Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	hgsc.bcm.edu	37	1	877831	877831	+	Missense_Mutation	SNP	T	T	C	rs6672356		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SAMD11-90	NM_152486	exon10	c.T1027C	p.W343R	TTCGCCTGGCAGC	.	6	6	0	0	T|0.004;C|0.996	0	0	0	0	0
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12294377	12294377	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	VPS13D-95	NM_015378	exon2	c.C54G	p.V18V	ATATGTCAATAAC	.	172	56	122	0	.	1	1	0	0	0
PRAMEF4	400735	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12939472	12939472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRAMEF4-45	NM_001009611	exon4	c.G1330A	p.V444M	CCCTCACTCTGTT	.	1237	116	776	0	.	0	0	0	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	14	7	0	0	G|0.647;A|0.353	0	0	0	0	0
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24385424	24385424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MYOM3-93	NM_152372	exon36	c.T4040A	p.M1347K	TCTTCCATGATAG	.	123	34	99	0	.	0	0	0	0	0
NIPAL3	57185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24786973	24786973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NIPAL3-90	NM_020448	exon10	c.G865C	p.A289P	GCAGGTGCAATAT	.	129	51	86	0	.	0	0	0	0	0
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32209956	32209956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BAI2-526	NM_001703	exon6	c.G925A	p.D309N	CCGGGTCGCCTAC	.	86	30	32	0	.	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38230726	38230726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EPHA10-1246	NM_001099439	exon1	c.G13C	p.A5P	GACCGGCGCAGGT	.	71	28	28	0	.	0	0	0	0	0
EXO5	64789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40981323	40981323	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_022774	exon3	c.C1107G	p.V369V	CCAAGTCAAAAAA	.	119	31	71	0	.	16	10	6	0	0
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55188440	55188440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTC4-90	NM_004623	exon5	c.C562G	p.L188V	AAGCTTCTGGAAA	.	244	51	107	0	.	16	9	7	0	0
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67098763	67098763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGIP1-93	NM_032291	exon3	c.G85A	p.D29N	TCACCAGATAGAG	.	87	39	45	0	.	0	0	0	0	0
ZRANB2	9406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71538205	71538205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZRANB2-92	NM_005455	exon5	c.G328A	p.E110K	CATTTTCTCTTTC	.	161	32	165	0	.	14	11	3	0	0
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74929142	74929142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001199327	exon23	c.A2332T	p.M778L	GCAGACATGGCTT	.	191	98	107	0	.	0	0	0	0	0
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	75038013	75038013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf173-94	NM_001002912	exon14	c.G3381C	p.E1127D	TTCGTTCTCAGCA	.	18	6	24	0	.	0	0	0	0	0
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75805310	75805310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC44A5-95	NM_001130058	exon4	c.C58A	p.P20T	TCCTTGGATCACC	.	57	37	30	0	.	0	0	0	0	0
SAMD13	148418	hgsc.bcm.edu	37	1	84764249	84764249	+	Silent	SNP	A	A	G	rs1156085	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SAMD13-226	NM_001010971	exon1	c.A9G	p.G3G	GCGGGGAGGTAAG	.	49	14	7	0	A|0.979;G|0.021	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CTBS-90	NM_004388	exon1	c.92_100del	p.31_34del	CGAGCCGCAGCGC	.	75	17	15	0	.	0	0	0	0	0
KIAA1107	23285	bcgsc.ca	37	1	92632562	92632562	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	.	.	.	.	GCTAATCATCAGT	.	410	102	231	3	.	0	0	0	0	0
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	109544988	109544988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WDR47-91	NM_001142550	exon7	c.A1315G	p.R439G	TTTGCCTATAATA	.	28	13	36	0	.	0	0	0	0	0
CEPT1	10390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111725483	111725483	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEPT1-90	NM_001007794	exon7	c.C909A	p.I303I	AATGATCTACAAG	.	212	104	152	0	.	15	4	11	0	0
HSD3B1	3283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120056635	120056635	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSD3B1-92	NM_000862	exon4	c.G489A	p.E163E	TGCTGAGAAGGCT	.	76	32	87	0	.	0	0	0	0	0
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120385066	120385066	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBPF7-24	NM_001047980	exon2	c.G328C	p.E110Q	GCTCCTCAGCTTG	.	69	37	96	0	.	1	1	0	0	0
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120438173	120438173	+	Missense_Mutation	SNP	G	G	A	rs200088734	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM30-228	NM_021794	exon1	c.C787T	p.R263C	CAACGCGTATTTT	.	30	12	63	0	.	0	0	0	0	0
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150248174	150248174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf54-90	NM_024579	exon3	c.T155C	p.I52T	TCACCATTGATTA	.	199	85	124	0	.	54	53	1	0	0
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188371	152188371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HRNR-93	NM_001009931	exon3	c.C5734A	p.Q1912K	CGTGTTGTTCACC	.	3986	242	1519	1	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152276933	152276933	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.10429delC	p.R3477fs	GCCCACGGGAGGC	.	504	212	145	2	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286710	152286710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.G652A	p.E218K	TATTTTCATAATC	.	123	25	97	0	.	0	0	0	0	0
LCE4A	199834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152681610	152681610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LCE4A-90	NM_178356	exon1	c.A59G	p.K20R	TCCCCAAGTATCC	.	356	66	142	0	.	0	0	0	0	0
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152944424	152944424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRR4-68	NM_173080	exon2	c.C58A	p.Q20K	GCCCAGCAGCAGC	.	423	73	164	0	.	0	0	0	0	0
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155028275	155028275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM15-651	NM_001261464	exon7	c.G652A	p.V218M	CGGGATGTGGTAA	.	473	183	195	0	.	0	0	0	0	0
BCAN	63827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628418	156628418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BCAN-516	NM_021948	exon13	c.C2521T	p.R841C	GTGCTTCGCTACC	.	594	118	169	1	.	0	0	0	0	0
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160141399	160141399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ATP1A4-94	NM_144699	exon12	c.G1706T	p.S569I	TGCCTAGCAGCTT	.	30	25	36	0	.	0	0	0	0	0
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176852120	176852120	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASTN1-319	NM_207108	exon20	c.G3237A	p.L1079L	AAAGCTCAGCACT	.	218	82	169	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	6	0	0	T|0.229;C|0.771	0	0	0	0	0
ACBD6	84320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180471345	180471345	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACBD6-91	NM_032360	exon1	c.G57C	p.L19L	TGAGCTCAGCTCT	.	313	122	240	2	.	39	19	20	0	0
RGSL1	353299	broad.mit.edu	37	1	182443462	182443462	+	Silent	SNP	T	T	C	rs649437	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RGSL1-226	NM_001137669	exon6	c.T1216C	p.L406L	CAGGACTTGCAGC	.	307	7	208	2	T|0.553;C|0.447	0	0	0	0	0
RNF2	6045	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185069018	185069018	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RNF2-658	NM_007212	exon6	c.C833G	p.S278X	GTGAATCAAACCA	.	334	121	254	2	.	15	13	2	0	0
RNPEP	6051	hgsc.bcm.edu	37	1	201951890	201951890	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RNPEP-91	NM_020216	exon1	c.G96T	p.R32R	CTTCCGGGCCTTT	.	50	4	10	0	.	1	1	0	0	0
GPATCH2	55105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217793701	217793701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPATCH2-91	NM_018040	exon2	c.G197T	p.R66M	CTTTTCCTTGCCT	.	85	60	58	0	.	2	0	2	0	0
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220835222	220835222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARK1-802	NM_018650	exon18	c.G2102T	p.R701L	CTTTGCGGTTCAC	.	191	147	163	1	.	9	0	9	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228471220	228471220	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OBSCN-403	NM_001271223	exon38	c.C10041T	p.F3347F	CTGCTTCACAGAG	.	318	102	181	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	9	9	0	0	C|0.643;T|0.357	0	0	0	0	0
KIF26B	55083	bcgsc.ca	37	1	245582995	245582995	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIF26B-25	NM_018012	exon4	c.G1114C	p.V372L	TCCTGCGTGGCCA	.	361	272	225	4	.	0	0	0	0	0
OR2W5	441932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247654468	247654468	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR2W5-115	NM_001004698	exon1	c.C39T	p.I13I	ATTCATCCTGGTG	.	143	106	88	0	.	0	0	0	0	0
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5979171	5979172	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FBXO18-228	NM_032807	exon22	c.3213_3214del	p.1071_1072del	GCAGGTGCGCGCC	.	239	76	181	0	.	0	0	0	0	0
FAM171A1	221061	broad.mit.edu	37	10	15326029	15326029	+	Missense_Mutation	SNP	G	G	T	rs76275809	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM171A1-138	NM_001010924	exon2	c.C173A	p.T58N	TGGTTGGTGAAGA	.	114	3	78	0	G|0.500;C|0.500	0	0	0	0	0
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	15761654	15761654	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ITGA8-230	NM_003638	exon1	c.C117T	p.F39F	CAGGTTGAACGCC	.	44	14	16	0	.	0	0	0	0	0
WDFY4	57705	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50184861	50184861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WDFY4-22	NM_020945	exon59	c.C9128A	p.A3043E	CCTGTGCGGGAGC	.	208	80	135	1	.	1	1	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61847904	61847904	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK3-107	NM_001149	exon8	c.942+1G>T	.	ACATTACCTGGAG	.	58	24	47	0	.	0	0	0	0	0
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71018532	71018532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HKDC1-95	NM_025130	exon15	c.G2033A	p.G678E	TTCTAGGAACAGG	.	99	30	79	0	.	0	0	0	0	0
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84733611	84733611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NRG3-522	NM_001010848	exon7	c.C1352A	p.P451H	TCGGCCCCCAGTC	.	298	129	159	1	.	0	0	0	0	0
LRIT2	340745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85982398	85982398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRIT2-92	NM_001017924	exon3	c.G931T	p.E311X	CCAGCTCTGACAG	.	364	137	247	0	.	0	0	0	0	0
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96084321	96084321	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCE1-229	NM_016341	exon31	c.G6717A	p.V2239V	GCAGGTGCAGGTA	.	90	33	72	0	.	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001134363	exon1	c.G90A	p.R30R	TGCCCGGGCGTCC	.	22	17	0	0	G|0.808;A|0.192	0	0	0	0	0
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118451896	118451896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSPA12A-206	NM_025015	exon6	c.C629G	p.P210R	TTGGCCGGCTGCT	.	141	57	75	0	.	1	1	0	0	0
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124457937	124457937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C10orf120-91	NM_001010912	exon3	c.G320C	p.R107T	AGCATTCTGCATT	.	184	68	106	0	.	0	0	0	0	0
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129903549	129903549	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MKI67-519	NM_002417	exon13	c.G6555A	p.K2185K	TTTTCCCTTAGGA	.	164	52	167	1	.	8	2	6	0	0
ZNF511	118472	hgsc.bcm.edu	37	10	135122507	135122507	+	Silent	SNP	G	G	A	rs3008357		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF511-90	NM_145806	exon1	c.G60A	p.P20P	GGAGCCGCTGCCT	.	9	6	1	0	G|0.816;A|0.184	1	1	0	0	0
ECHS1	1892	hgsc.bcm.edu	37	10	135186834	135186834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ECHS1-90	NM_004092	exon1	c.G4T	p.A2S	GGGCGGCCATGGC	.	41	28	0	0	.	19	4	15	0	0
MUC2	4583	bcgsc.ca	37	11	1093022	1093022	+	Missense_Mutation	SNP	C	C	T	rs200733547		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C4841T	p.T1614M	CCACTACGGTGAC	.	165	22	106	2	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093254	1093254	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C5073T	p.T1691T	ACCCACCGGCACA	.	149	12	86	4	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093299	1093299	+	Silent	SNP	G	G	A	rs113492997	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.G5118A	p.T1706T	CACTACGGTGACC	.	163	6	118	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	128	16	31	0	.	0	0	0	0	0
BRSK2	9024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1472024	1472024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BRSK2-333	NM_001256630	exon14	c.G1633T	p.V545F	CTGCAAGGTGAGT	.	361	155	186	1	.	0	0	0	0	0
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3752722	3752722	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NUP98-703	NM_005387	exon14	c.C1680A	p.V560V	TGGCCGGACTCTA	.	133	56	108	0	.	2	1	1	0	0
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4674519	4674519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR51E1-114	NM_152430	exon2	c.G763T	p.V255L	TTCTATGTACCTT	.	147	41	107	0	.	0	0	0	0	0
OR52N2	390077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5842285	5842285	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52N2-70	NM_001005174	exon1	c.C720T	p.F240F	AGCCTTCAGCACC	.	294	101	205	1	.	0	0	0	0	0
OR52E6	390078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5862980	5862980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52E6-68	NM_001005167	exon1	c.G148T	p.V50L	GGATCACAAAGAA	.	257	61	157	0	.	0	0	0	0	0
OR52L1	338751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6007764	6007764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52L1-91	NM_001005173	exon1	c.C397A	p.L133I	CCACAAGTACCCC	.	242	75	154	0	.	0	0	0	0	0
SMPD1	6609	hgsc.bcm.edu	37	11	6413009	6413009	+	Silent	SNP	A	A	C	rs2682091	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SMPD1-90	NM_000543	exon2	c.A714C	p.A238A	GCCCGCATCCCGG	.	62	5	11	0	A|0.960;G|0.040	16	15	1	0	0
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6554962	6554962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNHD1-24	NM_144666	exon14	c.G2557C	p.V853L	GAATACGTACGGG	.	329	122	245	1	.	0	0	0	0	0
CALCA	796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14991506	14991506	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CALCA-514	NM_001033953	exon3	c.C202G	p.Q68E	GCTCCTGCTCCAG	.	346	105	252	0	.	0	0	0	0	0
LUZP2	338645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	25071584	25071584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LUZP2-92	NM_001009909	exon10	c.766delC	p.P256fs	TTTAAGCCTCAAC	.	52	21	49	0	.	0	0	0	0	0
FIBIN	387758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27016195	27016195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FIBIN-68	NM_203371	exon1	c.G122T	p.G41V	CCGATGGGGACTA	.	165	66	92	0	.	0	0	0	0	0
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33363182	33363182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIPK3-336	NM_001048200	exon8	c.G1847T	p.C616F	TTGGTTGTGGTGA	.	120	40	87	0	.	1	1	0	0	0
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35547114	35547114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PAMR1-70	NM_001001991	exon1	c.C20A	p.T7K	AACTGCGTCCAGC	.	112	26	72	0	.	0	0	0	0	0
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40136500	40136500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC4C-521	NM_001258419	exon7	c.C1343T	p.T448I	GGAGTAGTGGTTG	.	227	77	171	0	.	0	0	0	0	0
OR4P4	81300	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55405833	55405833	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR4P4-68	.	.	.	.	CTGGACCATGGAA	.	19	11	30	0	.	0	0	0	0	0
OR10W1	81341	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58035112	58035112	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR10W1-69	NM_207374	exon1	c.G219T	p.L73L	GTTGGCCAGGATA	.	130	49	100	1	.	0	0	0	0	0
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	58206694	58206694	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR5B12-68	NM_001004733	exon1	c.G931T	p.G311X	TGAATCCTATAGA	.	25	10	33	0	.	0	0	0	0	0
TMEM138	51524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61133533	61133533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM138-90	NM_016464	exon3	c.G145A	p.V49I	ATTGCAGTCCTCT	.	152	47	107	0	.	55	25	30	0	0
SCGB2A1	4246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61978049	61978049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCGB2A1-90	NM_002407	exon2	c.C220G	p.L74V	AGAACTCTGAAAA	.	104	39	59	0	.	0	0	0	0	0
MUS81	80198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65631183	65631183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUS81-227	NM_025128	exon9	c.A952G	p.R318G	AATCCTAGAGACC	.	340	114	208	1	.	4	1	3	0	0
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74563036	74563036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	XRRA1-68	NM_182969	exon13	c.G1238A	p.R413Q	ATACCTCGTGTAT	.	164	68	104	0	.	0	0	0	0	0
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92534976	92534976	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT3-73	NM_001008781	exon9	c.G8797C	p.V2933L	GGGAATGTGAAGG	.	236	77	169	2	.	0	0	0	0	0
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92881943	92881943	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC36A4-93	NM_152313	exon11	c.C1275T	p.S425S	CAATGTGCTGCTG	.	201	81	168	0	.	33	22	11	0	0
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93457488	93457488	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1731-22	NM_033395	exon22	c.G6265C	p.D2089H	GATTTTGACTTAT	.	66	16	49	0	.	6	4	2	0	0
VSTM5	387804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93554296	93554296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001144871	exon2	c.C285A	p.D95E	GACTCTGTCCTTG	.	362	125	265	0	.	0	0	0	0	0
AASDHPPT	60496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105950341	105950341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AASDHPPT-90	NM_015423	exon2	c.C331A	p.H111N	ATCTCTCATCAAG	.	134	44	118	0	.	17	12	5	0	0
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	109294764	109294764	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C11orf87-92	NM_207645	exon2	c.C405G	p.P135P	GCAGCCCCGGGAC	.	67	31	18	0	.	0	0	0	0	0
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119149280	119149280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBL-4020	NM_005188	exon9	c.G1288T	p.V430L	CCCATCGTGGTAG	.	206	58	197	0	.	1	0	1	0	0
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	119510594	119510594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_203285	exon6	c.C1132A	p.P378T	TCTCCGGTGGGCT	.	119	35	97	0	.	0	0	0	0	0
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119548456	119548456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_002855	exon3	c.G542T	p.S181I	ACCACACTGGGAG	.	280	98	246	0	.	3	1	2	0	0
TMEM136	219902	hgsc.bcm.edu;bcgsc.ca	37	11	120198134	120198134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM136-91	NM_001198670	exon2	c.G50T	p.W17L	GGTTTTGGTCTTT	.	73	4	77	0	.	0	0	0	0	0
TMEM225	338661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123754008	123754008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM225-93	NM_001013743	exon4	c.T515C	p.L172P	ATGTTCAGGCAGG	.	111	35	91	0	.	0	0	0	0	0
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6639952	6639952	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NCAPD2-660	NM_014865	exon30	c.G3933A	p.Q1311Q	TAGCCAGAGAGCG	.	112	48	88	0	.	137	60	77	0	0
FAM90A1	55138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8375115	8375115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM90A1-91	NM_018088	exon7	c.C698A	p.P233H	CCCGCAGGGCTGC	.	126	25	71	0	.	0	0	0	0	0
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12814767	12814767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR19-91	NM_006143	exon4	c.T616A	p.W206R	TGTCCCAGTTGGA	.	82	36	93	0	.	0	0	0	0	0
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18435177	18435177	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIK3C2G-1312	NM_004570	exon2	c.C162T	p.Y54Y	ACACTACGAGAGT	.	80	21	92	0	.	0	0	0	0	0
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29786206	29786206	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMTC1-90	NM_001193451	exon6	c.G1002T	p.L334L	ATAGCACAGGGTC	.	233	86	131	0	.	0	0	0	0	0
PLEKHA8P1	51054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45568015	45568015	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLEKHA8P1-226	.	.	.	.	AGAAAAGTATTAC	.	169	56	163	0	.	6	4	2	0	0
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48131974	48131974	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAPGEF3-660	NM_006105	exon27	c.2455+2T>A	.	CCTCTCACCAGGG	.	204	70	141	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	227	10	243	16	G|0.998;A|0.002	1284	748	535	0	1
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52163733	52163733	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN8A-29	NM_014191	exon18	c.G3454C	p.E1152Q	CAGCCTGAGGAAT	.	200	63	124	0	.	0	0	0	0	0
FIGNL2	401720	hgsc.bcm.edu	37	12	52215211	52215211	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001013690	exon2	c.C987T	p.P329P	CTTGAGGGGGACG	.	46	24	1	0	.	0	0	0	0	0
KRT75	9119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52827680	52827680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRT75-90	NM_004693	exon1	c.C409A	p.Q137K	CGATTTGCAGGTG	.	302	84	205	1	.	0	0	0	0	0
KRT2	3849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53044230	53044230	+	Silent	SNP	C	C	A	rs141066050		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRT2-92	NM_000423	exon2	c.G693T	p.G231G	GATATACCCCTGG	.	163	54	113	2	C|1.000;A|0.000	0	0	0	0	0
SPRYD3	84926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53470946	53470946	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRYD3-90	NM_032840	exon2	c.A123T	p.R41R	CTGATATCGGAAA	.	53	13	68	0	.	3	0	3	0	0
OR9K2	441639	broad.mit.edu	37	12	55523835	55523835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR9K2-69	NM_001005243	exon1	c.G283T	p.D95Y	TTCATTGATCTTT	.	13	3	23	0	.	0	0	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66773061	66773061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIP1-494	NM_001178074	exon19	c.G2464T	p.G822C	CTTACCCACTGGC	.	152	88	155	0	.	0	0	0	0	0
RAP1B	5908	bcgsc.ca	37	12	69047921	69047921	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAP1B-1271	NM_001010942	exon5	c.C213T	p.Y71Y	TTTATACATGAAA	.	230	9	285	1	.	40	40	0	0	0
C12orf50	160419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	88381692	88381692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C12orf50-93	NM_152589	exon9	c.C752A	p.P251H	GTTGTAGGTACTA	.	111	6	117	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	9	9	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	11	11	0	0	C|0.752;T|0.248	2	0	2	0	0
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98940140	98940140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPO-93	NM_001032283	exon8	c.G994T	p.G332X	TAGGTGGGAGAAA	.	102	31	108	0	.	0	0	0	0	0
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101723173	101723173	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UTP20-155	NM_014503	exon27	c.G3363A	p.Q1121Q	TTTGCAGATACTG	.	123	45	88	0	.	0	0	0	0	0
CHPT1	56994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102117036	102117036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHPT1-90	NM_020244	exon6	c.G871C	p.E291Q	GTGTTTGAAAAGC	.	79	37	79	0	.	83	18	65	0	0
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104107546	104107546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STAB2-104	NM_017564	exon42	c.G4537T	p.E1513X	TGCCTGGGTAGGT	.	120	36	97	0	.	0	0	0	0	0
UBE3B	89910	broad.mit.edu;bcgsc.ca	37	12	109940954	109940954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UBE3B-660	NM_130466	exon14	c.C1409T	p.S470L	AGACCTCGCTGAC	.	125	49	99	2	.	3	0	3	0	0
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113348875	113348875	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OAS1-70	NM_001032409	exon3	c.T489G	p.Y163X	CGGCTATAAACCT	.	202	74	167	0	.	0	0	0	0	0
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130830339	130830339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIWIL1-92	NM_004764	exon4	c.G232A	p.E78K	TTAGCAGAGAGAG	.	142	51	103	0	.	0	0	0	0	0
TPTE2	93492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	20024411	20024411	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPTE2-92	NM_199254	exon13	c.C876T	p.P292P	TAGAGTGGGGACA	.	249	137	337	0	.	0	0	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36384973	36384973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DCLK1-826	NM_004734	exon12	c.G1687T	p.G563X	TTTACCCAGTCTC	.	40	22	43	0	.	0	0	0	0	0
MED4	29079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	48655799	48655799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MED4-187	NM_014166	exon5	c.C490A	p.P164T	TCAGTGGAGCACA	.	58	32	54	0	.	82	8	74	0	0
ATP7B	540	bcgsc.ca	37	13	52509068	52509068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ATP7B-92	NM_000053	exon21	c.G4222T	p.D1408Y	ACCTGTCATCCAT	.	82	44	101	3	.	1	0	1	0	0
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53624435	53624435	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OLFM4-69	NM_006418	exon5	c.C1062A	p.T354T	CCTGACCACCAAC	.	210	120	196	0	.	0	0	0	0	0
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	60545177	60545177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DIAPH3-516	NM_001042517	exon16	c.C1768G	p.P590A	GAGGTGGAGGCGG	.	93	64	72	0	.	1	0	1	0	0
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	70413106	70413106	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KLHL1-90	NM_020866	exon7	c.1414+2T>A	.	TTAAATACCTTTG	.	27	17	39	0	.	0	0	0	0	0
TMCO3	55002	bcgsc.ca	37	13	114154419	114154419	+	Silent	SNP	G	G	A	rs2260159	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMCO3-90	NM_017905	exon4	c.G771A	p.K257K	GACCAAGCCCAGA	.	147	6	163	2	G|0.796;A|0.204	10	10	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	51	4	17	0	.	5	5	0	0	0
POTEM	641455	bcgsc.ca	37	14	20020123	20020123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145442	exon1	c.C98A	p.P33H	CACCAGGGGAAGC	.	902	201	636	4	.	0	0	0	0	0
DCAF11	80344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24584856	24584856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_181357	exon2	c.A53T	p.E18V	CCTCCGAGGGCTT	.	69	20	57	0	.	6	1	5	0	0
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	29237443	29237443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXG1-660	NM_005249	exon1	c.C958A	p.R320S	CACCCCCGCGCCA	.	130	46	43	0	.	0	0	0	0	0
LRFN5	145581	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	42356008	42356008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRFN5-97	NM_152447	exon3	c.C180G	p.D60E	GGCAGACAATTTT	.	93	30	129	1	.	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45645661	45645661	+	Missense_Mutation	SNP	G	G	T	rs146490925		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FANCM-569	NM_020937	exon14	c.G3704T	p.G1235V	ATTTAGGATTCTG	.	23	7	41	0	G|1.000;T|0.000	0	0	0	0	0
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52923853	52923853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon17	c.G1658C	p.G553A	ACATATCCTTTTA	.	61	23	61	0	.	0	0	0	0	0
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53004373	53004373	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon5	c.A261G	p.E87E	TATTTCTTCTTTG	.	29	5	19	0	.	0	0	0	0	0
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	59113119	59113119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DACT1-291	NM_016651	exon4	c.G1778T	p.G593V	TCCAGGGGCTGGA	.	83	26	52	0	.	0	0	0	0	0
TMEM30B	161291	hgsc.bcm.edu	37	14	61747742	61747742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM30B-90	NM_001017970	exon1	c.G124T	p.A42S	GGCCCGCGCAGAA	.	33	16	6	0	.	2	2	0	0	0
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68251818	68251818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFYVE26-162	NM_015346	exon19	c.A3481T	p.T1161S	CAAGGGTGCTGCA	.	162	53	124	0	.	2	2	0	0	0
ACTN1	87	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69349604	69349604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACTN1-514	NM_001102	exon15	c.G1804A	p.G602S	ATTTGCCATTGAT	.	117	32	81	1	.	195	96	99	0	0
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76349181	76349181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTLL5-92	NM_015072	exon30	c.G3676A	p.V1226I	TCCCTGGTTCCCA	.	124	40	77	0	.	36	20	16	0	0
ASB2	51676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94420823	94420823	+	Silent	SNP	C	C	T	rs201823942		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASB2-228	NM_001202429	exon4	c.G318A	p.A106A	GGGGTCCGCAGGC	.	137	53	95	0	C|0.999;T|0.001	0	0	0	0	0
SERPINA12	145264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94955965	94955965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SERPINA12-310	NM_173850	exon5	c.G1045T	p.V349L	CGCCCACTTTCAG	.	182	71	131	1	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101347633	101347633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RTL1-46	NM_001134888	exon1	c.G3493T	p.E1165X	ACAGCTCAGCCAG	.	174	62	80	0	.	0	0	0	0	0
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103430940	103430940	+	Silent	SNP	C	C	A	rs45512495	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDC42BPB-581	NM_006035	exon19	c.G2625T	p.A875A	CAGCCGCGCGGAC	.	147	47	56	0	C|0.998;T|0.002	3	2	1	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	7	7	0	0	G|0.327;T|0.673	24	12	12	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	5	5	0	0	T|0.603;C|0.397	0	0	0	0	0
ADSSL1	122622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105208191	105208191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADSSL1-515	NM_199165	exon9	c.A929C	p.Y310S	GGACCTACCCCTT	.	213	70	152	0	.	0	0	0	0	0
OR4N4	283694	broad.mit.edu;bcgsc.ca	37	15	22382673	22382673	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR4N4-73	NM_001005241	exon1	c.C201A	p.A67A	CTTGGCCTTCCTG	.	329	31	240	0	.	0	0	0	0	0
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931489	23931489	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NDN-90	NM_002487	exon1	c.C876A	p.S292S	GTATCGGGAGGGC	.	26	13	29	0	.	2	2	0	0	0
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26806226	26806226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRB3-518	NM_021912	exon8	c.G933T	p.M311I	GCAGCCCATAAGG	.	134	56	122	0	.	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28422657	28422657	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HERC2-234	NM_004667	exon61	c.9164-2A>G	.	GCCACCTGCAACA	.	120	52	93	0	.	0	0	0	0	0
FAM189A1	23359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29416896	29416896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM189A1-22	NM_015307	exon10	c.G1297T	p.G433W	CGCTCCCAGGCAC	.	114	57	64	0	.	0	0	0	0	0
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33192240	33192240	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FMN1-23	NM_001103184	exon10	c.G2925T	p.R975R	TTGTCCCCGAGTC	.	64	19	50	0	.	0	0	0	0	0
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41313297	41313297	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	INO80-72	NM_017553	exon26	c.C3075G	p.Y1025X	ATTGCAGTAAGAA	.	97	35	90	0	.	7	4	3	0	0
FBN1	2200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48714179	48714179	+	Nonsense_Mutation	SNP	C	C	A	rs363811	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FBN1-92	NM_000138	exon61	c.G7540T	p.G2514X	TAAATCCGGGAGG	.	253	117	166	1	C|0.994;T|0.006	13	12	1	0	0
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50888468	50888468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM7-392	NM_017672	exon23	c.C3274G	p.L1092V	CAATAAGAAGATT	.	152	52	160	0	.	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63054564	63054564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLN2-573	NM_015059	exon36	c.A4873T	p.N1625Y	GCCATCAACCCCA	.	234	86	106	0	.	1	1	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	4	4	0	0	A|0.226;C|0.774	0	0	0	0	0
MTFMT	123263	hgsc.bcm.edu	37	15	65321938	65321938	+	Missense_Mutation	SNP	A	A	G	rs2946655	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MTFMT-24	NM_139242	exon1	c.T14C	p.V5A	CGCCGCACCAACA	.	17	8	0	0	A|0.942;G|0.058	4	0	4	0	0
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65687496	65687496	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IGDCC4-93	NM_020962	exon8	c.G1512T	p.V504V	GTAGGCCACCACG	.	175	65	104	0	.	0	0	0	0	0
C15orf60	283677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73766261	73766261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C15orf60-46	NM_001042367	exon2	c.T248A	p.L83Q	CACTACTGGTAGG	.	48	10	46	0	.	0	0	0	0	0
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74180025	74180025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D21-92	NM_153356	exon9	c.T842C	p.M281T	TGCAGATGGTGCG	.	164	41	91	0	.	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	75969502	75969502	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSPG4-229	NM_001897	exon10	c.T5358A	p.Y1786X	GTGGGCATACACT	.	18	4	14	0	.	2	2	0	0	0
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79063945	79063945	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS7-226	NM_014272	exon15	c.G2358A	p.K786K	AGGCTCCTTGGTG	.	36	13	30	0	.	0	0	0	0	0
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81624991	81624991	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMC3-70	NM_001080532	exon22	c.C3072A	p.P1024P	CAGAGGGGGCTGT	.	276	78	115	0	.	1	1	0	0	0
ZNF592	9640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85327349	85327349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF592-96	NM_014630	exon4	c.G1443C	p.K481N	AGGCAAGAAGCAA	.	93	37	68	1	.	1	1	0	0	0
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86791011	86791011	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_152336	exon6	c.G498T	p.R166R	CCGACGGGGCTTG	.	172	58	80	0	.	0	0	0	0	0
FES	2242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91436336	91436336	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FES-546	NM_002005	exon15	c.G1833A	p.L611L	GATCCTGAAGCAG	.	148	58	77	0	.	0	0	0	0	0
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93499776	93499776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHD2-229	NM_001271	exon16	c.C1897G	p.L633V	AAAACTCTGATTG	.	72	25	52	0	.	0	0	0	0	0
MEF2A	4205	broad.mit.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs72198683	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MEF2A-455	NM_005587	exon11	c.1234_1239del	p.412_413del	GGCTTCCAGCAGC	.	91	0	21	0	.	0	0	0	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100636657	100636657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS17-228	NM_139057	exon15	c.G2041T	p.G681W	CAGACCCGATGAT	.	115	29	70	0	.	0	0	0	0	0
CACNA1H	8912	bcgsc.ca	37	16	1256150	1256150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CACNA1H-67	NM_021098	exon12	c.C2650A	p.R884S	GTGCTGCGCACCT	.	104	70	23	1	.	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu	37	16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	rs2667674	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PTX4-90	NM_001013658	exon2	c.T497C	p.L166P	CCCTCCAGAGCAG	.	16	13	1	0	A|0.928;G|0.072	0	0	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2815642	2815642	+	Missense_Mutation	SNP	C	C	A	rs146437403	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SRRM2-93	NM_016333	exon11	c.C5113A	p.R1705S	CTGTCCCGTAGAA	.	52	29	75	0	C|1.000;T|0.000	15	0	15	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27523098	27523098	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GTF3C1-94	NM_001520	exon7	c.G1098T	p.R366R	CATATCCCGCTCG	.	236	162	209	1	.	2	0	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	4	0	4	0	0
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56899349	56899349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC12A3-155	NM_001126108	exon1	c.G202C	p.E68Q	ACATATGAGCACT	.	162	64	105	0	.	0	0	0	0	0
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57736008	57736008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CCDC135-90	NM_032269	exon5	c.G665T	p.R222L	TGACGCGGGAGGT	.	263	112	174	0	.	0	0	0	0	0
DDX28	55794	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	68056823	68056823	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DDX28-226	NM_018380	exon1	c.C283G	p.Q95E	AGCCTTGAGAGGC	.	26	12	11	0	.	9	3	6	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72829226	72829226	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.7355delC	p.P2452fs	AGCTCTGGCTTTG	.	70	14	48	0	.	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu	37	16	72829227	72829228	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.7353_7354del	p.2451_2452del	GCTCTGGCTTTGG	.	70	0	47	0	.	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;bcgsc.ca	37	16	72829228	72829228	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.G7353A	p.K2451K	CTCTGGCTTTGGT	.	68	14	47	0	.	0	0	0	0	0
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83378568	83378568	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH13-67	NM_001220488	exon7	c.G879T	p.R293R	CTTTCGGGAAGGC	.	116	48	77	0	.	1	0	1	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	7	7	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	24	15	1	0	G|0.858;T|0.142	6	4	2	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	11	8	0	0	C|0.846;T|0.154	1030	275	754	0	1
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C16orf3-90	NM_001214	exon1	c.G193A	p.G65S	GGCAGCCTACGGG	.	204	14	63	0	C|0.500;T|0.500	0	0	0	0	0
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90099238	90099238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.A401T	p.Q134L	GCATACAGGAGAG	.	383	93	190	0	.	11	11	0	0	0
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90099240	90099240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.G403T	p.E135X	ATACAGGAGAGTG	.	384	94	184	0	.	11	11	0	0	0
CLUH	23277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2601707	2601707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_015229	exon10	c.G1330T	p.A444S	AGGCCGCCACGTC	.	275	137	175	1	.	4	0	4	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TP53-70225	NM_000546	exon7	c.A701G	p.Y234C	TAGTTGTAGTGGA	.	203	94	204	2	.	6	0	6	0	0
RCVRN	5957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9801437	9801437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RCVRN-90	NM_002903	exon3	c.T578A	p.V193E	TCCTTCACTTTTT	.	115	64	114	0	.	0	0	0	0	0
MYH2	4620	mdanderson.org	37	17	10432658	10432658	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MYH2-194	NM_017534	exon25	c.C3258G	p.L1086L	CTTTTTGAGCTTT	.	10	5	30	1	.	0	0	0	0	0
TVP23B	51030	bcgsc.ca	37	17	18702220	18702220	+	Silent	SNP	T	T	C	rs8080471	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_016078	exon5	c.T426C	p.A142A	ATTTGCTTTTAGT	.	117	6	174	0	T|0.313;C|0.687	7	7	0	0	0
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319469	21319469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001194958	exon3	c.A815T	p.H272L	TCTTGCATGAGAT	.	390	89	383	0	.	0	0	0	0	0
TAOK1	57551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27807461	27807461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TAOK1-521	NM_025142	exon7	c.G525T	p.M175I	TTCCATGGCATCA	.	66	37	103	1	.	1	0	1	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29560226	29560226	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NF1-3353	NM_000267	exon27	c.C3703T	p.Q1235X	TGTTCTCAGTGGG	.	100	66	93	0	.	0	0	0	0	0
SLFN14	342618	broad.mit.edu;bcgsc.ca	37	17	33881631	33881631	+	Missense_Mutation	SNP	T	T	C	rs321612	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLFN14-1	NM_001129820	exon2	c.A1153G	p.K385E	TAAATTTGTGGAC	.	74	5	99	1	C|0.651;N|0.000	0	0	0	0	0
PSMC5	5705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61905533	61905533	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PSMC5-178	NM_002805	exon2	c.C60A	p.L20L	CGGACTCCGCCAA	.	125	97	81	0	.	136	5	131	0	0
SPHK1	8877	hgsc.bcm.edu	37	17	74381720	74381720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHK1-1107	NM_182965	exon2	c.G253A	p.E85K	CGGGTCGAGGTTA	.	14	8	4	0	.	2	2	0	0	0
P4HB	5034	hgsc.bcm.edu	37	17	79818287	79818287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	P4HB-46	NM_000918	exon1	c.G61T	p.E21X	CCTCCTCGGGGGC	.	48	22	5	0	.	97	83	14	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	31158619	31158619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASXL3-49	NM_030632	exon1	c.G24T	p.K8N	GAAGAAGGACCGC	.	105	61	43	0	.	0	0	0	0	0
SETBP1	26040	mdanderson.org	37	18	42530098	42530098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.G793T	p.G265C	GCCCAGGGTAAGA	.	14	9	24	1	.	0	0	0	0	0
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42531994	42531994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.T2689A	p.C897S	GATTTCTGCTCCC	.	47	26	72	0	.	0	0	0	0	0
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	42532100	42532100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.G2795T	p.S932I	ACGAAAGCCTCAA	.	18	10	64	0	.	0	0	0	0	0
SERPINB11	89778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61390440	61390440	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SERPINB11-67	.	.	.	.	ATTTATCAAAAGC	.	125	70	174	1	.	0	0	0	0	0
ODF3L2	284451	hgsc.bcm.edu	37	19	464080	464080	+	Missense_Mutation	SNP	C	C	T	rs76592524		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ODF3L2-68	NM_182577	exon4	c.G634A	p.A212T	TGTTTGCGTCCGG	.	7	5	0	0	C|0.969;T|0.031	0	0	0	0	0
GRIN3B	116444	broad.mit.edu	37	19	1008889	1008889	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIN3B-90	NM_138690	exon8	c.G2665T	p.E889X	CCACCAGAGGGGT	.	118	4	77	0	.	2	2	0	0	0
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1220640	1220640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STK11-5227	NM_000455	exon5	c.C658T	p.Q220X	GCTTTCCAGCCGC	.	73	48	28	0	.	14	8	6	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912163	1912163	+	Silent	SNP	G	G	A	rs199915192		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAT3-154	NM_138422	exon2	c.G117A	p.P39P	TGAGCCGGCGCCG	.	27	22	1	0	G|0.996;A|0.004	0	0	0	0	0
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3179663	3179663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	S1PR4-591	NM_003775	exon1	c.G873T	p.W291C	GGACTGGATCCTG	.	121	68	103	0	.	3	3	0	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9059570	9059570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.G27876C	p.E9292D	GCTGGTCTCCATC	.	78	39	120	1	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9060440	9060440	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.27006delC	p.P9002fs	TGGTGTGGGGGTC	.	135	73	169	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9071377	9071377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.A16069T	p.S5357C	GGATGCTCTGTGG	.	158	101	191	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9080534	9080534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon2	c.C9497A	p.T3166N	ATGGTGGTCACTA	.	124	74	123	0	.	0	0	0	0	0
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14749012	14749012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EMR3-528	NM_032571	exon11	c.G1389T	p.M463I	CCACTTCATGAGT	.	220	15	274	0	.	0	0	0	0	0
CPAMD8	27151	bcgsc.ca	37	19	17108135	17108135	+	Missense_Mutation	SNP	C	C	T	rs3745340	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPAMD8-141	NM_015692	exon11	c.G1022A	p.R341Q	AAGTCCCGGGAGC	.	329	11	318	2	C|0.647;T|0.353	0	0	0	0	0
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17598000	17598000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC27A1-226	NM_198580	exon3	c.G580T	p.G194W	GTGAGCGGGCATC	.	48	38	38	0	.	0	0	0	0	0
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17994715	17994715	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC5A5-93	NM_000453	exon12	c.C1386A	p.G462G	CTTGGGCGCCACG	.	44	27	10	0	.	0	0	0	0	0
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	30935331	30935331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF536-144	NM_014717	exon2	c.G862T	p.E288X	CGCGAGGAGCTGG	.	55	26	17	0	.	0	0	0	0	0
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33078192	33078192	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDCD5-228	NM_004708	exon6	c.G364C	p.D122H	GATGAAGATGACG	.	317	150	304	1	.	348	183	165	0	0
HAUS5	23354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36110596	36110596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HAUS5-68	NM_015302	exon15	c.G1342A	p.E448K	TGTCTGGAGGAGG	.	235	68	145	0	.	5	2	3	0	0
LRFN3	79414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36435463	36435463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRFN3-90	NM_024509	exon3	c.G1429A	p.E477K	CCGGCGGAGAGCC	.	78	26	18	0	.	5	3	2	0	0
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	19	37211001	37211001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF567-90	NM_152603	exon4	c.C1282T	p.R428C	TCCTTCCGCCAGA	.	126	6	85	0	.	5	5	0	0	0
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37734341	37734341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF383-92	NM_152604	exon5	c.G1203T	p.K401N	TGGGAAGGCCTTT	.	55	25	74	0	.	8	3	5	0	0
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38027960	38027960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF793-68	NM_001013659	exon8	c.C400T	p.Q134X	TCAATCCAGAGCC	.	39	16	73	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39019290	39019290	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_000540	exon75	c.G10989A	p.L3663L	GATCCTGACTGAA	.	483	153	358	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39038919	39038919	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_000540	exon89	c.C12141A	p.L4047L	CATGCTCGTGGAA	.	398	153	261	1	.	0	0	0	0	0
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40901699	40901699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRX-92	NM_181882	exon7	c.C2560G	p.L854V	AAGGCAGAGTGAG	.	82	28	69	0	.	0	0	0	0	0
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42507538	42507538	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK5-90	NM_002088	exon18	c.C2460T	p.F820F	CGCCACGAAGACA	.	215	13	99	0	.	0	0	0	0	0
CBLC	23624	hgsc.bcm.edu	37	19	45281452	45281452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBLC-849	NM_001130852	exon1	c.G264T	p.E88D	TCTGGAGGCCAAG	.	39	4	14	0	.	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	33	12	1	0	T|0.861;C|0.139	135	70	65	0	0
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	47878770	47878770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DHX34-231	NM_014681	exon10	c.G2112T	p.Q704H	CGCGCAGGTAGGG	.	26	10	11	0	.	10	7	3	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258037	48258037	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLTSCR2-514	NM_015710	exon8	c.C942T	p.G314G	CCAGGGCGAGGGG	.	45	18	3	0	.	285	141	143	1	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	4	4	0	0	A|0.308;G|0.692	4	0	4	0	0
LMTK3	114783	hgsc.bcm.edu	37	19	48994785	48994785	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LMTK3-1357	NM_001080434	exon14	c.C4191A	p.T1397T	CTCGTTGGTTGGC	.	46	4	25	0	.	0	0	0	0	0
SPHK2	56848	hgsc.bcm.edu	37	19	49132867	49132867	+	Missense_Mutation	SNP	G	G	C	rs61751862	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHK2-658	NM_020126	exon7	c.G1802C	p.G601A	AGCTGGGCTACGC	.	135	62	1	0	G|0.994;C|0.006	10	3	7	0	0
POLD1	5424	mdanderson.org	37	19	50905080	50905080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POLD1-840	NM_002691	exon4	c.C362T	p.S121F	GCGGCTCCGTGCC	.	88	40	25	1	.	5	1	4	0	0
POLD1	5424	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50918779	50918779	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POLD1-840	NM_002691	exon21	c.C2649T	p.I883I	GGTCATCACCAAG	.	445	142	157	1	.	44	24	20	0	0
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249798	52249798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FPR1-524	NM_001193306	exon3	c.G450T	p.W150C	CATCACCCAGGGC	.	242	93	197	0	.	10	8	2	0	0
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762456	53762456	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	VN1R2-90	NM_173856	exon1	c.C828T	p.L276L	GGGGCTCATGCTC	.	181	63	138	2	.	0	0	0	0	0
ZNF845	91664	ucsc.edu	37	19	53856702	53856702	+	Missense_Mutation	SNP	G	G	A	rs200114728		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_138374	exon4	c.G2774A	p.R925H	CCTTCCGTCACAA	.	167	33	157	18	.	2	2	0	0	0
ZNF845	91664	ucsc.edu	37	19	53856730	53856730	+	Silent	SNP	G	G	A	rs201351032		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_138374	exon4	c.G2802A	p.K934K	TCATAAGACAATT	.	176	33	165	18	.	0	0	0	0	0
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54756391	54756391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LILRB5-92	NM_001081442	exon10	c.G1496T	p.G499V	GCAGCCCCTGCAG	.	55	32	39	0	.	19	19	0	0	0
KIR3DX1	90011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55054617	55054617	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIR3DX1-91	.	.	.	.	ACGGAAGGCCAAC	.	213	66	155	0	.	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	14	5	0	0	A|0.808;G|0.192	3	2	1	0	0
ZNF628	89887	hgsc.bcm.edu;broad.mit.edu	37	19	55993021	55993021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF628-22	NM_033113	exon3	c.C461G	p.P154R	ACTGCCCCAAGGC	.	200	23	25	0	.	1	1	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993436	55993436	+	Missense_Mutation	SNP	G	G	T	rs147110934		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF628-22	NM_033113	exon3	c.G876T	p.E292D	GGTGGAGCTGGTG	.	25	18	3	0	G|0.978;T|0.022	0	0	0	0	0
RFPL4A	342931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56274485	56274485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RFPL4A-68	NM_001145014	exon3	c.T808C	p.C270R	AGTATCTGTTCTG	.	282	36	223	0	.	0	0	0	0	0
NLRP8	126205	broad.mit.edu;bcgsc.ca	37	19	56467088	56467088	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NLRP8-361	NM_176811	exon3	c.T1664A	p.M555K	CTCACATGGGACT	.	55	24	52	1	.	0	0	0	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56511131	56511131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NLRP5-162	NM_153447	exon1	c.C40G	p.L14V	GCTGCTCTGCTCT	.	104	41	77	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	11	11	0	0	.	0	0	0	0	0
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	57911240	57911240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF548-67	NM_001172773	exon4	c.G1621T	p.E541X	ACAATGGAGAAAG	.	28	14	27	0	.	8	5	3	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	8	8	0	0	G|0.301;C|0.699	0	0	0	0	0
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1652055	1652055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PXDN-166	NM_012293	exon17	c.G3497T	p.G1166V	GGGATCCCGTGGT	.	192	91	104	0	.	1	0	1	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231248	21231248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APOB-175	NM_000384	exon26	c.C8492A	p.S2831Y	TTGCTGGAGAACT	.	66	29	46	0	.	0	0	0	0	0
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33811716	33811716	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM98A-91	NM_015475	exon6	c.A633T	p.I211I	ATTGGCTATGGCT	.	44	17	40	0	.	5	4	1	0	0
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47641427	47641427	+	Missense_Mutation	SNP	C	C	T	rs139891783		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MSH2-2445	NM_000251	exon5	c.C812T	p.S271F	CACTGTCTGCGGT	.	45	22	83	0	.	12	4	8	0	0
SPTBN1	6711	broad.mit.edu;mdanderson.org	37	2	54858733	54858733	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPTBN1-140	NM_003128	exon16	c.C3549G	p.A1183A	CGAAGCCTTTCTT	.	61	21	49	0	.	0	0	0	0	0
UGP2	7360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64111157	64111157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGP2-90	NM_006759	exon5	c.G505A	p.E169K	ACGGATGAAGATA	.	47	18	78	0	.	34	19	15	0	0
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71039579	71039579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC4F-95	NM_173535	exon5	c.G1539T	p.Q513H	TCTGACCTGCTCC	.	162	55	135	0	.	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101656658	101656658	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D8-25	NM_001102426	exon6	c.C1017T	p.I339I	CAGGATGATCTTA	.	220	68	132	0	.	2	0	2	0	0
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102998142	102998142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL18R1-93	NM_003855	exon5	c.G688A	p.G230R	GAATTAGGTATAT	.	77	28	94	0	.	0	0	0	0	0
SULT1C3	442038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108872131	108872131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SULT1C3-91	NM_001008743	exon4	c.A503T	p.Y168F	AATTTTATGAGAA	.	99	18	79	0	.	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	6	6	0	0	A|0.029;G|0.971	0	0	0	0	0
IL1RN	3557	ucsc.edu;bcgsc.ca	37	2	113887216	113887216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL1RN-92	NM_173841	exon4	c.G189T	p.L63F	ATACTTGCAAGGA	.	402	134	268	4	.	1	1	0	0	0
MARCO	8685	hgsc.bcm.edu;bcgsc.ca	37	2	119731955	119731955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARCO-95	NM_006770	exon5	c.507delC	p.G169fs	CCCTGGCCCGCCG	.	71	27	76	1	.	0	0	0	0	0
C1QL2	165257	hgsc.bcm.edu;broad.mit.edu	37	2	119915573	119915573	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1QL2-91	NM_182528	exon1	c.273delG	p.G91fs	AGGGGGCCCCCGC	.	22	11	6	0	.	0	0	0	0	0
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125262066	125262066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon8	c.C1257A	p.S419R	GCTGAGCCTGGAG	.	172	71	127	1	.	0	0	0	0	0
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125547619	125547619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon18	c.G2890T	p.G964C	AGCTACGGCAGCA	.	304	100	204	1	.	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125660460	125660460	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon22	c.G3435A	p.E1145E	TGCAGAGAATCTT	.	85	32	71	0	.	0	0	0	0	0
POTEF	728378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130877801	130877801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POTEF-27	NM_001099771	exon3	c.C288A	p.N96K	CATCTTGTTCCTG	.	536	67	343	1	.	0	0	0	0	0
IMP4	92856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131103419	131103419	+	Missense_Mutation	SNP	G	G	T	rs200939050	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IMP4-90	NM_033416	exon6	c.G507T	p.M169I	GGTCATGCGGCAT	.	134	55	79	0	.	89	50	39	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014602	133014602	+	RNA	SNP	G	G	C	rs75245503	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	.	.	.	.	CAGACAGGAGGGA	.	144	40	30	2	G|0.500;C|0.500	0	0	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014612	133014612	+	RNA	SNP	A	A	C	rs74853538	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	.	.	.	.	GGAGGTACCGCAG	.	171	53	34	2	A|0.333;C|0.667	0	0	0	0	0
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	135922249	135922249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAB3GAP1-92	NM_001172435	exon23	c.2692delT	p.F898fs	AAGCTGTTTGTGA	.	135	17	84	0	.	0	0	0	0	0
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	145153988	145153988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZEB2-297	NM_014795	exon9	c.G3058T	p.E1020X	TGTGTTCGTATTT	.	315	88	199	0	.	0	0	0	0	0
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158626945	158626945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACVR1-980	NM_001105	exon7	c.A725T	p.E242V	GACTTCTCATCAC	.	161	53	99	0	.	4	3	1	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166152582	166152582	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN2A-142	NM_001040143	exon1	c.C249A	p.P83P	GGACCCCTACTAT	.	157	62	146	0	.	0	0	0	0	0
SESTD1	91404	bcgsc.ca	37	2	179979930	179979930	+	Silent	SNP	T	T	C	rs2289993	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SESTD1-228	NM_178123	exon16	c.A1701G	p.Q567Q	CAAAGATTGGCAT	.	151	5	92	1	T|0.810;C|0.190	10	10	0	0	0
ITGA4	3676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182374441	182374441	+	Silent	SNP	T	T	A	rs201546110		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ITGA4-230	NM_000885	exon16	c.T1752A	p.G584G	CCTTGGTCCTCAT	.	81	14	76	1	.	3	2	1	0	0
PDE1A	5136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183088596	183088596	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDE1A-93	NM_001258312	exon8	c.G831A	p.Q277Q	CCTTGTCTGAATG	.	118	34	126	0	.	0	0	0	0	0
PDE1A	5136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183088641	183088641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDE1A-93	NM_001258312	exon8	c.T786G	p.I262M	ATCATGAATGGCA	.	190	59	172	1	.	0	0	0	0	0
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198257760	198257760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SF3B1-140	NM_012433	exon24	c.T3692C	p.M1231T	GCTCCCATAACTG	.	279	96	261	1	.	362	199	163	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203972654	203972654	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBEAL1-92	NM_001114132	exon13	c.G1605A	p.L535L	ATTGCTGAGAGTG	.	109	34	77	0	.	0	0	0	0	0
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204075696	204075696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBEAL1-92	NM_001114132	exon53	c.C7714T	p.H2572Y	GCATTACATCTGT	.	70	13	113	1	.	1	1	0	0	0
CRYGA	1418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209028275	209028275	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRYGA-90	NM_014617	exon1	c.G6T	p.G2G	CACCTTCCCCATG	.	317	129	203	1	.	0	0	0	0	0
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211456582	211456582	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPS1-162	NM_001122633	exon11	c.C993T	p.I331I	GAATATCACAAAC	.	56	21	31	0	.	0	0	0	0	0
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216930060	216930060	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PECR-90	NM_018441	exon3	c.G399T	p.T133T	GGTACCCGTCAGG	.	160	51	110	0	.	27	13	14	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220332029	220332029	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPEG-383	NM_005876	exon10	c.C3015T	p.G1005G	CCGTGGCCGCCTG	.	105	34	47	0	.	0	0	0	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225379488	225379488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CUL3-229	NM_001257198	exon4	c.A398T	p.D133V	ACACGGTCCTACA	.	128	48	107	0	.	0	0	0	0	0
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226447396	226447396	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_020864	exon4	c.C1263G	p.Y421X	GCTGTACCGAACC	.	210	65	97	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883966	228883966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHKAP-167	NM_030623	exon7	c.C1604A	p.A535E	TGCAGTGCACCAC	.	60	17	41	0	.	0	0	0	0	0
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234878408	234878408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM8-94	NM_024080	exon16	c.C2095G	p.L699V	CTGTGTCTGTTTA	.	257	106	230	0	.	0	0	0	0	0
CPXM1	56265	hgsc.bcm.edu	37	20	2781078	2781078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPXM1-94	NM_001184699	exon1	c.C141A	p.S47R	TGCCGGGCTGCTA	.	38	27	4	0	.	2	0	2	0	0
LZTS3	0	hgsc.bcm.edu	37	20	3145553	3145553	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_014731	exon3	c.C1569T	p.P523P	GTCCACGGGGGTC	.	13	9	0	0	.	1	0	1	0	0
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9360778	9360778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCB4-274	NM_182797	exon11	c.G822T	p.M274I	TGAGATGTATGAA	.	223	67	251	0	.	0	0	0	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	85	4	63	3	.	0	0	0	0	0
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34063418	34063418	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEP250-27	NM_007186	exon15	c.G1663T	p.E555X	CACCTGGAAGGGG	.	146	58	101	0	.	0	0	0	0	0
ACTR5	79913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37383613	37383613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACTR5-90	NM_024855	exon4	c.G789T	p.W263C	CAAATGGCGGTGT	.	193	60	213	1	.	5	1	4	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	7	4	0	0	C|0.615;A|0.385	0	0	0	0	0
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43850726	43850726	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMG2-91	NM_003008	exon2	c.T453A	p.S151S	CCCATCTGGAAAG	.	264	104	238	0	.	0	0	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47630130	47630130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARFGEF2-358	NM_006420	exon29	c.G3948A	p.M1316I	TGACATGAATGTA	.	151	50	89	0	.	1	1	0	0	0
KCNB1	3745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47990374	47990374	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNB1-92	NM_004975	exon2	c.C1723G	p.R575G	CTGTGCGAGTGGG	.	117	34	96	0	.	0	0	0	0	0
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872153	51872153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TSHZ2-232	NM_173485	exon2	c.C2156A	p.S719Y	CCTGCTCCAGCCC	.	163	55	72	0	.	0	0	0	0	0
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54824215	54824215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MC3R-660	NM_019888	exon1	c.C316A	p.L106M	GACTACCTGACCT	.	492	178	281	0	.	0	0	0	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57430199	57430199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GNAS-4767	NM_080425	exon1	c.C1879T	p.Q627X	AGTCCCCAGCCCA	.	112	34	108	0	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768876	57768876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF831-126	NM_178457	exon1	c.T2802A	p.D934E	GGCAGATAATGCC	.	60	20	49	0	.	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001037335	exon9	c.T5462G	p.L1821R	ACGGCCAGGGTGT	.	16	10	2	0	A|0.739;C|0.261	2	2	0	0	0
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30959761	30959761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK1-137	NM_000830	exon12	c.C1718A	p.P573H	GACAGGGGGTTGA	.	221	72	159	0	.	0	0	0	0	0
KRTAP24-1	643803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31654682	31654682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP24-1-68	NM_001085455	exon1	c.C569A	p.P190Q	CATAATGGTGAGA	.	143	60	132	0	.	0	0	0	0	0
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39817408	39817408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ERG-848	NM_004449	exon4	c.C176G	p.P59R	TGCTGAGGGACGC	.	342	120	238	0	.	2	2	0	0	0
DNMT3L	29947	broad.mit.edu;bcgsc.ca	37	21	45676028	45676028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNMT3L-228	NM_013369	exon7	c.C526A	p.L176I	TCTCAAGGGGATT	.	261	29	284	2	.	0	0	0	0	0
KRTAP10-8	386681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46032129	46032129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP10-8-153	NM_198695	exon1	c.G112A	p.G38S	TGCACTGGCTCCT	.	140	48	57	0	.	0	0	0	0	0
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19752531	19752531	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBX1-154	NM_080647	exon6	c.T735C	p.Y245Y	GGTCTATGTGGAC	.	147	97	170	0	.	1	0	1	0	0
SGSM1	129049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25240890	25240890	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGSM1-27	NM_001098497	exon3	c.G90A	p.V30V	GGCTGTGACACGC	.	145	102	103	0	.	0	0	0	0	0
SEZ6L	23544	hgsc.bcm.edu	37	22	26689105	26689105	+	Silent	SNP	G	G	A	rs17395296	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEZ6L-95	NM_021115	exon2	c.G828A	p.Q276Q	CGAGCAGGCACCA	.	4	4	2	0	G|0.931;A|0.069	0	0	0	0	0
SFI1	9814	hgsc.bcm.edu;bcgsc.ca	37	22	31904328	31904328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SFI1-90	NM_001258327	exon2	c.A58G	p.I20V	AAAGTGATTAAGC	.	48	4	64	0	.	0	0	0	0	0
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38323452	38323452	+	Silent	SNP	G	G	A	rs201808090		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MICALL1-153	NM_033386	exon9	c.G1500A	p.P500P	GGAGCCGCCCTCG	.	44	29	18	0	.	5	0	5	0	0
SOX10	6663	broad.mit.edu;bcgsc.ca	37	22	38379397	38379397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SOX10-650	NM_006941	exon2	c.C395T	p.A132V	AGCTCAGCGTTGT	.	346	249	60	2	.	0	0	0	0	0
EP300	2033	bcgsc.ca	37	22	41568590	41568590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EP300-2011	NM_001429	exon28	c.G4540A	p.E1514K	GTTCTGGAAGAAA	.	165	116	175	4	.	8	0	8	0	0
SBF1	6305	ucsc.edu;bcgsc.ca	37	22	50901135	50901135	+	Silent	SNP	C	C	A	rs143643893	by1000genomes;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SBF1-90	NM_002972	exon18	c.G1980T	p.P660P	CACCCCCGGGCTC	.	195	141	123	1	C|0.994;T|0.006	0	0	0	0	0
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15778712	15778712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANKRD28-135	NM_015199	exon5	c.C290G	p.S97C	TCTGCAGAATGCT	.	46	24	68	0	.	3	0	3	0	0
GOLGA4	2803	hgsc.bcm.edu	37	3	37336491	37336491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GOLGA4-93	NM_001172713	exon7	c.G670T	p.A224S	CAGCAGGCAAAGA	.	81	6	123	0	.	0	0	0	0	0
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42739085	42739085	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HHATL-93	NM_020707	exon7	c.C780A	p.A260A	GTCGACGGCCATG	.	230	122	214	0	.	0	0	0	0	0
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49692898	49692898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BSN-97	NM_003458	exon5	c.G5909T	p.R1970M	AGCAGAGGCCCTA	.	18	10	30	0	.	0	0	0	0	0
RBM15B	29890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51430916	51430916	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RBM15B-90	NM_013286	exon1	c.A2086T	p.K696X	GAGCCCAAGCCTC	.	206	123	222	0	.	46	5	41	0	0
DNAH1	25981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52430932	52430932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNAH1-67	NM_015512	exon73	c.G11659T	p.D3887Y	GTCACTGATGACT	.	114	68	150	1	.	2	1	1	0	0
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56992915	56992915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARHGEF3-228	NM_001128615	exon3	c.C65G	p.P22R	CGTTTAGGCCTAG	.	130	78	125	0	.	0	0	0	0	0
PSMD6	9861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64008128	64008128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PSMD6-91	NM_001271779	exon3	c.A376T	p.M126L	TCTTCATTTTATT	.	149	81	171	2	.	30	8	22	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77666782	77666782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ROBO2-328	NM_002942	exon22	c.G3412T	p.A1138S	GGCGTGGCTTCTT	.	164	93	148	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	9	9	0	0	T|0.412;A|0.588	0	0	0	0	0
P2RY14	9934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150931660	150931660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	P2RY14-563	NM_014879	exon3	c.A445G	p.M149V	GGAGCATGAGCAT	.	168	13	88	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	1336	85	586	27	G|0.998;A|0.002	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	5	4	1	0	A|0.886;G|0.114	6	1	5	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	12	9	1	0	C|1.000;|0.000	5	3	2	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	48	21	6	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	44	22	2	0	.	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583231	8583231	+	Silent	SNP	C	C	A	rs61741008	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	17	6	1	0	C|0.992;A|0.008	0	0	0	0	0
FAM200B	285550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15689683	15689683	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145191	exon2	c.G1083A	p.L361L	CTCATTGAATAGC	.	47	23	105	0	.	0	0	0	0	0
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20884247	20884247	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNIP4-91	NM_025221	exon1	c.G87T	p.S29S	AGGAGACGACGTT	.	34	18	50	0	.	0	0	0	0	0
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46252425	46252425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRA2-94	NM_000807	exon10	c.G1256C	p.R419T	GACATTCTGTCAA	.	58	31	80	0	.	0	0	0	0	0
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47765548	47765548	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CORIN-91	NM_006587	exon4	c.G465C	p.T155T	TGTCAGCGTGGCG	.	156	85	142	0	.	0	0	0	0	0
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69094576	69094576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPRSS11B-91	NM_182502	exon9	c.G973T	p.D325Y	AAAAGTCTTCTTG	.	140	76	149	0	.	0	0	0	0	0
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69817028	69817028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGT2A3-92	NM_024743	exon1	c.G451T	p.V151L	GAATCACAGGGTC	.	146	72	234	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536233	88536238	+	In_Frame_Del	DEL	AGTGAT	AGTGAT	-	rs200486992	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	AGTGAT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DSPP-90	NM_014208	exon5	c.2419_2424del	p.807_808del	AACAGCAGTGATA	.	987	27	968	8	.	0	0	0	0	0
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91389426	91389426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145065	exon5	c.G1645T	p.A549S	TGTGCCGCAGTAG	.	100	60	153	0	.	0	0	0	0	0
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762414	96762414	+	Silent	SNP	A	A	G	rs150761581	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDHA2-90	NM_005390	exon1	c.A1113G	p.S371S	TGATTCATCTTTT	.	184	125	172	0	A|0.998;C|0.002	0	0	0	0	0
CENPE	1062	bcgsc.ca	37	4	104082349	104082349	+	Silent	SNP	C	C	T	rs2251634	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CENPE-277	NM_001813	exon20	c.G2025A	p.Q675Q	CTCCAACTGGCTT	.	43	4	69	0	T|0.334;G|0.148	0	0	0	0	0
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110448529	110448529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEC24B-137	NM_006323	exon18	c.T3017C	p.L1006P	GTTCACTAGCAGA	.	69	41	98	0	.	11	0	11	0	0
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111542464	111542464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PITX2-650	NM_000325	exon2	c.G267C	p.K89N	CCGCTTCTTCTTA	.	50	23	62	0	.	1	0	1	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114163347	114163347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK2-583	NM_001148	exon9	c.G873T	p.Q291H	CGGTCAGATCGAT	.	142	73	166	0	.	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268929	123268929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1109-80	NM_015312	exon74	c.G13124A	p.R4375Q	TTCCTCGAAGAGG	.	165	103	119	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126238731	126238731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT4-108	NM_024582	exon1	c.G1165T	p.A389S	TCTCCCGCGGCCA	.	275	157	223	0	.	0	0	0	0	0
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162954783	162954783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FSTL5-158	NM_020116	exon3	c.G154T	p.V52F	CTTTGACTCTTGA	.	16	9	44	0	.	0	0	0	0	0
ACSL1	2180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	185687098	185687098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACSL1-92	NM_001995	exon14	c.G1306T	p.A436S	CCGGGGCGGCTCC	.	155	89	158	1	.	0	0	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7802377	7802377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADCY2-97	NM_020546	exon21	c.C2675T	p.S892F	TTGCCTCCATTCC	.	126	42	97	0	.	0	0	0	0	0
C5orf49	134121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7832052	7832052	+	Missense_Mutation	SNP	G	G	A	rs202097565		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C5orf49-22	NM_001089584	exon3	c.C355T	p.R119C	TGGCACGGCCAAA	.	157	51	98	1	.	0	0	0	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23527817	23527817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRDM9-139	NM_020227	exon11	c.A2620T	p.S874C	AGGTCAAGCCTCT	.	284	115	194	0	.	0	0	0	0	0
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38869147	38869147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OSMR-496	NM_001168355	exon2	c.A1G	p.M1V	GAACTGATGGCTC	.	98	25	104	0	.	0	0	0	0	0
FYB	2533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39118988	39118988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FYB-24	NM_001243093	exon16	c.G2419A	p.E807K	CTTCTTCATTTCT	.	88	15	80	0	.	0	0	0	0	0
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73930600	73930600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ENC1-228	NM_003633	exon2	c.G1711T	p.V571F	ACGGGACAGTGGT	.	413	134	312	0	.	7	6	1	0	0
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74681788	74681788	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	COL4A3BP-226	NM_001130105	exon14	c.C1740A	p.G580G	TGTGACGCCTTTA	.	73	24	60	0	.	0	0	0	0	0
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94764306	94764306	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM81B-92	NM_152548	exon6	c.657-1G>C	.	CCATTAGATGTGA	.	199	85	161	2	.	0	0	0	0	0
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101576467	101576467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLCO4C1-93	NM_180991	exon11	c.C1831T	p.R611W	GGGACCGTTGTCT	.	179	66	206	1	.	0	0	0	0	0
IL3	3562	bcgsc.ca	37	5	131396478	131396478	+	Missense_Mutation	SNP	C	C	T	rs40401	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL3-92	NM_000588	exon1	c.C79T	p.P27S	ACAACGCCCTTGA	.	251	9	134	0	C|0.616;N|0.000	0	0	0	0	0
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595249	140595249	+	Silent	SNP	T	T	G	rs144959109	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCDHB13-93	NM_018933	exon1	c.T1554G	p.S518S	CAGGTCTCTGGAC	.	548	214	172	2	T|0.999;G|0.001	2	0	2	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140723866	140723866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCDHGA3-68	NM_032011	exon1	c.G266T	p.R89M	CGGAGAGGATAGA	.	116	42	122	0	.	0	0	0	0	0
FAT2	2196	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150946780	150946780	+	Silent	SNP	C	C	A	rs35225143	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT2-96	NM_001447	exon1	c.G1713T	p.G571G	GATAGACCCTGTA	.	178	55	142	0	C|0.948;A|0.052	0	0	0	0	0
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	151231112	151231112	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLRA1-91	NM_000171	exon7	c.751delT	p.Y251fs	TCAGGTAGTAACC	.	313	130	224	0	.	0	0	0	0	0
HAVCR1	26762	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156482398	156482398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HAVCR1-92	NM_001099414	exon3	c.A193G	p.N65D	TTCCATTGGTCCA	.	235	95	171	1	.	0	0	0	0	0
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176016115	176016115	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDHR2-70	NM_017675	exon22	c.C2940A	p.T980T	GGCCACCATCCCT	.	191	62	163	0	.	2	0	2	0	0
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176314086	176314086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HK3-294	NM_002115	exon13	c.C1774A	p.Q592K	TCTGCTGGAAGTC	.	266	98	144	0	.	2	2	0	0	0
GRM6	2916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178413936	178413936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRM6-588	NM_000843	exon7	c.G1403T	p.G468V	TACCGCCCGGGCG	.	168	67	90	1	.	0	0	0	0	0
ALDH5A1	7915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24523089	24523089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ALDH5A1-90	NM_170740	exon8	c.T1148C	p.V383A	TGCGCGTAGGTAA	.	111	35	99	0	.	6	3	3	0	0
HIST1H2BA	255626	bcgsc.ca	37	6	25727448	25727448	+	Silent	SNP	G	G	A	rs16890972	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H2BA-204	NM_170610	exon1	c.G312A	p.L104L	GCTACTGCCGGGA	.	152	6	95	0	G|0.965;A|0.035	0	0	0	0	0
HIST1H3A	8350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26020915	26020915	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H3A-92	NM_003529	exon1	c.A198G	p.L66L	TAAACTACCTTTC	.	148	56	75	0	.	0	0	0	0	0
HIST1H3F	8968	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26250440	26250440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H3F-68	NM_021018	exon1	c.C394G	p.R132G	CTCCGCGAATGCG	.	216	82	152	1	.	0	0	0	0	0
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27806779	27806779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H2BN-68	NM_003520	exon1	c.G340A	p.E114K	GTGTCGGAGGGCA	.	211	74	84	0	.	5	0	5	0	0
ZKSCAN3	80317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28331530	28331530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZKSCAN3-92	NM_024493	exon5	c.C695T	p.S232L	AGGATTCATCTCA	.	190	63	149	0	.	1	0	1	0	0
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29692009	29692009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HLA-F-22	NM_001098478	exon3	c.C394T	p.R132C	CTCCTCCGCGGGT	.	237	81	130	0	.	420	285	135	0	0
PRRC2A	7916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31590581	31590581	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRRC2A-156	NM_004638	exon2	c.G15T	p.S5S	TCGCTCGGGGCCG	.	132	48	84	0	.	2	1	1	0	0
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32017977	32017977	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TNXB-90	NM_019105	exon27	c.C9231T	p.S3077S	CATCCAGGACAGG	.	309	103	219	0	.	0	0	0	0	0
HLA-DQA1	3117	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32610520	32610520	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HLA-DQA1-90	NM_002122	exon4	c.C747A	p.S249S	TGCTTCCAGACAC	.	341	140	179	1	.	57	57	0	0	0
UHRF1BP1	54887	broad.mit.edu;bcgsc.ca	37	6	34838842	34838842	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UHRF1BP1-93	NM_017754	exon18	c.G3930A	p.P1310P	GATCCCGGTGGTA	.	107	45	83	1	.	1	1	0	0	0
KCTD20	222658	bcgsc.ca	37	6	36446975	36446975	+	Missense_Mutation	SNP	G	G	C	rs2239808	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCTD20-92	NM_173562	exon4	c.G512C	p.S171T	GCATCAGTGCAAC	.	281	7	182	0	G|0.619;C|0.381	5	5	0	0	0
GUCA1B	2979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42156332	42156332	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GUCA1B-92	NM_002098	exon2	c.C345G	p.L115L	AATGTTGAGTAGC	.	117	43	79	1	.	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	9	0	0	C|0.673;A|0.327	4	0	4	0	0
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46623682	46623682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC25A27-90	NM_001204051	exon2	c.G209A	p.G70E	ATAGGGGAATGGT	.	156	72	100	0	.	0	0	0	0	0
CRISP1	167	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49806196	49806196	+	Silent	SNP	G	G	A	rs35289289	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRISP1-90	NM_001205220	exon7	c.C576T	p.G192G	TGGGACGCCTGTC	.	58	24	43	0	G|0.960;A|0.040	0	0	0	0	0
PKHD1	5314	bcgsc.ca	37	6	51512887	51512887	+	Silent	SNP	A	A	G	rs17667728	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PKHD1-603	NM_138694	exon63	c.T11340C	p.P3780P	CTCTGAAGGAGGT	.	97	4	59	0	A|0.960;G|0.040	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920477	51920477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PKHD1-603	NM_170724	exon19	c.T1744C	p.F582L	CACAGAAGGGCTC	.	139	49	63	0	.	0	0	0	0	0
IL17A	3605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52052591	52052591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL17A-90	NM_002190	exon2	c.C218T	p.P73L	CCTCACCTTGGAA	.	161	44	102	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56336950	56336950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DST-523	NM_015548	exon75	c.G14196T	p.R4732S	GTTTACCCTAGGA	.	235	84	138	0	.	32	11	21	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	7	7	0	0	T|0.089;G|0.911	0	0	0	0	0
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117013269	117013269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KPNA5-290	NM_002269	exon3	c.G190C	p.E64Q	ATGCTTGAAAGTC	.	76	42	148	0	.	2	0	2	0	0
CCDC170	80129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151936589	151936589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_025059	exon10	c.G1722T	p.L574F	AACTTTGGAACAG	.	47	18	82	1	.	0	0	0	0	0
SYNE1	23345	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152763327	152763327	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SYNE1-607	NM_033071	exon31	c.G3912T	p.A1304A	CGCCTGCGCGATC	.	57	39	43	1	.	0	0	0	0	0
WTAP	9589	ucsc.edu;bcgsc.ca	37	6	160169397	160169397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WTAP-90	NM_001270533	exon6	c.G448A	p.D150N	ACGCCTGATAGGT	.	176	88	236	3	.	13	5	8	0	0
RPS6KA2	6196	bcgsc.ca	37	6	166862233	166862233	+	Silent	SNP	T	T	C	rs2230730	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RPS6KA2-1405	NM_001006932	exon15	c.A1335G	p.T445T	GGTGTCTGTGGCT	.	167	6	122	1	T|0.761;C|0.239;A|0.000	0	0	0	0	0
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6022454	6022454	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PMS2-1083	NM_000535	exon13	c.2174+1G>A	.	CACTCACGCTATG	.	624	157	506	1	.	1	0	1	0	0
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6565891	6565891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145118	exon4	c.G883A	p.G295S	CGTGGCCGCGAAG	.	87	30	70	0	.	0	0	0	0	0
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	13971174	13971174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.755delC	p.P252fs	AGAGGAGGGGGAA	.	176	58	149	0	.	0	0	0	0	0
ETV1	2115	hgsc.bcm.edu	37	7	13971176	13971177	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.752_753del	p.251_251del	AGGAGGGGGAAAG	.	178	0	150	0	.	0	0	0	0	0
ETV1	2115	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	13971177	13971177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.C752T	p.P251L	GGAGGGGGAAAGC	.	178	59	149	0	.	0	0	0	0	0
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	19184760	19184760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FERD3L-153	NM_152898	exon1	c.G226T	p.E76X	CCTCCTCTTCTCC	.	65	22	73	0	.	0	0	0	0	0
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40085455	40085455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDK13-548	NM_003718	exon6	c.G2374A	p.E792K	GTGTTTGAATATA	.	53	21	47	0	.	9	5	4	0	0
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	48068434	48068434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SUN3-514	NM_152782	exon2	c.C102T	p.D34D	ATTTTCGTCCTCT	.	218	18	176	0	.	0	0	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314045	48314045	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCA13-521	NM_152701	exon17	c.C4782G	p.G1594G	TGTAGGCAATTCC	.	69	28	91	0	.	0	0	0	0	0
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50444361	50444361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKZF1-1242	NM_006060	exon4	c.G291T	p.R97S	CCACAGGGACCAA	.	197	80	143	0	.	0	0	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82784132	82784132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCLO-29	NM_014510	exon2	c.A1825T	p.T609S	TGCATGTGTTAAA	.	272	90	180	0	.	0	0	0	0	0
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	84685101	84685101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMA3D-138	NM_152754	exon7	c.C793A	p.R265S	ATTCACGAAAGAA	.	26	12	45	0	.	0	0	0	0	0
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87178755	87178755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCB1-582	NM_000927	exon15	c.T1634A	p.L545Q	CGAACCAGGGCAC	.	191	51	123	0	.	0	0	0	0	0
RUNDC3B	154661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87400049	87400049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RUNDC3B-69	NM_138290	exon8	c.T833A	p.L278H	ATCAGCTTACCCT	.	155	68	123	0	.	0	0	0	0	0
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854425	89854425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STEAP2-92	NM_001040665	exon3	c.C29T	p.P10L	GAAGCCCTAAGAG	.	172	54	121	0	.	2	2	0	0	0
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114268677	114268677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXP2-295	NM_001172767	exon4	c.C416A	p.S139Y	TCCTGTCTCCTCA	.	140	39	98	0	.	0	0	0	0	0
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117232327	117232327	+	Silent	SNP	C	C	G	rs1800102		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CFTR-518	NM_000492	exon14	c.C2106G	p.L702L	TATTCTCAATCCA	.	16	6	30	0	.	0	0	0	0	0
CTTNBP2	83992	hgsc.bcm.edu	37	7	117358169	117358169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CTTNBP2-94	NM_033427	exon22	c.C4649A	p.A1550D	GAATCAGCAATCT	.	75	4	46	0	.	0	0	0	0	0
FEZF1	389549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121942939	121942939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FEZF1-91	NM_001024613	exon3	c.G983T	p.S328I	GTGGAACTTCTAT	.	89	30	105	0	.	0	0	0	0	0
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122759235	122759235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC13A1-92	NM_022444	exon13	c.G1412T	p.W471L	ATTAGCCATGCTG	.	74	28	71	1	.	0	0	0	0	0
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124503540	124503540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POT1-227	NM_015450	exon8	c.G410T	p.R137L	CAAACACGTAAGG	.	267	96	191	0	.	1	0	1	0	0
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453154	140453154	+	Missense_Mutation	SNP	T	T	C	rs121913338	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BRAF-92146	NM_004333	exon15	c.A1781G	p.D594G	CCAAAATCACCTA	.	77	25	54	0	.	1	0	1	0	0
CLEC5A	23601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141635690	141635690	+	Missense_Mutation	SNP	G	G	A	rs117965702	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC5A-90	NM_013252	exon5	c.C269T	p.S90L	CAAGATGATTCAG	.	76	27	60	0	G|0.998;T|0.002	0	0	0	0	0
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142750104	142750104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR6V1-23	NM_001001667	exon1	c.G667C	p.V223L	ACCACTGTGCTGC	.	264	102	208	0	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;mdanderson.org	37	7	149518553	149518553	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_198455	exon88	c.C12622T	p.Q4208X	TGCCCTCAGCCCT	.	56	22	9	0	.	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750467	8750467	+	Silent	SNP	A	A	G	rs1062988		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MFHAS1-90	NM_004225	exon1	c.T102C	p.L34L	GGCGGTAAGCGTG	.	7	6	0	0	A|0.857;G|0.143	0	0	0	0	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35579843	35579843	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC5D-96	NM_080872	exon9	c.C1233G	p.G411G	CTATGGCGTGGAC	.	207	120	166	0	.	0	0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48801138	48801138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRKDC-1515	.	.	.	.	CAGACACAACAGC	.	160	4	244	1	.	1	1	0	0	0
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52321329	52321329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PXDNL-70	NM_144651	exon17	c.C2855A	p.P952H	AAACAGGGGCTCT	.	144	82	111	1	.	0	0	0	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53071652	53071652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ST18-95	NM_014682	exon15	c.C1612G	p.P538A	TCACTGGATTTGG	.	34	17	24	0	.	0	0	0	0	0
HEY1	23462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80677603	80677603	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HEY1-658	NM_001040708	exon5	c.C747T	p.T249T	GGCGGAGGTGACC	.	283	30	115	0	.	3	3	0	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98656966	98656966	+	Missense_Mutation	SNP	G	G	T	rs17854373	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MTDH-91	NM_178812	exon1	c.G232T	p.A78S	GCCGGCGCCCGCA	.	12	4	1	0	G|0.973;T|0.027	1	1	0	0	0
ZFPM2	23414	broad.mit.edu;bcgsc.ca	37	8	106813740	106813740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFPM2-139	NM_012082	exon8	c.C1430A	p.P477Q	CTAGCCCAAGACT	.	53	38	52	2	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114449052	114449052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSMD3-1132	NM_052900	exon1	c.C32A	p.A11E	TCCTTTGCTCGGC	.	44	32	43	0	.	0	0	0	0	0
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_016647	exon1	c.C429T	p.G143G	GGACGGCTTCGTG	.	5	5	0	0	C|0.534;T|0.466	17	0	17	0	0
CYP11B2	1585	ucsc.edu	37	8	143994279	143994279	+	Silent	SNP	A	A	G	rs61757295	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CYP11B2-90	NM_000498	exon7	c.T1144C	p.L382L	GCTCCAAAAACAG	.	354	89	128	10	A|0.992;G|0.008	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	9	8	0	0	A|0.118;G|0.882	1	0	1	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649601	144649601	+	Silent	SNP	A	A	G	rs13268196		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001100878	exon14	c.T1968C	p.A656A	GGCCACAGCCGGC	.	4	4	0	0	A|0.057;G|0.943	3	0	3	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001100878	exon14	c.A1944G	p.R648R	CTGCAGTCGCCCT	.	13	13	0	0	T|0.058;C|0.942	0	0	0	0	0
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145747994	145747994	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC24-90	NM_001024678	exon5	c.G1407A	p.E469E	GAACATCTCGTGG	.	301	57	66	0	.	16	13	3	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	10	9	0	0	G|0.992;C|0.006	0	0	0	0	0
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4573909	4573909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC1A1-514	NM_004170	exon8	c.A770T	p.Y257F	CCAGTTATATGCC	.	137	21	104	0	.	0	0	0	0	0
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17462995	17462995	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTLN-91	NM_017738	exon20	c.A3388T	p.K1130X	CACATAAAGGAAA	.	335	104	283	0	.	4	4	0	0	0
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18776919	18776919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTSL1-230	NM_001040272	exon19	c.C2692T	p.R898C	GTGCTGCGCTGCC	.	139	47	5	0	.	0	0	0	0	0
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	19300261	19300261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND4C-92	NM_017925	exon9	c.G1243T	p.E415X	TTACTTGAGAGTA	.	80	31	70	0	.	0	0	0	0	0
ELAVL2	1993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	23701604	23701604	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELAVL2-516	NM_004432	exon6	c.488-2A>T	.	TATGCCTATGGTA	.	99	41	103	1	.	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	31	11	2	0	G|0.807;C|0.193	0	0	0	0	0
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35366986	35366986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC13B-157	NM_006377	exon11	c.G1210A	p.E404K	CTCCCGGAAGGGT	.	80	18	60	0	.	0	0	0	0	0
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35684309	35684309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPM2-515	NM_213674	exon8	c.G706A	p.E236K	GGGTCTCAGCCTG	.	116	35	98	0	.	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37733737	37733737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FRMPD1-159	NM_014907	exon12	c.C1133T	p.S378F	TTATTTCTGCTGC	.	27	11	34	0	.	0	0	0	0	0
SPATA31A6	389730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	43627291	43627291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145196	exon4	c.C1396T	p.L466F	GGAAAAGCAGTGG	.	27	19	14	0	.	0	0	0	0	0
APBA1	320	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	72132096	72132096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APBA1-91	NM_001163	exon2	c.G31C	p.E11Q	TCACCTCCACCTC	.	41	16	10	0	.	0	0	0	0	0
MURC	347273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103348271	103348271	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MURC-69	NM_001018116	exon2	c.G633A	p.R211R	GACACGGCAGAAT	.	128	26	94	0	.	0	0	0	0	0
OR13C3	138803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107298061	107298061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13C3-69	NM_001001961	exon1	c.C1034A	p.P345Q	TGAATTGGTTTTT	.	103	29	83	0	.	0	0	0	0	0
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	107457687	107457687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13D1-70	NM_001004484	exon1	c.G985T	p.V329F	AAAGAGGTCAAAG	.	71	20	43	0	.	0	0	0	0	0
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	111679945	111679945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKBKAP-318	NM_003640	exon9	c.C746T	p.S249L	CTGCCTGAGGGTC	.	92	46	88	0	.	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	9	7	0	0	C|0.917;T|0.083	0	0	0	0	0
KIAA1958	158405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115336645	115336645	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1958-91	NM_133465	exon2	c.G285A	p.Q95Q	GACACAGACTAGC	.	176	67	141	0	.	0	0	0	0	0
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475158	120475158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLR4-577	NM_138554	exon3	c.C752A	p.A251D	GTCTGGCTGGTTT	.	28	13	35	0	.	0	0	0	0	0
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124979518	124979518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LHX6-90	NM_014368	exon5	c.G511T	p.D171Y	CCCAGTCGCTGGC	.	163	19	51	0	.	0	0	0	0	0
OR1J4	26219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125281773	125281773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR1J4-90	NM_001004452	exon1	c.G354T	p.M118I	TTCAATGGCATAC	.	161	63	125	1	.	0	0	0	0	0
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125645584	125645584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RC3H2-523	NM_018835	exon5	c.G658T	p.V220L	AAAGTACCAGAAC	.	138	49	132	0	.	2	0	2	0	0
DENND1A	57706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126439003	126439003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND1A-92	NM_024820	exon6	c.G368C	p.R123T	ACCTGTCTTTTTG	.	36	16	33	0	.	0	0	0	0	0
PTGDS	5730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139874677	139874677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PTGDS-91	NM_000954	exon5	c.C491A	p.T164N	AATTCACCGCCTT	.	157	48	122	0	.	2	2	0	0	0
NELFB	25920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140150001	140150001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_015456	exon1	c.G40A	p.E14K	AACGGCGAGGACC	.	120	47	31	0	.	21	9	12	0	0
PPP2R3B	28227	ucsc.edu;bcgsc.ca	37	X	299594	299594	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PPP2R3B-136	NM_013239	exon11	c.G1389A	p.L463L	GTTAGCCAGCTTG	.	401	228	341	2	.	0	0	0	0	0
ARSH	347527	bcgsc.ca	37	X	2945477	2945477	+	Missense_Mutation	SNP	C	C	T	rs61751925	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARSH-130	NM_001011719	exon7	c.C1160T	p.T387M	ATCCGACGCTGTC	.	123	5	116	0	C|0.940;T|0.060	0	0	0	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734328	12734328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FRMPD4-263	NM_014728	exon15	c.G1750A	p.D584N	ATCACAGACAGCA	.	58	4	51	0	.	0	0	0	0	0
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49083514	49083514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CACNA1F-176	NM_001256789	exon9	c.G1194T	p.E398D	GTCTTCCTCCATC	.	67	45	54	0	.	0	0	0	0	0
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73962657	73962657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA2022-183	NM_001008537	exon3	c.G1735T	p.A579S	GCTTGGCATATTT	.	49	39	54	0	.	0	0	0	0	0
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83124906	83124906	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CYLC1-112	NM_021118	exon2	c.C51T	p.S17S	TAATTCCATTCCA	.	67	37	89	0	.	0	0	0	0	0
CSTF2	1478	broad.mit.edu	37	X	100075447	100075447	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSTF2-131	NM_001325	exon1	c.T42G	p.S14S	TCGTTCTCTACGT	.	182	4	105	0	.	7	7	0	0	0
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118774715	118774715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEPT6-969	NM_145802	exon6	c.G727C	p.E243Q	TCAGTTCTTCTGT	.	79	61	51	0	.	6	3	3	0	0
GRIA3	2892	bcgsc.ca	37	X	122537277	122537277	+	Silent	SNP	T	T	C	rs502434	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIA3-134	NM_000828	exon9	c.T1200C	p.N400N	CTGGAATGAGTAT	.	112	5	59	0	T|0.362;0|0.004	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135431107	135431107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR112-183	NM_153834	exon6	c.G5242A	p.E1748K	GTTCCTGAAAATA	.	28	19	30	0	.	0	0	0	0	0
MIR506	574511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	146312342	146312342	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	.	.	.	.	CACATAGTATGGC	.	155	99	133	0	.	0	0	0	0	0
MAGEA2	4101	hgsc.bcm.edu	37	X	151886093	151886093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_175742	exon6	c.498delG	p.V166fs	CGAGGTGGTGGAA	.	585	207	422	0	.	0	0	0	0	0
MAGEA2	4101	hgsc.bcm.edu	37	X	151919389	151919389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_175742	exon6	c.499delG	p.V167fs	CTTCCACCACCTC	.	606	196	471	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca	37	1	158627366	158627367	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPTA1-142	NM_003126	exon19	c.2706_2707insA	p.Q902fs	GTACTGCTGGAAC	.	208	155	112	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	36	12	4	0	.	0	0	0	0	0
NAALADL2	254827	broad.mit.edu	37	3	175293828	175293829	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NAALADL2-47	NM_207015	exon10	c.1654-1->A	.	TTTTCAGAAAAAT	.	54	8	48	0	.	0	0	0	0	0
ELAVL2	1993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	23693475	23693476	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELAVL2-516	NM_004432	exon6	c.723_724insA	p.N241fs	GAGCAGATTGTCC	.	122	42	107	0	.	0	0	0	0	0
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79385979	79385980	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELTD1-24	NM_022159	exon10	c.G1349T	p.W450F	AAGAACCAGAAGG	.	45	6	45	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093104	1093105	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C4924G	p.P1642A	CCAACCCCAACAC	.	176	0	105	0	.	0	0	0	0	0
SDS	10993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	113836362	113836363	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SDS-91	NM_006843	exon5	c.C382A	p.P128M	AACCCGGGTTGTT	.	68	0	33	0	.	0	0	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240804	39240805	+	Missense_Mutation	DNP	CG	CG	AT	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_033061	exon1	c.G347T	p.R116I	GCTGCCGCCCCTG	.	162	0	46	0	.	0	0	0	0	0
LIM2	3982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51890472	51890473	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LIM2-90	NM_030657	exon2	c.G225T	p.D76Y	GAGGTCCGCCCTG	.	79	5	67	0	C|0.999;T|0.001	0	0	0	0	0
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26881656	26881657	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH9-99	NM_016279	exon12	c.G1958T	p.R653L	TTGTCCCGGACAT	.	45	1	43	0	.	0	0	0	0	0
