genome.wustl.edu	37	22	24836592	24836592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000675.4	+1	reviewed	p.I125T	1.000	75	0%	81	39.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIWIL3	440822	genome.wustl.edu	37	22	25152540	25152540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008496.2	-1	validated	p.L163R	0.529	188	0%	110	37.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF101690
SGSM1	129049	genome.wustl.edu	37	22	25308611	25308611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039948.2	+1	validated	p.E995D	1.000	100	0%	67	29.9%	-	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
CRYBB3	1417	genome.wustl.edu	37	22	25597388	25597388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004076.3	+1	reviewed	p.E9K	0.960	35	0%	41	31.7%	-	-	possibly_damaging(0.903)	tolerated(0.11)	deleterious(0.629)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26736438	26736438	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021115.4	+1	validated	p.Y684	0.111	67	0%	31	32.3%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CRYBB1	1414	genome.wustl.edu	37	22	26997873	26997873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001887.3	-1	reviewed	p.R182H	1.000	60	0%	38	50%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
MN1	4330	genome.wustl.edu	37	22	28193153	28193153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002430.2	-1	reviewed	p.P1127S	1.000	5	0.000	18	0.444	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
MN1	4330	genome.wustl.edu	37	22	28193352	28193352	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002430.2	-1	reviewed	p.S1060	0.299	5	0.000	16	0.438	-	-	-	-	-	NULL
MN1	4330	genome.wustl.edu	37	22	28193904	28193904	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002430.2	-1	reviewed	p.S876	1.000	28	0%	91	33%	-	-	-	-	-	NULL
MN1	4330	genome.wustl.edu	37	22	28194827	28194827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002430.2	-1	reviewed	p.R569W	1.000	5	0.000	12	0.667	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC28	23331	genome.wustl.edu	37	22	28395120	28395120	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145418.1	-1	validated	p.E1509	1.000	39	0%	54	29.6%	-	-	-	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29534700	29534700	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032045.4	+1	reviewed	p.S351	0.861	137	0%	124	15.3%	-	-	-	-	-	NULL
RHBDD3	25807	genome.wustl.edu	37	22	29656131	29656131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012265.1	-1	provisional	p.V360D	0.994	22	0%	44	29.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
GAS2L1	10634	genome.wustl.edu	37	22	29704488	29704488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152237.1	+1	reviewed	p.K131N	1.000	43	0%	95	38.9%	-	-	probably_damaging(0.98)	tolerated(0.05)	deleterious(0.769)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
MTMR3	8897	genome.wustl.edu	37	22	30416318	30416318	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021090.3	+1	reviewed	p.V890	0.000	49	0%	57	35.1%	-	-	-	-	-	NULL
LIF	3976	genome.wustl.edu	37	22	30639828	30639828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002309.3	-1	reviewed	p.A141T	0.003	338	0%	540	36.5%	-	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMPfam_LIF_OSM,HMMSmart_SM00080,superfamily_4-helical cytokines
CCDC157	550631	genome.wustl.edu	37	22	30772570	30772570	+	Missense_Mutation	SNP	C	C	T	rs185099385	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001017437.2	+1	validated	p.R699W	0.031	45	0%	118	41.5%	-	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	NULL
RNF215	200312	genome.wustl.edu	37	22	30782611	30782611	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000215798	-1	known	p.P79T	1.000	40	0%	74	27%	-	-	-	-	-	NULL
SEC14L2	23541	genome.wustl.edu	37	22	30805457	30805457	+	Missense_Mutation	SNP	C	C	T	rs144995453	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012429.2	+1	reviewed	p.R188C	1.000	243	0%	216	12%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
SEC14L2	23541	genome.wustl.edu	37	22	30812296	30812296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012429.2	+1	reviewed	p.R329W	1.000	61	0%	47	27.7%	-	-	benign(0.428)	deleterious(0.03)	deleterious(0.504)	superfamily_SSF101576
TCN2	6948	genome.wustl.edu	37	22	31013385	31013385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000355.3	+1	reviewed	p.L337I	0.029	77	0%	113	20.4%	-	-	benign(0.003)	tolerated(0.39)	neutral(0.016)	NULL
SMTN	6525	genome.wustl.edu	37	22	31487370	31487370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_134270.1	+1	reviewed	p.G454E	1.000	5	0.000	18	0.278	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SFI1	9814	genome.wustl.edu	37	22	32009143	32009143	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001007467.1	+1	validated	p.Q836*	0.001	43	0%	82	30.5%	-	-	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32188025	32188025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014662.2	+1	validated	p.N211D	1.000	208	0%	148	33.8%	-	-	possibly_damaging(0.559)	tolerated(0.12)	neutral(0.451)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32293560	32293560	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433147	+1	known	p.R808*	0.005	138	0%	106	35.8%	-	-	-	-	-	NULL
C22orf42	150297	genome.wustl.edu	37	22	32547507	32547507	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001010859.1	-1	provisional	p.H144	0.000	118	0%	50	32%	-	-	-	-	-	NULL
SLC5A4	6527	genome.wustl.edu	37	22	32627031	32627031	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014227.2	-1	validated	p.C351	0.996	89	0%	27	37%	-	-	-	-	-	HMMPfam_SSF
RFPL3-AS1	10737	genome.wustl.edu	37	22	32756123	32756123	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_001450.2	-1	provisional	NULL	0.000	65	0%	64	34.4%	-	-	-	-	-	-
C22orf28	51493	genome.wustl.edu	37	22	32789918	32789918	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014306.4	-1	validated	p.Q417	0.999	138	0%	71	11.3%	-	-	-	-	-	HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602
BPIFC	254240	genome.wustl.edu	37	22	32841906	32841906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174932.2	-1	validated	p.F151C	0.043	108	0.9%	55	43.6%	-	-	benign(0.313)	tolerated(0.08)	neutral(0.397)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
FBXO7	25793	genome.wustl.edu	37	22	32875095	32875095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012179.3	+1	reviewed	p.A84S	1.000	191	0%	169	34.9%	-	-	possibly_damaging(0.466)	tolerated(0.26)	neutral(0.187)	NULL
TIMP3	7078	genome.wustl.edu	37	22	33245505	33245505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000362.4	+1	reviewed	p.T63I	1.000	156	0%	82	23.2%	-	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
TIMP3	7078	genome.wustl.edu	37	22	33255244	33255244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000382049	+1	known	p.R175W	0.232	64	0%	35	34.3%	-	-	benign(0)	-	-	NULL
SYN3	8224	genome.wustl.edu	37	22	33376684	33376684	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003490.3	-1	reviewed	p.S105	0.583	170	0%	58	43.1%	-	-	-	-	-	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
MCM5	4174	genome.wustl.edu	37	22	35812392	35812392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006739.3	+1	reviewed	p.A470T	1.000	37	0%	55	25.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBFOX2	23543	genome.wustl.edu	37	22	36164307	36164307	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001082578.1	-1	reviewed	p.I251	1.000	118	0%	39	25.6%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
MYH9	4627	genome.wustl.edu	37	22	36681955	36681955	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.E1702	1.000	26	0%	60	28.3%	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH9	4627	genome.wustl.edu	37	22	36685241	36685241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.R1483W	1.000	27	0%	51	29.4%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Myosin_tail_1
MYH9	4627	genome.wustl.edu	37	22	36702073	36702073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.V688M	1.000	25	0%	33	51.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH9	4627	genome.wustl.edu	37	22	36705344	36705344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.S609L	1.000	158	0%	242	41.3%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH9	4627	genome.wustl.edu	37	22	36715590	36715590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.N368S	1.000	81	0%	127	33.9%	-	-	benign(0.049)	deleterious(0.01)	neutral(0.409)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH9	4627	genome.wustl.edu	37	22	36717854	36717854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002473.4	-1	reviewed	p.R240C	1.000	108	0%	109	35.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TST	7263	genome.wustl.edu	37	22	37414578	37414578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003312.4	-1	reviewed	p.D66Y	0.987	7	0.000	29	0.310	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
KCTD17	79734	genome.wustl.edu	37	22	37455383	37455383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024681.2	+1	validated	p.G180S	1.000	30	0%	62	32.3%	-	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	NULL
KCTD17	79734	genome.wustl.edu	37	22	37456935	37456935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024681.2	+1	validated	p.Q236*	1.000	193	0%	394	39.6%	-	-	-	-	-	NULL
IL2RB	3560	genome.wustl.edu	37	22	37538551	37538551	+	Missense_Mutation	SNP	G	G	A	rs117728347	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000878.2	-1	reviewed	p.R69W	0.000	45	0%	99	27.3%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
C1QTNF6	114904	genome.wustl.edu	37	22	37578264	37578264	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031910.3	-1	validated	p.T267	1.000	39	0%	67	34.3%	-	-	-	-	-	HMMPfam_C1q,superfamily_TNF_like
C1QTNF6	114904	genome.wustl.edu	37	22	37578403	37578403	+	Missense_Mutation	SNP	G	G	A	rs182559799	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031910.3	-1	validated	p.A221V	1.000	44	0%	63	34.9%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_C1q,superfamily_TNF_like
NOL12	79159	genome.wustl.edu	37	22	38086735	38086735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024313.2	+1	validated	p.A138V	0.000	70	0%	97	28.9%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_Nop25
TRIOBP	11078	genome.wustl.edu	37	22	38119410	38119410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039141.2	+1	reviewed	p.R283*	0.000	198	0%	344	34.6%	-	-	-	-	-	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38122301	38122301	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039141.2	+1	reviewed	p.P1246	0.035	11	0%	30	33.3%	-	-	-	-	-	NULL
KDELR3	11015	genome.wustl.edu	37	22	38864311	38864311	+	Silent	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016657.1	+1	reviewed	p.R25	1.000	33	0%	71	39.4%	-	-	-	-	-	NULL
DDX17	10521	genome.wustl.edu	37	22	38897249	38897249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001098504.1	-1	reviewed	p.K108N	1.000	168	0%	172	44.2%	-	-	possibly_damaging(0.757)	tolerated(0.15)	deleterious(0.520)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DMC1	11144	genome.wustl.edu	37	22	38917656	38917656	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007068.2	-1	reviewed	p.R304*	0.976	187	0%	127	42.5%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540
DMC1	11144	genome.wustl.edu	37	22	38948703	38948703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007068.2	-1	reviewed	p.T130I	1.000	319	0%	230	36.1%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540
CBY1	25776	genome.wustl.edu	37	22	39064136	39064136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002880.1	+1	reviewed	p.S26F	0.993	72	0%	70	34.3%	-	-	benign(0.049)	tolerated(0.27)	neutral(0.037)	NULL
GTPBP1	9567	genome.wustl.edu	37	22	39120394	39120394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004286.4	+1	reviewed	p.A351S	1.000	77	0%	89	33.7%	-	-	possibly_damaging(0.929)	deleterious(0.04)	deleterious(0.725)	HMMPfam_GTP_EFTU,superfamily_SSF52540
SUN2	25777	genome.wustl.edu	37	22	39132378	39132378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015374.1	-1	validated	p.T683M	0.000	47	2.1%	106	41.5%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_Sad1_UNC
SUN2	25777	genome.wustl.edu	37	22	39147010	39147010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015374.1	-1	validated	p.G106D	0.897	15	0%	41	31.7%	-	-	benign(0.229)	tolerated(0.41)	neutral(0.038)	NULL
CBX6	23466	genome.wustl.edu	37	22	39262486	39262486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014292.3	-1	validated	p.A323S	0.842	9	0.000	28	0.464	-	-	possibly_damaging(0.791)	tolerated(0.4)	neutral(0.312)	NULL
APOBEC3F	200316	genome.wustl.edu	37	22	39441178	39441178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_145298.5	+1	validated	p.C135Y	0.000	122	0%	195	35.9%	-	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3G	60489	genome.wustl.edu	37	22	39474961	39474961	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021822.2	+1	reviewed	p.R14	0.000	150	0%	159	30.8%	-	-	-	-	-	HMMPfam_APOBEC_N
RPL3	6122	genome.wustl.edu	37	22	39709298	39709298	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000967.3	-1	reviewed	p.T355	1.000	64	0%	130	35.4%	-	-	-	-	-	superfamily_Translat_factor
SYNGR1	9145	genome.wustl.edu	37	22	39770523	39770523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004711.4	+1	reviewed	p.R101H	1.000	14	0%	25	24%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MARVEL
SYNGR1	9145	genome.wustl.edu	37	22	39771954	39771954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000216155	+1	known	p.H117Q	0.014	53	0%	78	42.3%	-	-	unknown(0)	-	-	HMMPfam_MARVEL
TNRC6B	23112	genome.wustl.edu	37	22	40661854	40661854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015088.2	+1	validated	p.N540K	1.000	66	0%	69	29%	-	-	possibly_damaging(0.643)	deleterious(0.01)	deleterious(0.631)	NULL
MCHR1	2847	genome.wustl.edu	37	22	41075470	41075470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005297.3	+1	reviewed	p.K7N	1.000	35	0%	47	21.3%	-	-	unknown(0)	deleterious(0)	-	NULL
SLC25A17	10478	genome.wustl.edu	37	22	41188666	41188666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006358.2	-1	validated	p.R66Q	1.000	69	0%	78	19.2%	-	-	unknown(0)	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
EP300	2033	genome.wustl.edu	37	22	41548329	41548329	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001429.3	+1	reviewed	p.P1039	0.998	39	0%	13	46.2%	-	-	-	-	-	superfamily_Bromodomain
CHADL	150356	genome.wustl.edu	37	22	41636834	41636834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000445342	-1	known	p.A22D	0.001	44	0%	102	20.6%	-	-	possibly_damaging(0.948)	-	-	NULL
RANGAP1	5905	genome.wustl.edu	37	22	41645345	41645345	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002883.2	-1	reviewed	p.A561	0.163	25	0%	74	32.4%	-	-	-	-	-	HMMPfam_RanGAP1_C,superfamily_RanGAP1_C
RANGAP1	5905	genome.wustl.edu	37	22	41652269	41652269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002883.2	-1	reviewed	p.I305T	1.000	41	0%	91	42.9%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF52047
ZC3H7B	23264	genome.wustl.edu	37	22	41751520	41751520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017590.4	+1	reviewed	p.K694N	1.000	76	0%	198	40.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
PMM1	5372	genome.wustl.edu	37	22	41974874	41974874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002676.2	-1	reviewed	p.I162	1.000	78	0%	148	28.4%	-	-	-	-	-	HMMPfam_PMM,superfamily_HAD-like
C22orf46	79640	genome.wustl.edu	37	22	42086647	42086647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142964.1	+1	validated	p.L6M	0.955	92	0%	141	20.6%	-	-	benign(0.176)	-	-	NULL
MEI1	150365	genome.wustl.edu	37	22	42166937	42166937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152513.3	+1	validated	p.S839N	1.000	108	0%	75	26.7%	-	-	probably_damaging(0.998)	tolerated(0.36)	deleterious(0.494)	NULL
SREBF2	6721	genome.wustl.edu	37	22	42273401	42273401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004599.2	+1	reviewed	p.R519C	1.000	90	0%	78	44.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CENPM	79019	genome.wustl.edu	37	22	42342459	42342459	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024053.3	-1	validated	p.D33	0.055	16	0%	27	25.9%	-	-	-	-	-	NULL
NAGA	4668	genome.wustl.edu	37	22	42463142	42463142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000262.2	-1	reviewed	p.F159L	1.000	33	0%	65	40%	-	-	benign(0.071)	deleterious(0.01)	neutral(0.411)	superfamily_Glyco_hydro_cat
LOC100289204	100289204	genome.wustl.edu	37	22	42538565	42538565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343781.1	+1	model	p.A247V	1.000	47	0%	59	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCF20	6942	genome.wustl.edu	37	22	42606653	42606653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005650.1	-1	reviewed	p.Q1553H	0.978	331	0%	352	13.6%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PACSIN2	11252	genome.wustl.edu	37	22	43287043	43287043	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007229.3	-1	reviewed	p.H121	1.000	125	0%	149	40.9%	-	-	-	-	-	NULL
TTLL12	23170	genome.wustl.edu	37	22	43575693	43575693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015140.3	-1	validated	p.P258S	1.000	47	0%	113	38.9%	-	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43610139	43610139	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173050.2	-1	validated	p.D670	0.948	9	0.000	29	0.414	-	-	-	-	-	superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3
MPPED1	758	genome.wustl.edu	37	22	43820999	43820999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001044370.1	+1	validated	p.R3H	0.933	28	0%	53	13.2%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SAMM50	25813	genome.wustl.edu	37	22	44368185	44368185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015380.4	+1	validated	p.S131N	1.000	243	0%	195	11.3%	-	-	benign(0.188)	tolerated(0.05)	neutral(0.363)	NULL
PARVG	64098	genome.wustl.edu	37	22	44586488	44586488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137605.1	+1	validated	p.R149H	0.991	64	0%	97	41.2%	-	-	benign(0.027)	tolerated(1)	neutral(0.002)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
PARVG	64098	genome.wustl.edu	37	22	44592081	44592081	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137605.1	+1	validated	p.N210	0.000	164	0%	275	40.7%	-	-	-	-	-	superfamily_Calponin-homology domain CH-domain
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45122507	45122507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_181334.4	+1	reviewed	p.F10L	1.000	60	0%	108	28.7%	-	-	probably_damaging(0.996)	tolerated(0.53)	deleterious(0.469)	NULL
PHF21B	112885	genome.wustl.edu	37	22	45312378	45312378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138415.3	-1	validated	p.A116T	0.999	41	0%	83	45.8%	-	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
KIAA0930	23313	genome.wustl.edu	37	22	45601161	45601161	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015264.1	-1	validated	p.S156	1.000	77	0%	160	33.1%	-	-	-	-	-	HMMPfam_DUF2045
FBLN1	2192	genome.wustl.edu	37	22	45970525	45970525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006486.2	+1	reviewed	p.R611H	0.095	32	0%	37	29.7%	-	-	possibly_damaging(0.942)	tolerated(0.09)	deleterious(0.683)	NULL
MIRLET7B	406884	genome.wustl.edu	37	22	46494399	46494399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000381051	+1	known	p.Q37R	0.000	85	0%	176	37.5%	-	-	unknown(0)	-	-	NULL
PKDREJ	10343	genome.wustl.edu	37	22	46653089	46653089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006071.1	-1	reviewed	p.S2044Y	0.103	99	0%	161	37.3%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_PKD_channel
CELSR1	9620	genome.wustl.edu	37	22	46761231	46761231	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014246.1	-1	reviewed	p.S2817	1.000	58	0%	117	38.5%	-	-	-	-	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46795696	46795696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014246.1	-1	reviewed	p.L1777P	1.000	114	0%	201	29.4%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
GRAMD4	23151	genome.wustl.edu	37	22	47070610	47070610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015124.2	+1	validated	p.D481N	0.999	39	0%	89	37.1%	-	-	possibly_damaging(0.944)	tolerated(0.08)	deleterious(0.689)	HMMPfam_GRAM,HMMSmart_SM00568
BRD1	23774	genome.wustl.edu	37	22	50191638	50191638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014577.1	-1	reviewed	p.C638Y	1.000	119	0%	225	36.4%	-	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRD1	23774	genome.wustl.edu	37	22	50191759	50191759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014577.1	-1	reviewed	p.D598Y	1.000	95	0%	193	34.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BRD1	23774	genome.wustl.edu	37	22	50192706	50192706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014577.1	-1	reviewed	p.R529Q	1.000	33	0%	80	38.8%	-	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
BRD1	23774	genome.wustl.edu	37	22	50216685	50216685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014577.1	-1	reviewed	p.R427S	1.000	153	0%	273	36.3%	-	-	probably_damaging(0.958)	tolerated(0.39)	neutral(0.418)	NULL
ZBED4	9889	genome.wustl.edu	37	22	50278339	50278339	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014838.2	+1	validated	p.N343	0.973	18	0%	39	41%	-	-	-	-	-	NULL
ZBED4	9889	genome.wustl.edu	37	22	50280106	50280106	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014838.2	+1	validated	p.S932	0.008	24	0%	41	24.4%	-	-	-	-	-	NULL
ZBED4	9889	genome.wustl.edu	37	22	50280575	50280575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014838.2	+1	validated	p.L1089M	0.988	39	0%	77	46.8%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_hATC
PIM3	415116	genome.wustl.edu	37	22	50356365	50356365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001852.3	+1	validated	p.W215C	1.000	23	0%	34	35.3%	-	-	possibly_damaging(0.875)	deleterious(0.03)	deleterious(0.705)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
IL17REL	400935	genome.wustl.edu	37	22	50436144	50436144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001694.2	-1	validated	p.R283W	0.324	79	0%	173	39.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50528925	50528925	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000428564	+1	known	p.R7	0.001	68	0%	144	39.6%	-	-	-	-	-	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50547246	50547246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018995.2	+1	reviewed	p.A239V	0.992	131	0%	96	36.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50591506	50591506	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018995.2	+1	reviewed	p.H975	0.945	139	0%	223	36.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SELO	83642	genome.wustl.edu	37	22	50644916	50644916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031454.1	+1	reviewed	p.T242M	0.838	68	0%	136	13.2%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_UPF0061
TUBGCP6	85378	genome.wustl.edu	37	22	50656429	50656429	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020461.3	-1	reviewed	p.P1762	0.983	17	0%	46	41.3%	-	-	-	-	-	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50667871	50667871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020461.3	-1	reviewed	p.V418I	0.006	21	0%	60	30%	-	-	benign(0.123)	tolerated(0.06)	neutral(0.333)	HMMPfam_Spc97_Spc98
MAPK12	6300	genome.wustl.edu	37	22	50694051	50694051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002969.3	-1	reviewed	p.S255N	0.998	53	0%	116	32.8%	-	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAPK11	5600	genome.wustl.edu	37	22	50703850	50703850	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002751.5	-1	reviewed	p.H305	0.867	24	0%	60	40%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM116B	414918	genome.wustl.edu	37	22	50751926	50751926	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001794.3	-1	validated	p.E432	1.000	29	0%	47	44.7%	-	-	-	-	-	HMMPfam_DUF1630
FAM116B	414918	genome.wustl.edu	37	22	50757499	50757499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000433760	-1	known	p.R9I	0.000	17	0%	34	50%	-	-	unknown(0)	-	-	NULL
PPP6R2	9701	genome.wustl.edu	37	22	50877138	50877138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014678.3	+1	validated	p.A665V	0.001	28	0%	109	33%	-	-	benign(0.022)	tolerated(0.14)	neutral(0.251)	NULL
SBF1	6305	genome.wustl.edu	37	22	50897721	50897721	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002972.2	-1	validated	p.T1263	0.454	16	0%	21	38.1%	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
SBF1	6305	genome.wustl.edu	37	22	50900237	50900237	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002972.2	-1	validated	p.P877	0.954	13	0%	28	39.3%	-	-	-	-	-	NULL
MIOX	55586	genome.wustl.edu	37	22	50928213	50928213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000395732	+1	known	p.G258R	0.044	8	0.000	28	0.214	-	-	unknown(0)	deleterious(0)	-	NULL
LMF2	91289	genome.wustl.edu	37	22	50942056	50942056	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000487499	-1	known	p.A636V	0.998	31	0%	71	32.4%	-	-	-	-	-	NULL
LMF2	91289	genome.wustl.edu	37	22	50942261	50942261	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000487499	-1	known	p.A604T	0.007	27	0%	56	21.4%	-	-	-	-	-	NULL
LMF2	91289	genome.wustl.edu	37	22	50942854	50942854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033200.2	-1	validated	p.A520T	0.000	29	0%	62	11.3%	-	-	benign(0.032)	tolerated(0.65)	neutral(0.005)	HMMPfam_DUF1222
LMF2	91289	genome.wustl.edu	37	22	50943044	50943044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033200.2	-1	validated	p.T492M	0.992	13	0%	33	42.4%	-	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_DUF1222
LMF2	91289	genome.wustl.edu	37	22	50944527	50944527	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000487499	-1	known	p.R244C	0.998	20	0%	44	36.4%	-	-	-	-	-	HMMPfam_DUF1222
CPT1B	1375	genome.wustl.edu	37	22	51010461	51010461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145135.1	-1	reviewed	p.R517W	1.000	57	0%	132	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CPT1B	1375	genome.wustl.edu	37	22	51011470	51011470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145135.1	-1	reviewed	p.R396C	0.998	28	0%	56	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ARSA	410	genome.wustl.edu	37	22	51064490	51064490	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000487.4	-1	reviewed	p.G325	0.942	8	0.000	31	0.452	-	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SHANK3	85358	genome.wustl.edu	37	22	51153475	51153475	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080420.1	+1	reviewed	p.S771	0.980	14	0%	61	36.1%	-	-	-	-	-	NULL
RABL2B	11158	genome.wustl.edu	37	22	51207533	51207533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001130923.1	-1	reviewed	p.R185Q	0.993	470	0%	340	22.6%	-	-	benign(0.04)	tolerated(0.3)	neutral(0.031)	HMMSmart_SM00176,HMMSmart_SM00174,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	88432	88432	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000400846	+1	known	p.D64E	NULL	386	0%	370	24.3%	-	-	probably_damaging(0.993)	tolerated(0.2)	deleterious(0.499)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ENSG00000215608	0	genome.wustl.edu	37	GL000212.1	126549	126549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000400673	+1	known	p.R82C	NULL	35	0%	52	28.8%	-	-	-	-	-	NULL
PLCXD1	55344	genome.wustl.edu	37	X	215849	215849	+	Silent	SNP	G	G	A	rs188377722	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018390.3	+1	reviewed	p.T273	0.278	89	0%	147	38.8%	-	-	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
CRLF2	64109	genome.wustl.edu	37	X	1321382	1321382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000381567	-1	known	p.V125M	0.000	179	0%	241	13.3%	-	-	possibly_damaging(0.911)	deleterious(0.05)	deleterious(0.708)	superfamily_Fibronectin type III
CSF2RA	1438	genome.wustl.edu	37	X	1407705	1407705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006140.4	+1	reviewed	p.L133V	0.255	172	0%	209	26.3%	-	-	possibly_damaging(0.643)	tolerated(0.13)	deleterious(0.478)	superfamily_Fibronectin type III
SLC25A6	293	genome.wustl.edu	37	X	1506263	1506263	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001636.3	-1	reviewed	p.I216	0.959	45	0%	93	37.6%	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
P2RY8	286530	genome.wustl.edu	37	X	1585351	1585351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178129.4	-1	reviewed	p.A34V	0.991	31	0%	51	23.5%	-	-	probably_damaging(0.953)	tolerated(0.22)	neutral(0.439)	superfamily_SSF81321
AKAP17A	8227	genome.wustl.edu	37	X	1718351	1718351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000381261	+1	known	p.R393H	0.114	22	0%	47	31.9%	-	-	unknown(0)	deleterious(0.03)	-	NULL
ARSE	415	genome.wustl.edu	37	X	2853012	2853012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000047.2	-1	reviewed	p.A544V	0.996	151	0%	194	47.9%	-	-	benign(0.299)	deleterious(0)	deleterious(0.537)	superfamily_Alkaline_phosphatase_core
ARSE	415	genome.wustl.edu	37	X	2876421	2876421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000047.2	-1	reviewed	p.P27S	0.006	92	0%	76	44.7%	-	-	probably_damaging(0.997)	tolerated(0.52)	deleterious(0.475)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3229491	3229491	+	Silent	SNP	G	G	A	rs191500002	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.N2251	0.001	95	0%	140	43.6%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3235154	3235154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.A2190T	0.999	6	0.000	20	0.600	-	-	benign(0.115)	tolerated(0.18)	neutral(0.065)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3235467	3235467	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.D2085	0.991	29	0%	68	39.7%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3238980	3238980	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.G1582	0.000	342	0%	329	36.2%	-	-	-	-	-	NULL
MXRA5	25878	genome.wustl.edu	37	X	3242275	3242275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.A484V	0.000	48	0%	58	37.9%	-	-	possibly_damaging(0.668)	tolerated(0.13)	deleterious(0.489)	superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3261805	3261805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015419.3	-1	reviewed	p.A24T	0.000	22	0%	58	41.4%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
PRKX	5613	genome.wustl.edu	37	X	3559907	3559907	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005044.4	-1	reviewed	p.F235	1.000	94	0%	63	42.9%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NLGN4X	57502	genome.wustl.edu	37	X	5810863	5810863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020742.2	-1	reviewed	p.V816L	1.000	344	0%	182	30.8%	-	-	possibly_damaging(0.89)	deleterious(0)	deleterious(0.794)	NULL
VCX3A	51481	genome.wustl.edu	37	X	6452044	6452044	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016379.3	-1	reviewed	p.H101	0.015	359	0.3%	419	13.1%	-	-	-	-	-	NULL
VCX	26609	genome.wustl.edu	37	X	7811572	7811572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013452.2	+1	reviewed	p.R46C	0.030	655	0.2%	711	10.5%	-	-	unknown(0)	deleterious(0)	-	NULL
VCX2	51480	genome.wustl.edu	37	X	8138357	8138357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016378.2	-1	reviewed	p.R46C	0.001	349	0%	415	15.7%	-	-	unknown(0)	deleterious(0)	-	NULL
VCX3B	425054	genome.wustl.edu	37	X	8433971	8433971	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001888.2	+1	reviewed	p.S96	0.856	311	0.3%	426	16%	-	-	-	-	-	NULL
FAM9A	171482	genome.wustl.edu	37	X	8764391	8764391	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_174951.3	-1	validated	p.E136*	0.003	465	0%	541	32.2%	-	-	-	-	-	NULL
WWC3	55841	genome.wustl.edu	37	X	10085309	10085309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015691.3	+1	validated	p.D404N	1.000	22	0%	43	39.5%	-	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
CLCN4	1183	genome.wustl.edu	37	X	10180579	10180579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001830.3	+1	reviewed	p.E488K	1.000	43	0%	47	42.6%	-	-	possibly_damaging(0.544)	deleterious(0.05)	deleterious(0.530)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCN4	1183	genome.wustl.edu	37	X	10188851	10188851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001830.3	+1	reviewed	p.P709L	1.000	75	0%	51	47.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
ARHGAP6	395	genome.wustl.edu	37	X	11196325	11196325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013427.2	-1	reviewed	p.I508M	1.000	131	0%	77	14.3%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
TLR8	51311	genome.wustl.edu	37	X	12928544	12928544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000311912	+1	known	p.G14R	0.000	119	0%	56	35.7%	-	-	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
TLR8	51311	genome.wustl.edu	37	X	12937921	12937921	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138636.4	+1	reviewed	p.S254	0.547	82	0%	30	30%	-	-	-	-	-	superfamily_SSF52047
TLR8	51311	genome.wustl.edu	37	X	12937927	12937927	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138636.4	+1	reviewed	p.N256	1.000	89	0%	28	53.6%	-	-	-	-	-	superfamily_SSF52047
TLR8	51311	genome.wustl.edu	37	X	12939989	12939989	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138636.4	+1	reviewed	p.F944V	1.000	88	0%	28	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,superfamily_TIR
TCEANC	170082	genome.wustl.edu	37	X	13681116	13681116	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152634.2	+1	validated	p.S193	0.000	65	0%	36	19.4%	-	-	-	-	-	superfamily_Elongation factor TFIIS domain 2
TCEANC	170082	genome.wustl.edu	37	X	13681615	13681615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152634.2	+1	validated	p.M360L	0.994	151	0%	75	42.7%	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	superfamily_Zinc beta-ribbon
OFD1	8481	genome.wustl.edu	37	X	13764499	13764499	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003611.2	+1	reviewed	p.F193	0.271	158	0%	62	43.5%	-	-	-	-	-	NULL
GLRA2	2742	genome.wustl.edu	37	X	14748581	14748581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001118885.1	+1	reviewed	p.R445W	1.000	119	0%	26	30.8%	-	-	benign(0.029)	deleterious(0.02)	neutral(0.385)	superfamily_Neurotransmitter-gated ion-channel transmembrane pore
FANCB	2187	genome.wustl.edu	37	X	14882704	14882704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018113.1	-1	reviewed	p.A310D	0.998	90	0%	40	10%	-	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
PIGA	5277	genome.wustl.edu	37	X	15349811	15349811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002641.2	-1	reviewed	p.R81H	1.000	195	0%	158	41.1%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_PIGA,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
PIR	8544	genome.wustl.edu	37	X	15477833	15477833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001018109.1	-1	reviewed	p.A74T	1.000	119	0%	63	39.7%	-	-	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_Pirin,superfamily_RmlC_like_cupin
ACE2	59272	genome.wustl.edu	37	X	15603680	15603680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021804.2	-1	reviewed	p.R273K	1.000	169	0%	37	35.1%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
TMEM27	57393	genome.wustl.edu	37	X	15657808	15657808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020665.4	-1	reviewed	p.S130Y	0.647	225	0%	185	30.8%	-	-	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
CTPS2	56474	genome.wustl.edu	37	X	16685815	16685815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144002.1	-1	reviewed	p.E408*	1.000	158	0%	84	31%	-	-	-	-	-	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
CTPS2	56474	genome.wustl.edu	37	X	16696535	16696535	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144002.1	-1	reviewed	p.T348	0.000	213	0%	142	32.4%	-	-	-	-	-	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
CTPS2	56474	genome.wustl.edu	37	X	16711512	16711512	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001144002.1	-1	reviewed	p.H179	0.941	152	0%	112	20.5%	-	-	-	-	-	HMMPfam_CTP_synth_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TXLNG	55787	genome.wustl.edu	37	X	16850791	16850791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018360.2	+1	reviewed	p.V304M	0.988	145	0.7%	94	33%	-	-	benign(0.212)	tolerated(0.2)	neutral(0.070)	HMMPfam_Taxilin
TXLNG	55787	genome.wustl.edu	37	X	16859706	16859706	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018360.2	+1	reviewed	p.A468	0.001	78	0%	36	50%	-	-	-	-	-	NULL
NHS	4810	genome.wustl.edu	37	X	17750534	17750534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198270.2	+1	reviewed	p.N1615H	1.000	58	0%	76	31.6%	-	-	possibly_damaging(0.945)	deleterious(0.04)	deleterious(0.738)	NULL
RS1	6247	genome.wustl.edu	37	X	18665353	18665353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000330.3	-1	reviewed	p.S95L	1.000	112	0%	140	12.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
PPEF1	5475	genome.wustl.edu	37	X	18797190	18797190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006240.2	+1	reviewed	p.K207N	0.996	150	0%	132	40.9%	-	-	benign(0.02)	tolerated(0.08)	neutral(0.301)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PHKA2	5256	genome.wustl.edu	37	X	18911622	18911622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000292.2	-1	reviewed	p.S1230L	0.995	112	0%	139	48.9%	-	-	benign(0.338)	tolerated(0.2)	neutral(0.155)	HMMPfam_PHK_AB
ENSG00000250774	0	genome.wustl.edu	37	X	18918766	18918766	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000502927	+1	known	NULL	0.000	193	0%	191	33.5%	-	-	-	-	-	-
PHKA2	5256	genome.wustl.edu	37	X	18958138	18958138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000292.2	-1	reviewed	p.R298Q	1.000	106	0%	71	35.2%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
PHKA2	5256	genome.wustl.edu	37	X	19002004	19002004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000292.2	-1	reviewed	p.R16Q	1.000	29	0%	63	34.9%	-	-	benign(0.355)	tolerated(0.27)	neutral(0.146)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
MAP3K15	389840	genome.wustl.edu	37	X	19410119	19410119	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001671.3	-1	validated	e9+1	1.000	68	0%	39	28.2%	-	-	-	-	-	-
MAP3K15	389840	genome.wustl.edu	37	X	19410130	19410130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001671.3	-1	validated	p.E282D	0.956	71	0%	41	31.7%	-	-	probably_damaging(0.978)	tolerated(0.12)	deleterious(0.681)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP3K15	389840	genome.wustl.edu	37	X	19416387	19416387	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001671.3	-1	validated	p.Q150*	1.000	133	0%	56	44.6%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SH3KBP1	30011	genome.wustl.edu	37	X	19560255	19560255	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031892.2	-1	reviewed	p.G560	0.000	41	0%	64	31.2%	-	-	-	-	-	NULL
CXorf23	256643	genome.wustl.edu	37	X	19953995	19953995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198279.3	-1	validated	p.D599Y	0.053	447	0%	190	32.6%	-	-	possibly_damaging(0.597)	deleterious(0)	deleterious(0.651)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19984654	19984654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198279.3	-1	validated	p.D52G	0.798	153	0%	68	33.8%	-	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20043939	20043939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152780.3	-1	validated	p.S339N	1.000	237	0%	115	31.3%	-	-	unknown(0)	tolerated(0.39)	-	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20185779	20185779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004586.2	-1	reviewed	p.F510L	1.000	165	0%	71	35.2%	-	-	benign(0.031)	tolerated(0.65)	neutral(0.005)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA3	6197	genome.wustl.edu	37	X	20204433	20204433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004586.2	-1	reviewed	p.T276A	1.000	244	0%	74	25.7%	-	-	benign(0.375)	deleterious(0.02)	deleterious(0.502)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA3	6197	genome.wustl.edu	37	X	20222222	20222222	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004586.2	-1	reviewed	e4-1	1.000	88	0%	27	33.3%	-	-	-	-	-	-
MBTPS2	51360	genome.wustl.edu	37	X	21887760	21887760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015884.3	+1	reviewed	p.A312T	0.999	98	0%	52	30.8%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_Peptidase_M50
MBTPS2	51360	genome.wustl.edu	37	X	21896201	21896201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015884.3	+1	reviewed	p.H338Y	1.000	99	0%	26	23.1%	-	-	benign(0.133)	tolerated(0.71)	neutral(0.012)	HMMPfam_Peptidase_M50
SMS	6611	genome.wustl.edu	37	X	21990655	21990655	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004595.2	+1	reviewed	p.E99*	1.000	178	0%	91	29.7%	-	-	-	-	-	NULL
PHEX	5251	genome.wustl.edu	37	X	22237175	22237175	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000444.4	+1	reviewed	p.G575*	1.000	333	0%	107	35.5%	-	-	-	-	-	HMMPfam_Peptidase_M13,superfamily_SSF55486
PTCHD1	139411	genome.wustl.edu	37	X	23353269	23353269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173495.2	+1	validated	p.Y93H	1.000	39	0%	108	38%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched
PTCHD1	139411	genome.wustl.edu	37	X	23410762	23410762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173495.2	+1	validated	p.S376Y	1.000	115	0%	50	38%	-	-	benign(0.081)	-	-	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
PTCHD1	139411	genome.wustl.edu	37	X	23411051	23411051	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173495.2	+1	validated	p.G472	0.013	73	0%	38	34.2%	-	-	-	-	-	HMMPfam_Patched
APOO	79135	genome.wustl.edu	37	X	23925876	23925876	+	RNA	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_026545.2	-1	reviewed	NULL	0.000	6	0.000	18	0.389	-	-	-	-	-	-
CXorf58	254158	genome.wustl.edu	37	X	23953417	23953417	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152761.2	+1	validated	p.D220	1.000	80	0%	51	27.5%	-	-	-	-	-	NULL
KLHL15	80311	genome.wustl.edu	37	X	24024641	24024641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_030624.2	-1	reviewed	p.R57I	1.000	120	0%	69	29%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
EIF2S3	1968	genome.wustl.edu	37	X	24082445	24082445	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001415.3	+1	reviewed	p.R255	0.989	130	0%	61	41%	-	-	-	-	-	superfamily_Translation proteins
ZFX	7543	genome.wustl.edu	37	X	24228535	24228535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003410.3	+1	reviewed	p.A487V	0.999	242	0%	141	26.2%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_C2H2 and C2HC zinc fingers
FAM48B2	170067	genome.wustl.edu	37	X	24330783	24330783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136233.1	-1	provisional	p.A217V	0.963	186	0%	250	34%	-	-	-	-	-	NULL
PCYT1B	9468	genome.wustl.edu	37	X	24597473	24597473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004845.4	-1	reviewed	p.R223I	1.000	238	0%	97	34%	-	-	-	-	-	superfamily_Nucleotidylyl transferase
PCYT1B	9468	genome.wustl.edu	37	X	24637154	24637154	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004845.4	-1	reviewed	p.C55	1.000	261	0%	103	20.4%	-	-	-	-	-	NULL
POLA1	5422	genome.wustl.edu	37	X	24760155	24760155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016937.3	+1	reviewed	p.E789K	1.000	77	0%	69	42%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,superfamily_SSF56672
POLA1	5422	genome.wustl.edu	37	X	24830965	24830965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016937.3	+1	reviewed	p.A1088D	1.000	84	0%	33	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B,superfamily_SSF56672
ARX	170302	genome.wustl.edu	37	X	25022796	25022796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_139058.2	-1	reviewed	p.E560D	1.000	8	0.000	25	0.200	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
MAGEB6	158809	genome.wustl.edu	37	X	26212350	26212350	+	Silent	SNP	C	C	T	rs183964860	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173523.2	+1	reviewed	p.N129	0.000	77	0%	51	15.7%	-	-	-	-	-	NULL
DCAF8L2	347442	genome.wustl.edu	37	X	27765258	27765258	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136533.1	+1	provisional	p.I82	0.000	118	0%	77	33.8%	-	-	-	-	-	NULL
LOC392435	392435	genome.wustl.edu	37	X	27850384	27850384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343800.1	+1	model	p.A66T	0.000	11	0.000	8	0.750	-	-	-	-	-	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29973335	29973335	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014271.3	+1	reviewed	p.R497*	1.000	108	0%	44	45.5%	-	-	-	-	-	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
MAGEB2	4113	genome.wustl.edu	37	X	30237495	30237495	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002364.4	+1	reviewed	p.S266	0.051	157	0%	83	28.9%	-	-	-	-	-	HMMPfam_MAGE
MAGEB4	4115	genome.wustl.edu	37	X	30260590	30260590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002367.3	+1	reviewed	p.T113M	0.000	75	0%	70	38.6%	-	-	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30260999	30260999	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002367.3	+1	reviewed	p.L249	0.028	146	0%	126	10.3%	-	-	-	-	-	HMMPfam_MAGE
CXorf21	80231	genome.wustl.edu	37	X	30578413	30578413	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_025159.2	-1	validated	p.C20	0.001	65	0%	28	21.4%	-	-	-	-	-	NULL
TAB3	257397	genome.wustl.edu	37	X	30872637	30872637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152787.3	-1	reviewed	p.R382K	1.000	442	0%	194	39.2%	-	-	possibly_damaging(0.806)	tolerated(0.59)	neutral(0.308)	NULL
FTHL17	53940	genome.wustl.edu	37	X	31089897	31089897	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031894.2	-1	reviewed	p.R58	0.000	70	0%	79	34.2%	-	-	-	-	-	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
DMD	1756	genome.wustl.edu	37	X	31196878	31196878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004006.2	-1	reviewed	p.K3377N	1.000	144	0%	38	28.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DMD	1756	genome.wustl.edu	37	X	31462697	31462697	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000465285	-1	known	p.Q724K	0.998	150	0%	31	32.3%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31854892	31854892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004006.2	-1	reviewed	p.E2381D	0.999	324	0%	148	35.1%	-	-	benign(0.009)	tolerated(0.69)	neutral(0.003)	superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32472913	32472913	+	Missense_Mutation	SNP	C	C	T	rs128625226		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004006.2	-1	reviewed	p.E1157K	1.000	199	0.5%	43	37.2%	-	-	benign(0.046)	tolerated(0.15)	neutral(0.243)	HMMPfam_Spectrin
DMD	1756	genome.wustl.edu	37	X	32563387	32563387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004006.2	-1	reviewed	p.T686I	1.000	328	0%	60	25%	-	-	probably_damaging(0.999)	tolerated(0.46)	deleterious(0.502)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34150213	34150213	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_203408.3	-1	validated	p.G61	0.008	120	0%	128	10.9%	-	-	-	-	-	NULL
MAGEB16	139604	genome.wustl.edu	37	X	35820658	35820658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099921.1	+1	provisional	p.Q115H	0.001	112	0%	61	42.6%	-	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35993954	35993954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152632.3	+1	validated	p.Q879H	0.008	150	0.7%	45	31.1%	-	-	probably_damaging(0.957)	tolerated(0.18)	neutral(0.457)	NULL
LANCL3	347404	genome.wustl.edu	37	X	37518857	37518857	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198511.2	+1	validated	p.L280	0.022	64	0%	15	40%	-	-	-	-	-	HMMPfam_LANC_like,superfamily_Glyco_trans_6hp
LANCL3	347404	genome.wustl.edu	37	X	37526656	37526656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198511.2	+1	validated	p.I339M	0.991	90	0%	21	38.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LANC_like,superfamily_Glyco_trans_6hp
XK	7504	genome.wustl.edu	37	X	37553759	37553759	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021083.2	+1	reviewed	p.L156	1.000	61	0%	65	41.5%	-	-	-	-	-	HMMPfam_XK-related
XK	7504	genome.wustl.edu	37	X	37587549	37587549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021083.2	+1	reviewed	p.R390M	0.000	105	0%	31	35.5%	-	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
CYBB	1536	genome.wustl.edu	37	X	37664352	37664352	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000397.3	+1	reviewed	p.P415	0.995	268	0%	53	47.2%	-	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SRPX	8406	genome.wustl.edu	37	X	38020192	38020192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006307.4	-1	validated	p.V257L	1.000	120	0%	56	19.6%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_HYR
RPGR	6103	genome.wustl.edu	37	X	38150692	38150692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001034853.1	-1	reviewed	p.S487Y	0.000	181	0%	61	19.7%	-	-	possibly_damaging(0.731)	deleterious(0.01)	deleterious(0.673)	NULL
OTC	5009	genome.wustl.edu	37	X	38260608	38260608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000531.5	+1	reviewed	p.S156Y	1.000	240	0%	96	33.3%	-	-	benign(0.003)	deleterious(0)	neutral(0.445)	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N
BCOR	54880	genome.wustl.edu	37	X	39921437	39921437	+	Silent	SNP	G	G	A	rs189731022	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427012	-1	known	p.T156M	0.043	78	0%	104	30.8%	-	-	-	-	-	superfamily_Ankyrin repeat
BCOR	54880	genome.wustl.edu	37	X	39922186	39922186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.K1329R	1.000	234	0%	293	33.4%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
BCOR	54880	genome.wustl.edu	37	X	39932845	39932845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.R585M	0.840	117	0%	145	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCOR	54880	genome.wustl.edu	37	X	39933378	39933378	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.P407	0.000	46	0%	77	33.8%	-	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39934214	39934214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.P129S	0.035	110	0%	172	25%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
BCOR	54880	genome.wustl.edu	37	X	39934313	39934313	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.L96	1.000	38	0%	76	11.8%	-	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39934335	39934335	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001123385.1	-1	reviewed	p.I88	0.985	24	0%	60	48.3%	-	-	-	-	-	NULL
ATP6AP2	10159	genome.wustl.edu	37	X	40456836	40456836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005765.2	+1	reviewed	p.R152C	0.965	68	0%	42	52.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATP6AP2	10159	genome.wustl.edu	37	X	40456897	40456897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005765.2	+1	reviewed	p.S172Y	1.000	104	0%	38	23.7%	-	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
USP9X	8239	genome.wustl.edu	37	X	41027380	41027380	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039590.2	+1	reviewed	p.R849*	1.000	312	0%	114	31.6%	-	-	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41029422	41029422	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039590.2	+1	reviewed	p.G937	0.610	205	0%	68	32.4%	-	-	-	-	-	NULL
DDX3X	1654	genome.wustl.edu	37	X	41201790	41201790	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001356.3	+1	reviewed	p.S109	1.000	234	0%	171	39.2%	-	-	-	-	-	NULL
DDX3X	1654	genome.wustl.edu	37	X	41203540	41203540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001356.3	+1	reviewed	p.D305N	1.000	427	0.2%	311	35.7%	-	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAOA	4128	genome.wustl.edu	37	X	43599940	43599940	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000240.2	+1	reviewed	p.I373	1.000	178	0.6%	73	38.4%	-	-	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
MAOA	4128	genome.wustl.edu	37	X	43603370	43603370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000240.2	+1	reviewed	p.L463	0.013	165	0%	63	41.3%	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
EFHC2	80258	genome.wustl.edu	37	X	44109508	44109508	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000333807	-1	known	p.E264*	0.995	111	0%	45	37.8%	-	-	-	-	-	HMMSmart_SM00676,HMMPfam_DUF1126
DUSP21	63904	genome.wustl.edu	37	X	44703749	44703749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022076.3	+1	reviewed	p.Y124C	1.000	75	0%	59	39%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
KDM6A	7403	genome.wustl.edu	37	X	44949994	44949994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021140.2	+1	reviewed	p.R1255W	1.000	260	0%	104	36.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_JmjC
CXorf36	79742	genome.wustl.edu	37	X	45011128	45011128	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176819.3	-1	validated	p.S357	1.000	52	0%	38	34.2%	-	-	-	-	-	NULL
CXorf36	79742	genome.wustl.edu	37	X	45059986	45059986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_176819.3	-1	validated	p.S29Y	0.000	98	0%	84	39.3%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RP2	6102	genome.wustl.edu	37	X	46713138	46713138	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006915.2	+1	reviewed	p.C110	0.925	111	0%	62	37.1%	-	-	-	-	-	HMMSmart_CARP,HMMPfam_TBCC
PHF16	9767	genome.wustl.edu	37	X	46857618	46857618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077445.1	+1	reviewed	p.E75K	1.000	137	0%	74	25.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPL1
NDUFB11	54539	genome.wustl.edu	37	X	47001752	47001752	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019056.5	-1	validated	p.F152	0.966	130	0%	189	38.1%	-	-	-	-	-	HMMPfam_ESSS
RBM10	8241	genome.wustl.edu	37	X	47006896	47006896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005676.3	+1	reviewed	p.R6C	1.000	81	0%	109	30.3%	-	-	unknown(0)	deleterious(0)	-	NULL
UBA1	7317	genome.wustl.edu	37	X	47062997	47062997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003334.3	+1	reviewed	p.G493C	1.000	208	0%	326	39.3%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_ThiF,superfamily_MoeB
UBA1	7317	genome.wustl.edu	37	X	47072254	47072254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003334.3	+1	reviewed	p.R880W	1.000	129	0.8%	233	10.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UBACT,superfamily_MoeB
UBA1	7317	genome.wustl.edu	37	X	47074220	47074220	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003334.3	+1	reviewed	p.S1023	0.993	78	0%	118	39.8%	-	-	-	-	-	HMMPfam_UBA_e1_C
USP11	8237	genome.wustl.edu	37	X	47104771	47104771	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004651.3	+1	reviewed	p.G763	1.000	52	0%	82	39%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF41	7592	genome.wustl.edu	37	X	47307603	47307603	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007130.2	-1	reviewed	p.P522	0.231	268	0%	163	36.8%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ARAF	369	genome.wustl.edu	37	X	47429358	47429358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001654.3	+1	reviewed	p.G496R	0.999	46	0%	66	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
SYN1	6853	genome.wustl.edu	37	X	47434112	47434112	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006950.3	-1	reviewed	p.P456	0.123	21	0%	66	45.5%	-	-	-	-	-	NULL
ELK1	2002	genome.wustl.edu	37	X	47500663	47500663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001114123.1	-1	reviewed	p.L60F	1.000	124	0%	171	32.2%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,superfamily_""Winged helix"" DNA-binding domain"
ZNF182	7569	genome.wustl.edu	37	X	47836836	47836836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006962.1	-1	reviewed	p.R217Q	0.000	104	0%	53	34%	-	-	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
SPACA5	389852	genome.wustl.edu	37	X	47867818	47867818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205856.2	+1	validated	p.V64M	0.008	289	0%	338	14.8%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
SPACA5	389852	genome.wustl.edu	37	X	47867870	47867870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_205856.2	+1	validated	p.S81Y	0.384	311	0%	320	17.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
ZNF630	57232	genome.wustl.edu	37	X	47918559	47918559	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037735.2	-1	validated	p.T424	0.018	146	0.7%	48	12.5%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47918967	47918967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001037735.2	-1	validated	p.E288D	1.000	166	0%	68	33.8%	-	-	benign(0.005)	tolerated(0.09)	neutral(0.296)	superfamily_SSF57667
SSX6	280657	genome.wustl.edu	37	X	47969938	47969938	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000304314	+1	known	p.S88	0.001	784	0%	739	38.2%	-	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SSX4B	548313	genome.wustl.edu	37	X	48270259	48270259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001034832.2	-1	reviewed	p.M40V	0.000	758	0%	491	16.9%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SLC38A5	92745	genome.wustl.edu	37	X	48319046	48319046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033518.2	-1	validated	p.V353M	1.000	24	0%	29	31%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Aa_trans
SLC38A5	92745	genome.wustl.edu	37	X	48325447	48325447	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033518.2	-1	validated	p.S49	0.104	58	0%	89	33.7%	-	-	-	-	-	HMMPfam_Aa_trans
SLC38A5	92745	genome.wustl.edu	37	X	48325451	48325451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033518.2	-1	validated	p.T48I	1.000	57	0%	84	39.3%	-	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_Aa_trans
TBC1D25	4943	genome.wustl.edu	37	X	48418262	48418262	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002536.2	+1	validated	p.A322	0.141	25	0%	29	24.1%	-	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
LOC729275	729275	genome.wustl.edu	37	X	48433765	48433765	+	RNA	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XR_078586.1	-1	model	NULL	0.000	41	0%	65	40%	-	-	-	-	-	-
WDR13	64743	genome.wustl.edu	37	X	48458724	48458724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017883.4	+1	reviewed	p.A181T	1.000	23	0%	38	26.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LOC100289403	100289403	genome.wustl.edu	37	X	48460405	48460405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343810.1	-1	model	p.P53S	0.000	47	0%	98	39.8%	-	-	-	-	-	NULL
SUV39H1	6839	genome.wustl.edu	37	X	48564691	48564691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003173.2	+1	reviewed	p.Q288H	1.000	33	0%	68	30.9%	-	-	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
GATA1	2623	genome.wustl.edu	37	X	48649615	48649615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002049.3	+1	reviewed	p.F33L	0.993	12	0%	17	35.3%	-	-	benign(0.24)	tolerated(0.62)	neutral(0.028)	NULL
HDAC6	10013	genome.wustl.edu	37	X	48681204	48681204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006044.2	+1	reviewed	p.K838Q	0.947	46	0%	117	33.3%	-	-	benign(0.033)	tolerated(0.3)	neutral(0.030)	NULL
GRIPAP1	56850	genome.wustl.edu	37	X	48846063	48846063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020137.3	-1	reviewed	p.R277Q	0.430	158	0%	176	33%	-	-	possibly_damaging(0.482)	tolerated(0.35)	neutral(0.180)	NULL
TFE3	7030	genome.wustl.edu	37	X	48888962	48888962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006521.4	-1	reviewed	p.R412W	1.000	74	0%	121	19%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HLH_basic
TFE3	7030	genome.wustl.edu	37	X	48891006	48891006	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006521.4	-1	reviewed	p.G370	0.994	118	0%	152	12.5%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
CCDC120	90060	genome.wustl.edu	37	X	48924828	48924828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033626.2	+1	reviewed	p.S358I	1.000	7	0.000	29	0.483	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49033356	49033356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006150.3	-1	reviewed	p.A384V	0.003	35	0%	71	40.8%	-	-	benign(0.019)	deleterious(0.02)	neutral(0.384)	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49034529	49034529	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006150.3	-1	reviewed	e7-1	1.000	38	0%	67	38.8%	-	-	-	-	-	-
SYP	6855	genome.wustl.edu	37	X	49047973	49047973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003179.2	-1	reviewed	p.G288D	1.000	13	0%	23	39.1%	-	-	unknown(0)	deleterious(0.04)	-	NULL
SYP	6855	genome.wustl.edu	37	X	49050734	49050734	+	Silent	SNP	G	G	A	rs185819998	by1000genomes	TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003179.2	-1	reviewed	p.A104	0.076	146	0.7%	212	31.6%	-	-	-	-	-	HMMPfam_MARVEL
CACNA1F	778	genome.wustl.edu	37	X	49079225	49079225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005183.2	-1	reviewed	p.G731*	1.000	214	0%	234	12%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49088147	49088147	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005183.2	-1	reviewed	p.E90*	1.000	59	0%	126	37.3%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
PPP1R3F	89801	genome.wustl.edu	37	X	49142427	49142427	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033215.4	+1	reviewed	p.G425	0.969	32	0%	49	30.6%	-	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052075	50052075	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033031.2	+1	reviewed	p.P302	0.015	71	0%	22	18.2%	-	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052195	50052195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033031.2	+1	reviewed	p.E342D	0.000	107	0%	30	16.7%	-	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50381209	50381209	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020717.3	-1	reviewed	p.A123	1.000	75	0%	59	15.3%	-	-	-	-	-	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487126	51487126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018094.4	+1	reviewed	p.P135H	0.996	83	0%	104	38.5%	-	-	benign(0.355)	deleterious(0.01)	deleterious(0.518)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487530	51487530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018094.4	+1	reviewed	p.E270K	1.000	251	0%	360	39.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_SSF52540
MAGED1	9500	genome.wustl.edu	37	X	51637766	51637766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005333.1	+1	reviewed	p.P30L	0.078	86	0%	118	28.8%	-	-	unknown(0)	deleterious(0)	-	NULL
MAGED1	9500	genome.wustl.edu	37	X	51639858	51639858	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005333.1	+1	reviewed	p.P425	0.651	42	0%	38	52.6%	-	-	-	-	-	NULL
MAGED1	9500	genome.wustl.edu	37	X	51640086	51640086	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001005333.1	+1	reviewed	p.S501	0.942	50	0%	46	17.4%	-	-	-	-	-	NULL
KDM5C	8242	genome.wustl.edu	37	X	53247533	53247533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004187.3	-1	reviewed	p.F92L	1.000	225	0%	186	36.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
KDM5C	8242	genome.wustl.edu	37	X	53254008	53254008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004187.3	-1	reviewed	p.A22T	1.000	39	0%	73	49.3%	-	-	benign(0.137)	deleterious(0.01)	neutral(0.417)	HMMPfam_JmjN,HMMSmart_SM00545
IQSEC2	23096	genome.wustl.edu	37	X	53263916	53263916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001111125.1	-1	validated	p.P1318S	0.933	16	0%	40	42.5%	-	-	unknown(0)	deleterious(0)	-	NULL
IQSEC2	23096	genome.wustl.edu	37	X	53265631	53265631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001111125.1	-1	validated	p.Q1108	1.000	38	0%	79	41.8%	-	-	-	-	-	NULL
SMC1A	8243	genome.wustl.edu	37	X	53432432	53432432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006306.2	-1	reviewed	p.R635H	1.000	56	0%	42	52.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540
SMC1A	8243	genome.wustl.edu	37	X	53438951	53438951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006306.2	-1	reviewed	p.E369D	1.000	200	0%	172	31.4%	-	-	benign(0.017)	tolerated(0.47)	neutral(0.011)	HMMPfam_SMC_N,superfamily_SSF52540
HUWE1	10075	genome.wustl.edu	37	X	53564636	53564636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031407.4	-1	reviewed	p.E4006D	0.993	131	0%	95	32.6%	-	-	unknown(0)	tolerated(0.24)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53576425	53576425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031407.4	-1	reviewed	p.G3177E	1.000	51	0%	40	37.5%	-	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53588799	53588799	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427052	-1	known	p.R1509C	1.000	169	0%	74	44.6%	-	-	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53595723	53595723	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427052	-1	known	p.H1246N	1.000	208	0%	120	43.3%	-	-	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53610792	53610792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031407.4	-1	reviewed	p.G1749V	1.000	94	0%	110	36.4%	-	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53675182	53675182	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031407.4	-1	reviewed	p.Q39	1.000	220	0%	75	33.3%	-	-	-	-	-	NULL
PHF8	23133	genome.wustl.edu	37	X	53965596	53965596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_015107.2	-1	reviewed	p.L1024M	0.999	204	0%	143	35.7%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
PHF8	23133	genome.wustl.edu	37	X	54012214	54012214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000322659	-1	known	p.Y681C	0.000	150	0%	102	38.2%	-	-	benign(0.01)	tolerated(0.1)	neutral(0.287)	NULL
PHF8	23133	genome.wustl.edu	37	X	54028589	54028589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000448003	-1	known	p.A61V	1.000	151	0%	75	42.7%	-	-	-	-	-	NULL
FAM120C	54954	genome.wustl.edu	37	X	54117829	54117829	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017848.4	-1	validated	p.I781	1.000	108	0%	69	40.6%	-	-	-	-	-	NULL
FAM120C	54954	genome.wustl.edu	37	X	54143202	54143202	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017848.4	-1	validated	p.W696*	1.000	107	0%	80	33.8%	-	-	-	-	-	NULL
WNK3	65267	genome.wustl.edu	37	X	54360023	54360023	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020922.4	-1	reviewed	p.Q28	0.000	70	0%	33	45.5%	-	-	-	-	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54570679	54570679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_019067.5	+1	reviewed	p.E184K	1.000	179	0%	123	42.3%	-	-	benign(0.097)	deleterious(0.04)	neutral(0.356)	superfamily_SSF52540
TRO	7216	genome.wustl.edu	37	X	54948708	54948708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.R10K	0.001	263	0%	152	25.7%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
TRO	7216	genome.wustl.edu	37	X	54951445	54951445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.E477*	1.000	172	0%	102	39.2%	-	-	-	-	-	HMMPfam_MAGE
TRO	7216	genome.wustl.edu	37	X	54954151	54954151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.F605L	1.000	87	0%	59	25.4%	-	-	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_MAGE
TRO	7216	genome.wustl.edu	37	X	54956553	54956553	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.A1132	0.000	60	0%	49	28.6%	-	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54956895	54956895	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.S1246	0.000	146	0%	112	37.5%	-	-	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54957093	54957093	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001039705.1	+1	reviewed	p.G1312	0.000	161	0%	118	18.6%	-	-	-	-	-	NULL
ALAS2	212	genome.wustl.edu	37	X	55042158	55042158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000032.4	-1	reviewed	p.E341K	1.000	66	0%	41	39%	-	-	benign(0.17)	tolerated(0.16)	neutral(0.075)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
RRAGB	10325	genome.wustl.edu	37	X	55757952	55757952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016656.3	+1	validated	p.S178Y	1.000	69	0%	29	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLF8	11279	genome.wustl.edu	37	X	56276666	56276666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007250.4	+1	reviewed	p.M4V	0.998	166	0%	64	31.2%	-	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
KLF8	11279	genome.wustl.edu	37	X	56295849	56295849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007250.4	+1	reviewed	p.P229T	1.000	166	0%	49	28.6%	-	-	benign(0.31)	tolerated(0.18)	neutral(0.152)	NULL
KLF8	11279	genome.wustl.edu	37	X	56310823	56310823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007250.4	+1	reviewed	p.R326C	1.000	48	0%	28	28.6%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
UBQLN2	29978	genome.wustl.edu	37	X	56592177	56592177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013444.3	+1	reviewed	p.S624L	0.985	78	0%	79	35.4%	-	-	unknown(0)	deleterious(0)	-	superfamily_UBA-like
ZXDA	7789	genome.wustl.edu	37	X	57934964	57934964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007156.4	-1	reviewed	p.I631V	1.000	147	0%	209	29.7%	-	-	benign(0.056)	deleterious(0)	neutral(0.448)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63412098	63412098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152424.3	-1	reviewed	p.K357E	1.000	259	0%	173	32.9%	-	-	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	HMMPfam_WTX
FAM123B	139285	genome.wustl.edu	37	X	63413148	63413148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152424.3	-1	reviewed	p.E7*	1.000	174	0%	134	11.2%	-	-	-	-	-	NULL
MSN	4478	genome.wustl.edu	37	X	64959669	64959669	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002444.2	+1	reviewed	p.R550*	1.000	66	0%	33	54.5%	-	-	-	-	-	superfamily_Moesin,HMMPfam_ERM
LOC100288788	100288788	genome.wustl.edu	37	X	65176759	65176759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343822.1	-1	model	p.R94C	1.000	154	0%	65	33.8%	-	-	-	-	-	superfamily_RNA-binding domain RBD
HEPH	9843	genome.wustl.edu	37	X	65479981	65479981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138737.3	+1	reviewed	p.P1029T	1.000	99	0%	25	48%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2
AR	367	genome.wustl.edu	37	X	66931246	66931246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000044.2	+1	reviewed	p.R630W	1.000	54	0%	30	46.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
OPHN1	4983	genome.wustl.edu	37	X	67273628	67273628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002547.2	-1	reviewed	p.V728A	0.999	81	0%	31	22.6%	-	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
OPHN1	4983	genome.wustl.edu	37	X	67283780	67283780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002547.2	-1	reviewed	p.P692S	0.973	103	0%	32	31.2%	-	-	benign(0.011)	tolerated(0.36)	neutral(0.021)	NULL
OPHN1	4983	genome.wustl.edu	37	X	67421526	67421526	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002547.2	-1	reviewed	p.Y320	1.000	157	0%	30	36.7%	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
STARD8	9754	genome.wustl.edu	37	X	67943669	67943669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142503.2	+1	reviewed	p.D1001N	0.965	66	0%	99	30.3%	-	-	possibly_damaging(0.854)	tolerated(0.09)	deleterious(0.625)	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
EDA	1896	genome.wustl.edu	37	X	69247830	69247830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001399.4	+1	reviewed	p.P217H	1.000	19	0%	19	26.3%	-	-	unknown(0)	deleterious(0)	-	NULL
AWAT2	158835	genome.wustl.edu	37	X	69269733	69269733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001002254.1	-1	reviewed	p.A17D	0.932	73	0%	56	41.1%	-	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
ARR3	407	genome.wustl.edu	37	X	69489723	69489723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004312.2	+1	validated	p.V24M	1.000	94	0%	101	40.6%	-	-	benign(0.241)	deleterious(0.04)	neutral(0.373)	HMMPfam_Arrestin_N,superfamily_E set domains
KIF4A	24137	genome.wustl.edu	37	X	69561725	69561725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012310.4	+1	reviewed	p.R404C	1.000	144	0%	105	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GDPD2	54857	genome.wustl.edu	37	X	69649346	69649346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017711.3	+1	reviewed	p.R314*	0.064	49	0%	71	40.8%	-	-	-	-	-	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
GDPD2	54857	genome.wustl.edu	37	X	69649468	69649468	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017711.3	+1	reviewed	p.F354	1.000	95	1.1%	136	41.9%	-	-	-	-	-	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
DLG3	1741	genome.wustl.edu	37	X	69673524	69673524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021120.3	+1	reviewed	p.G395S	1.000	136	0%	231	36.8%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DLG3	1741	genome.wustl.edu	37	X	69719835	69719835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021120.3	+1	reviewed	p.A694V	0.998	105	0%	80	42.5%	-	-	possibly_damaging(0.701)	tolerated(0.13)	deleterious(0.504)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
TEX11	56159	genome.wustl.edu	37	X	70080715	70080715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001003811.1	-1	reviewed	p.L121	0.983	172	0%	93	35.5%	-	-	-	-	-	NULL
SNX12	29934	genome.wustl.edu	37	X	70282704	70282704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013346.2	-1	reviewed	p.K87N	1.000	143	0%	185	41.1%	-	-	possibly_damaging(0.716)	tolerated(0.05)	deleterious(0.605)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
FOXO4	4303	genome.wustl.edu	37	X	70321173	70321173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005938.3	+1	reviewed	p.A365T	1.000	23	0%	38	39.5%	-	-	benign(0.002)	tolerated(0.95)	-	NULL
CXorf65	158830	genome.wustl.edu	37	X	70325979	70325979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001025265.2	-1	validated	p.D41N	0.997	225	0%	187	36.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MED12	9968	genome.wustl.edu	37	X	70349541	70349541	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005120.2	+1	reviewed	p.L1235	1.000	92	0%	99	37.4%	-	-	-	-	-	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70467267	70467267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005096.3	-1	reviewed	p.L748I	1.000	41	0%	71	38%	-	-	possibly_damaging(0.791)	tolerated(0.2)	neutral(0.345)	HMMPfam_zf-FCS,HMMSmart_SM00746
NONO	4841	genome.wustl.edu	37	X	70511778	70511778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145408.1	+1	reviewed	p.E102K	1.000	130	0%	98	38.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NONO	4841	genome.wustl.edu	37	X	70516429	70516429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145408.1	+1	reviewed	p.V222G	1.000	159	0%	119	24.4%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00360,HMMPfam_NOPS,superfamily_RNA-binding domain RBD
TAF1	6872	genome.wustl.edu	37	X	70586288	70586288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004606.3	+1	reviewed	p.L42I	1.000	32	0%	51	45.1%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_TBP-binding,superfamily_TAF_II_230
LOC100288033	100288033	genome.wustl.edu	37	X	70887995	70887995	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343818.1	+1	model	p.P114	0.000	36	0%	63	34.9%	-	-	-	-	-	NULL
PIN4	5303	genome.wustl.edu	37	X	71406134	71406134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000373662	+1	known	p.L57I	0.001	21	0%	34	32.4%	-	-	unknown(0)	-	-	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71427393	71427393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017669.2	-1	validated	p.K408N	1.000	96	0%	33	33.3%	-	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_SNF2_N
PHKA1	5255	genome.wustl.edu	37	X	71829490	71829490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002637.3	-1	reviewed	p.E864*	1.000	219	0%	40	35%	-	-	-	-	-	HMMPfam_PHK_AB
NAP1L2	4674	genome.wustl.edu	37	X	72433924	72433924	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021963.2	-1	reviewed	p.D135	0.944	294	0%	184	21.2%	-	-	-	-	-	HMMPfam_NAP
SLC16A2	6567	genome.wustl.edu	37	X	73744267	73744267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006517.3	+1	reviewed	p.L291I	0.993	176	0.6%	113	31.9%	-	-	possibly_damaging(0.729)	tolerated(0.22)	neutral(0.307)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
RLIM	51132	genome.wustl.edu	37	X	73812743	73812743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016120.3	-1	reviewed	p.R136K	1.000	302	0%	90	27.8%	-	-	probably_damaging(0.973)	tolerated(0.1)	deleterious(0.702)	NULL
ABCB7	22	genome.wustl.edu	37	X	74375954	74375954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004299.3	-1	reviewed	p.A52T	0.465	32	0%	41	48.8%	-	-	benign(0.024)	tolerated(0.15)	neutral(0.242)	NULL
ZDHHC15	158866	genome.wustl.edu	37	X	74641728	74641728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_144969.2	-1	reviewed	p.K278N	1.000	157	0%	40	30%	-	-	probably_damaging(0.978)	tolerated(0.32)	neutral(0.445)	NULL
ATRX	546	genome.wustl.edu	37	X	76814239	76814239	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.F2135	0.982	113	0%	43	44.2%	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76874347	76874347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.S1792Y	1.000	127	0%	55	29.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76909646	76909646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.K1420T	1.000	320	0%	138	43.5%	-	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
ATRX	546	genome.wustl.edu	37	X	76937874	76937874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.Q958H	0.000	107	0%	49	18.4%	-	-	benign(0.229)	tolerated(0.12)	neutral(0.284)	NULL
ATRX	546	genome.wustl.edu	37	X	76938995	76938995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.E585*	1.000	101	0%	30	36.7%	-	-	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76939653	76939653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.N365K	1.000	163	0%	59	20.3%	-	-	benign(0.082)	tolerated(0.26)	neutral(0.040)	NULL
ATRX	546	genome.wustl.edu	37	X	76953080	76953080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000489.3	-1	reviewed	p.R78Q	1.000	234	0%	98	35.7%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MAGT1	84061	genome.wustl.edu	37	X	77150822	77150822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032121.5	-1	reviewed	p.A61V	1.000	60	0%	67	11.9%	-	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_OST3_OST6
COX7B	1349	genome.wustl.edu	37	X	77158173	77158173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001866.2	+1	reviewed	p.S25I	0.994	300	0%	244	39.3%	-	-	benign(0.005)	tolerated(0.48)	neutral(0.011)	HMMPfam_COX7B
PGAM4	441531	genome.wustl.edu	37	X	77224878	77224878	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001029891.2	-1	reviewed	p.R86	0.996	104	0%	96	27.1%	-	-	-	-	-	HMMPfam_PGAM,superfamily_SSF53254
CYSLTR1	10800	genome.wustl.edu	37	X	77528341	77528341	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006639.2	-1	reviewed	p.N301	1.000	96	0%	30	36.7%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
P2RY10	27334	genome.wustl.edu	37	X	78217025	78217025	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014499.2	+1	reviewed	p.S336	0.989	115	0%	28	25%	-	-	-	-	-	NULL
GPR174	84636	genome.wustl.edu	37	X	78426848	78426848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032553.1	+1	validated	p.R115Q	0.967	223	0%	51	37.3%	-	-	benign(0.268)	tolerated(0.95)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
ITM2A	9452	genome.wustl.edu	37	X	78622682	78622682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004867.4	-1	reviewed	p.A11T	0.992	36	0%	25	32%	-	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
FAM46D	169966	genome.wustl.edu	37	X	79699070	79699070	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152630.4	+1	validated	p.K344	0.980	103	0%	26	30.8%	-	-	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79938047	79938047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153252.4	-1	reviewed	p.I1438	1.000	364	0%	57	29.8%	-	-	-	-	-	superfamily_Bromodomain
BRWD3	254065	genome.wustl.edu	37	X	79948476	79948476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153252.4	-1	reviewed	p.E1076K	1.000	155	0%	67	38.8%	-	-	possibly_damaging(0.919)	tolerated(0.06)	deleterious(0.692)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79978265	79978265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153252.4	-1	reviewed	p.H558Y	1.000	128	0%	55	25.5%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
CYLC1	1538	genome.wustl.edu	37	X	83126508	83126508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021118.1	+1	provisional	p.T36I	1.000	122	0%	33	18.2%	-	-	benign(0.018)	tolerated(0.18)	neutral(0.057)	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128296	83128296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021118.1	+1	provisional	p.N194H	0.000	44	0%	14	35.7%	-	-	unknown(0)	tolerated(0.55)	-	NULL
SATL1	340562	genome.wustl.edu	37	X	84349940	84349940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001012980.2	-1	validated	p.D399N	0.000	246	0%	184	33.7%	-	-	benign(0.004)	tolerated(0.17)	neutral(0.059)	superfamily_Acyl_CoA_acyltransferase
ZNF711	7552	genome.wustl.edu	37	X	84526520	84526520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021998.4	+1	reviewed	p.D658N	1.000	114	0.9%	18	38.9%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF711	7552	genome.wustl.edu	37	X	84526669	84526669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021998.4	+1	reviewed	p.E707D	1.000	121	0%	31	41.9%	-	-	benign(0.057)	tolerated(0.06)	neutral(0.326)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF711	7552	genome.wustl.edu	37	X	84526781	84526781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021998.4	+1	reviewed	p.P745S	1.000	48	0%	18	44.4%	-	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POF1B	79983	genome.wustl.edu	37	X	84570733	84570733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024921.3	-1	reviewed	p.D288N	0.651	133	0%	27	48.1%	-	-	probably_damaging(0.979)	tolerated(0.13)	deleterious(0.674)	NULL
POF1B	79983	genome.wustl.edu	37	X	84600944	84600944	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024921.3	-1	reviewed	p.A215	0.097	330	0%	54	44.4%	-	-	-	-	-	NULL
CHM	1121	genome.wustl.edu	37	X	85233856	85233856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000390.2	-1	reviewed	p.D77Y	0.991	203	0%	180	33.9%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_GDI,superfamily_SSF51905
PABPC5	140886	genome.wustl.edu	37	X	90691190	90691190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080832.2	+1	reviewed	p.N205S	1.000	61	0%	77	45.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCDH11X	27328	genome.wustl.edu	37	X	91133876	91133876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032968.3	+1	reviewed	p.K879N	0.991	182	0%	114	36%	-	-	possibly_damaging(0.492)	deleterious(0)	deleterious(0.609)	HMMPfam_Protocadherin
PCDH19	57526	genome.wustl.edu	37	X	99605689	99605689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105243.1	-1	reviewed	p.S830Y	1.000	138	0%	55	25.5%	-	-	possibly_damaging(0.508)	tolerated(0.11)	neutral(0.442)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99662491	99662491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001105243.1	-1	reviewed	p.A369T	1.000	45	0%	89	23.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,superfamily_Cadherin
TNMD	64102	genome.wustl.edu	37	X	99852617	99852617	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022144.2	+1	reviewed	p.N180	0.998	84	0%	52	36.5%	-	-	-	-	-	HMMPfam_BRICHOS
SYTL4	94121	genome.wustl.edu	37	X	99945153	99945153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001129896.2	-1	reviewed	p.P243S	0.000	213	0%	68	32.4%	-	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
NOX1	27035	genome.wustl.edu	37	X	100125755	100125755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007052.4	-1	reviewed	p.K32Q	0.000	218	0%	143	11.2%	-	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	NULL
TRMT2B	79979	genome.wustl.edu	37	X	100275578	100275578	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024917.5	-1	reviewed	e9-1	0.956	184	0%	91	34.1%	-	-	-	-	-	-
TRMT2B	79979	genome.wustl.edu	37	X	100292926	100292926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024917.5	-1	reviewed	p.L140I	1.000	149	0%	107	31.8%	-	-	possibly_damaging(0.941)	deleterious(0.03)	deleterious(0.751)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CENPI	2491	genome.wustl.edu	37	X	100401160	100401160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006733.2	+1	reviewed	p.N574H	0.975	266	0.4%	121	35.5%	-	-	benign(0.186)	tolerated(0.12)	neutral(0.278)	NULL
DRP2	1821	genome.wustl.edu	37	X	100503523	100503523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001939.2	+1	reviewed	p.R492Q	1.000	194	0%	93	37.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_efhand_1,superfamily_SSF47473
GLA	2717	genome.wustl.edu	37	X	100658904	100658904	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000169.2	-1	reviewed	p.Y88	1.000	125	0%	85	35.3%	-	-	-	-	-	HMMPfam_Melibiase,PatternScan_ALPHA_GALACTOSIDASE,superfamily_(Trans)glycosidases
GLA	2717	genome.wustl.edu	37	X	100662714	100662714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000169.2	-1	reviewed	p.P60S	1.000	77	0%	59	28.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_(Trans)glycosidases
HNRNPH2	3188	genome.wustl.edu	37	X	100667031	100667031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032393.1	+1	reviewed	p.P19S	1.000	156	0%	139	16.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HNRNPH2	3188	genome.wustl.edu	37	X	100667572	100667572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032393.1	+1	reviewed	p.R199Q	1.000	133	0%	128	42.2%	-	-	probably_damaging(0.97)	tolerated(0.12)	deleterious(0.673)	superfamily_RNA-binding domain RBD
HNRNPH2	3188	genome.wustl.edu	37	X	100667946	100667946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001032393.1	+1	reviewed	p.D324N	0.994	104	0%	76	38.2%	-	-	benign(0.012)	tolerated(0.17)	neutral(0.059)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ARMCX1	51309	genome.wustl.edu	37	X	100807973	100807973	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016608.1	+1	reviewed	p.A20	0.998	134	0%	181	40.3%	-	-	-	-	-	NULL
ARMCX2	9823	genome.wustl.edu	37	X	100910920	100910920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014782.5	-1	reviewed	p.A552V	0.999	57	0%	54	42.6%	-	-	benign(0.025)	deleterious(0.02)	neutral(0.384)	HMMPfam_DUF634,superfamily_ARM-type_fold
ZMAT1	84460	genome.wustl.edu	37	X	101138957	101138957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011657.2	-1	reviewed	p.S481Y	0.013	276	0%	57	35.1%	-	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139667	101139667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011657.2	-1	reviewed	p.K244N	0.565	318	0%	90	37.8%	-	-	benign(0.323)	deleterious(0.02)	deleterious(0.484)	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101857239	101857239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022838.3	+1	validated	p.G57E	0.177	115	0%	59	76.3%	-	-	benign(0.004)	tolerated(0.91)	-	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101857324	101857324	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022838.3	+1	validated	p.K85	0.007	138	0%	45	37.8%	-	-	-	-	-	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101857867	101857867	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022838.3	+1	validated	p.K266	1.000	108	0%	35	34.3%	-	-	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101909218	101909218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099410.1	+1	reviewed	p.S126Y	0.010	96	0%	117	38.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101969867	101969867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004051.2	+1	reviewed	p.A24T	0.000	136	0%	191	37.2%	-	-	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102005157	102005157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142524.1	+1	validated	p.T412A	0.911	113	0%	111	40.5%	-	-	possibly_damaging(0.653)	tolerated(0.06)	deleterious(0.552)	HMMPfam_DUF634,superfamily_ARM-type_fold
RAB40AL	282808	genome.wustl.edu	37	X	102192998	102192998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031834.1	+1	reviewed	p.R251M	0.999	260	0%	310	39.4%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
BEX1	55859	genome.wustl.edu	37	X	102317848	102317848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018476.3	-1	validated	p.D119Y	0.972	218	0%	285	39.6%	-	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	HMMPfam_BEX
NXF3	56000	genome.wustl.edu	37	X	102337969	102337969	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000427570	-1	known	p.G95R	0.002	230	0%	187	32.6%	-	-	-	-	-	NULL
BEX2	84707	genome.wustl.edu	37	X	102564854	102564854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032621.3	-1	reviewed	p.V17	0.000	98	0%	137	38%	-	-	-	-	-	HMMPfam_BEX
TCEAL7	56849	genome.wustl.edu	37	X	102586483	102586483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152278.2	+1	provisional	p.D51G	1.000	78	0%	126	34.1%	-	-	benign(0.355)	deleterious(0)	deleterious(0.557)	HMMPfam_TFA
TCEAL3	85012	genome.wustl.edu	37	X	102864315	102864315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001006933.1	+1	reviewed	p.R108Q	0.997	428	0%	589	32.8%	-	-	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	HMMPfam_TFA
RAB9B	51209	genome.wustl.edu	37	X	103080466	103080466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016370.2	-1	reviewed	p.C83	1.000	103	0%	77	37.7%	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB9B	51209	genome.wustl.edu	37	X	103080520	103080520	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016370.2	-1	reviewed	p.G65	0.938	108	0%	78	25.6%	-	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ZCCHC18	644353	genome.wustl.edu	37	X	103359337	103359337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143978.1	+1	provisional	p.L179I	0.280	68	0%	100	27%	-	-	-	-	-	NULL
FAM199X	139231	genome.wustl.edu	37	X	103434355	103434355	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_207318.2	+1	validated	p.Q355*	1.000	92	0%	37	32.4%	-	-	-	-	-	NULL
LOC644504	644504	genome.wustl.edu	37	X	105570813	105570813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_001128075.2	+1	model	p.R64Q	1.000	100	0%	45	37.8%	-	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
CXorf57	55086	genome.wustl.edu	37	X	105912552	105912552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_018015.5	+1	validated	p.A810V	0.000	94	0%	41	46.3%	-	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106096754	106096754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017752.2	+1	validated	p.F709L	1.000	177	0%	48	37.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ypt/Rab-GAP domain of gyp1p
RIPPLY1	92129	genome.wustl.edu	37	X	106144746	106144746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138382.2	-1	validated	p.A85D	0.521	83	0%	37	43.2%	-	-	probably_damaging(0.998)	tolerated(0.64)	deleterious(0.477)	NULL
TSC22D3	1831	genome.wustl.edu	37	X	106957811	106957811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_198057.2	-1	reviewed	p.P181T	1.000	100	0%	135	41.5%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_TSC22
ATG4A	115201	genome.wustl.edu	37	X	107381218	107381218	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000394892	+1	known	p.S217*	1.000	146	0%	43	30.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Peptidase_C54
COL4A6	1288	genome.wustl.edu	37	X	107418319	107418319	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001847.2	-1	reviewed	e30+1	1.000	73	0%	41	39%	-	-	-	-	-	-
COL4A6	1288	genome.wustl.edu	37	X	107422482	107422482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001847.2	-1	reviewed	p.G774E	1.000	116	0%	61	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107431153	107431153	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001847.2	-1	reviewed	p.S565	0.100	76	0%	23	34.8%	-	-	-	-	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107554053	107554053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001847.2	-1	reviewed	p.E24D	0.994	92	0%	33	36.4%	-	-	unknown(0)	tolerated(0.5)	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107911614	107911614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_033380.1	+1	reviewed	p.E1224K	1.000	41	0%	19	31.6%	-	-	unknown(0)	tolerated(0.59)	-	HMMPfam_Collagen
IRS4	8471	genome.wustl.edu	37	X	107978587	107978587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003604.2	-1	reviewed	p.A330T	1.000	60	0%	107	29%	-	-	unknown(0)	deleterious(0.02)	-	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
GUCY2F	2986	genome.wustl.edu	37	X	108619185	108619185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001522.2	-1	reviewed	p.E1090D	1.000	171	0%	39	35.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108673541	108673541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001522.2	-1	reviewed	p.E596K	1.000	136	0.7%	99	33.3%	-	-	benign(0.221)	tolerated(0.92)	neutral(0.022)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GUCY2F	2986	genome.wustl.edu	37	X	108691389	108691389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001522.2	-1	reviewed	p.R493H	0.314	206	0%	76	43.4%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109696387	109696387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_020769.2	+1	validated	p.P848S	0.001	79	0%	51	23.5%	-	-	benign(0.316)	tolerated(0.32)	neutral(0.123)	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109924735	109924735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143981.1	-1	reviewed	p.E377D	1.000	188	0%	62	37.1%	-	-	benign(0.008)	tolerated(0.09)	neutral(0.296)	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109937558	109937558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143981.1	-1	reviewed	p.R204K	1.000	88	0%	47	40.4%	-	-	possibly_damaging(0.942)	tolerated(0.57)	neutral(0.393)	NULL
CHRDL1	91851	genome.wustl.edu	37	X	110035352	110035352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001143981.1	-1	reviewed	p.L20I	1.000	170	0%	136	34.6%	-	-	benign(0.011)	tolerated(0.5)	neutral(0.011)	NULL
CAPN6	827	genome.wustl.edu	37	X	110495646	110495646	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014289.3	-1	reviewed	p.T196	0.244	112	0%	67	37.3%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
TRPC5	7224	genome.wustl.edu	37	X	111078262	111078262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012471.2	-1	reviewed	p.E595K	1.000	200	0.5%	55	29.1%	-	-	benign(0.023)	tolerated(0.69)	neutral(0.003)	HMMPfam_Ion_trans
TRPC5	7224	genome.wustl.edu	37	X	111090543	111090543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012471.2	-1	reviewed	p.N500T	1.000	166	0%	65	29.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1
TRPC5	7224	genome.wustl.edu	37	X	111095542	111095542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012471.2	-1	reviewed	p.I454T	1.000	160	0%	74	43.2%	-	-	possibly_damaging(0.813)	deleterious(0.03)	deleterious(0.671)	HMMPfam_Ion_trans
TRPC5	7224	genome.wustl.edu	37	X	111195593	111195593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012471.2	-1	reviewed	p.P19L	1.000	95	0%	22	40.9%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Ankyrin repeat
AMOT	154796	genome.wustl.edu	37	X	112025791	112025791	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113490.1	-1	reviewed	p.K739	0.994	271	0%	160	13.8%	-	-	-	-	-	NULL
AMOT	154796	genome.wustl.edu	37	X	112034010	112034010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113490.1	-1	reviewed	p.R643C	1.000	153	0%	49	36.7%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
AMOT	154796	genome.wustl.edu	37	X	112065611	112065611	+	Silent	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001113490.1	-1	reviewed	p.P248	0.995	199	0.5%	89	41.6%	-	-	-	-	-	NULL
LOC286528	286528	genome.wustl.edu	37	X	113625455	113625455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_210501.3	+1	model	p.T110N	1.000	80	0%	42	11.9%	-	-	-	-	-	HMMPfam_Ssu72
LOC286528	286528	genome.wustl.edu	37	X	113625582	113625582	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_210501.3	+1	model	p.A152	0.867	50	0%	21	42.9%	-	-	-	-	-	HMMPfam_Ssu72
RBMXL3	139804	genome.wustl.edu	37	X	114426926	114426926	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001145346.1	+1	validated	p.S974	0.033	39	0%	65	30.8%	-	-	-	-	-	NULL
LUZP4	51213	genome.wustl.edu	37	X	114540909	114540909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016383.3	+1	validated	p.R161Q	0.001	134	0%	94	30.9%	-	-	benign(0.019)	tolerated(0.23)	neutral(0.043)	NULL
PLS3	5358	genome.wustl.edu	37	X	114863548	114863548	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136025.3	+1	reviewed	p.T92	0.983	161	0%	82	35.4%	-	-	-	-	-	superfamily_EF-hand
WDR44	54521	genome.wustl.edu	37	X	117528037	117528037	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000371848	+1	known	p.V182I	0.028	137	0%	64	37.5%	-	-	-	-	-	superfamily_WD40 repeat-like
LONRF3	79836	genome.wustl.edu	37	X	118145885	118145885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001031855.1	+1	reviewed	p.I587S	1.000	291	0%	147	41.5%	-	-	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	HMMPfam_LON,HMMSmart_SM00464
CXorf56	63932	genome.wustl.edu	37	X	118675327	118675327	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_022101.3	-1	validated	p.E190	1.000	116	0%	87	26.4%	-	-	-	-	-	NULL
UPF3B	65109	genome.wustl.edu	37	X	118968882	118968882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_080632.1	-1	reviewed	p.E471K	1.000	426	0%	241	36.9%	-	-	possibly_damaging(0.902)	tolerated(0.1)	deleterious(0.643)	NULL
RNF113A	7737	genome.wustl.edu	37	X	119004652	119004652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006978.2	-1	reviewed	p.P309S	1.000	74	0%	114	33.3%	-	-	possibly_damaging(0.879)	deleterious(0.02)	deleterious(0.726)	NULL
RHOXF2	84528	genome.wustl.edu	37	X	119293258	119293258	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_032498.1	+1	provisional	p.H139	0.000	53	0%	95	13.7%	-	-	-	-	-	HMMSmart_HOX,superfamily_Homeodomain_like
ZBTB33	10009	genome.wustl.edu	37	X	119388192	119388192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006777.3	+1	reviewed	p.L308V	0.972	142	0.7%	129	47.3%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119389073	119389073	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006777.3	+1	reviewed	p.S601	0.996	182	0%	176	34.1%	-	-	-	-	-	NULL
ATP1B4	23439	genome.wustl.edu	37	X	119509334	119509334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001142447.2	+1	reviewed	p.R224C	1.000	161	0%	40	30%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_2
LAMP2	3920	genome.wustl.edu	37	X	119573112	119573112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013995.2	-1	reviewed	p.I377T	1.000	150	0%	34	38.2%	-	-	benign(0.24)	deleterious(0)	deleterious(0.469)	HMMPfam_Lamp
CUL4B	8450	genome.wustl.edu	37	X	119678399	119678399	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003588.3	-1	reviewed	p.R358	0.522	141	0%	27	37%	-	-	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
CUL4B	8450	genome.wustl.edu	37	X	119691870	119691870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003588.3	-1	reviewed	p.Y212C	1.000	478	0%	417	35.7%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
MCTS1	28985	genome.wustl.edu	37	X	119742118	119742118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001137554.1	+1	validated	p.A102T	1.000	113	0%	55	50.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PUA,HMMSmart_PUA,superfamily_PUA-like
GRIA3	2892	genome.wustl.edu	37	X	122488769	122488769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000828.4	+1	reviewed	p.S235F	1.000	281	0%	71	40.8%	-	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122536913	122536913	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000828.4	+1	reviewed	p.S383L	0.159	154	0%	35	45.7%	-	-	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123184041	123184041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042749.1	+1	validated	p.A300V	1.000	342	0%	113	43.4%	-	-	benign(0.001)	tolerated(0.97)	-	superfamily_ARM-type_fold
STAG2	10735	genome.wustl.edu	37	X	123205073	123205073	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042749.1	+1	validated	p.E811	0.991	305	0%	74	29.7%	-	-	-	-	-	superfamily_ARM-type_fold
SH2D1A	4068	genome.wustl.edu	37	X	123499661	123499661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002351.4	+1	reviewed	p.S63Y	1.000	402	0%	108	37%	-	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ODZ1	10178	genome.wustl.edu	37	X	123518248	123518248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014253.3	-1	reviewed	p.R2171H	1.000	176	0%	40	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RHS_repeat
ODZ1	10178	genome.wustl.edu	37	X	123556485	123556485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014253.3	-1	reviewed	p.R1363*	1.000	99	0%	26	30.8%	-	-	-	-	-	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123787437	123787437	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_014253.3	-1	reviewed	p.T455	0.926	157	0%	50	30%	-	-	-	-	-	NULL
DCAF12L1	139170	genome.wustl.edu	37	X	125686189	125686189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178470.4	-1	reviewed	p.L135F	0.002	63	0%	120	41.7%	-	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_WD40_like
DCAF12L1	139170	genome.wustl.edu	37	X	125686554	125686554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_178470.4	-1	reviewed	p.A13V	0.001	10	0%	12	66.7%	-	-	possibly_damaging(0.902)	deleterious(0.02)	deleterious(0.740)	NULL
ACTRT1	139741	genome.wustl.edu	37	X	127185241	127185241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138289.3	-1	reviewed	p.M315I	1.000	86	0%	35	34.3%	-	-	benign(0.052)	tolerated(0.09)	neutral(0.299)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ACTRT1	139741	genome.wustl.edu	37	X	127185682	127185682	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138289.3	-1	reviewed	p.I168	0.988	87	0%	27	25.9%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128599531	128599531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003069.3	-1	reviewed	p.R999I	1.000	224	0%	56	28.6%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_SLIDE
SMARCA1	6594	genome.wustl.edu	37	X	128621065	128621065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003069.3	-1	reviewed	p.R716I	1.000	137	0%	43	39.5%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA1	6594	genome.wustl.edu	37	X	128642055	128642055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003069.3	-1	reviewed	p.E277*	1.000	47	0%	42	11.9%	-	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128678947	128678947	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000276.3	+1	reviewed	p.Q44	0.998	461	0%	447	32%	-	-	-	-	-	NULL
XPNPEP2	7512	genome.wustl.edu	37	X	128886249	128886249	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003399.5	+1	reviewed	p.Y315*	0.000	151	0%	142	40.1%	-	-	-	-	-	NULL
ZDHHC9	51114	genome.wustl.edu	37	X	128975840	128975840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001008222.2	-1	reviewed	p.R28C	1.000	131	0%	194	39.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UTP14A	10813	genome.wustl.edu	37	X	129041357	129041357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006649.3	+1	reviewed	p.S14N	0.997	128	0%	114	40.4%	-	-	possibly_damaging(0.454)	tolerated(0.16)	neutral(0.208)	NULL
UTP14A	10813	genome.wustl.edu	37	X	129054655	129054655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006649.3	+1	reviewed	p.R294I	1.000	171	0%	131	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp14
UTP14A	10813	genome.wustl.edu	37	X	129055452	129055452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_006649.3	+1	reviewed	p.P413S	0.001	148	0%	119	33.6%	-	-	possibly_damaging(0.609)	tolerated(0.24)	neutral(0.248)	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129147377	129147377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021946.3	+1	reviewed	p.S210L	0.476	183	0%	218	38.5%	-	-	unknown(0)	deleterious(0.03)	-	NULL
ELF4	2000	genome.wustl.edu	37	X	129206263	129206263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127197.1	-1	reviewed	p.S157F	0.006	288	0%	392	37.2%	-	-	possibly_damaging(0.751)	tolerated(0.19)	neutral(0.325)	NULL
ELF4	2000	genome.wustl.edu	37	X	129208721	129208721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001127197.1	-1	reviewed	p.D28Y	1.000	68	0%	77	40.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AIFM1	9131	genome.wustl.edu	37	X	129271120	129271120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004208.3	-1	reviewed	p.E336D	1.000	213	0%	106	35.8%	-	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
SLC25A14	9016	genome.wustl.edu	37	X	129492699	129492699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003951.2	+1	reviewed	p.G195D	1.000	139	0%	54	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
RBMX2	51634	genome.wustl.edu	37	X	129543251	129543251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016024.2	+1	validated	p.I65T	1.000	76	0%	62	37.1%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
OR13H1	347468	genome.wustl.edu	37	X	130678084	130678084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004486.1	+1	provisional	p.L13F	0.946	210	0%	76	39.5%	-	-	possibly_damaging(0.833)	tolerated(0.35)	neutral(0.338)	superfamily_SSF81321
OR13H1	347468	genome.wustl.edu	37	X	130678104	130678104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001004486.1	+1	provisional	p.N19K	0.858	231	0%	80	11.3%	-	-	possibly_damaging(0.637)	tolerated(0.14)	deleterious(0.473)	superfamily_SSF81321
MST4	51765	genome.wustl.edu	37	X	131188797	131188797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_016542.3	+1	reviewed	p.E61K	1.000	101	0%	25	56%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FRMD7	90167	genome.wustl.edu	37	X	131231359	131231359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_194277.2	-1	reviewed	p.I73M	1.000	108	0%	39	43.6%	-	-	benign(0.082)	tolerated(0.11)	neutral(0.278)	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
HS6ST2	90161	genome.wustl.edu	37	X	131803180	131803180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001077188.1	-1	reviewed	p.P343L	1.000	301	0%	80	45%	-	-	possibly_damaging(0.68)	tolerated(0.08)	deleterious(0.542)	HMMPfam_HS6ST
GPC3	2719	genome.wustl.edu	37	X	132887753	132887753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004484.3	-1	reviewed	p.S263F	1.000	691	0%	148	32.4%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Glypican,PatternScan_GLYPICAN
GPC3	2719	genome.wustl.edu	37	X	133119461	133119461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004484.3	-1	reviewed	p.R6C	0.992	13	0%	26	50%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
CCDC160	347475	genome.wustl.edu	37	X	133379653	133379653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001101357.1	+1	provisional	p.R275C	0.006	47	0%	50	40%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134426248	134426248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007131.3	-1	reviewed	p.G188D	0.325	228	0%	142	10.6%	-	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134774335	134774335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343850.1	-1	model	p.S794Y	0.001	49	0%	10	40%	-	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808474	134808474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343850.1	-1	model	p.S474Y	0.044	55	0%	21	42.9%	-	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808921	134808921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343850.1	-1	model	p.Q408H	0.003	83	0%	29	37.9%	-	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134812010	134812010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	XM_002343850.1	-1	model	p.P143S	0.016	215	0%	67	37.3%	-	-	-	-	-	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135095554	135095554	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042537.1	+1	reviewed	p.T398	0.841	290	0%	137	13.9%	-	-	-	-	-	HMMPfam_Na_H_Exchanger
SLC9A6	10479	genome.wustl.edu	37	X	135104756	135104756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042537.1	+1	reviewed	p.F454L	1.000	168	0%	45	26.7%	-	-	probably_damaging(0.972)	tolerated(1)	neutral(0.414)	HMMPfam_Na_H_Exchanger
SLC9A6	10479	genome.wustl.edu	37	X	135106623	135106623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001042537.1	+1	reviewed	p.L533M	1.000	241	0%	65	38.5%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Na_H_Exchanger
MAP7D3	79649	genome.wustl.edu	37	X	135312582	135312582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_024597.3	-1	reviewed	p.R571I	0.000	139	0%	49	36.7%	-	-	possibly_damaging(0.5)	tolerated(0.1)	neutral(0.454)	NULL
GPR112	139378	genome.wustl.edu	37	X	135432519	135432519	+	Silent	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153834.3	+1	reviewed	p.T2218	0.493	257	0%	51	33.3%	-	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135453675	135453675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_153834.3	+1	reviewed	p.A2529T	0.000	59	0%	15	26.7%	-	-	benign(0.195)	deleterious(0.03)	neutral(0.383)	NULL
RBMX	27316	genome.wustl.edu	37	X	135961586	135961586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002139.3	-1	reviewed	p.M1L	1.000	179	0%	174	27.6%	-	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
ZIC3	7547	genome.wustl.edu	37	X	136651225	136651225	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003413.3	+1	reviewed	e2+1	1.000	67	0%	122	41%	-	-	-	-	-	-
MCF2	4168	genome.wustl.edu	37	X	138678725	138678725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001099855.1	-1	reviewed	p.F814V	1.000	87	0%	17	58.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CXorf66	347487	genome.wustl.edu	37	X	139038149	139038149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013403.2	-1	validated	p.K331I	0.000	245	0%	118	36.4%	-	-	benign(0.023)	tolerated(0.07)	neutral(0.320)	NULL
CXorf66	347487	genome.wustl.edu	37	X	139040285	139040285	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001013403.2	-1	validated	p.V60	0.000	226	0%	87	36.8%	-	-	-	-	-	NULL
SOX3	6658	genome.wustl.edu	37	X	139586569	139586569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005634.2	-1	reviewed	p.K219N	1.000	36	0%	33	36.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SOX3	6658	genome.wustl.edu	37	X	139587022	139587022	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005634.2	-1	reviewed	p.A68	1.000	9	0.000	21	0.429	-	-	-	-	-	NULL
CDR1	1038	genome.wustl.edu	37	X	139866370	139866370	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004065.2	-1	reviewed	p.D54	0.044	358	0%	117	35%	-	-	-	-	-	NULL
LDOC1	23641	genome.wustl.edu	37	X	140270951	140270951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_012317.2	-1	reviewed	p.A86T	1.000	73	0%	101	36.6%	-	-	benign(0.115)	tolerated(0.43)	neutral(0.022)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140953280	140953280	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138702.1	+1	reviewed	p.K49	0.000	209	0%	101	38.6%	-	-	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140985226	140985226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_138702.1	+1	reviewed	p.S561I	0.000	191	0%	98	49%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140993312	140993312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.S41F	0.936	86	0%	59	39%	-	-	unknown(0)	deleterious(0)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140994059	140994059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.R290I	0.645	217	0%	188	14.4%	-	-	probably_damaging(0.963)	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140994383	140994383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.S398I	0.000	293	0%	203	38.4%	-	-	unknown(0)	deleterious(0)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140995446	140995446	+	Silent	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.S752	0.583	78	0%	64	26.6%	-	-	-	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140995513	140995513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.L775I	0.836	100	0%	86	40.7%	-	-	unknown(0)	tolerated(0.15)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140996034	140996034	+	Silent	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.V948	0.011	130	0%	69	31.9%	-	-	-	-	-	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140996289	140996289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005462.4	+1	reviewed	p.E1033D	0.004	103	0%	63	11.1%	-	-	probably_damaging(0.996)	tolerated(0.31)	deleterious(0.489)	HMMPfam_MAGE
SLITRK4	139065	genome.wustl.edu	37	X	142718918	142718918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173078.3	-1	reviewed	p.L3M	1.000	48	0%	47	34%	-	-	benign(0.238)	tolerated(0.12)	neutral(0.285)	NULL
CXorf1	9142	genome.wustl.edu	37	X	144909302	144909302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004709.2	+1	validated	p.S36F	0.046	167	0%	148	36.5%	-	-	possibly_damaging(0.901)	-	-	NULL
FMR1	2332	genome.wustl.edu	37	X	147010244	147010244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002024.5	+1	reviewed	p.R113K	1.000	84	0%	19	31.6%	-	-	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	HMMPfam_Agenet
FMR1	2332	genome.wustl.edu	37	X	147022171	147022171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002024.5	+1	reviewed	p.N422T	1.000	127	0%	51	37.3%	-	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMSmart_SM00322
FMR1NB	158521	genome.wustl.edu	37	X	147063085	147063085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_152578.2	+1	validated	p.P55T	0.000	43	0%	87	35.6%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
AFF2	2334	genome.wustl.edu	37	X	148044426	148044426	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002025.3	+1	reviewed	p.E958*	0.993	151	0%	43	55.8%	-	-	-	-	-	HMMPfam_AF-4
MAMLD1	10046	genome.wustl.edu	37	X	149639363	149639363	+	Silent	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005491.3	+1	reviewed	p.I506	0.967	62	0%	46	30.4%	-	-	-	-	-	NULL
MTMR1	8776	genome.wustl.edu	37	X	149896165	149896165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003828.2	+1	reviewed	p.F145V	1.000	214	0%	61	37.7%	-	-	possibly_damaging(0.948)	tolerated(0.55)	neutral(0.398)	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
MTMR1	8776	genome.wustl.edu	37	X	149901202	149901202	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_003828.2	+1	reviewed	p.K352	1.000	108	0%	26	34.6%	-	-	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
CD99L2	83692	genome.wustl.edu	37	X	149944705	149944705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000355330	-1	known	p.S198L	0.907	25	0%	28	35.7%	-	-	-	-	-	NULL
CD99L2	83692	genome.wustl.edu	37	X	149999737	149999737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_031462.3	-1	reviewed	p.E33K	0.926	133	0%	48	37.5%	-	-	unknown(0)	tolerated(0.1)	-	NULL
HMGB3	3149	genome.wustl.edu	37	X	150156378	150156378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005342.2	+1	validated	p.E198D	0.290	54	0%	60	11.7%	-	-	unknown(0)	deleterious(0)	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150789415	150789415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173493.2	+1	reviewed	p.G74D	0.001	117	0%	32	59.4%	-	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
PASD1	139135	genome.wustl.edu	37	X	150840762	150840762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_173493.2	+1	reviewed	p.M515I	0.007	130	0%	86	32.6%	-	-	unknown(0)	deleterious(0.01)	-	NULL
PRRG3	79057	genome.wustl.edu	37	X	150873801	150873801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000448324	+1	known	p.A69T	0.002	120	0%	130	38.5%	-	-	benign(0.083)	-	-	NULL
CNGA2	1260	genome.wustl.edu	37	X	150912371	150912371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005140.1	+1	reviewed	p.L466M	1.000	115	0%	89	36%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_cNMP,superfamily_cNMP_binding
MAGEA4	4103	genome.wustl.edu	37	X	151092752	151092752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011548.1	+1	reviewed	p.V206I	0.000	275	0%	181	38.7%	-	-	benign(0.007)	tolerated(0.43)	neutral(0.013)	HMMPfam_MAGE
MAGEA10	4109	genome.wustl.edu	37	X	151303233	151303233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011543.1	-1	reviewed	p.P287H	0.012	160	0%	153	45.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
MAGEA10	4109	genome.wustl.edu	37	X	151303313	151303313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001011543.1	-1	reviewed	p.E260D	0.000	153	0%	136	36%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_MAGE
ZNF185	7739	genome.wustl.edu	37	X	152083352	152083352	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_007150.3	+1	reviewed	p.Q45*	1.000	60	0%	86	37.2%	-	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159167	152159167	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103150.1	-1	validated	p.R326*	0.003	41	0%	64	39.1%	-	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152160139	152160139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001103150.1	-1	validated	p.A2T	0.669	87	0%	136	27.9%	-	-	possibly_damaging(0.481)	tolerated(0.19)	neutral(0.209)	NULL
PNMA3	29944	genome.wustl.edu	37	X	152226667	152226667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_013364.4	+1	reviewed	p.E419*	0.002	91	0%	155	25.8%	-	-	-	-	-	NULL
MAGEA1	4100	genome.wustl.edu	37	X	152482739	152482739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_004988.4	-1	reviewed	p.S91Y	0.000	123	0%	133	41.4%	-	-	benign(0.313)	tolerated(1)	neutral(0.098)	NULL
ZNF275	10838	genome.wustl.edu	37	X	152612468	152612468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001080485.2	+1	validated	p.T109A	0.013	104	1%	161	37.9%	-	-	benign(0.003)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP92	139735	genome.wustl.edu	37	X	152686459	152686459	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136273.1	+1	validated	p.Y208	0.000	88	0%	100	33%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP92	139735	genome.wustl.edu	37	X	152686648	152686648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001136273.1	+1	validated	p.K271N	1.000	62	0%	77	28.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ATP2B3	492	genome.wustl.edu	37	X	152830558	152830558	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001001344.2	+1	reviewed	p.T1113	0.097	20	0%	40	32.5%	-	-	-	-	-	NULL
SLC6A8	6535	genome.wustl.edu	37	X	152958463	152958463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000328897	+1	known	p.A255D	0.020	61	0%	150	39.3%	-	-	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	HMMPfam_SNF
BCAP31	10134	genome.wustl.edu	37	X	152966185	152966185	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024450.1	-1	reviewed	NULL	0.000	20	0%	25	36%	-	-	-	-	-	-
ABCD1	215	genome.wustl.edu	37	X	152991236	152991236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000033.3	+1	reviewed	p.R172H	0.967	42	0%	77	41.6%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_ABC_membrane_2
ABCD1	215	genome.wustl.edu	37	X	152991541	152991541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000033.3	+1	reviewed	p.R274W	0.516	13	0%	37	40.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ABC_membrane_2
ABCD1	215	genome.wustl.edu	37	X	153005556	153005556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000033.3	+1	reviewed	p.G500D	1.000	38	0%	103	32%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
PLXNB3	5365	genome.wustl.edu	37	X	153033217	153033217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005393.2	+1	reviewed	p.A312V	0.440	10	0%	24	41.7%	-	-	benign(0.389)	tolerated(0.07)	neutral(0.444)	HMMSmart_Sema,superfamily_Sema
PLXNB3	5365	genome.wustl.edu	37	X	153034457	153034457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005393.2	+1	reviewed	p.P441S	0.389	99	0%	250	36.8%	-	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMSmart_Sema,superfamily_Sema
PLXNB3	5365	genome.wustl.edu	37	X	153041462	153041462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005393.2	+1	reviewed	p.R1508W	0.998	22	0%	45	31.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
L1CAM	3897	genome.wustl.edu	37	X	153130376	153130376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000425.3	-1	reviewed	p.D982E	0.916	68	0%	130	38.5%	-	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
L1CAM	3897	genome.wustl.edu	37	X	153135896	153135896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000425.3	-1	reviewed	p.H251Q	0.996	100	0%	231	35.1%	-	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AVPR2	554	genome.wustl.edu	37	X	153171602	153171602	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000054.4	+1	reviewed	p.F214	0.994	57	0%	138	39.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP4	393	genome.wustl.edu	37	X	153186165	153186165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001666.4	-1	reviewed	p.S199I	0.001	17	0%	33	21.2%	-	-	benign(0.157)	deleterious(0)	neutral(0.459)	NULL
RENBP	5973	genome.wustl.edu	37	X	153209094	153209094	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002910.5	-1	reviewed	p.G122	0.956	31	0%	85	45.9%	-	-	-	-	-	superfamily_Six-hairpin glycosidases
HCFC1	3054	genome.wustl.edu	37	X	153217994	153217994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005334.2	-1	reviewed	p.V1638A	1.000	5	0.000	22	0.318	-	-	benign(0.095)	tolerated(0.15)	neutral(0.248)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153219927	153219927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005334.2	-1	reviewed	p.S1308L	0.988	266	0%	477	39%	-	-	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220610	153220610	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_005334.2	-1	reviewed	p.C1080	0.429	196	0%	359	10.3%	-	-	-	-	-	NULL
FLNA	2316	genome.wustl.edu	37	X	153578514	153578514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.F2406	1.000	97	0%	155	42.6%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153579378	153579378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.S2352Y	1.000	69	0%	138	33.3%	-	-	probably_damaging(0.991)	tolerated(0.42)	neutral(0.458)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153582639	153582639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.G1813C	1.000	34	0%	78	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153588139	153588139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.D1314N	0.987	27	0%	48	12.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153588202	153588202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.V1293I	0.962	17	0%	43	44.2%	-	-	benign(0.003)	tolerated(0.55)	neutral(0.007)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153590359	153590359	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.T938	0.001	127	0%	187	38%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153594987	153594987	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.N336	0.598	160	0%	331	32.9%	-	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153596326	153596326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001110556.1	-1	reviewed	p.K169T	1.000	71	0%	183	34.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ATP6AP1	537	genome.wustl.edu	37	X	153664080	153664080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001183.4	+1	reviewed	p.A419V	1.000	114	0%	247	33.6%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_ATP-synt_S1
PLXNA3	55558	genome.wustl.edu	37	X	153689468	153689468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017514.3	+1	reviewed	p.Q208H	1.000	113	0%	206	34.5%	-	-	possibly_damaging(0.924)	tolerated(0.1)	deleterious(0.659)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PLXNA3	55558	genome.wustl.edu	37	X	153694582	153694582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_017514.3	+1	reviewed	p.R923H	1.000	78	0%	195	33.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
FAM3A	60343	genome.wustl.edu	37	X	153735636	153735636	+	Silent	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_021806.2	-1	validated	p.L165	0.981	50	0%	134	38.1%	-	-	-	-	-	NULL
G6PD	2539	genome.wustl.edu	37	X	153762303	153762303	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000402.3	-1	reviewed	p.E269D	1.000	112	0%	170	41.2%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_G6PD_C,superfamily_SSF55347
G6PD	2539	genome.wustl.edu	37	X	153774293	153774293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000402.3	-1	reviewed	p.F56L	1.000	94	0%	205	12.2%	-	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	superfamily_NAD(P)-bd
DKC1	1736	genome.wustl.edu	37	X	153993724	153993724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_001363.3	+1	reviewed	p.I30M	0.993	138	0%	261	37.2%	-	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	NULL
MPP1	4354	genome.wustl.edu	37	X	154011737	154011737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002436.3	-1	reviewed	p.S304I	1.000	80	0%	84	39.3%	-	-	benign(0.051)	tolerated(0.41)	neutral(0.018)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP1	4354	genome.wustl.edu	37	X	154012323	154012323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002436.3	-1	reviewed	p.R282M	1.000	103	0%	66	37.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP1	4354	genome.wustl.edu	37	X	154014661	154014661	+	Silent	SNP	C	C	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_002436.3	-1	reviewed	p.A165	0.138	82	0%	49	36.7%	-	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
ENSG00000203870	0	genome.wustl.edu	37	X	154059088	154059088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	ENST00000369529	-1	known	p.S15Y	0.000	136	0%	61	13.1%	-	-	probably_damaging(0.978)	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154157295	154157295	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000132.3	-1	reviewed	p.Y1590*	0.001	128	0%	42	9.5%	-	-	-	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154157942	154157942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000132.3	-1	reviewed	p.D1375Y	0.001	364	0%	95	31.6%	-	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
F8	2157	genome.wustl.edu	37	X	154159170	154159170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NM_000132.3	-1	reviewed	p.K965N	0.001	63	0%	26	26.9%	-	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
IL9R	3581	genome.wustl.edu	37	X	155227375	155227375	+	RNA	SNP	G	G	T	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024033.1	+1	reviewed	NULL	0.001	338	0%	218	37.6%	-	-	-	-	-	-
IL9R	3581	genome.wustl.edu	37	X	155227384	155227384	+	RNA	SNP	G	G	A	novel		TCGA-D1-A103-01A-11D-A10M-09	TCGA-D1-A103-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d421fa4c-647d-40a5-80ab-7e376574efc3	0bd82953-f6fe-435a-9438-1a4b14b9a5ad	NR_024033.1	+1	reviewed	NULL	0.003	370	0%	228	36.4%	-	-	-	-	-	-
