Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu	37	1	6530886	6530886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG5-652	NM_001265592	exon15	c.C1688A	p.P563H	TGGTGGGGTTTGG	.	78	5	74	0	.	0	0	0	0	0
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8557547	8557547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RERE-515	NM_012102	exon10	c.G922T	p.D308Y	CTGTATCACCATC	.	177	73	258	1	.	3	2	1	0	0
ANGPTL7	10218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11249964	11249964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANGPTL7-90	NM_021146	exon1	c.G328T	p.D110Y	CAAATTGACATCA	.	96	36	114	0	.	0	0	0	0	0
KAZN	23254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15390118	15390118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KAZN-91	NM_015209	exon7	c.G1098T	p.Q366H	TGTACAGGTAGGT	.	87	35	98	0	.	0	0	0	0	0
IFI6	2537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27995817	27995817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFI6-91	NM_002038	exon2	c.G9T	p.Q3H	CGCCTTCTGCCGC	.	96	13	70	0	.	260	204	56	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	10	10	0	0	G|0.061;T|0.939	0	0	0	0	0
NCDN	23154	broad.mit.edu;bcgsc.ca	37	1	36026523	36026523	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCDN-155	NM_014284	exon3	c.C771A	p.C257X	TGAATGCTACCGG	.	69	5	56	0	.	12	12	0	0	0
FOXJ3	22887	broad.mit.edu;bcgsc.ca	37	1	42657323	42657323	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FOXJ3-228	NM_001198851	exon11	c.C1002A	p.P334P	ACTGCTGGGAGAG	.	202	8	242	0	.	5	5	0	0	0
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43055014	43055014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC30-90	NM_001080850	exon9	c.G1243T	p.D415Y	AACGTAGATGAGT	.	86	42	125	0	.	7	6	1	0	0
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	44685801	44685801	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMAP1-226	NM_001034024	exon10	c.G1164T	p.L388L	TGAGCTGCAGATG	.	200	13	153	0	.	80	76	4	0	0
MAST2	23139	broad.mit.edu	37	1	46493447	46493447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAST2-581	NM_015112	exon17	c.G1964T	p.G655V	ACTTTGGACTGTC	.	155	4	157	1	.	0	0	0	0	0
NSUN4	387338	bcgsc.ca	37	1	46810498	46810498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NSUN4-90	NM_199044	exon2	c.C119A	p.A40D	TCCCTGCTGTTCG	.	125	52	133	3	.	6	6	0	0	0
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50659584	50659584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELAVL4-516	NM_001144775	exon4	c.G553T	p.V185F	GATCAAGTCACAG	.	170	68	181	0	.	0	0	0	0	0
ZFYVE9	9372	bcgsc.ca	37	1	52704417	52704417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFYVE9-230	NM_007324	exon4	c.C1328A	p.A443E	GATTGGCAGATGC	.	122	41	100	3	.	0	0	0	0	0
CYP2J2	1573	broad.mit.edu;bcgsc.ca	37	1	60377418	60377418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2J2-91	NM_000775	exon4	c.C546A	p.F182L	GATCTTGAAATGA	.	208	9	263	0	.	1	1	0	0	0
LEPR	3953	hgsc.bcm.edu;broad.mit.edu	37	1	66098847	66098847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LEPR-91	NM_001003679	exon20	c.C2686A	p.L896I	GACATTCTTTGAA	.	26	6	24	0	.	0	0	0	0	0
IL23R	149233	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67724387	67724387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL23R-90	NM_144701	exon11	c.C1466A	p.S489X	AAATTTCAAATTT	.	118	25	168	1	.	0	0	0	0	0
NEXN	91624	broad.mit.edu	37	1	78401561	78401561	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEXN-92	NM_144573	exon11	c.C1305A	p.I435I	ACTGATCAAATTA	.	126	9	125	2	.	0	0	0	0	0
LPHN2	23266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82409449	82409449	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LPHN2-525	NM_012302	exon5	c.C1194A	p.A398A	TCCTGCCCAAGGT	.	124	25	106	1	.	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CTBS-90	NM_004388	exon1	c.92_100del	p.31_34del	CGAGCCGCAGCGC	.	66	26	6	0	.	0	0	0	0	0
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85592293	85592293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR63-95	NM_145172	exon20	c.G2212A	p.G738R	GAAGATGGATACA	.	111	7	89	0	.	4	4	0	0	0
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92187701	92187701	+	Missense_Mutation	SNP	C	C	A	rs140100898	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBR3-93	NM_001195683	exon8	c.G886T	p.A296S	TAGGAGCCTGAAG	.	57	8	40	0	C|0.999;A|0.001	0	0	0	0	0
SLC44A3	126969	broad.mit.edu;bcgsc.ca	37	1	95310885	95310885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC44A3-91	NM_001114106	exon9	c.G937T	p.V313F	TTGACAGTTGAGC	.	55	29	61	2	.	4	1	3	0	0
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110561730	110561730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AHCYL1-91	NM_006621	exon14	c.G1375T	p.A459S	ATCACAGCCACAA	.	57	18	57	0	.	0	0	0	0	0
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111862838	111862838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CHIA-91	NM_201653	exon12	c.G1181T	p.C394F	CAGGTTGCACGGC	.	80	9	103	0	.	0	0	0	0	0
KCND3	3752	broad.mit.edu	37	1	112525124	112525126	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCND3-155	NM_004980	exon2	c.223_225del	p.75_75del	CTCGTTGAAGAAG	.	199	7	196	0	.	0	0	0	0	0
MAGI3	260425	broad.mit.edu;ucsc.edu	37	1	114225611	114225611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI3-524	NM_001142782	exon21	c.G3421T	p.E1141X	ATATTTGAAGAGT	.	109	19	120	2	.	5	5	0	0	0
SPAG17	200162	broad.mit.edu;bcgsc.ca	37	1	118539252	118539252	+	Missense_Mutation	SNP	G	G	T	rs150351466	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPAG17-158	NM_206996	exon33	c.C4891A	p.H1631N	GCTGATGATTCTT	.	85	6	113	1	G|1.000;A|0.000	0	0	0	0	0
TBX15	6913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	119427957	119427957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBX15-136	NM_152380	exon8	c.G889T	p.A297S	TTCGGGCACATGG	.	42	13	54	0	.	1	1	0	0	0
MRPL9	65005	bcgsc.ca	37	1	151735532	151735532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL9-91	NM_031420	exon2	c.C244A	p.L82M	CCACCAGCTTATA	.	192	73	156	2	.	25	20	5	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151787731	151787731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RORC-227	NM_005060	exon5	c.C469A	p.Q157K	GCAGCTGCCCGTC	.	49	9	66	0	.	2	1	1	0	0
LCE6A	448835	broad.mit.edu	37	1	152816014	152816014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001128600	exon2	c.G18T	p.Q6H	GAAGCAGCAATCT	.	81	11	80	2	.	0	0	0	0	0
SPRR2A	6700	broad.mit.edu	37	1	153029123	153029123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPRR2A-69	NM_005988	exon2	c.C89A	p.P30Q	CACTTCGGGGGTG	.	54	5	54	0	.	61	61	0	0	0
IL6R	3570	broad.mit.edu;bcgsc.ca	37	1	154427044	154427044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL6R-229	NM_000565	exon9	c.G1147T	p.A383S	TGCATTGCCATTG	.	68	7	84	0	.	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841756	154841756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNN3-91	NM_001204087	exon1	c.G685T	p.A229S	GGTGGGCATGGTT	.	87	14	120	0	.	0	0	0	0	0
YY1AP1	55249	broad.mit.edu;bcgsc.ca	37	1	155630075	155630075	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YY1AP1-93	NM_001198903	exon10	c.C2040A	p.I680I	AGGTTTGATACAG	.	257	25	270	1	.	32	27	5	0	0
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156841476	156841476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NTRK1-1393	NM_001012331	exon7	c.G779T	p.R260M	TCAACAGGAAGAA	.	161	21	138	0	.	0	0	0	0	0
FCRL3	115352	broad.mit.edu;bcgsc.ca	37	1	157665960	157665960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FCRL3-156	NM_052939	exon7	c.G1002T	p.K334N	CTGGGTCTTTCTA	.	112	6	138	2	.	0	0	0	0	0
LY9	4063	bcgsc.ca	37	1	160784476	160784476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LY9-91	NM_001261457	exon4	c.G997A	p.G333S	GACGCCGGCCCCT	.	161	143	164	4	.	0	0	0	0	0
FMO1	2326	ucsc.edu	37	1	171227313	171227313	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FMO1-515	NM_002021	exon2	c.C87A	p.T29T	GCCCACCTGCTTT	.	47	10	57	3	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	9	9	0	0	T|0.229;C|0.771	2	0	2	0	0
RGSL1	353299	broad.mit.edu	37	1	182443145	182443145	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RGSL1-226	NM_001137669	exon6	c.C899A	p.S300X	CTTCTTCAAAGGA	.	92	4	106	0	.	0	0	0	0	0
HMCN1	83872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186050464	186050464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HMCN1-113	NM_031935	exon56	c.G8725T	p.D2909Y	CAGAAAGATGGAC	.	77	24	72	1	.	0	0	0	0	0
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186301382	186301382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPR-228	NM_003292	exon38	c.C5549A	p.T1850K	TCCACTGTATCAT	.	78	4	107	0	.	12	12	0	0	0
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186909138	186909138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLA2G4A-721	NM_024420	exon10	c.G945T	p.L315F	CAGTTTGAAGGAA	.	70	7	53	0	.	2	2	0	0	0
CFHR4	10877	ucsc.edu;bcgsc.ca	37	1	196883674	196883674	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFHR4-93	NM_001201550	exon8	c.C1230A	p.G410G	TAATGGCATGCGG	.	344	45	492	6	.	0	0	0	0	0
CACNA1S	779	broad.mit.edu;bcgsc.ca	37	1	201058470	201058470	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA1S-94	NM_000069	exon6	c.C816A	p.I272I	GTGGGTGATGCCA	.	241	10	180	2	.	0	0	0	0	0
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201193916	201193916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGFN1-71	NM_001164586	exon21	c.G10400T	p.G3467V	TGGCTGGACTCTC	.	200	76	154	1	.	0	0	0	0	0
TMEM183A	92703	bcgsc.ca	37	1	202985162	202985162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM183A-90	NM_138391	exon5	c.C602A	p.A201D	TCCGGGCTTGTGT	.	87	42	108	3	.	31	19	12	0	0
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204588338	204588338	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRN2-514	NM_006338	exon3	c.C783T	p.P261P	GAGCCCGGGCACC	.	50	7	46	0	.	0	0	0	0	0
DSTYK	25778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205156626	205156626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DSTYK-333	NM_199462	exon2	c.C574A	p.L192M	CCTCCAGATCCTC	.	128	53	148	1	.	1	1	0	0	0
ACBD3	64746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226347014	226347014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACBD3-226	NM_022735	exon5	c.C774A	p.F258L	CTGCTGGAACTGC	.	153	23	182	1	.	9	6	3	0	0
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232144789	232144789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DISC1-91	NM_001164537	exon12	c.G2397T	p.Q799H	TGAACAGAAAGAG	.	43	19	55	0	.	0	0	0	0	0
NTPCR	84284	ucsc.edu	37	1	233105834	233105834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NTPCR-91	NM_032324	exon4	c.C474G	p.I158M	AGAAATCAGAAAC	.	181	24	189	4	.	40	37	3	0	0
FH	2271	ucsc.edu	37	1	241667408	241667408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FH-416	NM_000143	exon7	c.G1042T	p.G348C	GAGGACCAGAACC	.	79	14	144	2	.	116	95	21	0	0
EXO1	9156	broad.mit.edu	37	1	242042620	242042620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EXO1-661	NM_130398	exon13	c.G2084T	p.C695F	CTCAGTGCTCTAG	.	28	6	28	0	.	4	2	2	0	0
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7214601	7214601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SFMBT2-141	NM_001029880	exon18	c.G2007T	p.K669N	GATCTTCTTTCTC	.	22	9	21	0	.	0	0	0	0	0
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8115981	8115981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GATA3-1004	NM_001002295	exon6	c.G1330T	p.G444C	GCCATGGGTTAGA	.	64	26	61	0	.	1	1	0	0	0
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12148305	12148305	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHTKD1-515	NM_018706	exon11	c.G1957T	p.E653X	AGCATTGAGAGCC	.	120	55	189	1	.	2	2	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21962834	21962834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLLT10-658	NM_001195626	exon10	c.C1607A	p.S536Y	GCTCATCTCCAGT	.	43	7	73	0	.	0	0	0	0	0
COMMD3-BMI1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22618192	22618192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001204062	exon14	c.G1131T	p.M377I	AAGAATGAAGATC	.	29	8	37	0	.	12	5	7	0	0
GPR158	57512	ucsc.edu;bcgsc.ca	37	10	25839971	25839971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR158-141	NM_020752	exon6	c.G1471T	p.G491C	CTTCTCGGTTTTG	.	131	24	167	2	.	0	0	0	0	0
SVIL	6840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	29818653	29818653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SVIL-96	NM_021738	exon12	c.G2227T	p.E743X	CCACCTCTTCAGT	.	44	17	50	1	.	0	0	0	0	0
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	35897531	35897531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GJD4-155	NM_153368	exon2	c.G1090T	p.A364S	CTGAGAGCCAGGA	.	158	10	128	0	.	0	0	0	0	0
BMS1	9790	broad.mit.edu	37	10	43292520	43292520	+	Nonsense_Mutation	SNP	G	G	T	rs146520651	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BMS1-93	NM_014753	exon10	c.G1828T	p.E610X	GAAAATGAAGAGG	.	98	4	123	0	G|1.000;C|0.000	7	7	0	0	0
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50531426	50531426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C10orf71-90	NM_001135196	exon3	c.C836A	p.S279X	TTGAGTCATGGAA	.	136	38	161	0	.	0	0	0	0	0
AGAP7	653268	bcgsc.ca	37	10	51464918	51464918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001077685	exon7	c.G1538T	p.G513V	TCATTGCCAATAG	.	116	16	137	0	.	17	9	8	0	0
DKK1	22943	broad.mit.edu	37	10	54076186	54076186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DKK1-1083	NM_012242	exon3	c.C538A	p.H180N	ATGTATCACACCA	.	102	4	124	1	.	0	0	0	0	0
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63845627	63845627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARID5B-94	NM_032199	exon9	c.G1366T	p.E456X	GAAAAAGAAAATG	.	18	10	29	0	.	3	1	2	0	0
CDH23	64072	broad.mit.edu	37	10	73437259	73437259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH23-563	NM_022124	exon15	c.C1561A	p.L521M	GCCAGGCTGGACT	.	84	6	131	1	.	2	2	0	0	0
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75528805	75528805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEC24C-92	NM_198597	exon17	c.C2319A	p.S773R	CATGAGCAACACG	.	97	46	153	0	.	22	17	5	0	0
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78761184	78761184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNMA1-93	NM_001161352	exon19	c.C2247A	p.C749X	GGTGGAGCAATCA	.	152	19	208	2	.	0	0	0	0	0
CYP2C9	1559	bcgsc.ca	37	10	96748656	96748656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2C9-96	NM_000771	exon9	c.C1344A	p.F448L	TTTATTCCTGACC	.	96	46	141	4	.	0	0	0	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99126277	99126277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RRP12-92	NM_015179	exon28	c.G3317T	p.R1106L	CATGCCCGGCTCC	.	58	10	75	0	.	60	56	4	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	4	4	0	0	A|0.009;G|0.991	9	0	9	0	0
AS3MT	57412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104638614	104638614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AS3MT-44	NM_020682	exon9	c.C751A	p.R251S	GACTGTCGTTTTG	.	96	17	128	0	.	20	15	5	0	0
CCDC172	374355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	118101581	118101581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198515	exon5	c.G316T	p.D106Y	GAGGAAGACAAAT	.	92	7	88	0	.	0	0	0	0	0
TACC2	10579	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846988	123846988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TACC2-296	NM_206862	exon4	c.G4973T	p.G1658V	TTGGGGGTGAAAG	.	165	35	216	2	.	0	0	0	0	0
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129903482	129903482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MKI67-519	NM_002417	exon13	c.G6622T	p.D2208Y	GCTTGTCAGTGCA	.	158	68	149	1	.	6	2	4	0	0
MTG1	92170	hgsc.bcm.edu	37	10	135207754	135207754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MTG1-91	NM_138384	exon1	c.C30G	p.S10R	GTGCAGCGCCGCC	.	32	29	1	0	.	18	0	18	0	0
MUC5B	727897	bcgsc.ca	37	11	1262202	1262202	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_002458	exon31	c.G4092T	p.L1364L	AAACCTGAGGCAG	.	102	24	92	2	.	0	0	0	0	0
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945010	4945010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51G1-70	NM_001005237	exon1	c.T560C	p.M187T	AGCTTCATGATCT	.	89	15	85	0	.	0	0	0	0	0
OR51B2	79345	bcgsc.ca	37	11	5345495	5345495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51B2-71	NM_033180	exon1	c.G33T	p.L11F	AGTCAGCAAAAAA	.	262	13	314	3	.	0	0	0	0	0
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5475467	5475467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51I2-72	NM_001004754	exon1	c.C749A	p.A250E	TACTTGCATTTTA	.	129	20	175	0	.	0	0	0	0	0
UBQLN3	50613	broad.mit.edu;bcgsc.ca	37	11	5530029	5530029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBQLN3-93	NM_017481	exon2	c.C760A	p.L254I	TGCAAAGCACATT	.	102	5	99	0	.	0	0	0	0	0
PDE3B	5140	broad.mit.edu;bcgsc.ca	37	11	14865507	14865507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDE3B-90	NM_000922	exon12	c.G2455T	p.A819S	GCAGCTGCCATGC	.	80	71	92	2	.	0	0	0	0	0
SPTY2D1	144108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18636678	18636678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPTY2D1-90	NM_194285	exon3	c.G1143T	p.Q381H	GCTGGGCTGCCCA	.	76	14	110	1	.	4	4	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20907034	20907034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NELL1-155	NM_006157	exon5	c.C551A	p.P184Q	TTCCCCCAGGAAT	.	77	35	81	0	.	1	1	0	0	0
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24784833	24784833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LUZP2-92	NM_001252010	exon5	c.G375A	p.M125I	CAAAATGATCCGA	.	134	24	186	1	.	0	0	0	0	0
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30930510	30930510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCDC5-23	NM_020869	exon10	c.G1222T	p.E408X	TGTTTTCTTCTTT	.	88	11	66	0	.	0	0	0	0	0
CCDC73	493860	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	32739646	32739646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC73-91	NM_001008391	exon3	c.G183T	p.M61I	CTGTGTCTCCACA	.	10	7	11	0	.	0	0	0	0	0
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36597790	36597790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAG1-230	NM_000448	exon2	c.C2936A	p.A979D	TGAATGCCAGGCA	.	41	37	57	0	.	0	0	0	0	0
DGKZ	8525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	46397072	46397072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGKZ-676	NM_001105540	exon21	c.G2365T	p.D789Y	CAGGTGGATGGCG	.	93	48	25	0	.	6	2	4	0	0
OR4X2	119764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48267186	48267186	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4X2-68	NM_001004727	exon1	c.C531A	p.L177L	CCTTCTCAAACTT	.	70	37	121	0	.	0	0	0	0	0
OR4A16	81327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55110948	55110948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4A16-69	NM_001005274	exon1	c.C272T	p.S91F	CTATTTCCTTGTC	.	85	13	138	1	.	0	0	0	0	0
OR5M10	390167	broad.mit.edu;bcgsc.ca	37	11	56344908	56344908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001004741	exon1	c.G290T	p.C97F	GTGAAGCATCCAG	.	181	9	274	1	.	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57087809	57087809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNKS1BP1-91	NM_033396	exon3	c.G472T	p.A158S	TGGTGGCCGCGAA	.	60	28	59	0	.	17	9	8	0	0
OR5B12	390191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58206901	58206901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR5B12-68	NM_001004733	exon1	c.C724A	p.H242N	TAAGGTGGGAAGC	.	204	82	237	1	.	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	4	4	0	0	G|0.581;A|0.419	54	0	54	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574692	64574692	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MEN1-3017	NM_130804	exon7	c.799-1G>T	.	CAGCTTCTAGGAG	.	26	10	34	0	.	2	0	2	0	0
PACS1	55690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66001334	66001334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PACS1-74	NM_018026	exon16	c.C1917A	p.L639L	CATCCTCAGGTTC	.	132	70	143	0	.	8	4	4	0	0
CD248	57124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66083700	66083700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD248-154	NM_020404	exon1	c.G799T	p.D267Y	GCCCGTCTGCTGC	.	124	9	74	0	.	9	9	0	0	0
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67167109	67167110	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP1CA-659	NM_001008709	exon4	c.478_479del	p.160_160del	GTTTTCCACAGTT	.	120	20	182	0	.	0	0	0	0	0
FGF19	9965	hgsc.bcm.edu	37	11	69518485	69518485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FGF19-658	NM_005117	exon1	c.G160T	p.G54W	AGAGCCCGTGGGG	.	9	9	2	0	.	0	0	0	0	0
NADSYN1	55191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71184625	71184625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NADSYN1-92	NM_018161	exon8	c.G559T	p.D187Y	CACATCGACATGG	.	131	65	139	1	.	0	0	0	0	0
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74546991	74546991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RNF169-69	NM_001098638	exon6	c.C1343A	p.S448X	CCCTTTCAAAAGC	.	46	10	57	0	.	3	3	0	0	0
MYO7A	4647	broad.mit.edu	37	11	76905570	76905570	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYO7A-138	NM_000260	exon32	c.4323+1G>T	.	AAGAAGGTAGAAG	.	82	3	87	0	.	0	0	0	0	0
USP35	57558	broad.mit.edu	37	11	77920580	77920580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP35-637	NM_020798	exon10	c.C1679A	p.A560D	CCCCGGCCCCAAG	.	109	4	133	0	.	10	10	0	0	0
DLG2	1740	bcgsc.ca	37	11	83641481	83641481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DLG2-96	NM_001142699	exon15	c.G1386T	p.K462N	AGCAGGCTTATCA	.	172	39	210	4	.	2	2	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108380726	108380726	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EXPH5-95	NM_015065	exon6	c.G5508T	p.G1836G	TTCATTCCCAAGG	.	70	35	92	0	.	0	0	0	0	0
OR10G4	390264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123886949	123886949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR10G4-93	NM_001004462	exon1	c.C668A	p.S223Y	TCTGTTCCATCCT	.	221	97	285	1	.	0	0	0	0	0
BARX2	8538	broad.mit.edu;bcgsc.ca	37	11	129306690	129306690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BARX2-90	NM_003658	exon2	c.C232A	p.R78S	ATCACCCGCCAGC	.	138	11	159	1	.	0	0	0	0	0
ADAMTS8	11095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130275863	130275863	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAMTS8-226	NM_007037	exon9	c.G2260T	p.E754X	CCTGCTCTATGGC	.	94	46	99	1	.	0	0	0	0	0
IQSEC3	440073	hgsc.bcm.edu	37	12	247900	247900	+	Silent	SNP	G	G	A	rs7313003		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IQSEC3-560	NM_001170738	exon4	c.G1371A	p.E457E	GCCGGAGAGCGCG	.	4	4	0	0	G|0.768;A|0.232	0	0	0	0	0
CACNA2D4	93589	ucsc.edu;bcgsc.ca	37	12	1902879	1902879	+	Missense_Mutation	SNP	G	G	T	rs145150489	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA2D4-23	NM_172364	exon38	c.C3356A	p.P1119Q	AGGGGCGGCGAGG	.	379	57	179	3	G|0.998;A|0.002	1	1	0	0	0
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5685071	5685071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANO2-139	NM_020373	exon24	c.C2550A	p.F850L	GACGTTGAAAAAG	.	186	18	145	0	.	0	0	0	0	0
PIANP	196500	broad.mit.edu;ucsc.edu	37	12	6805620	6805620	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001244014	exon4	c.C594A	p.I198I	CTTGAAGATGATG	.	121	12	108	2	.	0	0	0	0	0
CD163	9332	broad.mit.edu;bcgsc.ca	37	12	7653770	7653770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD163-98	NM_203416	exon3	c.G422T	p.C141F	TGAGTACAGTTAC	.	169	8	133	1	.	2	2	0	0	0
PHC1	1911	broad.mit.edu	37	12	9085175	9085175	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PHC1-154	NM_004426	exon8	c.C1122A	p.I374I	ACAGATCCAGCCC	.	268	18	185	1	.	6	6	0	0	0
GABARAPL1	23710	broad.mit.edu;bcgsc.ca	37	12	10365807	10365807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABARAPL1-90	NM_031412	exon1	c.G79T	p.D27Y	TATCCGGACAGGG	.	258	71	123	2	.	121	68	53	0	0
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10777358	10777358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STYK1-1379	NM_018423	exon8	c.C818A	p.A273D	TCATAAGCCAGGC	.	258	63	164	0	.	0	0	0	0	0
GPRC5D	55507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13102863	13102863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPRC5D-90	NM_018654	exon1	c.G456T	p.M152I	TCTGGTCATGATG	.	271	38	171	1	.	0	0	0	0	0
GRIN2B	2904	bcgsc.ca	37	12	13761624	13761624	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRIN2B-231	NM_000834	exon9	c.C1923A	p.I641I	CAGGAAGATGACA	.	288	17	217	2	.	0	0	0	0	0
PLEKHA5	54477	bcgsc.ca	37	12	19475524	19475524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHA5-227	NM_001256470	exon20	c.C2371A	p.Q791K	GCCATTCAGACAG	.	210	20	173	2	.	17	17	0	0	0
ASUN	55726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27066421	27066421	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_018164	exon14	c.G1774T	p.E592X	CCTGTTCATAATC	.	100	28	93	0	.	50	46	4	0	0
KLHL42	57542	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	27933962	27933962	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_020782	exon1	c.C699A	p.A233A	GCTGGCCAACAAC	.	165	40	124	1	.	9	5	4	0	0
LRRK2	120892	broad.mit.edu	37	12	40689345	40689345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRK2-533	NM_198578	exon23	c.G2995T	p.A999S	ATTGATGCCCTAA	.	93	7	97	2	.	2	0	2	0	0
KANSL2	54934	broad.mit.edu;ucsc.edu	37	12	49075169	49075169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_017822	exon2	c.G247T	p.D83Y	ACCCATCTTTCTT	.	91	11	59	1	.	0	0	0	0	0
RND1	27289	broad.mit.edu	37	12	49254807	49254807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RND1-228	NM_014470	exon4	c.G426T	p.Q142H	CTGCTTCTGGTGG	.	122	15	93	2	.	0	0	0	0	0
ASIC1	41	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50471033	50471033	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001256830	exon2	c.C698A	p.S233X	TCAACTCGGGCCG	.	148	19	134	1	.	0	0	0	0	0
FAM186A	121006	bcgsc.ca	37	12	50727696	50727696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM186A-68	NM_001145475	exon5	c.C6694A	p.Q2232K	TTACCTGGTTGAA	.	238	9	164	2	.	0	0	0	0	0
KRT74	121391	broad.mit.edu;bcgsc.ca	37	12	52967318	52967318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT74-92	NM_175053	exon1	c.G244T	p.G82X	CCCCTCCATACCC	.	98	6	68	0	.	0	0	0	0	0
KRT72	140807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52992834	52992834	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT72-96	NM_001146225	exon2	c.G489T	p.L163L	CAAGTCCAGCTGC	.	119	31	103	1	.	0	0	0	0	0
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53189266	53189266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT3-90	NM_057088	exon1	c.C561A	p.I187I	GGGGTCGATCTCC	.	204	23	129	0	.	0	0	0	0	0
GPR84	53831	ucsc.edu	37	12	54756471	54756471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR84-523	NM_020370	exon2	c.C1165A	p.P389T	TCCGGGGCCCTCT	.	372	53	221	4	.	0	0	0	0	0
LACRT	90070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55025610	55025610	+	Missense_Mutation	SNP	C	C	A	rs201410599	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LACRT-90	NM_033277	exon4	c.G267T	p.E89D	ACTTTTCTCCACT	.	108	13	73	0	C|0.999;T|0.001	0	0	0	0	0
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522216	56522216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ESYT1-95	NM_015292	exon1	c.C113A	p.S38Y	CAGGTTCTGGGGG	.	91	22	39	0	.	26	18	8	0	0
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56716450	56716450	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAN2-702	NM_001127460	exon18	c.C2598A	p.G866G	CAGGCTGCCCCCT	.	178	44	124	2	.	12	8	4	0	0
MIP	4284	broad.mit.edu;bcgsc.ca	37	12	56845152	56845152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MIP-91	NM_012064	exon4	c.C704A	p.S235Y	AGGACAGACAGTC	.	211	20	161	2	.	4	4	0	0	0
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72017939	72017939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFC3H1-138	NM_144982	exon23	c.G4451T	p.R1484I	TGAACTCTAAACA	.	78	28	52	0	.	6	2	4	0	0
GLIPR1L1	256710	broad.mit.edu	37	12	75737704	75737704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR1L1-90	NM_152779	exon2	c.G406T	p.G136C	GTCTGTGGCCATT	.	120	3	74	0	.	0	0	0	0	0
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75804245	75804245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR1L2-91	NM_152436	exon2	c.G266T	p.R89I	CTGCTAGAGCATG	.	210	49	131	0	.	0	0	0	0	0
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77209691	77209691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_015336	exon7	c.C663A	p.D221E	TGGTGACAAGTAT	.	417	41	276	1	.	2	2	0	0	0
SLC6A15	55117	broad.mit.edu;bcgsc.ca	37	12	85266932	85266932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC6A15-93	NM_182767	exon7	c.C1043A	p.A348E	AATGTTGCCAGGA	.	216	13	168	2	.	0	0	0	0	0
DCN	1634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	91545457	91545457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCN-555	NM_001920	exon7	c.G859T	p.G287W	CCAGCCCACCAGG	.	160	17	114	0	.	8	8	0	0	0
DCN	1634	broad.mit.edu	37	12	91546934	91546934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCN-555	NM_001920	exon6	c.G685T	p.D229Y	TGCCATCAAGATG	.	146	16	129	2	.	8	8	0	0	0
PLEKHG7	440107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93149662	93149662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG7-23	NM_001004330	exon7	c.G552T	p.E184D	ACAGGAGATTATA	.	142	45	84	0	.	0	0	0	0	0
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	95434275	95434275	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NR2C1-187	NM_001032287	exon10	c.G1230T	p.S410S	AGGAATCGAAAGT	.	241	21	221	0	.	13	12	1	0	0
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95911959	95911959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP44-658	NM_032147	exon6	c.G2110A	p.D704N	AGGTATCAGCGTC	.	106	17	103	0	.	0	0	0	0	0
PRDM4	11108	broad.mit.edu;bcgsc.ca	37	12	108133237	108133237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRDM4-154	NM_012406	exon11	c.G2016T	p.K672N	AAGATTCTTCTCC	.	173	20	142	1	.	34	32	2	0	0
SART3	9733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108931880	108931880	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SART3-91	NM_014706	exon8	c.G1162C	p.A388P	CCATGGCCAAGAG	.	183	41	85	1	.	18	8	10	0	0
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109660636	109660636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACACB-98	NM_001093	exon25	c.G3711T	p.E1237D	CTACGAGCTGCGG	.	135	47	142	1	.	11	6	5	0	0
TRPV4	59341	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110230204	110230204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPV4-94	NM_021625	exon12	c.C1855A	p.L619I	AGACGAGCAGGAA	.	118	28	107	2	.	1	1	0	0	0
HVCN1	84329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111098996	111098996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HVCN1-91	NM_032369	exon4	c.G279T	p.R93S	CAGTTTCCTCAAC	.	301	76	253	0	.	2	2	0	0	0
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117013934	117013934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP1LC3B2-68	NM_001085481	exon2	c.C187A	p.L63I	AGTGAGCTCATCA	.	424	124	373	0	.	248	247	1	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120567240	120567240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GCN1L1-94	NM_006836	exon57	c.C7730A	p.A2577E	TTATTTGCCCACC	.	112	14	131	0	.	68	54	14	0	0
SIRT4	23409	broad.mit.edu	37	12	120750304	120750304	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIRT4-226	NM_012240	exon3	c.G543T	p.L181L	GGTGCTGCAAGAG	.	78	5	56	0	.	14	14	0	0	0
MLXIP	22877	bcgsc.ca	37	12	122623075	122623075	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLXIP-92	NM_014938	exon14	c.C2361A	p.I787I	GGAGATCGAGGAG	.	196	16	138	2	.	15	14	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123782680	123782680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SBNO1-292	NM_001167856	exon30	c.G3884T	p.C1295F	ATTTCACAAACTA	.	113	7	99	1	.	29	29	0	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu	37	12	124256213	124256213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon3	c.G181T	p.D61Y	GAAATGGACAAAG	.	89	10	98	2	.	0	0	0	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124317840	124317840	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon26	c.G4371T	p.L1457L	TTTTCTGCAAACT	.	191	40	180	1	.	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124399087	124399087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon60	c.G10210T	p.E3404X	GATGTTGAGATCA	.	77	13	64	0	.	0	0	0	0	0
DHX37	57647	broad.mit.edu;bcgsc.ca	37	12	125448959	125448959	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHX37-227	NM_032656	exon15	c.G2026T	p.E676X	CGGGCTCCGTCCG	.	70	6	93	0	.	1	1	0	0	0
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129028583	129028583	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132C-68	NM_001136103	exon3	c.C1056A	p.G352G	GGTGGGCAGCGGC	.	258	108	131	0	.	0	0	0	0	0
TMEM132D	121256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129559056	129559056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132D-106	NM_133448	exon9	c.C2664A	p.F888L	GGCTGGGAAGCTG	.	66	26	78	1	.	0	0	0	0	0
EP400NL	347918	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132599038	132599038	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	AGATGTGAATTCC	.	115	42	119	0	.	0	0	0	0	0
PARP4	143	hgsc.bcm.edu;broad.mit.edu	37	13	25016806	25016806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP4-94	NM_006437	exon29	c.G3465T	p.L1155F	AGATTTCAAGGTT	.	105	6	116	0	.	15	15	0	0	0
ATP8A2	51761	broad.mit.edu	37	13	26411330	26411330	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATP8A2-138	NM_016529	exon29	c.G2784T	p.L928L	CACTCTGGGAATC	.	79	19	87	2	.	1	0	1	0	0
B3GALTL	145173	bcgsc.ca	37	13	31843387	31843387	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	B3GALTL-92	NM_194318	exon8	c.C633A	p.S211S	GAAATCCGACTTT	.	33	32	42	2	.	1	1	0	0	0
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33316808	33316808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDS5B-94	NM_015032	exon23	c.G2555T	p.R852I	CCTTAAGATTGCT	.	73	32	104	0	.	3	2	1	0	0
ENOX1	55068	ucsc.edu	37	13	43986176	43986176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENOX1-92	NM_017993	exon5	c.G84T	p.L28F	ACTCCCCAAACCA	.	88	9	115	2	.	0	0	0	0	0
TPT1-AS1	100190939	bcgsc.ca	37	13	45964930	45964930	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	AGCTGTCAGGTCA	.	215	40	202	4	.	19	12	7	0	0
UTP14C	9724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52604696	52604696	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UTP14C-138	NM_021645	exon2	c.G1756T	p.E586X	GATGAAGAGGAGA	.	224	88	244	3	.	4	3	1	0	0
THSD1	55901	bcgsc.ca	37	13	52951587	52951587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	THSD1-94	NM_018676	exon5	c.G2518T	p.E840X	TGGTTTCATCCTC	.	317	32	406	4	.	4	4	0	0	0
PCDH9	5101	ucsc.edu;bcgsc.ca	37	13	67800034	67800034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDH9-96	NM_203487	exon2	c.G2539T	p.A847S	TCTGAGCTGCTTT	.	138	28	178	3	.	0	0	0	0	0
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99947317	99947317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR183-522	NM_004951	exon2	c.G1083C	p.K361N	ATTTCACTTTCCA	.	102	35	140	1	.	5	5	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103399003	103399003	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001146197	exon4	c.G4044T	p.V1348V	TTTCATCACTTTA	.	81	15	59	0	.	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	10	10	0	0	C|0.372;T|0.628	0	0	0	0	0
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113909353	113909353	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CUL4A-651	NM_001008895	exon18	c.G1945T	p.E649X	GAAGTGGAAGATG	.	270	94	230	0	.	14	13	1	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	49	6	22	0	.	7	7	0	0	0
OR4K15	81127	broad.mit.edu	37	14	20443680	20443680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4K15-69	NM_001005486	exon1	c.G3T	p.M1I	ACCCATGCTCACT	.	76	19	57	2	.	0	0	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF219-90	NM_001102454	exon3	c.698_703del	p.233_235del	GGGGTGGAGGCTG	.	42	19	1	0	.	0	0	0	0	0
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23521682	23521682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH24-90	NM_022478	exon8	c.G1363T	p.G455C	CCTCACCGAGCTC	.	120	12	62	0	.	3	0	3	0	0
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23791464	23791464	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001199864	exon4	c.G507A	p.E169E	GAACGAGGTAGAG	.	240	51	168	0	.	135	91	44	0	0
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24731331	24731331	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGM1-91	NM_000359	exon2	c.C228A	p.G76G	TCGAGTGCCAGAG	.	153	42	120	1	.	0	0	0	0	0
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901482	24901482	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KHNYN-93	NM_015299	exon3	c.C1015A	p.R339R	CAGTCCCGAGGAG	.	162	11	131	0	.	15	15	0	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	33291762	33291762	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP6-733	NM_004274	exon13	c.C4743A	p.G1581G	ATTGGGCATCTTT	.	103	28	99	0	.	0	0	0	0	0
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36191028	36191028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RALGAPA1-138	NM_194301	exon16	c.C2132A	p.S711X	TCAACTGAAACTT	.	94	18	65	0	.	1	1	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	8	8	0	0	C|0.569;G|0.431	4	0	4	0	0
SOS2	6655	bcgsc.ca	37	14	50616832	50616832	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SOS2-849	NM_006939	exon14	c.G2278T	p.E760X	GCCATTCAATTGG	.	223	57	176	4	.	12	12	0	0	0
NID2	22795	broad.mit.edu	37	14	52508850	52508850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NID2-158	NM_007361	exon7	c.G1798T	p.G600C	CAGAGCCAGGTTT	.	74	14	45	1	.	4	4	0	0	0
ERO1L	30001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53110333	53110333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ERO1L-90	NM_014584	exon16	c.G1362T	p.V454V	TTCTTTCACACTT	.	43	10	48	0	.	77	66	11	0	0
FERMT2	10979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386013	53386013	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FERMT2-68	NM_001135000	exon3	c.G219T	p.L73L	TGTCTTCAGAAGC	.	158	54	138	1	.	0	0	0	0	0
PELI2	57161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56755230	56755230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PELI2-91	NM_021255	exon4	c.G385T	p.A129S	GACGAAGCCCAGA	.	175	29	160	0	.	0	0	0	0	0
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57103241	57103241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_017799	exon15	c.C1794A	p.F598L	ACCGTTCTTCATC	.	217	22	186	2	.	10	10	0	0	0
RTN1	6252	ucsc.edu;bcgsc.ca	37	14	60212795	60212795	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RTN1-516	NM_021136	exon2	c.G646T	p.E216X	TATCTTCCAGCTC	.	155	59	129	3	.	0	0	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64580141	64580141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNE2-164	NM_182914	exon66	c.G12692T	p.R4231M	AAACTAGGCCGGA	.	83	24	66	0	.	1	1	0	0	0
ADAM21	8747	broad.mit.edu	37	14	70924812	70924812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAM21-92	NM_003813	exon2	c.C596T	p.S199F	CAAAATCTGCTGG	.	108	4	81	1	.	0	0	0	0	0
RBM25	58517	broad.mit.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RBM25-91	NM_021239	exon11	c.1195_1196del	p.399_399del	CGGGAAAGAGAGA	.	140	8	161	0	.	0	0	0	0	0
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75359678	75359678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DLST-227	NM_001933	exon8	c.C584A	p.S195Y	CTCCTTCTGGCAA	.	103	15	103	0	.	0	0	0	0	0
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101011394	101011394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BEGAIN-68	NM_020836	exon4	c.C186A	p.S62R	GTAGTTGCTCTGA	.	72	7	50	0	.	0	0	0	0	0
HSP90AA1	3320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102551693	102551693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HSP90AA1-949	NM_001017963	exon5	c.G971T	p.R324I	TTTATTCTTCGTT	.	192	58	154	1	.	194	137	57	0	0
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105222044	105222044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIVA1-514	NM_006427	exon2	c.C196A	p.H66N	GTCGTTCACCTGC	.	117	33	95	0	.	185	127	58	0	0
BRF1	2972	broad.mit.edu;ucsc.edu	37	14	105688210	105688210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BRF1-155	NM_001519	exon11	c.G1090T	p.D364Y	CTGTGTCCTCCTC	.	83	4	77	0	.	17	14	3	0	0
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28441707	28441707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HERC2-234	NM_004667	exon51	c.G8020T	p.A2674S	CATTGGCACTGAA	.	394	94	285	1	.	0	0	0	0	0
TJP1	7082	broad.mit.edu;ucsc.edu	37	15	30018654	30018654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TJP1-95	NM_175610	exon18	c.G2341T	p.G781C	ACCAACCATCATT	.	108	15	81	1	.	1	0	1	0	0
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31217483	31217483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAN1-90	NM_014967	exon9	c.G2326T	p.D776Y	GTGCAAGATGTGA	.	69	15	46	0	.	4	2	2	0	0
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31342674	31342674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM1-94	NM_001252020	exon11	c.G1426T	p.G476W	CTTTCCCTTTCTT	.	151	31	126	0	.	0	0	0	0	0
EMC4	51234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34517318	34517318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_016454	exon1	c.G3T	p.M1I	TGCCATGACGGCC	.	147	10	86	0	.	129	113	16	0	0
FAM98B	283742	broad.mit.edu;bcgsc.ca	37	15	38762452	38762452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM98B-515	NM_001042429	exon4	c.C377A	p.A126D	TTCAAGCTTCACA	.	151	6	105	0	.	11	10	1	0	0
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38808534	38808534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASGRP1-697	NM_001128602	exon6	c.C539A	p.S180Y	TTCCTGGACCAGT	.	150	23	84	0	.	0	0	0	0	0
CHP1	11261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41523643	41523643	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_007236	exon1	c.C63A	p.T21T	GGAGACCGGCTGT	.	203	56	118	1	.	0	0	0	0	0
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41861213	41861213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TYRO3-1388	NM_006293	exon9	c.C1245A	p.D415E	TCATGACCGTGCA	.	112	10	60	0	.	0	0	0	0	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54825158	54825158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UNC13C-51	NM_001080534	exon24	c.G5590T	p.E1864X	AGTTTCGAACTAA	.	116	33	142	0	.	0	0	0	0	0
CGNL1	84952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57731629	57731629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CGNL1-100	NM_001252335	exon3	c.G1432T	p.E478X	AGTCAGGAAAGTA	.	171	24	137	1	.	0	0	0	0	0
VPS13C	54832	bcgsc.ca	37	15	62209759	62209759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13C-92	NM_020821	exon60	c.G7836T	p.K2612N	TTCTTCCTTCCAG	.	184	15	163	2	.	3	2	1	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63017258	63017258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TLN2-573	NM_015059	exon24	c.G3210T	p.K1070N	TGCCAAGATGGCA	.	56	20	35	0	.	0	0	0	0	0
CLPX	10845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65443246	65443246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLPX-90	NM_006660	exon14	c.C1817A	p.P606Q	TTTGTTGGAGCCC	.	37	16	40	0	.	0	0	0	0	0
SNAPC5	10302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66787699	66787699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNAPC5-90	NM_006049	exon2	c.C149A	p.S50Y	TGAGAAGACAGCA	.	149	44	137	1	.	20	17	3	0	0
CD276	80381	broad.mit.edu	37	15	73994904	73994904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD276-91	NM_025240	exon3	c.G388T	p.G130C	GATTTCGGCAGCG	.	149	17	70	2	.	112	107	5	0	0
CSK	1445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75091628	75091628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CSK-510	NM_001127190	exon6	c.G258T	p.K86N	CGGCAAGATCACA	.	92	31	78	0	.	31	27	4	0	0
SNUPN	10073	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75890858	75890858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNUPN-91	NM_001042581	exon9	c.G924T	p.Q308H	CATAATCTGCTGG	.	98	9	109	1	.	43	33	10	0	0
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	78732221	78732221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IREB2-90	NM_004136	exon2	c.A104G	p.Y35C	CCAAGTATGGTAA	.	52	4	52	0	.	0	0	0	0	0
MESDC1	59274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81295513	81295513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MESDC1-90	NM_022566	exon1	c.C901A	p.L301I	TGCGTGCTCCTGA	.	72	25	27	0	.	28	15	13	0	0
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86806035	86806035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152336	exon9	c.C858A	p.N286K	CGTGAACAAGCTG	.	195	29	163	1	.	0	0	0	0	0
KIF7	374654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90190829	90190829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIF7-523	NM_198525	exon6	c.C1558A	p.Q520K	GCACCTGCAGTTT	.	60	27	67	1	.	0	0	0	0	0
HAGHL	84264	hgsc.bcm.edu	37	16	778414	778414	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HAGHL-90	NM_032304	exon4	c.C387A	p.A129A	ACCCGCCCTGTTC	.	32	9	9	0	.	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1537885	1537885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTX4-90	NM_001013658	exon2	c.C213A	p.F71L	GCTCCGGAACCGG	.	192	25	141	0	.	0	0	0	0	0
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3843582	3843582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CREBBP-1807	NM_001079846	exon4	c.G1021T	p.A341S	CTGTTGCAATTGC	.	116	34	130	1	.	3	2	1	0	0
RSL1D1	26156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11940360	11940360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RSL1D1-90	NM_015659	exon5	c.C633A	p.C211X	CTACCTGCAAGAA	.	113	27	65	0	.	0	0	0	0	0
PDXDC1	23042	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15102644	15102644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDXDC1-91	NM_015027	exon7	c.G588T	p.L196F	CGGCTTGCCCTTC	.	254	33	255	3	.	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	220	7	179	0	G|0.997;A|0.003	1	1	0	0	0
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20787314	20787314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSM3-91	NM_005622	exon3	c.C373A	p.L125M	GTAATTCTGATTC	.	134	12	100	0	.	125	121	4	0	0
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23491135	23491135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GGA2-91	NM_015044	exon11	c.G1080T	p.Q360H	CCCCATCTGCGCA	.	117	26	97	0	.	60	43	17	0	0
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27454345	27454345	+	Missense_Mutation	SNP	C	C	A	rs146177564	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL21R-660	NM_181079	exon6	c.C481A	p.R161S	TCCTGGCGCTCAG	.	221	50	175	2	C|1.000;T|0.000	1	0	1	0	0
KCTD13	253980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29918291	29918291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCTD13-90	NM_178863	exon6	c.G892T	p.E298X	TCTCTTCATCCTC	.	147	21	110	0	.	51	45	6	0	0
GDPD3	79153	broad.mit.edu	37	16	30123477	30123477	+	Silent	SNP	C	C	A	rs150465018	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GDPD3-90	NM_024307	exon6	c.G549T	p.S183S	CATGACCGAGCTC	.	123	20	88	2	C|1.000;T|0.000	1	1	0	0	0
CORO1A	11151	broad.mit.edu	37	16	30198031	30198031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CORO1A-226	NM_001193333	exon4	c.G311T	p.C104F	AGGACTGCACAGT	.	73	4	38	1	.	0	0	0	0	0
ZNF768	79724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30535865	30535865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF768-90	NM_024671	exon2	c.G1596T	p.Q532H	GGTCCGCTGGTGG	.	134	47	15	0	.	139	90	49	0	0
BCKDK	10295	broad.mit.edu;bcgsc.ca	37	16	31121421	31121421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BCKDK-765	NM_005881	exon5	c.C399A	p.F133L	TGCCTTCCAGAAG	.	196	8	168	0	.	137	134	3	0	0
ITGAM	3684	ucsc.edu;bcgsc.ca	37	16	31336693	31336693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGAM-226	NM_001145808	exon20	c.G2476T	p.D826Y	CCGCTTGACCTGT	.	190	85	162	2	.	3	1	2	0	0
ZNF267	10308	hgsc.bcm.edu	37	16	31927495	31927495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF267-138	NM_003414	exon4	c.A1925G	p.N642S	CCTTCAACTATAG	.	99	5	102	0	.	11	11	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	0	0	0	0	0
CCDC135	84229	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57732903	57732903	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC135-90	NM_032269	exon3	c.C345A	p.L115L	GCCCCTCTTCCTG	.	125	12	115	1	.	0	0	0	0	0
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57935280	57935280	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNGB1-137	NM_001297	exon29	c.G2952T	p.L984L	GTTGGGCAGGTAG	.	143	16	88	0	.	0	0	0	0	0
LRRC29	26231	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67241849	67241849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC29-226	NM_001004055	exon5	c.T430A	p.W144R	GGGCCCAGCCCTT	.	108	15	89	1	.	4	4	0	0	0
KCTD19	146212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67333415	67333415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCTD19-69	NM_001100915	exon6	c.C837A	p.S279R	CTCCAGGCTGGCT	.	86	9	57	1	.	0	0	0	0	0
VAC14	55697	bcgsc.ca	37	16	70726795	70726795	+	Silent	SNP	C	C	A	rs2278983	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VAC14-227	NM_018052	exon18	c.G2115T	p.P705P	GCTCTGCGGCAGG	.	133	5	59	0	A|0.318;C|0.681;T|0.000	76	76	0	0	0
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	71209570	71209570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HYDIN-92	NM_001198542	exon5	c.C537A	p.H179Q	CACTTTGTGGCCA	.	124	8	97	0	.	1	0	1	0	0
RFWD3	55159	bcgsc.ca	37	16	74670456	74670456	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RFWD3-522	NM_018124	exon8	c.C1214A	p.S405X	TGATGTGACGTAA	.	75	16	49	1	.	8	7	1	0	0
PKD1L2	114780	bcgsc.ca	37	16	81249935	81249935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PKD1L2-92	NM_001076780	exon2	c.C378A	p.D126E	GCAGGTGTCAGGG	.	166	67	126	3	.	0	0	0	0	0
FOXC2	2303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	86601196	86601196	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FOXC2-226	NM_005251	exon1	c.C255A	p.I85I	GGCCATCCAGAAC	.	415	124	312	1	.	1	1	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	17	11	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	18	0	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	12	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	15	12	1	0	.	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	8	8	0	0	C|0.015;A|0.985	0	0	0	0	0
TP53	7157	hgsc.bcm.edu	37	17	7579521	7579521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TP53-70225	NM_000546	exon4	c.G166T	p.E56X	GGTCTTCAGTGAA	.	23	9	34	1	.	10	10	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7579722	7579722	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TP53-70225	NM_000546	exon4	c.75-1G>T	.	GGAAGTCTGAAAG	.	57	21	42	0	.	4	0	4	0	0
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu	37	17	12853032	12853032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP44-90	NM_014859	exon12	c.G1040T	p.W347L	ATGAGTGGATCCA	.	94	7	123	0	.	0	0	0	0	0
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21215491	21215491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP2K3-790	NM_145109	exon10	c.G812T	p.W271L	AGTCCTGGGGGAC	.	81	8	102	0	.	50	48	2	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	7	7	0	0	G|0.001;C|0.999	2	0	2	0	0
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28601155	28601155	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BLMH-91	NM_000386	exon7	c.C706T	p.R236X	TGTCTCGATATTC	.	55	12	75	0	.	9	9	0	0	0
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29848225	29848225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C605A	p.S202Y	ACCTTTCTACACA	.	112	12	141	0	.	1	1	0	0	0
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29848320	29848320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C700A	p.P234T	CCTTGCCCCGATG	.	177	79	205	0	.	1	0	1	0	0
SLFN14	342618	broad.mit.edu;bcgsc.ca	37	17	33880003	33880003	+	Silent	SNP	C	C	G	rs28498569	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLFN14-1	NM_001129820	exon3	c.G1650C	p.V550V	GGAGACCACCACC	.	60	7	75	0	C|0.765;G|0.235	0	0	0	0	0
GAS2L2	246176	broad.mit.edu;ucsc.edu	37	17	34072812	34072812	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GAS2L2-227	NM_139285	exon6	c.C1704A	p.V568V	TGCCATGACCTGG	.	73	7	76	1	.	0	0	0	0	0
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35468526	35468526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACACA-154	NM_198834	exon52	c.G6505T	p.D2169Y	CCAGATCCTTTCT	.	65	8	92	0	.	15	15	0	0	0
KRT39	390792	bcgsc.ca	37	17	39116728	39116728	+	Missense_Mutation	SNP	G	G	A	rs17843021	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_213656	exon6	c.C1022T	p.T341M	GTCTCCGTTAGGA	.	83	5	92	0	G|0.868;A|0.132	0	0	0	0	0
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140279	39140279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_182497	exon3	c.G247T	p.G83W	ACACCCCATCCTC	.	125	54	155	0	.	0	0	0	0	0
KRTAP1-3	81850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190809	39190809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_030966	exon1	c.G265T	p.G89C	TGCCACCACCAAT	.	91	27	121	1	.	0	0	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324355	39324355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP4-3-22	NM_033187	exon1	c.T70A	p.C24S	GGCAGCAGCTCTC	.	164	22	168	0	.	0	0	0	0	0
KRT33B	3884	broad.mit.edu	37	17	39520197	39520197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT33B-90	NM_002279	exon7	c.C1106A	p.S369Y	GGGTTGGAGGGCA	.	103	3	137	0	.	0	0	0	0	0
RND2	8153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41180515	41180515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RND2-227	NM_005440	exon5	c.C502A	p.R168S	TCTGAGCGCAGCG	.	107	9	152	0	.	5	5	0	0	0
FMNL1	752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43322367	43322367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FMNL1-91	NM_005892	exon21	c.G2620T	p.D874Y	TCGACTGATCGCA	.	97	41	105	2	.	2	1	1	0	0
NPEPPS	9520	broad.mit.edu;bcgsc.ca	37	17	45668234	45668234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NPEPPS-90	NM_006310	exon10	c.G1247T	p.S416I	ATAACAGCCATCC	.	217	17	287	0	.	45	39	6	0	0
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47007866	47007866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNF8-90	NM_007241	exon8	c.G748T	p.A250S	CCTCAGCTGTAAT	.	20	6	21	0	.	42	38	4	0	0
PRKAR1A	5573	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66526420	66526420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRKAR1A-1141	NM_212472	exon11	c.G976T	p.E326X	CCAGGTGAAATTG	.	112	29	139	1	.	0	0	0	0	0
MAP2K6	5608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67515498	67515498	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP2K6-1404	NM_002758	exon5	c.G291T	p.L97L	GCTACTGATGGAT	.	189	89	252	3	.	0	0	0	0	0
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171641	68171641	+	Missense_Mutation	SNP	G	G	T	rs199473380		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNJ2-90	NM_000891	exon2	c.G461T	p.C154F	ATGAATGCCCAAT	.	87	36	105	0	.	0	0	0	0	0
SSTR2	6752	ucsc.edu;bcgsc.ca	37	17	71166384	71166384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SSTR2-522	NM_001050	exon2	c.C926A	p.P309H	CCAACCCTATCCT	.	135	54	178	2	.	0	0	0	0	0
MRPS7	51081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73258729	73258729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPS7-90	NM_015971	exon2	c.G235T	p.A79S	GCTCCAGCAGGGA	.	50	19	82	0	.	43	24	19	0	0
MRPL38	64978	broad.mit.edu;bcgsc.ca	37	17	73898152	73898152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL38-46	NM_032478	exon3	c.C331A	p.Q111K	GCTCCTGGATGGC	.	110	22	165	2	.	45	42	3	0	0
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76202078	76202078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFMID-136	NM_001145526	exon10	c.G847T	p.D283Y	GATGTGGACCACT	.	83	21	106	0	.	14	12	2	0	0
LOC100653515	0	broad.mit.edu	37	17	76886822	76886822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001243540	exon3	c.G1764T	p.M588I	TCGGATCATCTGA	.	52	10	57	2	.	0	0	0	0	0
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77984098	77984098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D16-90	NM_019020	exon3	c.G640T	p.E214X	ACAGTTCCAAAGA	.	152	75	174	0	.	1	0	1	0	0
FSCN2	25794	hgsc.bcm.edu	37	17	79504073	79504073	+	Silent	SNP	C	C	T	rs143561119	by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001077182	exon5	c.C1518T	p.D506D	TGCCGACGCCCCG	.	7	6	0	0	C|0.964;T|0.036	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	9	7	0	0	T|0.941;C|0.059	0	0	0	0	0
TWSG1	57045	broad.mit.edu	37	18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TWSG1-92	NM_020648	exon5	c.G635T	p.G212V	ACTATGGTAGTAA	.	62	4	92	0	.	5	5	0	0	0
ANKRD30B	374860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14748544	14748544	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD30B-24	NM_001145029	exon1	c.C126A	p.I42I	GAAGATCCATACA	.	79	51	100	1	.	0	0	0	0	0
ROCK1	6093	broad.mit.edu	37	18	18586509	18586509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ROCK1-1026	NM_005406	exon16	c.G1688T	p.R563I	CTCAATCTTACAG	.	60	9	61	2	.	6	3	3	0	0
DSC3	1825	broad.mit.edu	37	18	28610987	28610987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DSC3-94	NM_024423	exon3	c.G306T	p.R102S	CTGTTTCCTTTTG	.	99	4	95	1	.	0	0	0	0	0
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34320707	34320707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FHOD3-139	NM_025135	exon18	c.C3140A	p.A1047E	GCAGTGCAGAGCA	.	160	35	167	2	.	27	24	3	0	0
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43221304	43221304	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC14A2-93	NM_001242692	exon9	c.C1122A	p.I374I	CCTCATCTGTGGT	.	79	30	102	0	.	0	0	0	0	0
SKA1	220134	ucsc.edu	37	18	47908517	47908517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SKA1-90	NM_001039535	exon4	c.G232T	p.E78X	TCTCTTGAAGAAG	.	171	16	128	3	.	2	2	0	0	0
ALPK2	115701	broad.mit.edu	37	18	56171296	56171296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ALPK2-765	NM_052947	exon11	c.G6114T	p.V2038V	ATACTTCACAAAT	.	86	4	114	1	.	0	0	0	0	0
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60036497	60036497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNFRSF11A-659	NM_003839	exon9	c.C1347G	p.C449W	AGGCTGCCGGAAC	.	42	35	48	0	.	0	0	0	0	0
CCDC102B	79839	broad.mit.edu	37	18	66505987	66505987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC102B-93	NM_001093729	exon5	c.G651T	p.M217I	GGAGATGAAGCCC	.	101	15	81	3	.	0	0	0	0	0
NFATC1	4772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77246918	77246918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NFATC1-290	NM_172387	exon9	c.C2724A	p.D908E	GTTGGACCAGTTG	.	98	6	61	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1047284	1047284	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCA7-98	NM_019112	exon15	c.C1974A	p.A658A	TGCGGCCTGCGGC	.	60	9	34	0	.	1	1	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912817	1912817	+	Silent	SNP	C	C	T	rs35870594	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAT3-154	NM_138422	exon2	c.C771T	p.Y257Y	CACCTACGACTTC	.	5	4	0	0	C|0.899;T|0.101	2	1	1	0	0
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2434856	2434856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LMNB2-290	NM_032737	exon6	c.G911A	p.R304H	TCCTCGCGAGCCG	.	105	26	41	0	.	12	10	2	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3644184	3644184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PIP5K1C-267	NM_001195733	exon12	c.C1411A	p.P471T	CGGTGGGCCCCAG	.	129	6	33	1	.	13	12	1	0	0
TICAM1	148022	bcgsc.ca	37	19	4817397	4817397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TICAM1-153	NM_182919	exon2	c.G993T	p.Q331H	TGGCGTCTGGTCT	.	96	42	62	2	.	2	2	0	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7516148	7516148	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF18-228	NM_001130955	exon6	c.G1287A	p.T429T	GAACACGGAAGGT	.	164	5	117	0	.	0	0	0	0	0
STXBP2	6813	broad.mit.edu;bcgsc.ca	37	19	7708095	7708095	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STXBP2-91	NM_001272034	exon13	c.C1104T	p.F368F	GCACTTCAAGGGC	.	86	26	52	1	.	44	36	8	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964190	7964190	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC8E-92	NM_001268284	exon4	c.G783T	p.L261L	GGTGCTGAAAGTG	.	257	10	199	1	.	5	2	3	0	0
CDC37	11140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10503780	10503780	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDC37-522	NM_007065	exon7	c.C963A	p.I321I	CTTGCTGATGGCG	.	70	18	56	1	.	375	297	78	0	0
PDE4A	5141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10574513	10574513	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDE4A-523	NM_001111307	exon14	c.C1788A	p.T596T	CCCCACCAAGCCG	.	324	91	249	4	.	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	118	7	15	0	.	17	15	2	0	0
CNN1	1264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11657510	11657510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNN1-90	NM_001299	exon3	c.C206A	p.P69Q	TGCAGCCAGGCTC	.	138	45	69	0	.	10	10	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA1A-67	NM_001127221	exon19	c.G2754C	p.E918D	CTCGCCCTCCCAG	.	13	5	0	0	C|0.363;G|0.637	0	0	0	0	0
PALM3	342979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14169968	14169968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PALM3-24	NM_001145028	exon1	c.G4T	p.A2S	TCTCCGCCATGGG	.	111	7	84	0	.	0	0	0	0	0
ZNF333	84449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14815966	14815966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF333-92	NM_032433	exon6	c.G407T	p.W136L	CGCCTTGGTCTCT	.	94	28	53	2	.	2	1	1	0	0
AKAP8	10270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15482785	15482785	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP8-290	NM_005858	exon7	c.C1016A	p.S339X	TCTCCTGAGCGGA	.	149	18	110	1	.	13	12	1	0	0
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15507978	15507978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP8L-1	NM_014371	exon12	c.C1519A	p.H507N	GGTTGTGATCCAT	.	188	22	141	0	.	203	174	29	0	0
CYP4F12	66002	broad.mit.edu;ucsc.edu	37	19	15789193	15789193	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP4F12-95	NM_023944	exon3	c.C321A	p.I107I	CACCATCCGGTCT	.	188	19	126	2	.	0	0	0	0	0
CYP4F2	8529	ucsc.edu;bcgsc.ca	37	19	16000335	16000335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP4F2-92	NM_001082	exon7	c.G816T	p.Q272H	CCGCTCCTGGATG	.	398	110	298	3	.	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17394631	17394631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152363	exon5	c.G1058T	p.C353F	GCCCTTGCCGGCA	.	86	10	81	0	.	0	0	0	0	0
SLC27A1	376497	ucsc.edu;bcgsc.ca	37	19	17599870	17599870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC27A1-226	NM_198580	exon6	c.C940T	p.R314C	GTCCTCCGCAAGA	.	332	151	212	10	.	7	2	5	0	0
FAM129C	199786	broad.mit.edu	37	19	17648324	17648324	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM129C-90	NM_001098524	exon6	c.G660T	p.L220L	GGCCCTGCAGGGT	.	37	4	20	0	.	0	0	0	0	0
MAST3	23031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18241370	18241370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAST3-502	NM_015016	exon13	c.G1203T	p.Q401H	CAAACAGAACTTG	.	232	25	196	1	.	2	2	0	0	0
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu	37	19	22363229	22363229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF676-90	NM_001001411	exon3	c.C1290A	p.F430L	CCAGCTGAAGGCT	.	60	8	29	0	.	0	0	0	0	0
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24309378	24309378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF254-90	NM_203282	exon4	c.C576A	p.C192X	ATTTTGCATGCTT	.	111	10	66	0	.	8	7	1	0	0
LRP3	4037	hgsc.bcm.edu;broad.mit.edu	37	19	33696766	33696766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRP3-92	NM_002333	exon5	c.G1090T	p.V364L	TACCAGGTGAAGG	.	83	6	35	0	.	27	19	8	0	0
FFAR3	2865	broad.mit.edu;mdanderson.org	37	19	35850698	35850698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FFAR3-90	NM_005304	exon2	c.G906T	p.Q302H	GTGGCAGCAGGAG	.	923	106	645	1	.	0	0	0	0	0
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831144	36831144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFP14-91	NM_020917	exon5	c.G1584T	p.K528N	ATGAATCTTCTGA	.	102	16	83	0	.	4	4	0	0	0
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38378662	38378662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_031951	exon6	c.G5532T	p.K1844N	CAGATTCTTCTTT	.	104	23	81	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38573333	38573333	+	Silent	SNP	C	C	T	rs61729132	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIPA1L3-91	NM_015073	exon3	c.C1128T	p.S376S	CGCTTCCGCCGCC	.	65	35	3	0	C|0.998;T|0.002	1	1	0	0	0
CATSPERG	57828	bcgsc.ca;mdanderson.org	37	19	38858328	38858328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CATSPERG-92	NM_021185	exon25	c.C2842A	p.L948M	TATGTTCTGCTGG	.	188	78	101	4	.	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	20	9	0	0	T|0.545;C|0.455	0	0	0	0	0
CYP2B6	1555	broad.mit.edu;ucsc.edu	37	19	41518259	41518259	+	Missense_Mutation	SNP	C	C	A	rs138030127	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2B6-92	NM_000767	exon7	c.C1021A	p.H341N	GAGCTTCATGACC	.	126	16	74	2	C|0.999;G|0.001	0	0	0	0	0
ARHGEF1	9138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42410903	42410903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF1-293	NM_199002	exon28	c.G2749T	p.G917W	CAGCTTGGGGGGA	.	137	31	79	0	.	37	30	7	0	0
CKM	1158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45822926	45822926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CKM-91	NM_001824	exon2	c.C46A	p.P16T	CCTCAGGCTTGTA	.	372	106	283	1	.	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	16	16	1	0	C|0.254;G|0.746	2	0	2	0	0
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49227597	49227597	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASIP1-228	NM_017805	exon10	c.C2541A	p.L847L	CACCTTGAGCAGG	.	189	51	137	0	.	1	0	1	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	32	14	4	0	A|0.868;G|0.132	0	0	0	0	0
SLC6A16	28968	broad.mit.edu;bcgsc.ca	37	19	49793931	49793931	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC6A16-94	NM_014037	exon11	c.C1872A	p.I624I	AAAGATGATTAGC	.	193	14	161	1	.	0	0	0	0	0
SCAF1	58506	broad.mit.edu;bcgsc.ca	37	19	50157655	50157655	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCAF1-68	NM_021228	exon8	c.G3366T	p.A1122A	CCGAGCGAAGGCC	.	230	10	176	0	.	110	104	5	1	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	19	19	0	0	T|0.228;C|0.772	0	0	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51844464	51844464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001163922	exon2	c.G838T	p.E280X	TGACCTCAGCCGT	.	143	4	86	0	.	0	0	0	0	0
NKG7	4818	hgsc.bcm.edu;broad.mit.edu	37	19	51875493	51875493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NKG7-90	NM_005601	exon2	c.C226A	p.L76M	GGACCAGGAAGCT	.	98	5	80	0	.	1	1	0	0	0
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52888417	52888417	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001145434	exon4	c.C1584A	p.V528V	CAAGGTCTTCAGC	.	180	17	146	0	.	23	21	2	0	0
CNOT3	4849	ucsc.edu;bcgsc.ca	37	19	54656063	54656063	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNOT3-93	NM_014516	exon14	c.1705+1G>A	.	AGCGAGGTGAGGG	.	268	33	167	3	.	3	1	2	0	0
RPS9	6203	broad.mit.edu	37	19	54705408	54705408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RPS9-153	NM_001013	exon3	c.G151T	p.A51S	ACCCTGGCCAAGA	.	107	4	56	0	.	1906	1903	0	1	2
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803031	54803031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LILRA3-91	NM_006865	exon4	c.G646T	p.G216W	GGAGCCCCAGGAG	.	228	29	174	1	.	2	2	0	0	0
SYT5	6861	hgsc.bcm.edu	37	19	55684927	55684927	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYT5-90	NM_003180	exon9	c.C1086A	p.A362A	CGGGTTGGCCAGC	.	14	5	1	0	.	0	0	0	0	0
SSC5D	284297	broad.mit.edu;bcgsc.ca	37	19	56024505	56024505	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144950	exon13	c.C2913A	p.G971G	CCCAGGCAGTCCT	.	204	12	101	1	.	0	0	0	0	0
NLRP13	126204	broad.mit.edu	37	19	56410249	56410249	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NLRP13-211	NM_176810	exon10	c.C2844A	p.L948L	ATGGCTGAGGGCA	.	125	5	70	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	15	12	0	0	.	0	0	0	0	0
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952598	56952598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF667-91	NM_022103	exon5	c.G1766T	p.G589V	GCCTTCCCACATT	.	111	27	65	0	.	13	7	6	0	0
ZNF835	90485	hgsc.bcm.edu	37	19	57175988	57175988	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF835-72	NM_001005850	exon2	c.G579T	p.P193P	GCGGTGCGGCTTC	.	55	33	2	0	.	0	0	0	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58004403	58004403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF419-90	NM_001098491	exon5	c.C481A	p.Q161K	TCCTTGCAAAGCA	.	448	43	291	0	.	8	6	2	0	0
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58384936	58384936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144989	exon3	c.G1822T	p.E608X	CACATTCTCCACA	.	116	31	100	0	.	5	2	3	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	218	88	91	0	.	2	2	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	173	55	81	0	.	1	1	0	0	0
C19orf18	147685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58485719	58485719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C19orf18-91	NM_152474	exon1	c.G82T	p.D28Y	GTCCATCTGCATA	.	138	32	102	1	.	0	0	0	0	0
RPS5	6193	broad.mit.edu;bcgsc.ca	37	19	58905869	58905869	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RPS5-90	NM_001009	exon5	c.C453A	p.I151I	GGCCATCTGGCTG	.	247	15	203	1	.	2	2	0	0	0
ZNF584	201514	bcgsc.ca	37	19	58929136	58929136	+	Missense_Mutation	SNP	G	G	T	rs3764534	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF584-90	NM_173548	exon4	c.G1251T	p.K417N	TGGGAAGGTCGTT	.	258	24	188	1	G|0.453;A|0.547	44	39	5	0	0
C2orf50	130813	bcgsc.ca	37	2	11284210	11284210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C2orf50-90	NM_182500	exon3	c.G462T	p.K154N	GAAGAAGCTGGAG	.	172	33	218	4	.	0	0	0	0	0
AGBL5	60509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27290394	27290394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AGBL5-154	NM_021831	exon12	c.C2122A	p.Q708K	CAGCAGCAGCCCC	.	102	32	118	1	.	5	2	3	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu	37	2	36583544	36583544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIM1-118	NM_016441	exon1	c.T109G	p.C37G	CTGGTCTGCCTGC	.	53	8	14	0	.	1	1	0	0	0
HEATR5B	54497	broad.mit.edu	37	2	37215999	37215999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HEATR5B-142	NM_019024	exon35	c.C5701A	p.Q1901K	TGGCTTGAACCTA	.	33	6	53	2	.	0	0	0	0	0
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40657111	40657111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC8A1-93	NM_001252624	exon1	c.G310T	p.E104X	TGACTTCTATAGA	.	60	32	60	0	.	0	0	0	0	0
ASPRV1	151516	ucsc.edu;bcgsc.ca	37	2	70188113	70188113	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ASPRV1-69	NM_152792	exon1	c.G708T	p.L236L	GGGCTGCAGGGTG	.	123	21	158	2	.	4	4	0	0	0
ANKRD53	79998	hgsc.bcm.edu	37	2	71206267	71206267	+	Missense_Mutation	SNP	G	G	A	rs57527165	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD53-90	NM_001115116	exon2	c.G211A	p.A71T	GCGCAGGCGACTG	.	8	7	0	0	G|0.893;A|0.107	0	0	0	0	0
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96948949	96948949	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNRNP200-162	NM_014014	exon34	c.C4905A	p.L1635L	GCTGAAGAGCTGC	.	68	22	74	0	.	0	0	0	0	0
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102964457	102964457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL1RL1-517	NM_016232	exon9	c.G1023T	p.M341I	TTTAATGCTAATC	.	73	12	81	0	.	0	0	0	0	0
MRPS9	64965	broad.mit.edu	37	2	105654631	105654631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPS9-90	NM_182640	exon1	c.G81T	p.K27N	CCGGAAGCAAGGC	.	113	23	108	2	.	9	6	3	0	0
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBRAP1-91	NM_004257	exon11	c.C2050A	p.H684N	GGATATGCAGCGC	.	58	30	56	0	.	7	2	5	0	0
SLC5A7	60482	ucsc.edu;bcgsc.ca	37	2	108609540	108609540	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC5A7-93	NM_021815	exon4	c.G405T	p.L135L	TGCACTGATGGGA	.	141	65	181	3	.	0	0	0	0	0
GCC2	9648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109087646	109087646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GCC2-91	NM_181453	exon6	c.G1861T	p.E621X	AGGGAAGAAAGAT	.	150	18	188	1	.	2	2	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	8	8	0	0	A|0.029;G|0.971	0	0	0	0	0
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112740485	112740485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MERTK-1463	NM_006343	exon8	c.G1211T	p.R404I	ACATCAGATGGAT	.	140	69	191	2	.	17	4	13	0	0
WDR33	55339	broad.mit.edu	37	2	128477187	128477187	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR33-90	NM_018383	exon16	c.C2412A	p.G804G	CGGGTGGCCCATA	.	24	3	26	0	.	6	5	1	0	0
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128631584	128631584	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMMECR1L-90	NM_031445	exon3	c.C225A	p.P75P	TGTGATGGGAGAG	.	122	24	144	0	.	4	2	2	0	0
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898834	130898834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC74B-90	NM_207310	exon4	c.C580A	p.Q194K	AATCTTGCTTGTT	.	83	32	103	0	.	99	99	0	0	0
NEB	4703	bcgsc.ca	37	2	152515607	152515607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEB-145	NM_004543	exon47	c.C6047A	p.A2016E	GCCTTTGCCAAAA	.	74	5	111	0	.	0	0	0	0	0
SCN2A	6326	broad.mit.edu;bcgsc.ca	37	2	166166936	166166936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCN2A-142	NM_001040143	exon6	c.G801T	p.L267F	AGGATTGCAGTTG	.	88	6	133	1	.	0	0	0	0	0
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167129186	167129186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCN9A-181	NM_002977	exon17	c.G3041T	p.R1014I	GCTTGTCTTATCT	.	37	6	38	0	.	0	0	0	0	0
DHRS9	10170	bcgsc.ca	37	2	169939886	169939886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHRS9-90	NM_005771	exon6	c.C361A	p.P121T	CTGGCTCCCACTG	.	118	53	164	5	.	0	0	0	0	0
DCAF17	80067	ucsc.edu;bcgsc.ca	37	2	172330394	172330394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCAF17-90	NM_025000	exon10	c.G1000T	p.E334X	ATCCAAGAAATGG	.	97	39	135	5	.	0	0	0	0	0
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	173338941	173338941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA6-227	NM_000210	exon6	c.C934A	p.L312M	GAAGGTCTGGCCT	.	117	62	152	0	.	1	1	0	0	0
WIPF1	7456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	175427307	175427307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WIPF1-92	NM_003387	exon8	c.G1480T	p.G494C	GAGCACCCCTTTC	.	147	84	173	0	.	1	1	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179477034	179477034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTN-636	NM_001267550	exon266	c.G50218T	p.E16740X	AGTCCTCAATTTC	.	89	20	133	0	.	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179482553	179482553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTN-636	NM_001267550	exon253	c.G47525T	p.G15842V	GGTTTTCCAACTC	.	286	59	421	5	.	0	0	0	0	0
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	2	182360586	182360586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA4-230	NM_000885	exon14	c.G1462T	p.E488X	TGTGTTGAAAATG	.	212	9	273	0	.	0	0	0	0	0
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	2	182399023	182399023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA4-230	NM_000885	exon26	c.G2809T	p.E937X	AAGTTTGAAATAA	.	258	19	331	1	.	1	1	0	0	0
ZNF804A	91752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185803043	185803043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF804A-163	NM_194250	exon4	c.G2920T	p.E974X	CATTATGAACTGG	.	103	24	112	1	.	0	0	0	0	0
CALCRL	10203	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	188250272	188250272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CALCRL-523	NM_001271751	exon3	c.G51T	p.M17I	GCTTACCATAAAA	.	95	45	137	2	.	0	0	0	0	0
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189917495	189917495	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL5A2-92	NM_000393	exon40	c.C2695A	p.R899R	TTCCTCGACCACC	.	163	80	202	1	.	3	3	0	0	0
CCDC150	284992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197541324	197541324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080539	exon12	c.G1309T	p.D437Y	GCACAGGATGCTG	.	172	74	211	0	.	0	0	0	0	0
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201397779	201397779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SGOL2-94	NM_001160046	exon2	c.G81T	p.K27N	TTCAAAGACTACT	.	120	49	191	1	.	0	0	0	0	0
CFLAR	8837	ucsc.edu;bcgsc.ca	37	2	201994606	201994606	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFLAR-227	NM_001202516	exon2	c.C18A	p.I6I	AGTCATCCATCAG	.	159	80	160	3	.	6	4	2	0	0
INO80D	54891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206869265	206869265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	INO80D-91	NM_017759	exon11	c.C2911A	p.Q971K	GGAGTTGCTGCTT	.	99	10	131	0	.	0	0	0	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174885	207174885	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZDBF2-3	NM_020923	exon5	c.5633delG	p.W1878fs	TTACCTGGGCTGA	.	76	10	89	0	.	0	0	0	0	0
KLF7	8609	bcgsc.ca	37	2	207988945	207988945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KLF7-91	NM_003709	exon2	c.G286T	p.D96Y	AGATGTCCACTGC	.	165	53	172	6	.	2	1	1	0	0
TTLL4	9654	broad.mit.edu	37	2	219602615	219602615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTLL4-93	NM_014640	exon3	c.G216T	p.L72F	CCTCTTGGGCGTC	.	153	4	195	0	.	2	2	0	0	0
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223773830	223773830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSL3-228	NM_203372	exon3	c.G340T	p.E114X	AATGAGGAAGATG	.	45	11	66	0	.	13	13	0	0	0
DAW1	164781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228770995	228770995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_178821	exon9	c.G799A	p.A267T	AGCAGTGCCTCAT	.	36	5	65	0	.	0	0	0	0	0
SP140	11262	ucsc.edu;bcgsc.ca	37	2	231155258	231155258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SP140-90	NM_007237	exon19	c.C1804A	p.H602N	ATTTTACATAAGA	.	110	20	162	3	.	1	1	0	0	0
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233431658	233431658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EIF4E2-90	NM_004846	exon5	c.G495T	p.E165D	GGAGGAGATCTGT	.	65	36	82	0	.	51	22	29	0	0
DGKD	8527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234344974	234344974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGKD-676	NM_152879	exon7	c.C706A	p.H236N	ATGCCCCACCAGT	.	126	47	123	1	.	0	0	0	0	0
UGT1A3	54659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234638397	234638397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UGT1A3-24	NM_019093	exon1	c.C625A	p.Q209K	TTCATGCAAAGGG	.	215	50	284	0	.	0	0	0	0	0
COL6A3	1293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238275811	238275811	+	Silent	SNP	G	G	A	rs140516220		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL6A3-526	NM_004369	exon11	c.C5019T	p.G1673G	GGAGTCGCCATCT	.	109	19	145	1	G|1.000;A|0.000	1	1	0	0	0
UBOX5	22888	broad.mit.edu;bcgsc.ca	37	20	3090889	3090889	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBOX5-227	NM_014948	exon5	c.G1489T	p.E497X	CCGGCTCCTTTTT	.	106	40	84	2	.	21	14	7	0	0
ADAM33	80332	broad.mit.edu;bcgsc.ca	37	20	3654768	3654768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAM33-291	NM_025220	exon8	c.C681A	p.H227Q	GTTTCGGTGCCGA	.	160	7	175	1	.	0	0	0	0	0
SEC23B	10483	ucsc.edu;bcgsc.ca	37	20	18491542	18491542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEC23B-91	NM_006363	exon2	c.G63T	p.W21C	TAGTTGGAACGTG	.	213	46	301	5	.	15	11	3	1	0
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23584241	23584241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CST9-91	NM_001008693	exon2	c.G386T	p.S129I	GGAAAGCTGATGC	.	170	34	205	1	.	0	0	0	0	0
NECAB3	63941	broad.mit.edu	37	20	32248098	32248098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NECAB3-91	NM_031232	exon6	c.C491A	p.S164X	GTATCTGACGCCC	.	40	8	51	1	.	38	28	10	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33328359	33328359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCOA6-292	NM_014071	exon11	c.G5701T	p.A1901S	GTCCTGCTGAGGC	.	38	22	41	0	.	22	10	12	0	0
DHX35	60625	mdanderson.org	37	20	37630412	37630412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHX35-226	NM_021931	exon9	c.C682A	p.P228T	AGTGATCCAGCAA	.	36	12	37	0	.	6	5	1	0	0
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39794149	39794149	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLCG1-911	NM_182811	exon15	c.C1569A	p.T523T	GGAGACCAGCAGT	.	115	50	165	1	.	8	1	7	0	0
SDC4	6385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43956014	43956014	+	Missense_Mutation	SNP	A	A	G	rs149518436		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SDC4-90	NM_002999	exon5	c.T487C	p.F163L	TCAGGAAGACGGC	.	80	42	83	1	A|1.000;G|0.000	71	26	45	0	0
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54961553	54961553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AURKA-1601	NM_198437	exon3	c.G79A	p.V27M	GAGTCACGAGAAC	.	106	54	90	0	.	8	2	6	0	0
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62616311	62616311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRPF6-70	NM_012469	exon3	c.G292T	p.D98Y	AAAGATGATGAGG	.	55	10	78	0	.	25	17	8	0	0
NPBWR2	2832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62737957	62737957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NPBWR2-153	NM_005286	exon1	c.G228T	p.M76I	CGTCTTCATCTTG	.	67	10	75	1	.	0	0	0	0	0
SAMSN1	64092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15893519	15893519	+	Missense_Mutation	SNP	G	G	T	rs192978628	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SAMSN1-94	NM_001256370	exon3	c.C285A	p.F95L	ACGATCGAAATTC	.	112	27	147	2	G|0.999;A|0.000	0	0	0	0	0
MAP3K7CL	56911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	30464777	30464777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_020152	exon6	c.C245G	p.S82C	TATGCTCTGCAAC	.	73	14	79	1	.	1	1	0	0	0
SCAF4	57466	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33043911	33043911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCAF4-90	NM_020706	exon20	c.A3245T	p.E1082V	GTCACCTCAGGCT	.	38	17	58	1	.	35	12	23	0	0
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34011381	34011381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNJ1-232	NM_203446	exon31	c.C3869A	p.S1290Y	AAAGAAGACTGCG	.	37	7	49	0	.	2	2	0	0	0
TRPM2	7226	broad.mit.edu;bcgsc.ca	37	21	45838383	45838383	+	Nonsense_Mutation	SNP	C	C	T	rs143493112	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM2-92	NM_003307	exon22	c.C3406T	p.R1136X	CAGAACCGACAGT	.	218	7	295	1	C|0.998;T|0.002	1	1	0	0	0
KRTAP10-3	386682	bcgsc.ca	37	21	45978319	45978319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP10-3-91	NM_198696	exon1	c.C280G	p.P94A	GGCAGGGGGAGGA	.	86	71	91	5	.	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	31	25	16	5	C|1.000;|0.000	0	0	0	0	0
POTEH	23784	broad.mit.edu	37	22	16266963	16266963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POTEH-1	NM_001136213	exon9	c.C1486A	p.Q496K	GAAATTGCTGGCT	.	1275	19	1151	2	.	0	0	0	0	0
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19511638	19511638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLDN5-492	NM_001130861	exon1	c.G396T	p.W132C	CCCCTTCCAGGTG	.	67	56	56	0	.	2	2	0	0	0
DGCR8	54487	broad.mit.edu;bcgsc.ca	37	22	20080378	20080378	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGCR8-90	NM_022720	exon8	c.G1653T	p.V551V	TGGTGTGACTTAC	.	84	5	113	1	.	13	12	1	0	0
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140341	21140341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SERPIND1-414	NM_000185	exon4	c.C1213A	p.L405I	TACAATCTAGTGG	.	112	60	123	2	.	0	0	0	0	0
IGLL1	3543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	23915564	23915564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGLL1-90	NM_020070	exon3	c.C531A	p.S177R	CAGGTAGCTGCTG	.	139	8	126	0	.	12	12	0	0	0
MMP11	4320	broad.mit.edu;bcgsc.ca	37	22	24121481	24121481	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MMP11-291	NM_005940	exon2	c.C216A	p.A72A	GCCTGCCAGCAGC	.	90	25	48	1	.	1	1	0	0	0
UPB1	51733	hgsc.bcm.edu;broad.mit.edu	37	22	24911294	24911294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UPB1-92	NM_016327	exon6	c.G747T	p.G249G	CAACGGGGCTGAG	.	97	5	152	0	.	0	0	0	0	0
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423258	26423258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYO18B-142	NM_032608	exon43	c.G7318T	p.D2440Y	AAAGTGGACTTCG	.	154	73	203	1	.	0	0	0	0	0
DEPDC5	9681	ucsc.edu;bcgsc.ca	37	22	32266663	32266663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DEPDC5-519	NM_001242896	exon34	c.C3418A	p.Q1140K	AACAGCCAGACCT	.	129	54	130	2	.	0	0	0	0	0
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37397950	37397950	+	Silent	SNP	G	G	T	rs200772582	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001163857	exon3	c.C417A	p.G139G	GATGCTGCCCTTC	.	112	25	171	0	G|0.999;A|0.001	0	0	0	0	0
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39811035	39811035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAB1-522	NM_153497	exon2	c.G58T	p.D20Y	ACAGATGACCTGC	.	69	11	86	0	.	6	6	0	0	0
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40657846	40657846	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNRC6B-22	NM_001024843	exon7	c.G234T	p.V78V	CGAAGTGACGAAA	.	161	76	251	3	.	0	0	0	0	0
TNRC6B	23112	bcgsc.ca;mdanderson.org	37	22	40666127	40666127	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNRC6B-22	NM_001162501	exon6	c.C2808A	p.V936V	TATAGTCTGGAGC	.	33	15	31	1	.	0	0	0	0	0
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50552817	50552817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MOV10L1-93	NM_018995	exon7	c.G892T	p.G298X	AATAAAGGAGACA	.	36	21	65	0	.	0	0	0	0	0
IRAK2	3656	hgsc.bcm.edu;bcgsc.ca	37	3	10255048	10255048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IRAK2-574	NM_001570	exon5	c.G686T	p.R229M	GGCACAGGCACGG	.	67	4	92	0	.	1	1	0	0	0
GADL1	339896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30875737	30875737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GADL1-90	NM_207359	exon10	c.C940A	p.H314N	TGCGGTGCTTCCT	.	115	13	153	2	.	0	0	0	0	0
TTC21A	199223	bcgsc.ca	37	3	39156157	39156157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC21A-91	NM_145755	exon6	c.C640A	p.L214M	AGCTTCCTGCCAG	.	126	33	163	3	.	2	2	0	0	0
LARS2	23395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45589017	45589017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LARS2-92	NM_015340	exon22	c.G2707T	p.D903Y	GTGCAAGATTGAC	.	94	18	84	1	.	15	12	3	0	0
SETD2	29072	broad.mit.edu;bcgsc.ca	37	3	47161746	47161746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SETD2-1273	NM_014159	exon3	c.G4380T	p.W1460C	TTCCTTCCATCGC	.	60	24	90	2	.	5	3	2	0	0
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47454406	47454406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTPN23-227	NM_015466	exon25	c.C4642A	p.L1548I	CCCCCCCTTTCCT	.	30	16	27	0	.	1	0	1	0	0
COL7A1	1294	broad.mit.edu;bcgsc.ca	37	3	48632594	48632594	+	Translation_Start_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL7A1-160	.	.	.	.	GTCATCCTAGGCA	.	125	21	65	1	.	0	0	0	0	0
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49147976	49147976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP19-663	NM_001199161	exon25	c.C3760A	p.L1254I	CATATAGATCGTA	.	100	18	127	1	.	27	24	3	0	0
MST1	4485	bcgsc.ca	37	3	49722288	49722288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MST1-278	NM_020998	exon15	c.G1652T	p.W551L	CCCAACCATACCT	.	270	27	258	3	.	23	23	0	0	0
SLC38A3	10991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50256024	50256024	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC38A3-67	NM_006841	exon13	c.1037-1G>T	.	GCCACAGACGGGG	.	81	16	76	1	.	0	0	0	0	0
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52643651	52643651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PBRM1-575	NM_018313	exon17	c.G2245T	p.A749S	CAAGAGCATCTTT	.	103	14	109	1	.	3	3	0	0	0
ITIH3	3699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52841088	52841088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITIH3-93	NM_002217	exon19	c.G2228T	p.S743I	CTTTCAGCTGGCT	.	134	24	153	1	.	3	2	1	0	0
FAM208A	23272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56702515	56702515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001112736	exon6	c.G807T	p.L269F	GGGGTCCAAAGCA	.	97	52	123	1	.	2	0	2	0	0
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57616535	57616535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152678	exon17	c.G1424T	p.R475I	AACTGTCTTAATT	.	29	6	26	0	.	0	0	0	0	0
FLNB	2317	broad.mit.edu	37	3	58145372	58145372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FLNB-593	NM_001164317	exon43	c.C7073A	p.S2358Y	GCCCCTCTGGAGC	.	36	8	52	2	.	100	78	22	0	0
EPHA6	285220	ucsc.edu;bcgsc.ca	37	3	96706665	96706665	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA6-1561	NM_001080448	exon3	c.C942A	p.T314T	TGATACCATTCCA	.	104	50	181	2	.	0	0	0	0	0
EPHA6	285220	broad.mit.edu;bcgsc.ca	37	3	97194260	97194260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA6-1561	NM_001080448	exon8	c.C1959A	p.F653L	CGGATTCACTCTC	.	56	21	75	2	.	0	0	0	0	0
ATG3	64422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112257000	112257000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATG3-93	NM_022488	exon8	c.C503A	p.T168K	TCATCTGTTTCCA	.	119	21	183	2	.	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	5	5	0	0	C|0.826;G|0.174	0	0	0	0	0
POLQ	10721	ucsc.edu;bcgsc.ca	37	3	121178920	121178920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POLQ-664	NM_199420	exon25	c.G7129T	p.D2377Y	TCAGATCATCCCC	.	120	25	212	3	.	3	3	0	0	0
CASR	846	broad.mit.edu	37	3	121976121	121976121	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CASR-97	NM_001178065	exon3	c.G379T	p.E127X	CTTGATGAGTTCT	.	78	15	91	2	.	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	37	37	0	0	C|0.900;T|0.100	1	0	1	0	0
BFSP2	8419	broad.mit.edu	37	3	133169164	133169164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BFSP2-90	NM_003571	exon4	c.C747A	p.H249Q	GCTGCACAAACAG	.	111	3	109	0	.	0	0	0	0	0
PIK3CB	5291	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138478043	138478043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PIK3CB-1311	NM_006219	exon1	c.G143T	p.R48L	GCTTCCCGAGGTA	.	170	22	239	1	.	0	0	0	0	0
NMNAT3	349565	ucsc.edu;bcgsc.ca	37	3	139292460	139292460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NMNAT3-90	NM_178177	exon4	c.C245A	p.A82E	AAGAGTGCCTTGC	.	115	51	159	2	.	7	0	7	0	0
PAQR9	344838	ucsc.edu;bcgsc.ca	37	3	142681441	142681441	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAQR9-68	NM_198504	exon1	c.C738A	p.V246V	GACGAAGACGAAG	.	267	43	228	2	.	0	0	0	0	0
ZIC1	7545	hgsc.bcm.edu	37	3	147127937	147127937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZIC1-91	NM_003412	exon1	c.G38T	p.G13V	CGATCGGCGTGAC	.	28	6	4	0	.	0	0	0	0	0
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148575243	148575243	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CPB1-92	NM_001871	exon10	c.982-1G>T	.	TTTGCAGAATGCC	.	83	7	93	0	.	3	3	0	0	0
TSC22D2	9819	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150128968	150128968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TSC22D2-91	NM_014779	exon1	c.G1831T	p.E611X	ATTGCTGAAAATA	.	98	35	122	1	.	8	1	7	0	0
PTX3	5806	broad.mit.edu;ucsc.edu	37	3	157160724	157160724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTX3-514	NM_002852	exon3	c.G1102T	p.V368F	TGGGGAGTCACAG	.	43	4	73	1	.	1	1	0	0	0
IQCJ-SCHIP1	100505385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	159605617	159605617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001197113	exon8	c.G1345T	p.A449S	GCCCTTGCCATGG	.	153	16	187	2	.	2	2	0	0	0
KPNA4	3840	broad.mit.edu	37	3	160243877	160243877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KPNA4-226	NM_002268	exon9	c.G575T	p.R192I	TAATCTCTACACT	.	187	6	266	2	.	9	8	1	0	0
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160804280	160804280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	B3GALNT1-91	NM_001038628	exon8	c.C263A	p.P88H	TCTGAAGGGTGGG	.	46	22	36	0	.	0	0	0	0	0
ZBBX	79740	ucsc.edu;bcgsc.ca	37	3	167033573	167033573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZBBX-92	NM_024687	exon15	c.C1239A	p.Y413X	AACTTTGTAAGGC	.	142	19	234	2	.	0	0	0	0	0
LRRC34	151827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169514567	169514567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC34-90	NM_001172779	exon8	c.C874A	p.L292M	TGTTCAGATACAG	.	105	19	161	2	.	0	0	0	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198352	170198352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC7A14-94	NM_020949	exon7	c.C1719A	p.F573L	GAGGATGAAGAGC	.	63	10	87	2	.	0	0	0	0	0
TNIK	23043	broad.mit.edu	37	3	170928941	170928941	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNIK-550	NM_001161562	exon4	c.C270A	p.I90I	CTTTTTGATAAAA	.	51	6	56	2	.	3	3	0	0	0
ECT2	1894	broad.mit.edu	37	3	172520657	172520657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ECT2-724	NM_001258315	exon20	c.C1993G	p.L665V	GCTAATCTTTTAT	.	35	6	43	2	.	0	0	0	0	0
NAALADL2	254827	bcgsc.ca	37	3	175189492	175189492	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NAALADL2-47	NM_207015	exon9	c.G1599T	p.G533G	AAGGGGGAACTCT	.	137	56	265	5	.	0	0	0	0	0
USP13	8975	ucsc.edu	37	3	179483602	179483602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP13-659	NM_003940	exon19	c.G2379T	p.K793N	GGCCAAGCCCGAA	.	76	11	123	2	.	7	5	2	0	0
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180324359	180324359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC14-91	NM_001042601	exon9	c.C1140A	p.Y380X	AAAATACCTCTGC	.	91	9	100	0	.	3	3	0	0	0
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184910464	184910464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EHHADH-93	NM_001966	exon7	c.G1722T	p.K574N	ACCTGTCTTCTGG	.	89	30	93	0	.	3	3	0	0	0
CEP19	84984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196434499	196434499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CEP19-69	NM_032898	exon3	c.G427T	p.D143Y	CAATGTCATAAAC	.	47	17	83	0	.	5	3	2	0	0
GAK	2580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	882712	882712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GAK-568	NM_005255	exon11	c.C1128A	p.D376E	CAGAATGTCCAGG	.	116	35	86	1	.	30	23	7	0	0
TMEM175	84286	broad.mit.edu;ucsc.edu	37	4	947039	947039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM175-90	NM_032326	exon8	c.C524A	p.S175Y	AGCGCTCTGCCCA	.	105	16	84	1	.	98	92	6	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	113	15	8	0	C|0.960;G|0.040	55	18	37	0	0
TACC3	10460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1742615	1742615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TACC3-91	NM_006342	exon13	c.G2125T	p.D709Y	GAAAAAGACCAAC	.	126	20	88	1	.	90	82	8	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	53	20	9	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	39	13	5	0	.	0	0	0	0	0
HTRA3	94031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8293280	8293280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HTRA3-91	NM_053044	exon4	c.G892T	p.A298S	ACGGATGCCATCA	.	133	17	110	1	.	0	0	0	0	0
DEFB131	644414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DEFB131-68	NM_001040448	exon2	c.C74A	p.S25Y	TCATTTCTAATGA	.	224	40	252	0	.	0	0	0	0	0
FAM184B	27146	broad.mit.edu	37	4	17706724	17706724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM184B-23	NM_015688	exon5	c.G1276T	p.D426Y	GCTGGTCTTTGAG	.	150	6	120	0	.	0	0	0	0	0
ZCCHC4	29063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25351214	25351214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZCCHC4-70	NM_024936	exon7	c.C860A	p.A287D	CTCTGGCTATTAC	.	156	57	154	1	.	1	1	0	0	0
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37903767	37903767	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D1-91	NM_015173	exon2	c.C51A	p.V17V	CGAGGTCTCGGTG	.	177	47	111	0	.	0	0	0	0	0
WDR19	57728	bcgsc.ca	37	4	39188188	39188188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR19-67	NM_025132	exon3	c.G128T	p.R43L	TTGATCGCCATGG	.	181	57	121	3	.	1	1	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	9	8	0	0	G|0.794;C|0.206	4	0	4	0	0
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47746504	47746504	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CORIN-91	NM_006587	exon5	c.C714A	p.L238L	GCATCTGAGGAAA	.	117	12	85	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	9	9	0	0	G|0.025;C|0.975	0	0	0	0	0
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54011642	54011642	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCFD2-93	NM_152540	exon5	c.C1419A	p.I473I	GAGAAGGATCAGC	.	127	22	106	1	.	23	21	2	0	0
SRP72	6731	ucsc.edu;bcgsc.ca	37	4	57352563	57352563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SRP72-116	NM_006947	exon11	c.G1159T	p.G387C	TCTCAAGGTATTA	.	216	46	167	3	.	0	0	0	0	0
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72363343	72363343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC4A4-95	NM_001098484	exon16	c.C2100A	p.F700L	CCTCTTCTTGGGA	.	131	11	92	0	.	0	0	0	0	0
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	73941997	73941997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD17-234	NM_032217	exon34	c.G7763C	p.G2588A	CAGGGTCCAGTCC	.	200	11	142	0	.	0	0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	74005860	74005860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD17-234	NM_032217	exon15	c.G2473T	p.A825S	CTATGGCTTCTTT	.	112	5	108	0	.	1	1	0	0	0
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74735403	74735403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CXCL1-204	NM_001511	exon2	c.G118T	p.E40X	GCCACTGAACTGC	.	221	71	164	0	.	0	0	0	0	0
PARM1	25849	broad.mit.edu;bcgsc.ca	37	4	75938041	75938041	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARM1-1	NM_015393	exon2	c.C450A	p.S150S	CATCTCCCCTCAA	.	212	12	171	1	.	3	3	0	0	0
CDKL2	8999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76522169	76522169	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDKL2-454	NM_003948	exon9	c.C1272A	p.P424P	AATGCTGGGAGCA	.	222	58	183	2	.	0	0	0	0	0
COQ2	27235	broad.mit.edu	37	4	84205941	84205941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COQ2-92	NM_015697	exon1	c.G127A	p.A43T	GACGAGCTCGGAT	.	9	5	10	0	.	0	0	0	0	0
DAPP1	27071	bcgsc.ca	37	4	100738081	100738081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DAPP1-93	NM_014395	exon1	c.C11A	p.A4E	GCAGAGCAGAACT	.	128	16	103	2	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104082566	104082566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CENPE-277	NM_001813	exon19	c.G1891T	p.E631X	CAGTTTCAGCATC	.	138	15	125	0	.	2	2	0	0	0
ARHGEF38	54848	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	106534599	106534599	+	Nonsense_Mutation	SNP	C	C	A	rs61751053	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF38-292	NM_001242729	exon3	c.C443A	p.S148X	AGATATCAGCCAA	.	98	15	111	0	C|0.995;T|0.005	0	0	0	0	0
CYP2U1	113612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	108866353	108866353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2U1-90	NM_183075	exon2	c.C718A	p.R240S	GGCCAGCGCTTTG	.	136	23	102	1	.	1	1	0	0	0
HADH	3033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	108944697	108944697	+	Missense_Mutation	SNP	G	G	T	rs144699575	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HADH-91	NM_005327	exon5	c.G614T	p.G205V	CCCTAGGAAAGCA	.	131	17	108	0	G|0.999;C|0.001	86	74	12	0	0
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	111441505	111441505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENPEP-157	NM_001977	exon10	c.G1710T	p.Q570H	TTCTCAGCCCCCT	.	165	14	141	0	.	3	3	0	0	0
ANK2	287	broad.mit.edu;bcgsc.ca	37	4	114257869	114257869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANK2-583	NM_001148	exon31	c.C3728A	p.S1243X	AAGCTTCAAGTGA	.	193	8	132	0	.	2	2	0	0	0
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120182880	120182880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP53-660	NM_019050	exon11	c.G833T	p.R278I	TTTATAGAGTTAC	.	97	19	92	0	.	0	0	0	0	0
ANXA5	308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122607510	122607510	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANXA5-91	NM_001154	exon3	c.G27T	p.V9V	GTCAGTCACAGTG	.	68	9	65	0	.	716	629	87	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329878	126329878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5849T	p.S1950I	CATACAGCACATC	.	105	22	84	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126329907	126329907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5878T	p.G1960X	CCTGTGGGATCTA	.	86	33	76	0	.	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126336106	126336106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon5	c.G5988T	p.K1996N	TGACAAGAATGGT	.	182	15	155	1	.	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126373173	126373173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon9	c.C11002A	p.L3668M	TGTGATCTGAATT	.	148	16	106	1	.	1	1	0	0	0
GYPE	2996	ucsc.edu;bcgsc.ca	37	4	144797985	144797985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198682	exon3	c.G160T	p.A54S	CCATCGCCCACCA	.	352	67	340	3	.	0	0	0	0	0
HHIP	64399	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	145628246	145628246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HHIP-283	NM_022475	exon6	c.C991A	p.P331T	AAAAATCCACACC	.	72	27	64	2	.	0	0	0	0	0
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147830262	147830262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC29-90	NM_031956	exon5	c.C316A	p.L106M	TCTGCAGCCAGAA	.	53	15	55	0	.	0	0	0	0	0
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	183696223	183696223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080477	exon23	c.G5221T	p.E1741X	CCTGGCGAGAACG	.	178	71	204	2	.	0	0	0	0	0
PDLIM3	27295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186427748	186427748	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDLIM3-92	NM_014476	exon6	c.C721A	p.R241R	CATTCCGATTGTC	.	61	13	47	0	.	7	7	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187534440	187534440	+	Missense_Mutation	SNP	G	G	T	rs200812915	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon13	c.C9286A	p.L3096I	TGACGAGAAGATG	.	109	37	97	0	G|0.999;C|0.000	10	5	5	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629193	187629193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon2	c.G1789T	p.D597Y	GTTCATCTGCATC	.	43	27	42	0	.	0	0	0	0	0
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	480044	480044	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC9A3-90	NM_004174	exon10	c.C1554A	p.V518V	CATGAGGACCCTG	.	124	15	80	0	.	25	20	5	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	9	0	0	C|0.454;G|0.546	2	0	2	0	0
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10258587	10258587	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCT5-92	NM_012073	exon6	c.C813A	p.V271V	CTCTGTCGAAGAT	.	244	34	206	0	.	160	125	35	0	0
CDH18	1016	ucsc.edu;bcgsc.ca	37	5	19721543	19721543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH18-159	NM_001167667	exon5	c.G556T	p.A186S	CATCTGCATCAGT	.	307	39	287	2	.	1	1	0	0	0
PDZD2	23037	ucsc.edu;bcgsc.ca	37	5	32088697	32088697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDZD2-563	NM_178140	exon19	c.G5143T	p.A1715S	AAAGTAGCCAGGC	.	187	52	191	2	.	1	1	0	0	0
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38966809	38966809	+	Silent	SNP	C	C	A	rs149142099	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RICTOR-849	NM_152756	exon15	c.G1233T	p.V411V	TGTTATCACTTCA	.	170	17	102	0	C|1.000;T|0.000	1	0	1	0	0
SKIV2L2	23517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54619984	54619984	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SKIV2L2-92	NM_015360	exon3	c.C297A	p.V99V	CAGAGTCAAGGTA	.	167	49	168	1	.	8	6	2	0	0
KIF2A	3796	bcgsc.ca	37	5	61673487	61673487	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIF2A-228	NM_001098511	exon19	c.1912-1G>T	.	TTTTAAGGAAGAA	.	191	17	140	2	.	0	0	0	0	0
LOC647859	0	bcgsc.ca	37	5	70370106	70370106	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	CAATTTGCTGTTT	.	1763	290	1350	11	.	0	0	0	0	0
ARHGEF28	64283	ucsc.edu	37	5	73142221	73142221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080479	exon12	c.C1556A	p.S519Y	TGGACTCTTTTGA	.	144	15	135	3	.	0	0	0	0	0
CRHBP	1393	ucsc.edu;bcgsc.ca	37	5	76264679	76264679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRHBP-90	NM_001882	exon7	c.G938T	p.S313I	GAAACAGTATCGG	.	197	54	197	3	.	1	1	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	23	11	10	0	G|0.834;C|0.166	1	1	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89923239	89923239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR98-103	NM_032119	exon7	c.G884T	p.G295V	TGATTGGATCTGA	.	168	23	173	0	.	0	0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106472	90106472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR98-103	NM_032119	exon74	c.G15395T	p.G5132V	TGGCAGGAATGGA	.	86	4	72	0	.	0	0	0	0	0
SPATA9	83890	ucsc.edu;bcgsc.ca	37	5	95018528	95018528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPATA9-90	NM_031952	exon1	c.G31T	p.G11W	CCTGCCCACATAT	.	191	34	136	2	.	0	0	0	0	0
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	5	115837909	115837909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEMA6A-92	NM_020796	exon3	c.C215A	p.A72D	TACCTAGCAGCAA	.	228	11	174	1	.	0	0	0	0	0
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132087879	132087879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCNI2-68	NM_001039780	exon5	c.G996T	p.K332N	GCTAAAGAAAGCA	.	157	18	111	0	.	0	0	0	0	0
SEPT8	23176	hgsc.bcm.edu;bcgsc.ca	37	5	132097158	132097158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEPT8-70	NM_015146	exon7	c.G954T	p.Q318H	GAAGGGCTGGCTG	.	60	6	48	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	9	9	0	0	G|0.980;C|0.020	0	0	0	0	0
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132272803	132272803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFF4-229	NM_014423	exon2	c.G79A	p.A27T	GGAAGGCGTCTTC	.	150	10	129	0	.	3	3	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138728147	138728147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001161546	exon1	c.G2624T	p.G875V	GCGGCCCCGGGCT	.	17	5	2	0	.	0	0	0	0	0
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDHA6-92	NM_031849	exon1	c.G217T	p.D73Y	CGCGAGGACCTTC	.	162	12	114	0	.	1	1	0	0	0
PCDHB13	56123	ucsc.edu	37	5	140594815	140594815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDHB13-93	NM_018933	exon1	c.C1120A	p.L374I	TCAGATCTTGATT	.	241	51	187	5	.	8	4	4	0	0
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140763290	140763290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_032087	exon1	c.G824T	p.G275V	TCAATGGGGAAGT	.	182	44	127	2	.	0	0	0	0	0
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142264925	142264925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP26-660	NM_015071	exon5	c.G447T	p.L149F	ACACTTGAATTTG	.	296	75	239	0	.	0	0	0	0	0
ITK	3702	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156671402	156671402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITK-1427	NM_005546	exon13	c.G1363T	p.A455S	CTTTTTGCTGCAG	.	123	43	149	1	.	0	0	0	0	0
CYFIP2	26999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156753261	156753261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYFIP2-22	NM_001037332	exon18	c.G2065T	p.E689X	TACGATGAGATAG	.	129	21	153	1	.	4	4	0	0	0
IL12B	3593	bcgsc.ca	37	5	158750252	158750252	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL12B-90	NM_002187	exon3	c.C174A	p.I58I	CCAGGTGATACCA	.	148	43	142	3	.	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170668124	170668124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP17-524	NM_022897	exon23	c.C2615A	p.S872X	TGCTGTCAGTGTC	.	110	29	84	0	.	6	6	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	9	9	0	0	G|0.585;C|0.415	0	0	0	0	0
COL23A1	91522	broad.mit.edu;ucsc.edu	37	5	177690260	177690260	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL23A1-91	NM_173465	exon9	c.C588A	p.G196G	AGGAGGGCCCCGG	.	78	13	48	1	.	0	0	0	0	0
BTNL3	10917	broad.mit.edu	37	5	180432368	180432368	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_197975	exon8	c.G897T	p.P299P	TCACCCGAAGCTC	.	124	3	130	0	.	0	0	0	0	0
BTNL9	153579	broad.mit.edu;bcgsc.ca	37	5	180477228	180477228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BTNL9-91	NM_152547	exon4	c.G595T	p.E199X	GAGTTTGAAGCCA	.	170	10	180	2	.	3	3	0	0	0
OR2V2	285659	broad.mit.edu;bcgsc.ca	37	5	180582781	180582781	+	Missense_Mutation	SNP	C	C	T	rs200222451		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2V2-69	NM_206880	exon1	c.C839T	p.T280M	TCTACACGGTCCT	.	239	12	257	1	C|0.999;T|0.000	0	0	0	0	0
NQO2	4835	broad.mit.edu	37	6	3012810	3012810	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NQO2-91	NM_000904	exon4	c.G205T	p.G69X	AATTATGGAGTGG	.	220	5	193	0	.	163	162	1	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121200	12121200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon4	c.G1172T	p.C391F	AAATGTGCAATCT	.	82	19	77	0	.	0	0	0	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12163624	12163624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon9	c.C7087A	p.Q2363K	CAGAAGCAGCAAA	.	93	20	79	0	.	10	7	3	0	0
NRSN1	140767	ucsc.edu	37	6	24145937	24145937	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NRSN1-90	NM_080723	exon4	c.G351T	p.L117L	CAAGCTGGCAGGA	.	129	14	128	3	.	0	0	0	0	0
OR2W1	26692	broad.mit.edu	37	6	29012545	29012545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2W1-93	NM_030903	exon1	c.G408T	p.M136I	TGGGTTCATGACT	.	68	4	65	1	.	0	0	0	0	0
OR2H1	26716	ucsc.edu;bcgsc.ca	37	6	29429993	29429993	+	Missense_Mutation	SNP	G	G	T	rs139057187	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2H1-90	NM_030883	exon3	c.G447T	p.M149I	GGTTATGAGTCTG	.	172	43	130	2	G|0.999;A|0.001	0	0	0	0	0
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	6	29591685	29591685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABBR1-521	NM_001470	exon7	c.G774T	p.R258S	CCACATCCTAGCA	.	214	7	172	0	.	4	4	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	17	13	0	0	C|0.862;A|0.138	6	6	0	0	0
ABCF1	23	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30552279	30552279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCF1-92	NM_001025091	exon14	c.G1327T	p.E443X	GACCCTGAAATGC	.	79	9	79	0	.	36	36	0	0	0
EHMT2	10919	broad.mit.edu;ucsc.edu	37	6	31856281	31856281	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EHMT2-91	NM_006709	exon12	c.G1368T	p.L456L	GCCTGACAGCTGT	.	119	14	68	1	.	0	0	0	0	0
CFB	629	broad.mit.edu	37	6	31917321	31917321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFB-91	NM_001710	exon10	c.C1395A	p.F465L	TGTTTTCTACCAA	.	75	5	50	2	.	0	0	0	0	0
PSMB9	5698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32825820	32825820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PSMB9-90	NM_002800	exon4	c.C299A	p.A100E	CTGCTGCAAATGT	.	193	50	132	1	.	47	36	11	0	0
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33630346	33630346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITPR3-1085	NM_002224	exon8	c.C753A	p.F251L	GAAGTTCCTGACG	.	107	50	73	1	.	1	1	0	0	0
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38561778	38561778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BTBD9-226	NM_052893	exon4	c.G511T	p.E171X	GGACTTCCTGAGC	.	187	34	134	0	.	1	1	0	0	0
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38800136	38800136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH8-615	NM_001206927	exon31	c.G4227T	p.K1409N	GCCAAAGTTTAAA	.	222	8	173	0	.	0	0	0	0	0
KCNK17	89822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39271826	39271826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNK17-227	NM_001135111	exon4	c.C595A	p.L199I	AGAAGAGCAGCGG	.	153	42	122	2	.	0	0	0	0	0
PRPH2	5961	broad.mit.edu;ucsc.edu	37	6	42689604	42689604	+	Missense_Mutation	SNP	C	C	A	rs61755787	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRPH2-94	NM_000322	exon1	c.G469T	p.D157Y	GCATGTCGATGGT	.	204	21	148	2	.	0	0	0	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNPY3-69	NM_006586	exon1	c.50_52del	p.17_18del	TTCCCTTGCTGCT	.	106	8	14	0	.	0	0	0	0	0
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42957364	42957364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP2R5D-1082	NM_180976	exon2	c.G43T	p.A15S	AAGGTTGCCAAAT	.	81	12	57	0	.	10	8	2	0	0
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607338	46607338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP39A1-91	NM_016593	exon3	c.G381T	p.M127I	AGTCCCCATTTTC	.	121	35	109	0	.	0	0	0	0	0
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47754293	47754293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OPN5-69	NM_181744	exon2	c.C173A	p.S58Y	ACATGTCTTCTAG	.	119	15	98	0	.	0	0	0	0	0
GLYATL3	389396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	49485158	49485158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001010904	exon4	c.C202A	p.L68I	GATAACCTTGATC	.	149	12	118	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51612798	51612798	+	Missense_Mutation	SNP	C	C	A	rs141507554		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PKHD1-603	NM_170724	exon58	c.G9616T	p.V3206L	TGGCCACAATGAC	.	178	22	127	0	C|1.000;A|0.000	0	0	0	0	0
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53139932	53139932	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELOVL5-90	NM_001242828	exon6	c.T533A	p.L178Q	ATGTTCAGCATCG	.	234	32	187	2	.	92	82	10	0	0
TINAG	27283	bcgsc.ca;mdanderson.org	37	6	54172881	54172881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TINAG-93	.	.	.	.	GATGTTCGTTTCA	.	101	24	78	0	.	0	0	0	0	0
FAM83B	222584	broad.mit.edu;bcgsc.ca	37	6	54805222	54805222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM83B-96	NM_001010872	exon5	c.G1453T	p.E485X	ACCCTTGAACATA	.	57	13	60	1	.	0	0	0	0	0
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56033011	56033011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL21A1-24	NM_030820	exon6	c.G1111T	p.E371X	TGTTTTCAATTTG	.	78	12	58	0	.	0	0	0	0	0
RNU6-71	100873774	broad.mit.edu;bcgsc.ca	37	6	56569107	56569107	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	CTAAAAGAGAAAT	.	163	12	109	0	.	0	0	0	0	0
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63991038	63991038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LGSN-227	NM_016571	exon4	c.G418T	p.A140S	ATGTGGCTCTTAT	.	126	42	111	0	.	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65301109	65301109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EYS-660	NM_001142800	exon26	c.G4651T	p.E1551X	TTAATTCTCTTAA	.	117	19	85	0	.	0	0	0	0	0
COL19A1	1310	bcgsc.ca	37	6	70916977	70916977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL19A1-156	NM_001858	exon51	c.G3428T	p.X1143L	GGAATTGAACACA	.	50	13	39	1	.	0	0	0	0	0
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74161347	74161347	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MB21D1-90	NM_138441	exon1	c.G558T	p.V186V	CCCTTTCACCATC	.	299	19	211	0	.	0	0	0	0	0
PRSS35	167681	broad.mit.edu	37	6	84234143	84234143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRSS35-91	NM_153362	exon2	c.C983A	p.S328Y	GTGTGTCCGACGA	.	99	20	96	2	.	0	0	0	0	0
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84292059	84292059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNAP91-23	NM_001242792	exon22	c.C2031A	p.F677L	CGCCATGAAAGAA	.	47	12	59	0	.	1	0	1	0	0
NT5E	4907	ucsc.edu;bcgsc.ca	37	6	86181104	86181104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NT5E-93	NM_001204813	exon3	c.G712A	p.V238I	GTGGACGTCGTGG	.	158	14	148	2	.	3	2	1	0	0
NT5E	4907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86195053	86195053	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NT5E-93	NM_001204813	exon4	c.C852A	p.G284G	TTTTGGCAAATAC	.	186	43	139	1	.	2	1	1	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	8	8	0	0	T|0.089;G|0.911	0	0	0	0	0
USP45	85015	bcgsc.ca	37	6	99956553	99956553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP45-637	NM_001080481	exon3	c.G206T	p.R69I	AATCTTCTTTCTT	.	75	24	98	3	.	3	3	0	0	0
SIM1	6492	hgsc.bcm.edu;bcgsc.ca	37	6	100898139	100898139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIM1-94	NM_005068	exon3	c.G352T	p.E118X	ACTCACCTACCTG	.	84	7	59	0	.	0	0	0	0	0
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102503296	102503296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRIK2-157	NM_021956	exon15	c.C2403A	p.G801G	GAGGGGCAATGGT	.	145	45	94	0	.	0	0	0	0	0
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106975232	106975232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AIM1-139	NM_001624	exon5	c.G3241T	p.E1081X	TTAGAAGAAGGAG	.	238	27	185	1	.	0	0	0	0	0
AKD1	221264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109850273	109850273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKD1-91	NM_001145128	exon29	c.G3574T	p.D1192Y	TCGTATCAACCTG	.	24	6	19	0	.	0	0	0	0	0
FIG4	9896	broad.mit.edu	37	6	110112598	110112598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FIG4-69	NM_014845	exon20	c.G2200T	p.E734X	AGAGAAGAAGCTG	.	43	4	35	0	.	7	7	0	0	0
GOPC	57120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117923266	117923266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GOPC-676	NM_001017408	exon1	c.C186A	p.I62I	ATAAGTGATGTCC	.	114	20	95	0	.	3	3	0	0	0
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119285913	119285913	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM184A-519	NM_024581	exon16	c.G3057T	p.L1019L	TAATTCCAGCTGA	.	66	12	62	0	.	1	1	0	0	0
GJA1	2697	ucsc.edu	37	6	121768481	121768481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GJA1-92	NM_000165	exon2	c.C488A	p.S163Y	TCAAGTCTATCTT	.	247	42	205	4	.	55	51	4	0	0
NCOA7	135112	broad.mit.edu	37	6	126210486	126210486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCOA7-227	NM_001199619	exon10	c.G1286T	p.G429V	GTGGTGGAATGCA	.	87	23	65	2	.	2	2	0	0	0
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131927695	131927695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED23-24	NM_015979	exon14	c.C1309A	p.H437N	TGAGATGAATCCA	.	166	33	160	0	.	5	1	4	0	0
TAAR5	9038	bcgsc.ca	37	6	132910431	132910431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAAR5-91	NM_003967	exon1	c.G395T	p.R132L	CAGTGGCGGTCAA	.	291	14	231	2	.	0	0	0	0	0
MYB	4602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	135513461	135513461	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYB-838	NM_001161660	exon6	c.528-1G>T	.	TGTGCAGAACTGA	.	83	8	56	0	.	0	0	0	0	0
MYB	4602	bcgsc.ca	37	6	135517036	135517036	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYB-838	NM_001161659	exon9	c.G1099T	p.E367X	CCTGAAGAAAGCG	.	136	72	103	3	.	0	0	0	0	0
HECA	51696	broad.mit.edu	37	6	139487898	139487898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HECA-90	NM_016217	exon2	c.C749A	p.S250Y	AGAACTCCCAGGA	.	116	13	65	2	.	0	0	0	0	0
HIVEP2	3097	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143094923	143094923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP2-95	NM_006734	exon5	c.C953A	p.S318X	CCCAATGATTCTT	.	65	14	41	1	.	0	0	0	0	0
GRM1	2911	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	146708064	146708064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM1-1080	NM_000838	exon7	c.C1641A	p.C547X	GATTTGCACGGCC	.	109	26	91	2	.	0	0	0	0	0
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708146	146708146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM1-1080	NM_000838	exon7	c.C1723A	p.L575I	GCAGATCTAACAG	.	121	35	91	1	.	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	21	12	1	0	G|0.668;A|0.332	0	0	0	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151055067	151055067	+	Missense_Mutation	SNP	G	G	A	rs199980034		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG1-92	NM_001029884	exon3	c.G250A	p.E84K	GGCAGCGAAAGGC	.	122	15	86	2	G|0.999;A|0.001	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151647016	151647016	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP12-293	NM_144497	exon1	c.C21A	p.I7I	CACCATCACAGGT	.	70	12	50	0	.	0	0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152551838	152551838	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNE1-607	NM_033071	exon115	c.20827-1G>T	.	CTGGATCTGAACA	.	50	8	48	2	.	0	0	0	0	0
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155566830	155566830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TIAM2-93	NM_012454	exon18	c.C3617A	p.A1206D	TCTGTGCTAACCA	.	70	16	46	0	.	8	5	3	0	0
SLC22A2	6582	hgsc.bcm.edu	37	6	160663410	160663410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.T1304C	p.I435T	CATGAGATAATAA	.	114	14	124	0	.	0	0	0	0	0
SLC22A2	6582	bcgsc.ca	37	6	160663410	160663422	+	Frame_Shift_Del	DEL	ATAATAATTTTTA	ATAATAATTTTTA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	ATAATAATTTTTA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1292_1304del	p.431_435del	CATGAGATAATAA	.	118	6	125	0	.	0	0	0	0	0
SLC22A2	6582	hgsc.bcm.edu	37	6	160663414	160663438	+	In_Frame_Del	DEL	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1280_1300del	p.427_434del	AGATAATAATTTT	.	106	0	113	0	.	0	0	0	0	0
SLC22A2	6582	bcgsc.ca	37	6	160663424	160663435	+	Frame_Shift_Del	DEL	CCATTGTAGATC	CCATTGTAGATC	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CCATTGTAGATC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1280_1290del	p.427_430del	TTTTAGCCATTGT	.	92	6	99	0	.	0	0	0	0	0
C6orf123	26238	broad.mit.edu;bcgsc.ca	37	6	168188273	168188273	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	AGTGTTGAAATAA	.	33	5	29	0	.	0	0	0	0	0
MLLT4-AS1	653483	broad.mit.edu;bcgsc.ca	37	6	168226966	168226966	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	.	.	.	.	CGAACCGAACCTA	.	207	12	87	1	.	0	0	0	0	0
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2752257	2752257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMZ1-90	NM_133463	exon7	c.C1242A	p.C414X	CATGTGCATCCAG	.	194	20	81	0	.	1	1	0	0	0
AP5Z1	9907	broad.mit.edu	37	7	4828476	4828476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_014855	exon13	c.C1601T	p.A534V	GGTTGGCGCCACT	.	210	8	15	0	.	0	0	0	0	0
C1GALT1	56913	broad.mit.edu;bcgsc.ca	37	7	7283285	7283285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C1GALT1-90	NM_020156	exon4	c.C1019T	p.P340L	CCTTACCTGAACG	.	140	53	86	1	.	46	25	21	0	0
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20180669	20180669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MACC1-93	NM_182762	exon7	c.C2459G	p.P820R	GTCACAGGGTTTT	.	78	16	39	0	.	0	0	0	0	0
NUPL2	11097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23240027	23240027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NUPL2-228	NM_007342	exon7	c.G935T	p.G312V	GTTTTGGATCACC	.	167	16	82	0	.	32	29	3	0	0
WIPF3	644150	broad.mit.edu	37	7	29923681	29923681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WIPF3-69	NM_001080529	exon5	c.C571A	p.P191T	CCCCTTCCCTCTT	.	23	8	11	1	.	1	1	0	0	0
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33423320	33423320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BBS9-230	NM_198428	exon18	c.T1832C	p.L611P	TTTGGCTCATAAC	.	104	15	54	0	.	9	8	1	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255405	70255405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AUTS2-92	NM_015570	exon19	c.G3203T	p.W1068L	TCCACTGGGACCC	.	76	7	51	0	.	0	0	0	0	0
RHBDD2	57414	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75508485	75508485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RHBDD2-90	NM_001040456	exon1	c.C85A	p.L29M	CTCTCGCTGCTGG	.	170	44	65	1	.	211	149	62	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77764344	77764344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon17	c.C3025A	p.Q1009K	CCTCCTGAGGAAT	.	189	45	132	0	.	0	0	0	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	77814971	77814971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon13	c.G2286T	p.R762S	ACTGGTCCTGGGT	.	177	18	148	0	.	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86394717	86394717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM3-528	NM_000840	exon2	c.C256A	p.L86I	TACTTGCTACCAG	.	153	17	107	0	.	0	0	0	0	0
ABCB4	5244	broad.mit.edu;bcgsc.ca	37	7	87069022	87069022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCB4-96	NM_018850	exon14	c.C1692A	p.D564E	TTCTGTGTCCAAT	.	125	5	123	1	.	1	1	0	0	0
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90003657	90003657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GTPBP10-68	NM_033107	exon6	c.G580T	p.D194Y	TACAGTGATTTCA	.	69	15	57	0	.	0	0	0	0	0
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91792948	91792948	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001161528	exon1	c.C1569T	p.L523L	AAATATGAGGAGT	.	92	7	41	0	.	0	0	0	0	0
LRRD1	401387	ucsc.edu	37	7	91793876	91793876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001161528	exon1	c.G641T	p.R214M	AATATCCTTAAAT	.	168	26	130	2	.	0	0	0	0	0
KRIT1	889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91864777	91864777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRIT1-132	NM_194456	exon9	c.G669T	p.E223D	TGCTTTCTCTAGG	.	99	13	74	0	.	8	6	2	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99023158	99023158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001198879	exon7	c.G1144T	p.G382C	CTAGGCCACAGTC	.	94	25	78	0	.	5	4	1	0	0
PVRIG	79037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99817600	99817600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PVRIG-24	NM_024070	exon2	c.C67A	p.H23N	ATGGGGCACCGGA	.	309	76	231	1	.	3	2	1	0	0
MUC17	140453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100674469	100674469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MUC17-95	NM_001040105	exon2	c.C151A	p.Q51K	AACCGTCAGTGCC	.	265	72	196	1	.	0	0	0	0	0
MUC17	140453	ucsc.edu;bcgsc.ca	37	7	100681947	100681947	+	Missense_Mutation	SNP	A	A	T	rs139220229	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MUC17-95	NM_001040105	exon3	c.A7250T	p.H2417L	GCACCCATTCCAC	.	251	84	182	3	A|0.999;T|0.001	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103180836	103180836	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RELN-574	NM_173054	exon44	c.G6738T	p.V2246V	TAGGAGCACGGGT	.	107	37	55	0	.	0	0	0	0	0
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103243894	103243894	+	Missense_Mutation	SNP	C	C	G	rs114389730	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RELN-574	NM_173054	exon24	c.G3190C	p.A1064P	GAAGGGCAGCTTC	.	137	43	115	1	C|0.998;T|0.002	0	0	0	0	0
ZNF277	11179	ucsc.edu	37	7	111927088	111927088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF277-155	NM_021994	exon2	c.G252T	p.K84N	GCATAAGATTGTC	.	178	21	118	4	.	6	6	0	0	0
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112090794	112090794	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFRD1-91	NM_001007245	exon2	c.C51A	p.G17G	TGCTGGCGGCGGC	.	283	42	97	0	.	13	8	5	0	0
TFEC	22797	ucsc.edu;bcgsc.ca	37	7	115580883	115580883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TFEC-153	NM_012252	exon8	c.C766A	p.Q256K	AATTCTGCTCAGG	.	239	25	199	2	.	0	0	0	0	0
IQUB	154865	bcgsc.ca	37	7	123109376	123109376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IQUB-156	NM_178827	exon9	c.C1473A	p.F491L	GATGGTGAACTGC	.	114	42	99	4	.	0	0	0	0	0
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124491967	124491967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POT1-227	NM_015450	exon11	c.C908A	p.S303X	ACATCTGAATGCT	.	185	47	151	0	.	5	4	1	0	0
GRM8	2918	broad.mit.edu;ucsc.edu	37	7	126410002	126410002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM8-581	NM_000845	exon6	c.C1274A	p.P425H	TATCCAGGGCAGA	.	138	22	140	2	.	0	0	0	0	0
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127631020	127631020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SND1-92	NM_014390	exon16	c.G1690T	p.A564S	AGAGGAGCCCGAA	.	109	33	80	0	.	94	64	30	0	0
PLXNA4	91584	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	131872275	131872275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNA4-91	NM_020911	exon15	c.G2948T	p.S983I	ACGTTGCTTCCGG	.	116	26	91	2	.	0	0	0	0	0
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139727101	139727101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP12-525	NM_022750	exon10	c.C1603A	p.L535M	GGGCCAGGTTCTG	.	184	46	169	0	.	17	10	7	0	0
TAS2R4	50832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141478815	141478815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAS2R4-90	NM_016944	exon1	c.C527A	p.S176Y	TCTTGTCTTTAGT	.	202	23	135	1	.	0	0	0	0	0
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143098540	143098540	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA1-1436	NM_005232	exon3	c.G309T	p.V103V	GTCCCGCACGGTG	.	170	20	134	1	.	0	0	0	0	0
ZNF212	7988	hgsc.bcm.edu	37	7	148936892	148936892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF212-91	NM_012256	exon1	c.G23T	p.R8L	CTGCTCGGGTAAA	.	56	18	4	0	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149499235	149499235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198455	exon51	c.G7603T	p.G2535C	CCAGGGGGCAGCT	.	68	5	23	0	.	0	0	0	0	0
SSPO	23145	broad.mit.edu;bcgsc.ca	37	7	149503951	149503951	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198455	exon60	c.C8775A	p.G2925G	CCCCGGCTGCACC	.	116	35	66	1	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151879463	151879463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLL3-1398	NM_170606	exon36	c.G5482T	p.E1828X	ACAGTTCTTTATG	.	158	41	142	0	.	2	1	1	0	0
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	16944544	16944544	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EFHA2-91	NM_181723	exon7	c.G849T	p.L283L	AATGCTGGTAAGA	.	28	5	57	0	.	0	0	0	0	0
BMP1	649	broad.mit.edu;bcgsc.ca	37	8	22064484	22064484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BMP1-155	NM_006129	exon17	c.G2351T	p.R784L	GGCACCGGGTCAA	.	242	9	356	0	.	0	0	0	0	0
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23294562	23294562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENTPD4-92	NM_004901	exon10	c.C1259A	p.P420Q	TGAATTGGGGGCT	.	116	33	149	1	.	10	6	4	0	0
NEFM	4741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24774959	24774959	+	Nonsense_Mutation	SNP	G	G	T	rs138461187	by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEFM-577	NM_005382	exon3	c.G1591T	p.E531X	GAAGAAGAAGGCC	.	63	11	88	1	G|0.999;A|0.001	11	10	1	0	0
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48790325	48790325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRKDC-1515	.	.	.	.	ATTCTTCCATGAC	.	79	39	96	0	.	2	0	2	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733102	52733102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCMTD1-68	NM_052937	exon6	c.C883T	p.L295F	GAATAAGCTGATT	.	172	7	204	0	.	5	5	0	0	0
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52744112	52744112	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCMTD1-68	NM_052937	exon5	c.C598A	p.R200R	CAGTTCGCATAAT	.	38	7	40	0	.	7	7	0	0	0
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70591644	70591644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLCO5A1-94	NM_001146008	exon7	c.G1993T	p.A665S	GTTGGGCACATGC	.	185	78	207	1	.	0	0	0	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	72973992	72973992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPA1-230	NM_007332	exon7	c.G812T	p.G271V	CACCTTCCCTTCT	.	93	7	118	0	.	0	0	0	0	0
PI15	51050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75737605	75737605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PI15-515	NM_015886	exon2	c.G121C	p.E41Q	GATATTGAAGCAG	.	109	18	102	1	.	0	0	0	0	0
SLC10A5	347051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82607084	82607084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC10A5-90	NM_001010893	exon1	c.G124T	p.E42X	TGGTTTCTTCAGT	.	69	50	95	1	.	0	0	0	0	0
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87519275	87519275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_016033	exon2	c.G196T	p.E66X	AAGTTTCAAAACC	.	78	34	92	0	.	7	7	0	0	0
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95538629	95538629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIAA1429-92	NM_015496	exon8	c.G1843T	p.E615X	AGGATTCCAAAAG	.	59	8	66	0	.	3	1	2	0	0
GDF6	392255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	97157039	97157039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GDF6-228	NM_001001557	exon2	c.G1120A	p.A374T	GGGGCGCGATAAT	.	159	10	140	0	.	0	0	0	0	0
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100733234	100733234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13B-301	NM_017890	exon39	c.G7084T	p.D2362Y	ACAGAGGATCCAG	.	84	35	71	0	.	2	2	0	0	0
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103284937	103284937	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBR5-761	NM_015902	exon48	c.C6793A	p.R2265R	ATCTTCGACCAAA	.	112	60	147	1	.	2	1	1	0	0
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116632191	116632191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPS1-229	NM_014112	exon3	c.G134T	p.G45V	TTCTTTCCAGATA	.	85	36	109	0	.	0	0	0	0	0
SQLE	6713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126030309	126030309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SQLE-523	NM_003129	exon8	c.C1213A	p.L405I	GTTCTTCTTTTGG	.	36	32	50	1	.	1	0	1	0	0
THEM6	51337	broad.mit.edu;bcgsc.ca	37	8	143816819	143816819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_016647	exon2	c.A589G	p.M197V	CTCCGCATGGAGA	.	45	16	79	2	.	16	7	9	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	5	5	0	0	A|0.118;G|0.882	0	0	0	0	0
PYCRL	65263	bcgsc.ca	37	8	144687947	144687947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PYCRL-90	NM_023078	exon6	c.C784A	p.Q262K	CGCCCTGCTCCAG	.	96	44	53	2	.	20	4	16	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	18	0	18	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144996263	144996263	+	Silent	SNP	G	G	A	rs11988293	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEC-141	NM_201380	exon32	c.C8137T	p.L2713L	GCTCCAGCTGCTG	.	32	31	4	0	G|0.958;A|0.042	12	1	11	0	0
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4583052	4583052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC1A1-514	NM_004170	exon11	c.C1208A	p.S403Y	CCACATCTGCCAG	.	103	17	102	0	.	3	3	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	30	12	1	0	G|0.572;C|0.428	1	0	1	0	0
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6013222	6013222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP6-229	NM_012416	exon1	c.G2386T	p.E796X	AGTGTTCATCATT	.	83	24	64	0	.	14	6	8	0	0
LURAP1L	286343	hgsc.bcm.edu	37	9	12775864	12775864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_203403	exon1	c.C150T	p.G50G	TGGTGGCGGCGGC	.	51	7	23	0	.	1	1	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12821687	12821687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_203403	exon2	c.C615A	p.S205R	TGACAGCTCCCTC	.	110	7	116	2	.	12	8	4	0	0
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	13176296	13176296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_003829	exon20	c.G2770T	p.G924W	CAGGCCCCATACT	.	137	11	108	0	.	0	0	0	0	0
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13188983	13188983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_003829	exon17	c.G2164T	p.D722Y	CTGGATCAATTGG	.	74	16	54	0	.	0	0	0	0	0
BNC2	54796	broad.mit.edu;ucsc.edu	37	9	16437424	16437424	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BNC2-92	NM_017637	exon6	c.C768A	p.S256S	CACAATGGATTTG	.	47	7	61	1	.	0	0	0	0	0
MLLT3	4300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414048	20414048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLLT3-660	NM_004529	exon5	c.G796T	p.D266Y	TACTATCTGGTTT	.	243	31	155	1	.	8	5	3	0	0
FOCAD	54914	broad.mit.edu	37	9	20929356	20929356	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_017794	exon29	c.3079-1G>T	.	GTCCTAGAAGTCC	.	71	12	52	1	.	1	0	1	0	0
IFNW1	3467	broad.mit.edu	37	9	21141179	21141179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFNW1-90	NM_002177	exon1	c.G391T	p.E131X	CAGATTCTCCTTC	.	122	14	92	2	.	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	35	21	1	0	G|0.807;C|0.193	10	3	7	0	0
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32430444	32430444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACO1-226	NM_002197	exon14	c.C1598A	p.S533Y	TACTATCTGGAAA	.	180	20	125	0	.	27	24	3	0	0
CNTFR	1271	broad.mit.edu;ucsc.edu	37	9	34568922	34568922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNTFR-518	NM_147164	exon3	c.G58T	p.V20F	CGTAGACAACTGC	.	170	18	149	2	.	0	0	0	0	0
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35682151	35682151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPM2-515	NM_213674	exon9	c.C782A	p.A261D	GCACTGGCCAAGG	.	115	23	75	0	.	9	8	1	0	0
SPAG8	26206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35810505	35810505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPAG8-91	NM_001039592	exon5	c.G1131T	p.E377D	CTCAACCTCGAAG	.	148	34	102	1	.	1	1	0	0	0
RECK	8434	broad.mit.edu;bcgsc.ca	37	9	36102095	36102095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RECK-93	NM_021111	exon12	c.G1303T	p.D435Y	AGATCAGATTGTG	.	81	5	66	0	.	0	0	0	0	0
GLIPR2	152007	ucsc.edu	37	9	36147782	36147782	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR2-93	NM_022343	exon2	c.14-1G>T	.	ATTCCAGCTTCCA	.	84	30	80	3	.	0	0	0	0	0
SPATA31A3	727830	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	40705691	40705691	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001083124	exon4	c.C3348A	p.P1116P	GAAGCCCAACTTA	.	429	61	321	0	.	0	0	0	0	0
APBA1	320	hgsc.bcm.edu	37	9	72131953	72131953	+	Silent	SNP	C	C	T	rs149995729		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	APBA1-91	NM_001163	exon2	c.G174A	p.E58E	GAGGTCCTCGAGG	.	14	8	0	0	C|0.995;T|0.005	0	0	0	0	0
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72741314	72741314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAMDC2-91	NM_153267	exon6	c.G883T	p.A295S	TTCAGTGCTCCTT	.	131	25	86	0	.	1	1	0	0	0
TRPM3	80036	broad.mit.edu	37	9	73240174	73240174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM3-521	NM_001007471	exon13	c.C1706A	p.A569D	CGATAAGCCCCGC	.	69	3	96	0	.	0	0	0	0	0
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77411734	77411734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM6-335	NM_017662	exon18	c.C2314A	p.P772T	ACTGGGGAACATG	.	170	56	140	1	.	0	0	0	0	0
VPS13A	23230	ucsc.edu	37	9	79968553	79968553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13A-161	NM_001018038	exon54	c.A7648G	p.T2550A	GGCATTACAAGGT	.	239	29	207	3	.	0	0	0	0	0
C9orf3	84909	broad.mit.edu	37	9	97522087	97522087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C9orf3-91	NM_001193331	exon2	c.G22T	p.A8S	GACCCTGCCAGAG	.	115	18	97	2	.	0	0	0	0	0
ERCC6L2	375748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98728916	98728916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001010895	exon14	c.C2053A	p.H685N	AAAGAGCATCAAG	.	139	37	144	1	.	1	0	1	0	0
TDRD7	23424	broad.mit.edu;bcgsc.ca	37	9	100234690	100234690	+	Silent	SNP	G	G	T	rs200338871	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TDRD7-93	NM_014290	exon10	c.G1857T	p.L619L	TGTTCTGTACGAT	.	195	9	170	1	G|1.000;A|0.000	8	8	0	0	0
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	101606450	101606450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GALNT12-92	NM_024642	exon8	c.C1417A	p.Q473K	GGACACCAGGTCA	.	122	8	103	0	.	0	0	0	0	0
MRPL50	54534	broad.mit.edu;bcgsc.ca	37	9	104152827	104152827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL50-226	NM_019051	exon2	c.C398A	p.P133H	TGAATAGGGACAT	.	208	7	140	0	.	62	60	2	0	0
OR13C5	138799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107361140	107361140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR13C5-72	NM_001004482	exon1	c.G555T	p.M185I	CAGTTTCATGACA	.	451	51	376	0	.	0	0	0	0	0
TAL2	6887	broad.mit.edu	37	9	108425002	108425002	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAL2-636	NM_005421	exon1	c.G225T	p.L75L	CATTCTGGGGCTC	.	96	4	57	0	.	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	16	9	0	0	C|0.917;T|0.083	1	1	0	0	0
DNAJC25-GNG10	552891	hgsc.bcm.edu	37	9	114393784	114393784	+	Missense_Mutation	SNP	G	G	A	rs10980984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAJC25-GNG10-159	NM_004125	exon1	c.G97A	p.V33M	CTGCTGGTGCGGC	.	7	7	0	0	G|0.806;A|0.194	5	3	2	0	0
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114508596	114508596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C9orf84-92	NM_173521	exon8	c.C805A	p.L269I	GGAATAGAGGAGT	.	75	15	58	0	.	1	1	0	0	0
AMBP	259	broad.mit.edu	37	9	116840418	116840418	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMBP-91	NM_001633	exon1	c.G72T	p.T24T	GGGCGGCGTTGGC	.	114	12	75	1	.	1	1	0	0	0
PAPPA	5069	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950037	118950037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAPPA-77	NM_002581	exon2	c.C1020A	p.S340R	TGCCAGCTACAAT	.	160	36	130	2	.	0	0	0	0	0
PSMD5	5711	broad.mit.edu	37	9	123580434	123580434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PSMD5-90	NM_005047	exon10	c.C1265A	p.A422E	TGGTTTGCAATGG	.	62	6	34	0	.	0	0	0	0	0
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123624881	123624881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PHF19-136	NM_015651	exon11	c.G1115T	p.G372V	CTCTTTCCTCTCT	.	105	24	91	0	.	4	4	0	0	0
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130427557	130427557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STXBP1-91	NM_001032221	exon8	c.C610A	p.L204I	GCTCAGCTAATCC	.	133	22	140	0	.	15	13	2	0	0
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131559410	131559410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D13-90	NM_018201	exon7	c.G460T	p.E154X	CAGAATGAGTTTG	.	133	39	98	0	.	23	20	3	0	0
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134501621	134501621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAPGEF1-849	NM_198679	exon10	c.G1393T	p.G465W	GCTGCCCTGGGGC	.	172	51	128	0	.	22	18	4	0	0
VAV2	7410	broad.mit.edu;bcgsc.ca	37	9	136648640	136648640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VAV2-1273	NM_001134398	exon19	c.C1708A	p.P570T	AGGGAGGTATCAC	.	185	9	170	1	.	38	38	0	0	0
ARSH	347527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2942061	2942061	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARSH-130	NM_001011719	exon6	c.902-1G>T	.	TCTCCAGGTAAAA	.	272	59	205	0	.	0	0	0	0	0
MXRA5	25878	broad.mit.edu;bcgsc.ca	37	X	3241451	3241451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MXRA5-136	NM_015419	exon5	c.G2275T	p.A759S	CTTCTGCAACATT	.	151	7	92	0	.	3	3	0	0	0
MXRA5	25878	bcgsc.ca	37	X	3242694	3242694	+	Missense_Mutation	SNP	C	C	A	rs112265369	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MXRA5-136	NM_015419	exon5	c.G1032T	p.K344N	GTGAATCTTGTAC	.	281	65	219	4	C|0.999;T|0.001	1	0	1	0	0
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10106875	10106875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WWC3-134	NM_015691	exon21	c.C2983A	p.Q995K	CTGCGGCAGCGGT	.	239	60	119	0	.	7	7	0	0	0
MID1	4281	ucsc.edu;bcgsc.ca	37	X	10535274	10535274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MID1-229	NM_001193277	exon2	c.C314A	p.A105D	TCAAAGGCCCGCT	.	219	126	163	2	.	0	0	0	0	0
FRMPD4	9758	bcgsc.ca	37	X	12736870	12736870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FRMPD4-263	NM_014728	exon16	c.G3925T	p.D1309Y	TTGAGAGATGGAT	.	369	49	270	4	.	0	0	0	0	0
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23019100	23019100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DDX53-228	NM_182699	exon1	c.C926A	p.A309D	AGTTGGCTCTTCA	.	257	57	187	0	.	0	0	0	0	0
SUPT20HL1	100130302	ucsc.edu;bcgsc.ca	37	X	24382644	24382644	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001136234	exon1	c.C1767T	p.P589P	GCCCCCCACCAAA	.	387	48	259	3	.	0	0	0	0	0
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	27840275	27840275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGEB10-130	NM_182506	exon3	c.C852A	p.S284R	AACCAGCAAGATG	.	116	15	80	0	.	0	0	0	0	0
MAGEB2	4113	broad.mit.edu;bcgsc.ca	37	X	30237541	30237541	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGEB2-131	NM_002364	exon2	c.G844T	p.E282X	TATGCTGAAACCA	.	245	15	211	2	.	0	0	0	0	0
DMD	1756	broad.mit.edu	37	X	31697546	31697546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMD-265	NM_004006	exon53	c.G7818T	p.W2606C	CTCCTTCCATGAC	.	79	8	62	1	.	0	0	0	0	0
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	32407761	32407761	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMD-265	NM_004006	exon32	c.C4375A	p.R1459R	ATAATCGAAACTT	.	109	6	68	0	.	0	0	0	0	0
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED14-289	NM_004229	exon10	c.C1187A	p.S396X	TCTATTGATAAGT	.	141	16	98	0	.	8	8	0	0	0
GPR34	2857	broad.mit.edu;bcgsc.ca	37	X	41554930	41554930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR34-131	NM_001097579	exon3	c.G44T	p.S15I	TCAGCAGCTGGCC	.	703	25	465	2	.	1	1	0	0	0
MAOA	4128	bcgsc.ca	37	X	43590512	43590512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAOA-194	NM_000240	exon7	c.G670T	p.G224C	GGATCTGGTCAAG	.	267	25	223	3	.	80	70	10	0	0
CDK16	5127	ucsc.edu;bcgsc.ca	37	X	47086026	47086026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDK16-564	NM_001170460	exon10	c.G1183T	p.E395X	TCCAATGAGGTGG	.	302	58	246	4	.	118	91	27	0	0
ZNF182	7569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47836739	47836739	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF182-132	NM_006962	exon7	c.C747A	p.L249L	TACAATGAGGTGT	.	85	20	53	1	.	6	3	3	0	0
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48417292	48417292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D25-131	NM_002536	exon4	c.G396T	p.L132F	CCCATTGCTAGAA	.	232	16	184	1	.	1	1	0	0	0
WDR45	11152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48934319	48934319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR45-131	NM_007075	exon6	c.G329A	p.R110H	CGCATGCGCACAG	.	445	92	287	2	.	114	114	0	0	0
USP27X	389856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49646192	49646192	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP27X-472	NM_001145073	exon1	c.G1282T	p.E428X	GAGTCAGAAAAAG	.	336	68	243	1	.	17	17	0	0	0
CCNB3	85417	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50052072	50052072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCNB3-482	NM_033031	exon5	c.G903T	p.K301N	TAGGAAGCCACCA	.	144	26	86	1	.	1	1	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53607986	53607986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HUWE1-280	NM_031407	exon43	c.G5521T	p.V1841F	GAACAACCTAGTA	.	129	21	87	0	.	0	0	0	0	0
AMER1	139285	ucsc.edu	37	X	63409906	63409906	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152424	exon2	c.G3261T	p.L1087L	CCTGGGCAGCTGA	.	354	42	208	4	.	1	1	0	0	0
MTMR8	55613	broad.mit.edu	37	X	63579298	63579298	+	Missense_Mutation	SNP	C	C	A	rs201096276	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MTMR8-195	NM_017677	exon2	c.G134T	p.R45L	TCTTTCCGGGCTG	.	82	5	59	1	.	0	0	0	0	0
AR	367	broad.mit.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs200185441		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AR-661	NM_000044	exon1	c.A173T	p.Q58L	TGCTGCAGCAGCA	.	74	4	35	0	.	0	0	0	0	0
YIPF6	286451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	67741213	67741213	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YIPF6-130	NM_001195214	exon4	c.180-1G>T	.	TTCTCAGAATGCT	.	153	82	84	0	.	0	0	0	0	0
YIPF6	286451	broad.mit.edu	37	X	67751770	67751770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YIPF6-130	NM_173834	exon7	c.C640G	p.L214V	AGAGCCCTAGCTG	.	91	11	75	2	.	21	8	13	0	0
STARD8	9754	ucsc.edu;bcgsc.ca	37	X	67940921	67940921	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STARD8-196	NM_001142503	exon9	c.C2205A	p.I735I	GCCCATCTTCACC	.	355	87	227	3	.	1	0	1	0	0
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70352313	70352313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED12-272	NM_005120	exon31	c.C4340A	p.A1447D	AGGCTGCTGGGGA	.	301	29	219	0	.	26	24	2	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70596893	70596893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_004606	exon5	c.C626A	p.S209X	CTGACTCAGAATC	.	211	43	139	0	.	0	0	0	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70598293	70598293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_004606	exon7	c.G1202T	p.R401I	AATCTAGAATGAT	.	202	12	169	0	.	0	0	0	0	0
CDX4	1046	hgsc.bcm.edu;broad.mit.edu	37	X	72667507	72667507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDX4-130	NM_005193	exon1	c.G418T	p.D140Y	CCGACGGACGCAG	.	78	12	25	0	.	0	0	0	0	0
ATRX	546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	76918898	76918898	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATRX-248	NM_000489	exon12	c.G4093T	p.E1365X	TGACTTCTTTATG	.	128	26	108	1	.	1	1	0	0	0
SATL1	340562	bcgsc.ca	37	X	84362768	84362768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SATL1-175	NM_001012980	exon1	c.C1207A	p.Q403K	CTGATTGGCTGGT	.	547	47	398	6	.	0	0	0	0	0
SYTL4	94121	bcgsc.ca	37	X	99941088	99941088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYTL4-132	NM_001129896	exon14	c.G1348T	p.G450C	AACGACCATGATG	.	157	42	139	4	.	0	0	0	0	0
NOX1	27035	ucsc.edu;bcgsc.ca	37	X	100105369	100105369	+	Missense_Mutation	SNP	T	T	C	rs35468984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NOX1-131	NM_013955	exon9	c.A904G	p.M302V	GGTGCATAACAAC	.	320	38	245	2	T|0.691;0|0.003	0	0	0	0	0
XKRX	402415	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100169962	100169962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	XKRX-130	NM_212559	exon3	c.G715T	p.E239X	GGACTTCTAGTGG	.	358	64	296	2	.	0	0	0	0	0
DRP2	1821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100500030	100500030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DRP2-132	NM_001939	exon10	c.G1079T	p.R360I	GGGAAAGAGCAAT	.	314	41	218	0	.	0	0	0	0	0
VSIG1	340547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107320376	107320376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VSIG1-132	NM_001170553	exon8	c.C1037A	p.T346N	ATGAGACTGGCCC	.	296	62	157	0	.	0	0	0	0	0
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107829959	107829959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL4A5-133	NM_000495	exon19	c.G1147T	p.G383C	CCACCTGGCCTTC	.	433	15	398	1	.	1	1	0	0	0
ALG13	79868	ucsc.edu;bcgsc.ca	37	X	110980045	110980045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ALG13-130	NM_001099922	exon23	c.C2633A	p.S878X	CCACTTCAGTTTC	.	263	64	204	3	.	5	5	0	0	0
ZBTB33	10009	broad.mit.edu;bcgsc.ca	37	X	119387850	119387850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZBTB33-132	NM_006777	exon2	c.G580T	p.D194Y	GATGATGATGTCA	.	146	21	88	1	.	1	1	0	0	0
ELF4	2000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129205092	129205092	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELF4-659	NM_001421	exon7	c.C732A	p.S244S	AGCTTTGGAGTCC	.	147	13	101	3	.	8	3	5	0	0
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130411109	130411109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGSF1-133	NM_001170961	exon14	c.G2427T	p.Q809H	CATATGCTGGTGG	.	136	10	84	0	.	1	1	0	0	0
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	132352122	132352122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TFDP3-131	NM_016521	exon1	c.C166A	p.Q56K	CCACTTGCTGGTC	.	234	23	170	0	.	0	0	0	0	0
GPR112	139378	bcgsc.ca	37	X	135427145	135427145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR112-183	NM_153834	exon6	c.C1280A	p.A427E	CTGGGGCACTCCC	.	486	23	389	4	.	0	0	0	0	0
GABRQ	55879	bcgsc.ca	37	X	151821117	151821117	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABRQ-133	NM_018558	exon9	c.C1272A	p.A424A	GCAGGCCCAGCTG	.	470	57	313	4	.	0	0	0	0	0
PNMA3	29944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152226031	152226031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PNMA3-600	NM_013364	exon2	c.G619A	p.E207K	CTGATGGAATGCT	.	102	12	64	1	.	5	5	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152827696	152827696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATP2B3-109	NM_001001344	exon18	c.G3155T	p.G1052V	TCTGGGGACAGGT	.	124	32	79	0	.	0	0	0	0	0
PLXNB3	5365	bcgsc.ca	37	X	153042778	153042778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNB3-130	NM_001163257	exon31	c.G5112T	p.E1704D	GCGCGAGCCAGCA	.	369	27	186	2	.	1	1	0	0	0
ARHGAP4	393	bcgsc.ca	37	X	153184648	153184648	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP4-227	NM_001164741	exon7	c.C891A	p.V297V	GTTACTGACAGCA	.	298	16	188	2	.	0	0	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP4-3-22	NM_033187	exon1	c.196_197insCTGACCACCTGCTGC	p.R66delinsLTTCCR	TGGTCCTGCAGCA	.	264	25	205	0	.	0	0	0	0	0
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42907077	42907078	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LIPE-154	NM_005357	exon9	c.2649_2650insG	p.G883fs	GGAGTTTCCCCTC	.	39	20	29	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	37	0	2	0	.	0	0	0	0	0
