Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27106528	27106528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_006015.4	+1	reviewed	p.E2047*	1.000	473	0%	391	33%	47	82.9%	-	-	-	NULL
GABPB2	126626	genome.wustl.edu	37	1	151065781	151065781	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_144618.2	+1	validated	p.V130	1.000	349	0%	332	29.2%	3	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
GTF3C2	2976	genome.wustl.edu	37	2	27550142	27550155	+	Splice_Site	DEL	GGAATGAACCCTGG	GGAATGAACCCTGG	-	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	GGAATGAACCCTGG	GGAATGAACCCTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001035521.1	-1	validated	e17-1	0.998:0.998:0.996:0.948:0.058:0.092:0.091:0.086:0.508:0.505:0.849:0.856	-	-	-	-	-	-	-	-	-	-
ALK	238	genome.wustl.edu	37	2	29551215	29551215	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_004304.3	-1	reviewed	e6+1	1.000	94	0%	90	31.1%	0	-	-	-	-	-
ENSG00000202174	0	genome.wustl.edu	37	2	133010779	133010779	+	RNA	DEL	G	G	-	rs111517614		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	ENST00000365304	-1	novel	NULL	1.000	-	-	-	-	-	-	-	-	-	-
SCN3A	6328	genome.wustl.edu	37	2	166032822	166032822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_006922.3	-1	reviewed	p.R28H	1.000	609	0%	522	27.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42949567	42949567	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001134656.1	+1	validated	p.I48	0.229	524	0%	489	30.3%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ALS2CL	259173	genome.wustl.edu	37	3	46716140	46716140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_147129.2	-1	validated	p.R782Q	0.000	263	0%	207	28.5%	16	62.5%	benign(0.097)	tolerated(0.29)	neutral(0.037)	superfamily_VPS9 domain (Pfam 02204)
DZIP3	9666	genome.wustl.edu	37	3	108363341	108363341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_014648.3	+1	validated	p.P491L	1.000	266	0%	242	31.4%	5	40%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119109678	119109678	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_020754.2	+1	reviewed	p.L243	1.000	123	0%	130	32.3%	3	0%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_006218.2	+1	reviewed	p.H1047L	1.000	233	0%	229	38.4%	9	44.4%	possibly_damaging(0.815)	tolerated(1)	neutral(0.307)	HMMSmart_PI3Kc,superfamily_Kinase_like
GPR125	166647	genome.wustl.edu	37	4	22390100	22390100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_145290.2	-1	validated	p.R1065Q	1.000	127	0%	165	29.7%	30	56.6%	probably_damaging(0.986)	tolerated(0.08)	deleterious(0.734)	NULL
PHOX2B	8929	genome.wustl.edu	37	4	41749672	41749672	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	ENST00000510424	-1	known	p.R18H	0.000	24	0%	20	45%	0	-	-	-	-	NULL
PCDHA13	56136	genome.wustl.edu	37	5	140263407	140263407	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_018904.2	+1	reviewed	p.Y518	0.575	68	0%	48	29.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140810601	140810601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_003735.2	+1	reviewed	p.R92Q	1.000	74	0%	62	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ME1	4199	genome.wustl.edu	37	6	84117512	84117512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_002395.4	-1	reviewed	p.E63K	1.000	252	0%	215	27.4%	1	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	superfamily_SSF53223
TRGV4	6977	genome.wustl.edu	37	7	38393444	38393444	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	ENST00000390345	-1	known	p.V76L	0.000	429	0%	332	22%	0	-	probably_damaging(0.991)	tolerated(0.65)	neutral(0.447)	HMMPfam_V-set,superfamily_SSF48726
COL1A2	1278	genome.wustl.edu	37	7	94057153	94057153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_000089.3	+1	reviewed	p.R1161H	1.000	149	0.7%	134	35.1%	256	11.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COLFI,HMMSmart_SM00038
SLC39A14	23516	genome.wustl.edu	37	8	22262229	22262234	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	rs111662782	byCluster;by1000genomes	TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	GCTGCT	GCTGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001128431.2	+1	validated	p.LL5in_frame_del	1.000:1.000:0.996:0.998:0.996:0.001	-	-	-	-	-	-	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16552542	16552542	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_017637.5	-1	validated	p.G219*	1.000	49	0%	54	33.3%	0	-	-	-	-	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34971612	34971612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_015297.1	+1	validated	p.R106H	1.000	63	0%	71	21.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39103796	39103796	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_033655.3	-1	reviewed	p.S827	0.525	208	0%	196	19.9%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
COL5A1	1289	genome.wustl.edu	37	9	137622191	137622191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_000093.3	+1	reviewed	p.D345G	1.000	79	0%	71	23.9%	3	0%	unknown(0)	tolerated(0.35)	-	NULL
ABCA2	20	genome.wustl.edu	37	9	139911530	139911530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_212533.2	-1	reviewed	p.A897V	1.000	36	0%	27	37%	1	0%	possibly_damaging(0.5)	tolerated(0.11)	neutral(0.439)	NULL
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	ENST00000371953	+1	known	p.R233*	0.984	295	0%	252	57.9%	13	30.7%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
AMBRA1	55626	genome.wustl.edu	37	11	46569818	46569818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_017749.2	-1	validated	p.R38Q	1.000	75	0%	57	26.3%	5	80%	possibly_damaging(0.914)	tolerated(0.06)	deleterious(0.689)	NULL
CCND1	595	genome.wustl.edu	37	11	69466027	69466035	+	In_Frame_Del	DEL	GACGTGCGG	GACGTGCGG	-	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	GACGTGCGG	GACGTGCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_053056.2	+1	reviewed	p.RDV291in_frame_del	1.000:1.000:0.989:1.000:1.000:0.995:0.999:0.998:0.105	-	-	-	-	-	-	-	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122667694	122667694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_032873.4	+1	validated	p.K437R	1.000	276	0%	283	26.9%	5	40%	benign(0.119)	tolerated(0.56)	neutral(0.016)	HMMPfam_PGAM,superfamily_SSF53254
CD69	969	genome.wustl.edu	37	12	9907656	9907656	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001781.2	-1	reviewed	e3+2	1.000	83	0%	102	32.4%	0	-	-	-	-	-
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	byCluster	TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_033360.2	-1	reviewed	p.G12A	1.000	324	0%	304	28.3%	4	50%	possibly_damaging(0.434)	deleterious(0.03)	deleterious(0.506)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LMBR1L	55716	genome.wustl.edu	37	12	49504337	49504337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_018113.2	-1	validated	p.M1R	1.000	79	0%	89	37.1%	6	16.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
MYO16	23026	genome.wustl.edu	37	13	109475617	109475617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_015011.1	+1	validated	p.S341L	0.975	207	0%	177	28.2%	0	-	benign(0.069)	deleterious(0)	neutral(0.449)	NULL
CDC16	8881	genome.wustl.edu	37	13	115022695	115022695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001078645.1	+1	reviewed	p.Q414E	1.000	349	0%	282	29.8%	56	46.4%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00028,superfamily_TPR-like
OR4K1	79544	genome.wustl.edu	37	14	20404558	20404558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001004063.2	+1	validated	p.T245A	0.505	427	0%	415	22.7%	1	0%	benign(0.182)	tolerated(0.1)	neutral(0.303)	HMMPfam_7tm_1,superfamily_SSF81321
PNN	5411	genome.wustl.edu	37	14	39650458	39650458	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_002687.3	+1	validated	p.Q515	1.000	249	0%	232	31.9%	29	44.8%	-	-	-	NULL
FKBP3	2287	genome.wustl.edu	37	14	45590732	45590732	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_002013.3	-1	reviewed	p.G137fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FKBP_C,superfamily_FKBP-like
ATXN3	4287	genome.wustl.edu	37	14	92563028	92563028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_004993.5	-1	reviewed	p.T60M	0.999	282	0%	215	26.5%	3	66.6%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Josephin
RIN3	79890	genome.wustl.edu	37	14	93154538	93154540	+	In_Frame_Del	DEL	GGC	GGC	-	rs148538588	byCluster;by1000genomes	TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_024832.3	+1	validated	p.G970in_frame_del	0.984:0.981:0.979	-	-	-	-	-	-	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3788643	3788643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_004380.2	-1	reviewed	p.I1437M	1.000	156	0%	170	30%	22	31.8%	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
APOBR	55911	genome.wustl.edu	37	16	28508943	28508943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_018690.2	+1	reviewed	p.Q852K	0.013	119	0%	141	28.4%	3	33.3%	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
CTCF	10664	genome.wustl.edu	37	16	67650765	67650766	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_006565.2	+1	reviewed	p.Y358fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DNAH9	1770	genome.wustl.edu	37	17	11726208	11726208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_001372.3	+1	reviewed	p.R3035C	1.000	315	0%	307	20.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MED24	9862	genome.wustl.edu	37	17	38184164	38184164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_014815.3	-1	reviewed	p.S482N	0.890	184	0%	197	28.4%	26	38.4%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
RBM39	9584	genome.wustl.edu	37	20	34302145	34302145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_184234.1	-1	reviewed	p.T353I	1.000	303	0%	266	28.9%	85	42.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PATZ1	23598	genome.wustl.edu	37	22	31741398	31741398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_014323.2	-1	reviewed	p.E64G	1.000	41	0%	27	29.6%	9	55.5%	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KCND1	3750	genome.wustl.edu	37	X	48826421	48826421	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_004979.4	-1	reviewed	p.R86	0.363	57	0%	54	22.2%	1	0%	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
GPKOW	27238	genome.wustl.edu	37	X	48976074	48976074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_015698.4	-1	validated	p.G184S	0.998	140	0%	166	34.9%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-patch,HMMSmart_G_patch
HUWE1	10075	genome.wustl.edu	37	X	53620424	53620424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	NM_031407.4	-1	reviewed	p.T1214M	1.000	220	0%	181	27.1%	6	0%	benign(0.176)	tolerated(0.16)	neutral(0.075)	NULL
MIR514A3	574518	genome.wustl.edu	37	X	146363503	146363503	+	RNA	SNP	A	A	T	novel		TCGA-D1-A16D-01A-11D-A12J-09	TCGA-D1-A16D-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c5634b7-4e32-4b68-abcf-deef7e18a064	756d5658-531e-4703-b474-a3aa70c38a60	ENST00000385131	-1	known	NULL	0.000	1110	0%	964	10.8%	0	-	-	-	-	-
