Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM2	7799	hgsc.bcm.edu	37	1	14105142	14105142	+	Missense_Mutation	SNP	T	T	A	rs151133690	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRDM2-116	NM_015866	exon8	c.T852A	p.D284E	AGATGATGATGAT	.	67	13	60	0	T|0.997;A|0.003	0	0	0	0	0
FHAD1	114827	broad.mit.edu	37	1	15635136	15635136	+	Missense_Mutation	SNP	A	A	C	rs201389821		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FHAD1-69	NM_052929	exon7	c.A943C	p.K315Q	TACAGCAAGGTGC	.	143	5	181	1	.	0	0	0	0	0
CLCNKA	1187	bcgsc.ca	37	1	16357147	16357147	+	Missense_Mutation	SNP	C	C	T	rs45568437		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLCNKA-91	NM_004070	exon15	c.C1600T	p.R534W	CTGCCACGGATTC	.	163	6	175	0	.	0	0	0	0	0
PINK1	65018	hgsc.bcm.edu	37	1	20960230	20960230	+	Silent	SNP	C	C	T	rs45530340	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PINK1-380	NM_032409	exon1	c.C189T	p.L63L	CGGGCTCCCTAAC	.	5	4	0	0	C|0.868;T|0.132	0	0	0	0	0
AKR1A1	10327	broad.mit.edu	37	1	46032652	46032652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKR1A1-226	NM_006066	exon5	c.T316G	p.Y106D	CTGGAGTATCTGG	.	78	3	104	2	.	0	0	0	0	0
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75684227	75684227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC44A5-95	NM_001130058	exon17	c.C1477T	p.P493S	CATCAGGTTTTTT	.	171	50	177	0	.	0	0	0	0	0
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97564178	97564178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPYD-278	NM_000110	exon21	c.G2633A	p.S878N	CCAAAACTTGGCA	.	64	31	60	0	.	0	0	0	0	0
KCND3	3752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112329612	112329612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCND3-155	NM_004980	exon3	c.G1223A	p.R408Q	TAAATCCGGCTAA	.	203	44	157	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158641930	158641930	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPTA1-142	NM_003126	exon11	c.T1407C	p.H469H	CTGACGATGACGC	.	78	25	92	0	.	0	0	0	0	0
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162353216	162353216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	C1orf226-1	NM_001135240	exon3	c.A691G	p.K231E	AGAGGCAAAGTTC	.	245	99	293	0	.	0	0	0	0	0
GPR161	23432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168059902	168059902	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR161-90	NM_001267609	exon5	c.G1164C	p.L388L	CAGGCCCAGGTCT	.	69	28	79	0	.	0	0	0	0	0
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193111054	193111054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CDC73-1009	NM_024529	exon7	c.C587A	p.T196N	GATCTACTATCAA	.	213	80	337	0	.	0	0	0	0	0
ASPM	259266	bcgsc.ca	37	1	197112533	197112533	+	Silent	SNP	G	G	A	rs6677082	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ASPM-615	NM_001206846	exon3	c.C849T	p.S283S	ATTTACGGAATTA	.	125	5	107	0	G|0.240;A|0.760	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062269	216062269	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	USH2A-115	NM_206933	exon41	c.A7722G	p.L2574L	CAAGTATAGACGG	.	62	26	66	0	.	0	0	0	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805480	21805480	+	Silent	SNP	T	T	C	rs201836118		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_207371	exon4	c.A1272G	p.E424E	CTCCTCTTCCTCC	.	46	4	64	0	.	0	0	0	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	46	4	66	0	.	0	0	0	0	0
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43606665	43606665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RET-4507	NM_020630	exon7	c.T1274C	p.V425A	GGAAAGTCTGTGT	.	100	28	79	0	.	0	0	0	0	0
NPFFR1	64106	hgsc.bcm.edu	37	10	72014863	72014863	+	Silent	SNP	G	G	A	rs60225321	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	11	11	1	0	G|0.929;A|0.071	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	77160944	77160944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF503-91	NM_032772	exon1	c.G234T	p.K78N	CAGCATCTTCAGC	.	42	12	53	0	.	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001134363	exon1	c.G90A	p.R30R	TGCCCGGGCGTCC	.	13	12	1	0	G|0.808;A|0.192	0	0	0	0	0
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118354303	118354303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PNLIPRP1-154	NM_006229	exon5	c.C392A	p.A131D	CCCAAGCCACCTA	.	123	45	111	0	.	0	0	0	0	0
FANK1	92565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127693588	127693588	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FANK1-91	NM_145235	exon7	c.G675A	p.V225V	CAGTGTGATTGAG	.	159	49	167	1	.	0	0	0	0	0
TH	7054	bcgsc.ca	37	11	2188688	2188688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TH-90	NM_199292	exon7	c.C765A	p.Y255X	GGCGGTGTACTCC	.	69	4	72	0	.	0	0	0	0	0
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5809714	5809714	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR52N1-69	NM_001001913	exon1	c.G333C	p.G111G	CTCCATCCCTGTG	.	79	57	197	0	.	0	0	0	0	0
EML3	256364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62376216	62376216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EML3-91	NM_153265	exon8	c.G991A	p.D331N	TTCCATCCTTATC	.	359	69	233	0	.	0	0	0	0	0
CCDC88B	283234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64111938	64111938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CCDC88B-94	NM_032251	exon14	c.G1925C	p.R642T	GGTTGAGACAGGA	.	157	50	76	0	.	0	0	0	0	0
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66272099	66272099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPP3-46	NM_130443	exon17	c.G1895A	p.G632E	CCACAGGGGATGT	.	52	21	51	0	.	0	0	0	0	0
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66384417	66384417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RBM14-92	NM_001198837	exon1	c.C226G	p.L76V	AGGCCTCTTAATA	.	122	11	66	0	.	0	0	0	0	0
CORO1B	57175	hgsc.bcm.edu	37	11	67206163	67206163	+	Silent	SNP	G	G	A	rs148492786	by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CORO1B-108	NM_020441	exon10	c.C1323T	p.S441S	GCTGCCGCTGGGG	.	12	8	0	0	G|0.997;A|0.003	0	0	0	0	0
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74800245	74800245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR2AT4-69	NM_001005285	exon1	c.G514C	p.A172P	TATATGCCATCTG	.	103	43	144	0	.	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118344503	118344503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL-1255	NM_001197104	exon3	c.G2629C	p.D877H	GAGAGAGACCGGG	.	49	18	49	0	.	0	0	0	0	0
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118963200	118963200	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HMBS-90	NM_000190	exon11	c.C738T	p.R246R	GCTTCGCTGCATC	.	75	6	85	0	.	0	0	0	0	0
FLI1	2313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128677078	128677078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FLI1-1084	NM_002017	exon7	c.C725A	p.P242H	CAGGTCCTCCCCT	.	76	30	88	0	.	0	0	0	0	0
IGSF9B	22997	hgsc.bcm.edu	37	11	133790390	133790390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IGSF9B-68	NM_014987	exon18	c.C3230A	p.P1077H	CCTCGGGGGAGGC	.	27	14	7	0	.	0	0	0	0	0
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2614015	2614015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CACNA1C-34	NM_001129831	exon8	c.A1121G	p.D374G	TCAATGATGCCGT	.	245	47	180	0	.	0	0	0	0	0
CLEC4C	170482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7882323	7882323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLEC4C-93	NM_130441	exon7	c.G511T	p.G171C	GTTCACCTGAGTG	.	127	25	92	0	.	0	0	0	0	0
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8995922	8995922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	A2ML1-93	NM_144670	exon12	c.G1441A	p.A481T	GCCGATGCAAGCC	.	151	35	83	0	.	0	0	0	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10541381	10541381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001199805	exon7	c.G29C	p.R10P	CTGTGTCGAGACC	.	87	7	58	0	.	0	0	0	0	0
BCAT1	586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25002802	25002802	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BCAT1-522	NM_001178093	exon6	c.A628C	p.T210P	TAAAGGTTCCACT	.	99	37	97	1	.	0	0	0	0	0
ITPR2	3709	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26809287	26809287	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ITPR2-542	NM_002223	exon19	c.T2387G	p.V796G	ACAGGCACCACGG	.	137	40	129	1	.	0	0	0	0	0
KIAA1551	55196	broad.mit.edu	37	12	32135980	32135980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_018169	exon4	c.A2091C	p.R697S	ACTCAGAACAAAC	.	56	6	41	1	.	0	0	0	0	0
KIAA1551	55196	broad.mit.edu	37	12	32136103	32136103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_018169	exon4	c.G2214C	p.L738F	AGCTTTGTCGATG	.	69	3	58	0	.	0	0	0	0	0
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	45833607	45833607	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ANO6-516	NM_001142679	exon20	c.C2676G	p.L892L	CTCCCTCTATTAT	.	56	5	29	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49445206	49445206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL2-612	NM_003482	exon10	c.C2260G	p.P754A	GCCGGGGGGACAG	.	46	12	10	0	.	0	0	0	0	0
AQP2	359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50344855	50344855	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AQP2-92	NM_000486	exon1	c.T242A	p.V81D	GCCACGTCTCCGT	.	131	37	40	0	.	0	0	0	0	0
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56705180	56705180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CNPY2-68	NM_014255	exon4	c.G223C	p.E75Q	GGGCCTCTGAGCG	.	89	26	85	0	.	0	0	0	0	0
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57486328	57486329	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NAB2-92	NM_005967	exon3	c.1055_1056del	p.352_352del	TAGCCCGAGAGAG	.	189	52	168	0	.	0	0	0	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57577207	57577207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRP1-596	NM_002332	exon35	c.G5708T	p.G1903V	TCAGGGGAATTCC	.	139	26	135	0	.	0	0	0	0	0
OTOGL	283310	broad.mit.edu;bcgsc.ca	37	12	80717566	80717566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_173591	exon34	c.C4118G	p.P1373R	CTACACCCTGTTT	.	301	9	164	0	.	0	0	0	0	0
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85257275	85257275	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC6A15-93	NM_182767	exon11	c.T1761A	p.A587A	AACACTAGCTATT	.	328	153	191	0	.	0	0	0	0	0
EEA1	8411	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93202827	93202827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EEA1-229	NM_003566	exon18	c.G2305A	p.E769K	TCAATTCTGTGGC	.	62	17	65	1	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	5	5	0	0	C|0.752;T|0.248	0	0	0	0	0
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131593280	131593280	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR133-191	NM_198827	exon18	c.A1899T	p.Q633H	CTGCCAAGTGATG	.	85	68	121	0	.	0	0	0	0	0
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21840079	21840079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SUPT16H-90	NM_007192	exon3	c.A284G	p.E95G	GCATTCTCATTGC	.	110	39	122	0	.	0	0	0	0	0
LRRC16B	90668	broad.mit.edu;bcgsc.ca	37	14	24524508	24524508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRRC16B-139	NM_138360	exon8	c.C594A	p.H198Q	CAGCCACTTGGAG	.	193	9	149	0	.	0	0	0	0	0
CPNE6	9362	broad.mit.edu	37	14	24545620	24545620	+	Silent	SNP	C	C	T	rs139035718		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CPNE6-93	NM_006032	exon12	c.C1110T	p.F370F	CAACTTCGAGGTA	.	106	4	88	0	C|1.000;T|0.000	0	0	0	0	0
AKAP6	9472	broad.mit.edu	37	14	33004880	33004880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKAP6-733	NM_004274	exon3	c.C445A	p.L149I	GTGCAGCTCCTCT	.	210	8	107	1	.	0	0	0	0	0
MIPOL1	145282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	37736243	37736243	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MIPOL1-91	NM_001195296	exon6	c.G120T	p.R40R	GCATCGGAAATCC	.	208	68	178	0	.	0	0	0	0	0
FRMD6	122786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52187025	52187025	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FRMD6-524	NM_001267046	exon11	c.C1277G	p.S426X	GCAGCTCAATGAC	.	128	37	146	2	.	0	0	0	0	0
TRMT5	57570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	61446459	61446459	+	Missense_Mutation	SNP	G	G	C	rs188092813		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRMT5-91	NM_020810	exon2	c.C157G	p.Q53E	TTCTTTGACCCAA	.	116	7	74	0	G|0.999;C|0.000	0	0	0	0	0
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75265522	75265522	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	YLPM1-71	NM_019589	exon5	c.A3522G	p.G1174G	ACCAGGAGATGGT	.	115	31	97	0	.	0	0	0	0	0
IFT43	112752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76452154	76452154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IFT43-90	NM_001102564	exon1	c.G25C	p.E9Q	TTGGACGAGGAGC	.	109	27	100	0	.	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77951057	77951057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ISM2-91	NM_199296	exon2	c.C347T	p.A116V	GTGTTGGCCAATC	.	196	50	177	0	.	0	0	0	0	0
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78203387	78203387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SNW1-187	NM_012245	exon6	c.A565T	p.N189Y	CAGAGTTGAATGC	.	55	38	46	0	.	0	0	0	0	0
ZNF770	54989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35275401	35275401	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF770-91	NM_014106	exon3	c.C235T	p.L79L	AAGGCAGACTATG	.	37	19	48	1	.	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	8	8	1	0	C|0.941;T|0.059	0	0	0	0	0
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86286897	86286897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKAP13-258	NM_006738	exon36	c.C8245A	p.H2749N	CCTTTTCACATAC	.	103	40	99	0	.	0	0	0	0	0
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91450636	91450636	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAN2A2-136	NM_006122	exon7	c.A1107G	p.Q369Q	CTGCCAATTTGAT	.	61	28	73	0	.	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PKD1-91	NM_000296	exon22	c.T8087G	p.L2696R	AGGATGAGCATCA	.	142	4	105	0	.	0	0	0	0	0
MMP25	64386	hgsc.bcm.edu	37	16	3108863	3108863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MMP25-226	NM_022468	exon10	c.C1453A	p.R485S	TACTGGCGCTTCC	.	69	4	86	0	.	0	0	0	0	0
PPL	5493	bcgsc.ca	37	16	4935146	4935146	+	Silent	SNP	C	C	T	rs1049206	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PPL-95	NM_002705	exon22	c.G3510A	p.V1170V	CTCCTGCACCACC	.	100	5	128	0	C|0.673;T|0.327	0	0	0	0	0
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19056276	19056276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMC7-93	NM_024847	exon10	c.G1408C	p.D470H	TCCTGTGATGATG	.	67	27	126	0	.	0	0	0	0	0
SCNN1B	6338	broad.mit.edu	37	16	23360165	23360165	+	Missense_Mutation	SNP	C	C	G	rs35731153	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCNN1B-157	NM_000336	exon2	c.C245G	p.S82C	GCGTCTCCCTCTC	.	125	3	174	1	C|0.995;G|0.005	0	0	0	0	0
ALDOA	226	bcgsc.ca	37	16	30081476	30081476	+	Silent	SNP	C	C	T	rs77290575	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ALDOA-226	NM_001243177	exon10	c.C1200T	p.S400S	TCCGAGCGGTCAG	.	110	5	127	0	C|0.994;T|0.006	0	0	0	0	0
CTRL	1506	ucsc.edu;bcgsc.ca	37	16	67965099	67965099	+	Missense_Mutation	SNP	C	C	T	rs140026167	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTRL-90	NM_001907	exon2	c.G58A	p.G20S	GAATGCCGCAGCC	.	147	37	95	0	C|0.994;T|0.006	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	5	5	0	0	C|0.846;T|0.154	0	0	0	0	0
MC1R	4157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89985902	89985902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_002386	exon1	c.G236A	p.C79Y	TCTGCTGCCTGGC	.	123	57	113	0	.	0	0	0	0	0
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7499311	7499311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_004860	exon8	c.C662A	p.T221K	TTGCTTGTCTGAA	.	99	40	103	0	.	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	6	6	2	0	C|0.808;T|0.192	0	0	0	0	0
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CDC27-291	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	38	6	32	0	.	0	0	0	0	0
SPHK1	8877	hgsc.bcm.edu;bcgsc.ca	37	17	74383432	74383434	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK1-1107	NM_182965	exon6	c.1178_1180del	p.393_394del	CCATGGAGAAGGG	.	163	0	231	1	.	0	0	0	0	0
MYADML2	255275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79899111	79899111	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYADML2-68	NM_001145113	exon3	c.C507T	p.I169I	CTGGACGATCTTG	.	107	37	62	0	.	0	0	0	0	0
OSBPL1A	114876	ucsc.edu	37	18	21883679	21883679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OSBPL1A-94	NM_080597	exon14	c.G1096T	p.A366S	ACTGTGCTTTCTG	.	39	4	59	0	.	0	0	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu	37	18	43508849	43508849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EPG5-580	NM_020964	exon13	c.G2539A	p.D847N	CCTGGTCAATGGT	.	43	4	49	0	.	0	0	0	0	0
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	POLI-229	NM_007195	exon1	c.42_44del	p.14_15del	CGGCGGCGACGAC	.	46	17	4	0	.	0	0	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501714	501714	+	Missense_Mutation	SNP	C	C	A	rs78071082	bycluster;byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MADCAM1-90	NM_130760	exon4	c.C713A	p.P238Q	CCTCCCCGGAGTC	.	233	16	122	1	A|0.000;C|1.000;T|0.000	0	0	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8604874	8604874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO1F-93	NM_012335	exon16	c.G1649A	p.G550E	TTGTCTCCATCCA	.	69	12	52	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	8	6	0	0	A|0.360;G|0.640	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	7	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	7	0	0	A|0.065;C|0.935	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	6	6	0	0	G|0.540;T|0.460	0	0	0	0	0
ZNF296	162979	hgsc.bcm.edu	37	19	45579614	45579614	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF296-90	NM_145288	exon1	c.C18G	p.A6A	GCTGCCGGCCTTG	.	9	8	1	0	.	0	0	0	0	0
SYMPK	8189	broad.mit.edu	37	19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SYMPK-91	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG	.	118	23	85	9	.	0	0	0	0	0
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131974	49131974	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK2-658	NM_020126	exon7	c.C909G	p.N303K	GCTCAACTGCTCA	.	161	39	102	0	.	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	5	5	0	0	A|0.464;G|0.536	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49573389	49573389	+	Silent	SNP	G	G	A	rs145070146		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCNA7-90	NM_031886	exon2	c.C1302T	p.D434D	CTCCCCGTCCACC	.	192	39	145	0	G|1.000;A|0.000	0	0	0	0	0
KLK7	5650	hgsc.bcm.edu;bcgsc.ca	37	19	51485656	51485656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLK7-650	NM_001243126	exon2	c.C127A	p.H43N	TGCCATGGTGCCC	.	65	4	63	0	.	0	0	0	0	0
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55105904	55105904	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRA1-93	NM_006863	exon3	c.35-2A>G	.	TCTTCCAGGGCTG	.	188	27	111	0	.	0	0	0	0	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55144484	55144484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRB1-137	NM_001081637	exon7	c.G976T	p.V326F	GACAGAGTCTCCC	.	184	41	102	0	.	0	0	0	0	0
KIR2DL1	3802	broad.mit.edu;ucsc.edu	37	19	55286648	55286648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KIR2DL1-90	NM_014218	exon4	c.G402T	p.Q134H	AGCCCAGCTGGGC	.	60	9	48	0	.	0	0	0	0	0
ZNF671	79891	broad.mit.edu	37	19	58232936	58232936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF671-91	NM_024833	exon4	c.T518G	p.L173W	TCTTTCAATATTG	.	238	4	178	0	.	0	0	0	0	0
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24086377	24086377	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATAD2B-68	NM_001242338	exon12	c.C1353G	p.A451A	TGCTCTGGCAACC	.	99	49	113	0	.	0	0	0	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29445209	29445209	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ALK-3833	NM_004304	exon23	c.3515+1G>A	.	GCTTTACCTGATG	.	48	15	69	0	.	0	0	0	0	0
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86315734	86315734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	POLR1A-93	NM_015425	exon6	c.G685A	p.A229T	CCATGGCTGGAAA	.	125	37	95	1	.	0	0	0	0	0
GPAT2	150763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96697819	96697819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPAT2-90	NM_207328	exon3	c.G139C	p.V47L	GACCCACAAAGGG	.	692	133	505	1	.	0	0	0	0	0
AFF3	3899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100210195	100210195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AFF3-230	NM_001025108	exon14	c.C2003G	p.S668C	ACGGAGGAGCGCA	.	92	18	60	1	.	0	0	0	0	0
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103006523	103006523	+	Missense_Mutation	SNP	G	G	T	rs149204147	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IL18R1-93	NM_003855	exon8	c.G957T	p.M319I	AGACATGGCTGAT	.	113	34	116	0	G|1.000;A|0.000	0	0	0	0	0
FBLN7	129804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112944994	112944994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FBLN7-69	NM_153214	exon8	c.G1231C	p.D411H	GAGGTGGACGTCG	.	88	30	56	1	.	0	0	0	0	0
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	122205879	122205879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLASP1-91	NM_001207051	exon18	c.A1714T	p.S572C	TAGGACTTCTTTT	.	43	17	59	0	.	0	0	0	0	0
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128347750	128347750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO7B-47	NM_001080527	exon16	c.C1938A	p.N646K	GACCAACTGCCAG	.	168	38	141	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179621430	179621430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TTN-636	NM_001267550	exon46	c.C10773A	p.S3591R	TATTTTGCTCTCC	.	96	7	63	0	.	0	0	0	0	0
PARD3B	117583	bcgsc.ca	37	2	206364737	206364737	+	Silent	SNP	T	T	C	rs10197347	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PARD3B-140	NM_152526	exon20	c.T2976C	p.S992S	GCCATCTGAGTAT	.	110	5	155	1	T|0.587;C|0.413	0	0	0	0	0
CRYGB	1419	bcgsc.ca	37	2	209007559	209007559	+	Missense_Mutation	SNP	T	T	G	rs796287	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CRYGB-90	NM_005210	exon3	c.A331C	p.I111L	CAGAGATACAGTC	.	151	6	195	0	G|0.655;N|0.000	0	0	0	0	0
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209216103	209216103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIKFYVE-583	NM_015040	exon38	c.C5639G	p.P1880R	AAATGCCTCGTCT	.	49	18	79	0	.	0	0	0	0	0
TMEM169	92691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216960742	216960742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMEM169-69	NM_001142310	exon3	c.G56A	p.G19D	ACCAGGGCTCTCT	.	72	32	63	0	.	0	0	0	0	0
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34776286	34776286	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EPB41L1-93	NM_001258329	exon10	c.C891T	p.D297D	CATCGACATCATG	.	180	43	128	1	.	0	0	0	0	0
SLA2	84174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35242711	35242711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLA2-90	NM_032214	exon7	c.A662G	p.D221G	TACCTGTCCAGCT	.	190	33	114	0	.	0	0	0	0	0
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36869832	36869832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KIAA1755-95	NM_001029864	exon3	c.C701A	p.A234D	CCCTTGGCCAAAC	.	105	35	105	1	.	0	0	0	0	0
CTSA	5476	hgsc.bcm.edu;broad.mit.edu	37	20	44520258	44520258	+	Frame_Shift_Del	DEL	G	G	-	rs3080212	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.105delG	p.L35fs	GCTGCTGCTGCTA	.	71	19	8	0	-|0.668;CTG|0.332	0	0	0	0	0
CTSA	5476	hgsc.bcm.edu;broad.mit.edu	37	20	44520260	44520261	+	Frame_Shift_Del	DEL	TG	TG	-	rs79061377	bycluster;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.107_108del	p.36_36del	TGCTGCTGCTAGT	.	71	18	9	0	.	0	0	0	0	0
ETS2	2114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40188949	40188949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ETS2-849	NM_001256295	exon7	c.G943T	p.E315X	AAGACAGAAGATC	.	66	24	104	0	.	0	0	0	0	0
GNB1L	54584	broad.mit.edu	37	22	19808792	19808792	+	Silent	SNP	G	G	A	rs115309470	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GNB1L-290	NM_053004	exon3	c.C87T	p.C29C	TCCTTCGCAGAAG	.	93	3	97	0	G|0.998;A|0.002	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	rs9680797	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCARF2-341	NM_153334	exon11	c.C1982T	p.P661L	TCAGGTGGCGGCG	.	8	8	3	0	G|0.977;A|0.023	0	0	0	0	0
NEFH	4744	bcgsc.ca	37	22	29886043	29886043	+	Missense_Mutation	SNP	A	A	C	rs165602	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NEFH-90	NM_021076	exon4	c.A2414C	p.E805A	TGAAGGAGGATGC	.	81	5	79	0	A|0.871;C|0.129	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	5	0	0	A|0.354;G|0.646	0	0	0	0	0
TRIOBP	11078	broad.mit.edu	37	22	38131006	38131006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIOBP-136	NM_001039141	exon9	c.C4663A	p.P1555T	AGGCGACCCGAGC	.	59	12	46	2	.	0	0	0	0	0
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41075522	41075522	+	Missense_Mutation	SNP	A	A	G	rs147389509	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MCHR1-90	NM_005297	exon1	c.A73G	p.T25A	CAGGCTACGGAGG	.	145	40	111	0	A|1.000;G|0.000	0	0	0	0	0
BRD1	23774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50198009	50198009	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BRD1-91	NM_014577	exon3	c.1368-1G>T	.	TTTAACCTAAAAC	.	150	55	189	0	.	0	0	0	0	0
CHKB	1120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51019907	51019907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHKB-90	NM_005198	exon4	c.C523A	p.H175N	TGCCATGAAATTG	.	79	42	105	0	.	0	0	0	0	0
SETMAR	6419	broad.mit.edu	37	3	4355141	4355141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SETMAR-91	NM_006515	exon2	c.C716T	p.S239L	TTGACTCAATGGT	.	206	5	227	0	.	0	0	0	0	0
KCNH8	131096	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19554465	19554465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCNH8-524	NM_144633	exon13	c.G2083T	p.E695X	TAGTCAGAGCCCA	.	141	51	171	1	.	0	0	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38966970	38966970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCN11A-99	NM_014139	exon5	c.C648G	p.I216M	TAGTTTGATGGTG	.	177	85	240	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0
CHMP2B	25978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	87294944	87294944	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP2B-229	NM_014043	exon3	c.G207A	p.R69R	TCTACGGAAACAG	.	303	109	263	0	.	0	0	0	0	0
MYLK	4638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123419214	123419214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYLK-365	NM_053025	exon18	c.C3101A	p.T1034N	TTCAGGGTCTCAG	.	151	33	144	2	.	0	0	0	0	0
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160148934	160148934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SMC4-291	NM_005496	exon19	c.G3055C	p.E1019Q	AAACTTGAACAAA	.	227	54	192	0	.	0	0	0	0	0
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180687983	180687983	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FXR1-153	NM_001013438	exon15	c.T1440A	p.L480L	CTTACTTGATAAT	.	232	26	224	0	.	0	0	0	0	0
DGKG	1608	hgsc.bcm.edu	37	3	185985480	185985480	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DGKG-714	NM_001346	exon13	c.C1203A	p.I401I	CCGGGTGATGGGG	.	63	4	61	0	.	0	0	0	0	0
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193032830	193032830	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATP13A5-144	NM_198505	exon18	c.T2089C	p.L697L	TTTTCAAGCGATT	.	68	23	41	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195511814	195511814	+	Missense_Mutation	SNP	T	T	C	rs72499650		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MUC4-90	NM_018406	exon2	c.A6637G	p.S2213G	AAGGGCTGGTGAC	.	214	7	202	2	T|0.500;C|0.500	0	0	0	0	0
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	517287	517289	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGG-92	NM_001127178	exon9	c.1654_1656del	p.552_552del	CTAGACCTTCTTA	.	248	64	212	0	.	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	8	8	0	0	G|0.853;T|0.147	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DSPP-90	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	569	157	782	16	.	0	0	0	0	0
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152043252	152043252	+	Missense_Mutation	SNP	C	C	G	rs199694166	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SH3D19-92	NM_001009555	exon21	c.G2364C	p.Q788H	GCTGATCTGTAGA	.	49	19	77	0	C|0.999;A|0.001	0	0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155411939	155411939	+	Missense_Mutation	SNP	A	A	C	rs17373874	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DCHS2-94	NM_001142552	exon1	c.T569G	p.V190G	TGGGCAACTGGCA	.	147	4	111	1	A|0.633;C|0.367	0	0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155411948	155411948	+	Missense_Mutation	SNP	C	C	A	rs184619033		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DCHS2-94	NM_001142552	exon1	c.G560T	p.R187L	GGCAGGCGGAAGG	.	152	3	112	0	C|0.997;A|0.003	0	0	0	0	0
PDCD6	10016	broad.mit.edu	37	5	311455	311455	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PDCD6-290	NM_013232	exon5	c.G415C	p.D139H	AAGTTTGACAGGC	.	157	5	176	0	.	0	0	0	0	0
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34913589	34913589	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAD1-227	NM_002853	exon3	c.C293G	p.S98X	GGACTTGATCCAA	.	232	52	195	0	.	0	0	0	0	0
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38427121	38427121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EGFLAM-187	NM_001205301	exon14	c.G1821C	p.L607F	CACCTTGACCATT	.	61	27	46	0	.	0	0	0	0	0
CARD6	84674	hgsc.bcm.edu;broad.mit.edu	37	5	40843294	40843294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CARD6-230	NM_032587	exon2	c.324delG	p.M108fs	ATCTATGGGGGCA	.	54	13	28	0	.	0	0	0	0	0
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60067796	60067796	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ELOVL7-90	NM_001104558	exon3	c.A189G	p.E63E	CTTGAGTTCAAAG	.	219	61	176	0	.	0	0	0	0	0
MAP1B	4131	hgsc.bcm.edu;bcgsc.ca	37	5	71492991	71492991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.3809delC	p.T1270fs	AAAAGACCCCCCT	.	104	35	99	1	.	0	0	0	0	0
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71495181	71495181	+	Missense_Mutation	SNP	C	C	A	rs113459978	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.C5999A	p.T2000K	GCCACACACTTGG	.	61	21	77	0	C|0.500;T|0.500	0	0	0	0	0
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78671991	78671991	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HOMER1-90	NM_004272	exon9	c.C906C	p.L302L	TTGTCCCTCCAGG	.	88	20	93	0	.	0	0	0	0	0
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118844896	118844896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HSD17B4-92	NM_001199291	exon17	c.G1469A	p.G490D	TTGTTGGCTCTGG	.	50	4	40	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	5	5	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHB6	56130	hgsc.bcm.edu	37	5	140531553	140531553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHB6-91	NM_018939	exon1	c.A1715G	p.E572G	GCACCGAGCTGGT	.	17	7	2	0	.	0	0	0	0	0
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140579540	140579540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHB11-96	NM_018931	exon1	c.C193T	p.R65W	GGGGCTCGGGTGG	.	62	17	33	0	.	0	0	0	0	0
PCDHGA5	56110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140746167	140746167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHGA5-35	NM_032054	exon1	c.T2270G	p.V757G	ACGAGGTCTCCCT	.	169	48	168	4	.	0	0	0	0	0
COL23A1	91522	broad.mit.edu	37	5	177673297	177673297	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	COL23A1-91	NM_173465	exon24	c.C1371A	p.G457G	CGGTGGGCCAACT	.	112	4	110	0	.	0	0	0	0	0
FLT4	2324	ucsc.edu;bcgsc.ca	37	5	180048131	180048131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FLT4-1490	NM_182925	exon14	c.C2142A	p.D714E	CCTCTCGTCTTTG	.	290	71	200	3	.	0	0	0	0	0
FOXC1	2296	broad.mit.edu	37	6	1612237	1612237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FOXC1-227	NM_001453	exon1	c.C1557A	p.N519K	CTTGAACAACTCT	.	159	14	141	8	.	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	8	7	0	0	G|0.546;T|0.454	0	0	0	0	0
NEDD9	4739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	11185653	11185653	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NEDD9-226	NM_001142393	exon8	c.C2247A	p.V749V	GAGGATGACAAAC	.	201	71	227	0	.	0	0	0	0	0
TRIM39	56658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30303702	30303702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIM39-161	NM_021253	exon5	c.G730C	p.A244P	CACTTGGCTGCCG	.	123	15	98	1	.	0	0	0	0	0
FKBPL	63943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32096557	32096557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FKBPL-204	NM_022110	exon2	c.A1001T	p.K334M	TGGTTCTTCCCCT	.	213	40	130	0	.	0	0	0	0	0
GLP1R	2740	bcgsc.ca	37	6	39033549	39033549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GLP1R-659	NM_002062	exon4	c.T346A	p.S116T	GACAACTCCAGCC	.	203	6	134	0	.	0	0	0	0	0
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	40399886	40399886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRFN2-93	NM_020737	exon2	c.G967C	p.V323L	GGGCTACCCAGTG	.	75	6	43	0	.	0	0	0	0	0
PTCRA	171558	hgsc.bcm.edu	37	6	42893140	42893140	+	Missense_Mutation	SNP	G	G	A	rs111782749	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PTCRA-92	NM_001243168	exon4	c.G611A	p.R204Q	GCCTGCGAGCCCT	.	41	24	0	0	G|0.995;A|0.005	0	0	0	0	0
KLHDC3	116138	broad.mit.edu;bcgsc.ca	37	6	42985302	42985302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLHDC3-91	NM_057161	exon3	c.G200A	p.R67H	CCATCCGTGGGCA	.	258	13	203	1	.	0	0	0	0	0
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754247	49754247	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PGK2-91	NM_138733	exon1	c.A654G	p.A218A	CTTGTCTGCCACT	.	356	71	241	0	.	0	0	0	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55300530	55300530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HMGCLL1-94	NM_019036	exon10	c.G1043T	p.G348V	AAGTCACCAGCTT	.	126	3	74	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56434803	56434805	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DST-523	NM_015548	exon35	c.5858_5860del	p.1953_1954del	TTACAGCTTCTTT	.	36	11	39	0	.	0	0	0	0	0
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76022190	76022190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FILIP1-94	NM_015687	exon5	c.C3358G	p.P1120A	CACCAGGCCGTGA	.	435	83	302	0	.	0	0	0	0	0
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105219214	105219214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HACE1-663	NM_020771	exon19	c.A2065C	p.K689Q	AATTTTTCGCATA	.	89	36	69	0	.	0	0	0	0	0
RSPO3	84870	broad.mit.edu	37	6	127516969	127516969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RSPO3-90	NM_032784	exon5	c.636delA	p.G212fs	TTCAGGAAAAAAA	.	5	2	5	0	.	0	0	0	0	0
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135726087	135726087	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AHI1-227	NM_001134830	exon21	c.2988+2T>G	.	CTACTTACTTTTG	.	49	14	54	0	.	0	0	0	0	0
MAP3K4	4216	broad.mit.edu;bcgsc.ca	37	6	161527654	161527654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP3K4-548	NM_005922	exon20	c.G3965A	p.C1322Y	AAGTTTGTGATAC	.	176	8	255	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5410916	5410916	+	Silent	SNP	G	G	C	rs10215902		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TNRC18-46	NM_001080495	exon11	c.C3309G	p.A1103A	GGCGGCGGCCGTG	.	4	4	1	0	G|0.900;C|0.100	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TNRC18-46	NM_001080495	exon5	c.C1938T	p.G646G	GCCGCCGCCCGCT	.	11	11	0	0	G|0.797;A|0.203	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	9	9	0	0	G|0.889;C|0.111	0	0	0	0	0
NT5C3A	0	ucsc.edu;bcgsc.ca	37	7	33054388	33054388	+	Missense_Mutation	SNP	T	T	C	rs79747830	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001002010	exon9	c.A965G	p.D322G	GATTCATCTTGTA	.	34	8	45	0	T|0.969;C|0.031	0	0	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44714133	44714133	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OGDH-228	NM_002541	exon7	c.C912T	p.Y304Y	GGACTACGTGATC	.	172	63	279	0	.	0	0	0	0	0
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91793258	91793258	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001161528	exon1	c.T1259G	p.L420X	TTTCTTAAATTGT	.	61	31	49	0	.	0	0	0	0	0
ASB4	51666	broad.mit.edu;bcgsc.ca	37	7	95157438	95157438	+	Silent	SNP	C	C	G	rs142833028	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ASB4-226	NM_016116	exon3	c.C801G	p.L267L	CGTGCTCATGCAC	.	212	10	194	0	C|1.000;T|0.000	0	0	0	0	0
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139737565	139737565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PARP12-525	NM_022750	exon7	c.C1274T	p.A425V	AAGGTGGCTGCCT	.	68	49	186	0	.	0	0	0	0	0
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698393	150698393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NOS3-1011	NM_001160111	exon10	c.G1308T	p.K436N	GCAGAAGGCCAGG	.	19	12	45	0	.	0	0	0	0	0
MLL3	58508	bcgsc.ca	37	7	151932990	151932990	+	Missense_Mutation	SNP	C	C	T	rs76844681		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL3-1398	NM_170606	exon16	c.G2681A	p.R894Q	GGTCTCCGCTTTC	.	103	12	186	1	C|0.999;T|0.001	0	0	0	0	0
HTR5A	3361	broad.mit.edu	37	7	154862947	154862947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HTR5A-155	NM_024012	exon1	c.T338G	p.L113R	GGAGGCTGTGCCA	.	17	2	8	0	.	0	0	0	0	0
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42294695	42294695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC20A2-92	NM_001257181	exon8	c.C1335G	p.I445M	CGCCTCGATCTCC	.	104	17	37	0	.	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	18	4	3	0	T|0.642;G|0.358	0	0	0	0	0
ZNF704	619279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81553604	81553604	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF704-90	NM_001033723	exon9	c.C1236T	p.D412D	CTCTCAGTCGAGG	.	118	27	43	0	.	0	0	0	0	0
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82670423	82670423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP4C-92	NM_152284	exon4	c.A530G	p.N177S	AATTAAATAAGAA	.	177	39	114	0	.	0	0	0	0	0
MTSS1	9788	broad.mit.edu	37	8	125568471	125568471	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MTSS1-91	NM_014751	exon13	c.1404+2T>G	.	AGCATCACCCTGG	.	100	11	106	6	.	0	0	0	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142506432	142506432	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	.	.	.	.	TGTAGGCTTCCCC	.	167	47	144	0	.	0	0	0	0	0
RHPN1	114822	broad.mit.edu	37	8	144459625	144459625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RHPN1-67	NM_052924	exon4	c.G381T	p.K127N	GCTGAAGGTAGGT	.	95	4	103	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	10	5	1	0	A|0.536;G|0.464	0	0	0	0	0
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13192144	13192144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MPDZ-231	NM_003829	exon15	c.G1954T	p.E652X	TTAGCTCAATATC	.	110	21	72	0	.	0	0	0	0	0
SH3GL2	6456	broad.mit.edu;bcgsc.ca	37	9	17795615	17795615	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SH3GL2-91	NM_003026	exon9	c.T933C	p.F311F	GGGATTTAAAGAG	.	309	12	227	0	.	0	0	0	0	0
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409580	21409580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IFNA8-90	NM_002170	exon1	c.G405A	p.M135I	CCTGATGTACGAG	.	215	47	110	0	.	0	0	0	0	0
PRSS3	5646	broad.mit.edu	37	9	33794840	33794840	+	Silent	SNP	G	G	A	rs10117993	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRSS3-90	NM_001197097	exon2	c.G51A	p.A17A	GAGTGCGCCATTG	.	184	7	138	2	G|0.995;A|0.005	0	0	0	0	0
FAM205A	259308	broad.mit.edu	37	9	34725742	34725742	+	Missense_Mutation	SNP	T	T	C	rs62547039	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001141917	exon4	c.A1495G	p.M499V	GAGACATCCAGTT	.	105	4	71	1	T|0.296;C|0.704	0	0	0	0	0
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35092629	35092629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGO-290	NM_001201484	exon8	c.G1255A	p.A419T	GTGTCGCCTCAGC	.	81	21	88	0	.	0	0	0	0	0
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78910311	78910311	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCSK5-93	NM_001190482	exon26	c.G3306A	p.E1102E	TGAAGAGGGCTTC	.	266	82	267	0	.	0	0	0	0	0
SHC3	53358	hgsc.bcm.edu	37	9	91793225	91793225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SHC3-415	NM_016848	exon1	c.G151A	p.E51K	GCGCCTCGCCGGA	.	19	14	2	0	.	0	0	0	0	0
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125562456	125562458	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	ACA	ACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR1K1-69	NM_080859	exon1	c.55_57del	p.19_19del	GGACTGACAACAA	.	196	42	125	0	.	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	133556750	133556750	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRDM12-90	NM_021619	exon5	c.G798A	p.T266T	CCACACGCTGGAC	.	122	27	27	0	.	0	0	0	0	0
SLC2A6	11182	broad.mit.edu;bcgsc.ca	37	9	136337148	136337148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC2A6-90	NM_017585	exon10	c.C1519T	p.R507C	CCTAGCGCAAGAA	.	135	6	65	0	.	0	0	0	0	0
PAEP	5047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138453660	138453660	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PAEP-68	NM_002571	exon1	c.C13T	p.L5L	TGCCTCCTGCTCA	.	205	45	115	0	.	0	0	0	0	0
WWC3	55841	broad.mit.edu	37	X	10035510	10035510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	WWC3-134	NM_015691	exon3	c.A200G	p.D67G	AGGATGACAGCCG	.	350	7	317	0	.	0	0	0	0	0
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	19425347	19425347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP3K15-335	NM_001001671	exon13	c.T1803A	p.D601E	AAAGTCATCAGAA	.	251	21	164	0	.	0	0	0	0	0
PHEX	5251	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	22117127	22117127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PHEX-132	NM_000444	exon9	c.G937C	p.D313H	CAGTTCGACTGGC	.	76	21	59	0	.	0	0	0	0	0
KLHL15	80311	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24006591	24006591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLHL15-131	NM_030624	exon4	c.G1262T	p.G421V	ACTGTCCCCTCAT	.	272	72	228	1	.	0	0	0	0	0
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	37026574	37026574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G91A	p.A31T	TACTTCGCGAAGC	.	423	28	368	0	.	0	0	0	0	0
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37028029	37028029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G1546C	p.E516Q	CCTTCTGAGACTG	.	80	29	83	0	.	0	0	0	0	0
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41586498	41586498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR82-110	NM_080817	exon3	c.C219G	p.I73M	GAGTATCTATTTC	.	130	41	120	0	.	0	0	0	0	0
PORCN	64840	broad.mit.edu	37	X	48368343	48368343	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PORCN-133	NM_203475	exon1	c.C135G	p.L45L	GAGGCTCGGTAAG	.	108	12	116	7	.	0	0	0	0	0
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53284064	53284064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IQSEC2-178	NM_001111125	exon4	c.C1049G	p.A350G	CTGGCAGCCCTGC	.	182	45	144	0	.	0	0	0	0	0
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53616611	53616611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HUWE1-280	NM_031407	exon36	c.G4357A	p.E1453K	GCAGCTCATCAAG	.	225	56	217	1	.	0	0	0	0	0
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107447550	107447550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	COL4A6-199	NM_001847	exon12	c.G783T	p.K261N	CACTACCTTGGAT	.	35	16	49	0	.	0	0	0	0	0
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128722897	128722897	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OCRL-206	NM_000276	exon22	c.C2376A	p.L792L	ACTGCTCATTTTC	.	62	8	73	0	.	0	0	0	0	0
APLN	8862	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128782651	128782651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	APLN-108	NM_017413	exon2	c.C186A	p.F62L	GCGGCGGAATTTC	.	277	92	297	3	.	0	0	0	0	0
PHF6	84295	broad.mit.edu;bcgsc.ca	37	X	133547878	133547878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PHF6-131	NM_032335	exon7	c.G614T	p.S205I	GAAGCAGCCCTAG	.	312	8	336	0	.	0	0	0	0	0
TCHH	7062	broad.mit.edu	37	1	152084175	152084176	+	In_Frame_Ins	INS	-	-	TGCTGCTCGCGCCTCTCC	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TCHH-72	NM_007113	exon3	c.1518_1519insGGAGAGGCGCGAGCAGCA	p.Q506delinsQERREQQ	CCTTAGTTGCTGC	.	70	16	44	0	.	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu;broad.mit.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCCGTGGCTCC	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCCGTGGCTCC	p.G43delinsGGRGS	CTGTGGAGGCTGT	.	28	20	5	0	.	0	0	0	0	0
POLG	5428	broad.mit.edu	37	15	89876827	89876828	+	In_Frame_Ins	INS	-	-	TGC	rs41550117	bycluster	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	POLG-228	NM_001126131	exon2	c.159_160insGCA	p.Q53delinsQQ	CTGCTGTTGCTGC	.	15	5	11	0	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56939705	56939706	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAX-90	NM_013435	exon2	c.431_432insA	p.T144fs	TACGTGGTGAAAG	.	151	55	152	0	.	0	0	0	0	0
PANX2	56666	broad.mit.edu	37	22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PANX2-131	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG	.	89	15	29	0	.	0	0	0	0	0
OR6C1	390321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55714972	55714973	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR6C1-69	NM_001005182	exon1	c.G590T	p.G197L	TGATGGGATTTTC	.	130	10	118	0	.	0	0	0	0	0
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90660029	90660030	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BACH2-231	NM_021813	exon7	c.G1795A	p.A599I	TGTCTGCTTCCGA	.	241	0	98	0	.	0	0	0	0	0
