Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TTLL10	254173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1117120	1117120	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL10-153	NM_001130045	exon9	c.756-1G>A	.	GCTGCAGGCTGGA	.	392	94	298	0	.	0	0	0	0	0
MXRA8	54587	hgsc.bcm.edu	37	1	1290077	1290077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA8-90	NM_032348	exon5	c.G934A	p.G312S	GGGCGCCGCTGTG	.	36	14	2	0	.	0	0	0	0	0
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1334033	1334033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNL2-70	NM_030937	exon2	c.C307T	p.Q103X	ACACCTGCCCGGT	.	245	124	215	0	.	0	0	0	0	0
GNB1	2782	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1747196	1747196	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNB1-227	NM_002074	exon5	c.A202C	p.R68R	CCTACCTGGAGTC	.	176	88	115	1	.	0	0	0	0	0
PANK4	55229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2440355	2440355	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PANK4-158	NM_018216	exon19	c.G2253T	p.A751A	CAGCCACGCGTTC	.	220	104	77	0	.	0	0	0	0	0
PANK4	55229	broad.mit.edu;bcgsc.ca	37	1	2445885	2445885	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PANK4-158	NM_018216	exon11	c.G1395C	p.A465A	CTGGCTCGCCACT	.	90	29	87	2	.	0	0	0	0	0
MMEL1	79258	broad.mit.edu	37	1	2560819	2560821	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMEL1-90	NM_033467	exon2	c.103_105del	p.35_35del	GGTCACCAGCAGC	.	225	7	30	0	.	0	0	0	0	0
PRDM16	63976	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3328612	3328612	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM16-660	NM_022114	exon9	c.G1851C	p.T617T	GGACACGACCACG	.	298	62	174	1	.	0	0	0	0	0
TP73	7161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3639930	3639930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP73-415	NM_005427	exon6	c.C629T	p.P210L	CTGCTCCAGCCAG	.	731	161	597	2	.	0	0	0	0	0
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	3669101	3669101	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC27-91	NM_152492	exon1	c.56delG	p.R19fs	ATCCACGGGAAAA	.	176	88	101	0	.	0	0	0	0	0
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6196856	6196856	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD5-719	NM_015557	exon16	c.C2506T	p.L836L	AGCCCAGGATGGC	.	158	37	104	0	.	0	0	0	0	0
CAMTA1	23261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7723792	7723792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAMTA1-520	NM_015215	exon9	c.G1185T	p.Q395H	GTCCCAGAGCGCC	.	227	118	170	1	.	0	0	0	0	0
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7869982	7869982	+	Nonsense_Mutation	SNP	C	C	A	rs140055805	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER3-93	NM_016831	exon11	c.C1269A	p.Y423X	CGGCTACGGGAGC	.	297	143	215	1	C|1.000;T|0.000	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	0	0	0	0	0
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12339596	12339596	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS13D-95	NM_015378	exon20	c.G4491A	p.L1497L	TAAACTGGAGAAG	.	169	49	156	0	.	0	0	0	0	0
VPS13D	55187	broad.mit.edu	37	1	12476832	12476832	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS13D-95	NM_015378	exon65	c.G12285T	p.G4095G	TGTCGGGGGCCTC	.	68	17	46	2	.	0	0	0	0	0
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12854331	12854331	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF1-22	NM_023013	exon3	c.G555C	p.L185L	TAAGCTGGTCAAT	.	289	134	261	0	.	0	0	0	0	0
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12887562	12887562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146344	exon3	c.C295A	p.P99T	TCCTTGGACAGTC	.	72	21	43	0	.	0	0	0	0	0
PRAMEF2	65122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12918933	12918933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF2-68	NM_023014	exon2	c.G69C	p.L23F	GGCCTTGTCCATC	.	152	90	165	1	.	0	0	0	0	0
PRAMEF10	343071	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12954838	12954838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF10-90	NM_001039361	exon3	c.G445T	p.V149L	TGAACACCTTCAA	.	143	69	146	1	.	0	0	0	0	0
CROCC	9696	hgsc.bcm.edu	37	1	17265519	17265519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CROCC-137	NM_014675	exon12	c.G1490T	p.R497L	CACCGCGGCGCTC	.	20	12	1	0	.	0	0	0	0	0
ATP13A2	23400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17313430	17313430	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP13A2-93	NM_022089	exon27	c.A3105G	p.T1035T	GGCCACTGTCCTG	.	159	75	72	1	.	0	0	0	0	0
PAX7	5081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19018406	19018406	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX7-1630	NM_002584	exon5	c.G745T	p.E249X	CGCGAGGAGCTGG	.	203	46	169	1	.	0	0	0	0	0
PLA2G5	5322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20416346	20416346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G5-515	NM_000929	exon4	c.C250T	p.Q84X	CGCACACAGTCCT	.	181	48	148	0	.	0	0	0	0	0
VWA5B1	127731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20669628	20669628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001039500	exon16	c.C2368A	p.P790T	GACCCCCCAGCCG	.	221	57	70	0	.	0	0	0	0	0
VWA5B1	127731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20680294	20680294	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001039500	exon22	c.C3186A	p.A1062A	CGAAGCCTTCTGT	.	139	62	112	2	.	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22179236	22179236	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPG2-141	NM_005529	exon52	c.A6681T	p.L2227L	GGCCTCTAGGGGG	.	171	43	110	0	.	0	0	0	0	0
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26509747	26509747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNKSR1-846	NM_006314	exon7	c.G684T	p.Q228H	CACCCAGGTGAGA	.	317	80	277	0	.	0	0	0	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	8	8	0	0	T|0.065;G|0.935	0	0	0	0	0
WDTC1	23038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27627876	27627876	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDTC1-91	NM_001276252	exon13	c.G1392A	p.P464P	ATTTCCGGAGCAG	.	119	24	119	0	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29189702	29189702	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPRD1-69	NM_000911	exon3	c.C1026A	p.P342P	AGACCCCAGCAGC	.	33	10	3	0	.	0	0	0	0	0
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29520573	29520573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MECR-91	NM_016011	exon10	c.G1083T	p.M361I	GGGCTTCATGGAG	.	102	29	76	0	.	0	0	0	0	0
PTPRU	10076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29644272	29644272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRU-291	NM_005704	exon26	c.G3556T	p.V1186F	AACTCGGTCACCC	.	108	32	35	1	.	0	0	0	0	0
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31447604	31447604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUM1-92	NM_014676	exon10	c.G1400T	p.G467V	TAGACTCCCCAGG	.	116	46	85	0	.	0	0	0	0	0
BAI2	576	bcgsc.ca	37	1	32196920	32196920	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAI2-526	NM_001703	exon29	c.G3861T	p.V1287V	AGGGCCCACGAGG	.	406	210	309	4	.	0	0	0	0	0
PTP4A2	8073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32374453	32374453	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTP4A2-650	NM_080391	exon6	c.G504A	p.X168X	TTCCTTCTACTGA	.	92	41	91	0	.	0	0	0	0	0
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32741016	32741016	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCK-1378	NM_005356	exon5	c.G373T	p.E125X	GAGCCCGAACCGT	.	398	198	292	0	.	0	0	0	0	0
CSMD2	114784	ucsc.edu;bcgsc.ca	37	1	34006180	34006180	+	Silent	SNP	C	C	G	rs1532308	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD2-103	NM_052896	exon59	c.G9144C	p.A3048A	GAACACCGCGGGC	.	390	201	280	3	C|0.991;T|0.009	0	0	0	0	0
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34329806	34329806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMGB4-90	NM_145205	exon2	c.T14A	p.I5N	AAGAAATCCAGCT	.	163	37	145	0	.	0	0	0	0	0
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34662954	34662954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_001134734	exon2	c.C449A	p.S150Y	GCAGCTCTCCCGA	.	100	20	81	0	.	0	0	0	0	0
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34663403	34663403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_001134734	exon2	c.C898A	p.R300S	CCTGCACGTCCTG	.	107	53	101	0	.	0	0	0	0	0
RSPO1	284654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38078537	38078537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPO1-22	NM_001242908	exon7	c.G682A	p.A228T	TCCTGGCCAGGTT	.	95	27	94	0	.	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227086	38227086	+	Missense_Mutation	SNP	A	A	T	rs4653328	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA10-1246	NM_001099439	exon3	c.T841A	p.F281I	CGCAGAAGTCACC	.	16	10	2	0	A|0.665;T|0.335	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39549943	39549943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon3	c.G53T	p.R18L	GTGAGCGGTCTTG	.	138	33	101	0	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39818684	39818684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon40	c.A5019T	p.K1673N	GAGTAAAGCAGCA	.	64	29	66	0	.	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42045967	42045967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.G4502T	p.S1501I	GACAGGCTGGACA	.	133	35	103	0	.	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42047294	42047294	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.T3175C	p.L1059L	CCTCCAACTCAGA	.	114	21	94	0	.	0	0	0	0	0
TCTEX1D4	343521	broad.mit.edu	37	1	45271742	45271742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCTEX1D4-91	NM_001013632	exon2	c.C599T	p.A200V	ACCGAGGCCAGCC	.	67	5	26	0	.	0	0	0	0	0
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	50610817	50610817	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144775	exon2	c.C249T	p.F83F	TCTCTTCGGGAGC	.	187	73	181	0	.	0	0	0	0	0
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	50659488	50659488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144775	exon4	c.G457T	p.V153F	CTCTATGTTAGCG	.	259	62	219	0	.	0	0	0	0	0
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52740214	52740214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFYVE9-230	NM_004799	exon8	c.G2704C	p.D902H	CCTGAAGATGGCC	.	125	8	119	0	.	0	0	0	0	0
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67306280	67306280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR78-92	NM_207014	exon9	c.G1366A	p.E456K	CCTCCTCCTTCTT	.	143	38	98	0	.	0	0	0	0	0
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70446116	70446116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon7	c.G652T	p.A218S	AATAATGCATTAC	.	72	25	74	0	.	0	0	0	0	0
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70504166	70504166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon19	c.C2545A	p.P849T	AGAACCCCTAGTC	.	269	59	228	0	.	0	0	0	0	0
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70505345	70505345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon19	c.G3724A	p.D1242N	TATGGTGACAAGC	.	139	31	126	1	.	0	0	0	0	0
SRSF11	9295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70701183	70701183	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRSF11-227	NM_001190987	exon6	c.541-1G>A	.	TTTACAGTCTCTT	.	31	7	40	0	.	0	0	0	0	0
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74507594	74507594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRIQ3-92	NM_001105659	exon7	c.G1021T	p.V341L	CATCCACAATTTC	.	31	9	19	0	.	0	0	0	0	0
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75622718	75622718	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX8-93	NM_001001933	exon9	c.C951A	p.P317P	CGTGCCCCAAGAT	.	237	58	205	0	.	0	0	0	0	0
ASB17	127247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	76397853	76397853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB17-227	NM_080868	exon1	c.T124G	p.C42G	CGTAACAGTGATA	.	166	38	121	0	.	0	0	0	0	0
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	76877898	76877898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GALNAC3-95	NM_001160011	exon3	c.C419T	p.P140L	AAAACCCTGATTA	.	198	90	189	0	.	0	0	0	0	0
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77759610	77759610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_174858	exon3	c.C380A	p.P127H	TTGATCCTACCAG	.	161	21	157	0	.	0	0	0	0	0
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77987587	77987587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_174858	exon12	c.T1387A	p.Y463N	GACGGCTATCCTC	.	90	43	57	0	.	0	0	0	0	0
ELTD1	64123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79403806	79403806	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELTD1-24	NM_022159	exon5	c.C555A	p.T185T	AGAAAGGGTGTCC	.	195	38	221	3	.	0	0	0	0	0
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	82372734	82372734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPHN2-525	NM_012302	exon3	c.G106T	p.V36L	GGGCTGGTGAGGC	.	110	54	85	0	.	0	0	0	0	0
PRKACB	5567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84649726	84649726	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKACB-1083	NM_182948	exon4	c.A385T	p.K129X	GTTGTTAAACTGA	.	125	57	115	1	.	0	0	0	0	0
LPAR3	23566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85279733	85279733	+	Silent	SNP	G	G	T	rs141619600	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPAR3-502	NM_012152	exon3	c.C858A	p.S286S	CACGACGGAGTTG	.	192	42	149	1	G|1.000;A|0.000	0	0	0	0	0
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86841918	86841918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ODF2L-69	NM_001007022	exon8	c.C808G	p.Q270E	ATACCTGATCTCT	.	68	16	61	0	.	0	0	0	0	0
GBP4	115361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89652054	89652054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GBP4-90	NM_052941	exon10	c.C1669A	p.L557I	CTCTGAGAAGGTT	.	56	13	63	0	.	0	0	0	0	0
ZNF644	84146	ucsc.edu;bcgsc.ca	37	1	91406670	91406670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF644-155	NM_201269	exon3	c.G241T	p.D81Y	ATTTGTCCTTTGA	.	170	71	182	3	.	0	0	0	0	0
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91866610	91866610	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HFM1-112	NM_001017975	exon2	c.T30A	p.S10S	TTCCAAAGAAAAC	.	132	70	146	0	.	0	0	0	0	0
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92182149	92182149	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR3-93	NM_003243	exon11	c.G1683T	p.L561L	GGTGAACAGGGAA	.	226	67	223	0	.	0	0	0	0	0
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	92193214	92193214	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR3-93	NM_001195684	exon9	c.885+2T>-	.	CAACTTACAATAA	.	92	20	98	0	.	0	0	0	0	0
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92568096	92568096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTBD8-91	NM_183242	exon3	c.G414T	p.M138I	GATAATGGAGATT	.	121	57	125	0	.	0	0	0	0	0
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99164270	99164270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNX7-229	NM_015976	exon6	c.G847A	p.D283N	TATTTTGATGAAA	.	36	8	40	0	.	0	0	0	0	0
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99764707	99764707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_001166252	exon4	c.A655T	p.N219Y	TCTCTGAATGTAT	.	153	30	146	0	.	0	0	0	0	0
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99771539	99771539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.C1265T	p.T422I	CCAATACCCCATC	.	140	43	150	0	.	0	0	0	0	0
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99771739	99771739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1465T	p.G489W	AGGGTAGGGGTGA	.	318	78	344	1	.	0	0	0	0	0
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99772033	99772033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1759T	p.G587C	CAGCAGGGTGTCC	.	366	102	313	1	.	0	0	0	0	0
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99772258	99772258	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1984T	p.E662X	ACTTACGAGCTCA	.	243	120	255	0	.	0	0	0	0	0
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100588833	100588833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SASS6-70	NM_194292	exon3	c.C139T	p.R47C	TCAGACGAATAAC	.	83	38	91	0	.	0	0	0	0	0
TRMT13	54482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100606445	100606445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_019083	exon7	c.T539G	p.L180R	AGTTACTTGGTCC	.	83	32	95	0	.	0	0	0	0	0
CDC14A	8556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100964629	100964629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC14A-290	NM_003672	exon15	c.G1566T	p.Q522H	CTCCCAGCCAACT	.	172	44	137	0	.	0	0	0	0	0
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	103345394	103345394	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL11A1-586	NM_080629	exon66	c.C5155A	p.R1719R	TTTGCCGAGCAGA	.	137	76	142	1	.	0	0	0	0	0
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103363705	103363705	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL11A1-586	NM_080629	exon57	c.C4314A	p.G1438G	ATCTTGGCCTGCA	.	156	75	126	1	.	0	0	0	0	0
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	108023431	108023431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTNG1-140	NM_001113226	exon8	c.T1589A	p.L530Q	CCACGCTGCTGGG	.	89	34	38	0	.	0	0	0	0	0
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108138963	108138963	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon25	c.G2221T	p.E741X	CAAGTTCCTTTGG	.	59	12	51	0	.	0	0	0	0	0
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108417589	108417589	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon2	c.G255T	p.T85T	TCCAAACGTCTCA	.	172	31	192	0	.	0	0	0	0	0
FAM102B	284611	bcgsc.ca	37	1	109170821	109170821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM102B-135	NM_001010883	exon7	c.G589T	p.E197X	CCAGACGAACTTG	.	531	210	557	4	.	0	0	0	0	0
PRPF38B	55119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109242505	109242505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRPF38B-90	NM_018061	exon6	c.A1504G	p.R502G	CGTAGTAGAAGCA	.	156	43	188	1	.	0	0	0	0	0
AMIGO1	57463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110050171	110050171	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMIGO1-136	NM_020703	exon2	c.1364delG	p.G455fs	AGCTTGCCGTTTT	.	171	38	156	0	.	0	0	0	0	0
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110085990	110085990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR61-91	NM_031936	exon2	c.C346T	p.R116C	GCCTGCCGCCTCT	.	97	49	99	0	.	0	0	0	0	0
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110148630	110148630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNAT2-227	NM_005272	exon6	c.A682T	p.S228C	AGGCACTGAGGGC	.	269	57	264	1	.	0	0	0	0	0
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110766353	110766353	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNC4-154	NM_001039574	exon2	c.C1446A	p.A482A	CCTGGCCATGGCC	.	128	25	159	0	.	0	0	0	0	0
FAM19A3	284467	ucsc.edu;bcgsc.ca	37	1	113266683	113266683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM19A3-90	NM_182759	exon4	c.C314A	p.P105Q	GCCTGCCGGGGGA	.	235	112	238	3	.	0	0	0	0	0
VANGL1	81839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116206308	116206308	+	Silent	SNP	G	G	T	rs186509771	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VANGL1-226	NM_001172412	exon4	c.G231T	p.T77T	CACCACGGCCATC	.	124	33	133	0	G|0.999;A|0.000	0	0	0	0	0
ZNF697	90874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120165428	120165428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF697-23	NM_001080470	exon3	c.G1538T	p.R513L	TGGATGCGGCGGT	.	174	81	123	1	.	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	11	7	0	0	G|0.680;C|0.320	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	11	11	1	0	G|0.500;A|0.500	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144852481	144852481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon44	c.C7018A	p.L2340M	ATGGCAGAGCCCT	.	102	38	44	0	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144854656	144854656	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon42	c.G6814T	p.G2272X	ATTCTCCCTGGAT	.	225	29	155	0	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144865885	144865885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon35	c.C5695G	p.Q1899E	AGAGCTGAGGTAT	.	221	15	196	0	.	0	0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001039703	exon27	c.A3493T	p.I1165F	GCAGGAATTAAAA	.	98	16	79	1	A|0.625;T|0.375	0	0	0	0	0
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145533058	145533058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA10-231	NM_003637	exon11	c.G1153A	p.G385R	CAGGATGGGATTC	.	74	25	44	0	.	0	0	0	0	0
ITGA10	8515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145533059	145533059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA10-231	NM_003637	exon11	c.G1154T	p.G385V	AGGATGGGATTCT	.	76	25	46	1	.	0	0	0	0	0
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380254	147380254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GJA8-138	NM_005267	exon2	c.C172T	p.Q58X	ACCCAGCAGCCTG	.	270	75	118	0	.	0	0	0	0	0
PSMD4	5710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151236481	151236481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSMD4-90	NM_002810	exon3	c.T259C	p.C87R	ACCTTCTGCACGG	.	339	93	201	1	.	0	0	0	0	0
POGZ	23126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151377850	151377850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGZ-93	NM_015100	exon19	c.C3661G	p.R1221G	TGCTGCGCTGGCA	.	176	29	178	1	.	0	0	0	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151402135	151402135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGZ-93	NM_015100	exon5	c.G512C	p.G171A	ACAATCCCAACCT	.	152	31	71	0	.	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	13	8	0	0	T|0.073;G|0.921	0	0	0	0	0
TCHH	7062	hgsc.bcm.edu	37	1	152084432	152084432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCHH-72	NM_007113	exon3	c.C1261G	p.R421G	GCTCGCGCCTCAG	.	56	7	2	0	.	0	0	0	0	0
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152129433	152129433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPTN-68	NM_001122965	exon3	c.C142T	p.P48S	CATTTGGTCTCTG	.	107	27	67	0	.	0	0	0	0	0
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152188311	152188311	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HRNR-93	NM_001009931	exon3	c.C5794T	p.Q1932X	AAGACTGACGGGA	.	1978	183	1106	2	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152276700	152276700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G10662T	p.R3554S	AGACCACCTCTCA	.	403	51	225	0	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152280069	152280069	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.C7293A	p.T2431T	GGTCCCGGTCCGT	.	604	308	331	1	.	0	0	0	0	0
FLG	2312	bcgsc.ca	37	1	152281563	152281563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G5799T	p.R1933S	AGACCACCTCTCA	.	525	64	335	2	.	0	0	0	0	0
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152283067	152283067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G4295T	p.G1432V	CTTTCCCCTGACT	.	442	116	236	1	.	0	0	0	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152323875	152323875	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C6387A	p.A2129A	AGATCTGGCTTGG	.	516	218	341	1	.	0	0	0	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152326364	152326364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.T3898A	p.Y1300N	TTGGGTAGTGAGA	.	715	182	401	1	.	0	0	0	0	0
FLG2	388698	ucsc.edu;bcgsc.ca	37	1	152326656	152326656	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C3606A	p.S1202S	TCCAGTGGACTGA	.	275	125	194	2	.	0	0	0	0	0
FLG2	388698	bcgsc.ca	37	1	152327047	152327047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.3215delG	p.R1072fs	GACTGACGTGATC	.	533	197	322	1	.	0	0	0	0	0
FLG2	388698	hgsc.bcm.edu	37	1	152327047	152327048	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.3214_3215del	p.1072_1072del	GACTGACGTGATC	.	533	0	322	0	.	0	0	0	0	0
FLG2	388698	bcgsc.ca	37	1	152327048	152327048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C3214A	p.R1072S	ACTGACGTGATCT	.	529	210	318	2	.	0	0	0	0	0
FLG2	388698	broad.mit.edu;bcgsc.ca	37	1	152328724	152328724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.G1538A	p.G513E	GATTGTCCTGAGA	.	423	41	273	1	.	0	0	0	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152328752	152328752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.G1510T	p.G504C	CAAAGCCAGAGGA	.	409	32	259	0	.	0	0	0	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152329711	152329711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C551T	p.S184F	CAGCTGGACCTGT	.	190	43	146	0	.	0	0	0	0	0
SPRR2D	6703	broad.mit.edu;mdanderson.org	37	1	153012806	153012806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPRR2D-68	NM_006945	exon2	c.A17T	p.Q6L	CACTGCTGCTGTT	.	73	33	34	1	.	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233804	153233804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOR-90	NM_000427	exon2	c.G379T	p.G127C	GGCTCCGGCTGCT	.	8	5	0	0	.	0	0	0	0	0
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153303417	153303417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP4-94	NM_020393	exon9	c.A948G	p.I316M	GGGTGGTATACCT	.	193	20	120	0	.	0	0	0	0	0
FAM189B	10712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155217919	155217919	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM189B-154	NM_006589	exon11	c.G1755T	p.R585R	CAGGCCCCGACCT	.	273	141	158	1	.	0	0	0	0	0
MEX3A	92312	broad.mit.edu	37	1	156046986	156046986	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEX3A-158	NM_001093725	exon2	c.T942A	p.D314E	GCGGCTATCGATT	.	144	15	47	1	.	0	0	0	0	0
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255405	156255405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM79-90	NM_032323	exon2	c.G388T	p.V130L	GCCTTCGTGCCTA	.	299	35	163	0	.	0	0	0	0	0
TSACC	128229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156316635	156316635	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_144627	exon4	c.C240T	p.A80A	GCTCGCCCAACAA	.	315	89	175	0	.	0	0	0	0	0
SH2D2A	9047	ucsc.edu;bcgsc.ca	37	1	156779504	156779504	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2D2A-90	NM_001161441	exon6	c.A693G	p.K231K	CCCCTGTTTGATG	.	136	37	93	2	.	0	0	0	0	0
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157559043	157559043	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL4-229	NM_031282	exon3	c.G258A	p.Q86Q	CCGGGCCTGGCAT	.	280	140	165	0	.	0	0	0	0	0
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804410	157804410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD5L-91	NM_005894	exon4	c.C505A	p.L169I	CCCGGAGGCTCCA	.	122	30	101	0	.	0	0	0	0	0
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325660	158325660	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD1E-93	NM_001042585	exon4	c.T669A	p.P223P	TGGCCCTGGCCGT	.	216	55	104	1	.	0	0	0	0	0
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158368349	158368349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.G908T	p.R303I	AGAACTCTTTTCA	.	153	16	85	0	.	0	0	0	0	0
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158369178	158369178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.C79A	p.L27M	AAAGCAGCAGCTG	.	105	60	67	0	.	0	0	0	0	0
OR10K2	391107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158390612	158390612	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K2-69	NM_001004476	exon1	c.C45G	p.L15L	GAAGCCGAGGAAG	.	184	53	114	0	.	0	0	0	0	0
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158435408	158435408	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K1-69	NM_001004473	exon1	c.C57G	p.S19S	CTCATCCCTGGCC	.	282	75	197	0	.	0	0	0	0	0
OR10X1	128367	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549327	158549327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10X1-69	NM_001004477	exon1	c.G363T	p.L121F	AAGTCCCAAGAAG	.	638	81	411	2	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158589090	158589090	+	Missense_Mutation	SNP	C	C	A	rs202169454	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon45	c.G6452T	p.R2151I	ACCTGTCTTGCCT	.	414	43	300	0	C|0.999;T|0.001	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158590083	158590083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon44	c.C6294A	p.D2098E	TTTAAAGTCTGCT	.	255	35	170	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158592778	158592778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon43	c.C6115G	p.Q2039E	CCTTCTGTAGAGG	.	121	27	88	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158606464	158606464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon37	c.G5277T	p.E1759D	CTCCCCCTCTAGG	.	112	29	87	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158653268	158653268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon3	c.C283A	p.Q95K	GGGATTGATGCTT	.	155	60	112	0	.	0	0	0	0	0
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158670301	158670301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6K2-69	NM_001005279	exon1	c.G142T	p.V48L	GGACCACTGTGAT	.	243	75	168	0	.	0	0	0	0	0
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158735697	158735697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N1-69	NM_001005185	exon1	c.A776G	p.Y259C	TGCACATACATGG	.	368	178	213	1	.	0	0	0	0	0
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747067	158747067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N2-68	NM_001005278	exon1	c.A359T	p.Y120F	CTATCATAGGCCA	.	380	54	293	0	.	0	0	0	0	0
CADM3	57863	hgsc.bcm.edu	37	1	159141616	159141616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADM3-92	NM_021189	exon1	c.C61A	p.P21T	TGGGCGCCCGGCG	.	72	11	12	0	.	0	0	0	0	0
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175764	159175764	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DARC-659	NM_001122951	exon1	c.C541T	p.L181L	GCTGCCCTACTGA	.	184	37	120	0	.	0	0	0	0	0
FCER1A	2205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159273889	159273889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCER1A-524	NM_002001	exon4	c.248delC	p.A83fs	TGAATGCCAAATT	.	207	102	175	0	.	0	0	0	0	0
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159558001	159558001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APCS-154	NM_001639	exon2	c.T175C	p.Y59H	CGAGCCTATAGTG	.	87	16	41	0	.	0	0	0	0	0
FCRL6	343413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159779392	159779392	+	Missense_Mutation	SNP	C	C	G	rs146386650	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL6-93	NM_001004310	exon5	c.C805G	p.Q269E	TCAGAACAGGATG	.	220	58	140	0	C|1.000;T|0.000	0	0	0	0	0
SLAMF9	89886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159922196	159922196	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLAMF9-91	NM_033438	exon3	c.520delG	p.D174fs	TGCTATCCCCCCG	.	203	46	106	0	.	0	0	0	0	0
IGSF8	93185	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160063008	160063008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF8-90	NM_052868	exon4	c.G1018T	p.A340S	AGTATGCAGCATG	.	318	37	184	1	.	0	0	0	0	0
ATP1A4	480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160124894	160124894	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP1A4-94	NM_144699	exon3	c.C267T	p.T89T	TGTTACCCCACCC	.	175	23	88	1	.	0	0	0	0	0
ITLN2	142683	bcgsc.ca	37	1	160920966	160920966	+	Missense_Mutation	SNP	C	C	T	rs6680969	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITLN2-91	NM_080878	exon4	c.G308A	p.R103H	TTCCCACGCATGT	.	498	13	280	0	C|0.495;T|0.505	0	0	0	0	0
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160970019	160970019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F11R-92	NM_016946	exon5	c.G508T	p.G170W	CTATCCCATCTTT	.	173	69	85	0	.	0	0	0	0	0
HSPA6	3310	ucsc.edu;bcgsc.ca	37	1	161496045	161496045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA6-226	NM_002155	exon1	c.G1597T	p.A533S	GATGAGGCCCAGA	.	966	364	642	4	.	0	0	0	0	0
FCGR3A	2214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161519625	161519625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCGR3A-91	NM_001127592	exon1	c.G10T	p.G4W	CAGCCCCTCCACC	.	302	171	192	0	.	0	0	0	0	0
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161967901	161967901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon6	c.A1188T	p.Q396H	GGTTGTTTGGAGT	.	204	32	94	0	.	0	0	0	0	0
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161987209	161987209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon3	c.G527T	p.R176L	TCCACTCGCCCCA	.	124	36	92	0	.	0	0	0	0	0
OLFML2B	25903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161989832	161989832	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon2	c.G315T	p.V105V	GGTTTCCACGGTA	.	172	97	146	2	.	0	0	0	0	0
NOS1AP	9722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162313643	162313643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOS1AP-228	NM_014697	exon6	c.G472T	p.V158F	AGAATCGTTCGGA	.	434	90	301	0	.	0	0	0	0	0
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	162345173	162345173	+	Missense_Mutation	SNP	G	G	C	rs139605225	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf111-69	NM_182581	exon2	c.C124G	p.P42A	CAGTGGGTACTGC	.	374	28	204	0	G|0.999;T|0.000	0	0	0	0	0
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	162762484	162762484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon2	c.C71T	p.A24V	TGCTGGCGGAAGA	.	173	22	132	0	.	0	0	0	0	0
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162766425	162766425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon3	c.C290T	p.P97L	CTAATCCACAACT	.	145	19	121	0	.	0	0	0	0	0
LMX1A	4009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	165322434	165322434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LMX1A-92	NM_001174069	exon3	c.C142T	p.L48L	GCCGCAGCAGAAA	.	169	68	87	0	.	0	0	0	0	0
LRRC52	440699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165513609	165513609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC52-91	NM_001005214	exon1	c.T76G	p.C26G	TCAAAGTGTCCAA	.	299	91	191	3	.	0	0	0	0	0
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166039894	166039894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM78B-91	NM_001017961	exon2	c.C370A	p.L124M	CAACCAGGGTCAC	.	163	25	84	0	.	0	0	0	0	0
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166816741	166816741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGK-91	NM_017542	exon4	c.C270A	p.F90L	CCCATTCCCTAAG	.	147	18	95	0	.	0	0	0	0	0
ILDR2	387597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166891891	166891891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ILDR2-91	NM_199351	exon8	c.G1150T	p.A384S	GGCTTGCCCCACT	.	123	58	99	1	.	0	0	0	0	0
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166962004	166962004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAEL-91	NM_032858	exon4	c.C407A	p.P136H	TCCTCCCTTGTGA	.	41	5	25	0	.	0	0	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167086597	167086597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon3	c.G238T	p.E80X	GACGCAGAGTGTC	.	202	113	138	0	.	0	0	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096341	167096341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C1973A	p.P658H	GCATTCCCCTGTC	.	416	64	255	0	.	0	0	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096491	167096491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C2123A	p.P708H	CCCTGCCTAACCT	.	274	119	161	0	.	0	0	0	0	0
CD247	919	broad.mit.edu	37	1	167487681	167487681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD247-90	NM_198053	exon1	c.A22C	p.T8P	CCGCGGTGAAAAG	.	92	9	49	1	.	0	0	0	0	0
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167659302	167659302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RCSD1-517	NM_052862	exon4	c.C215A	p.A72E	CCAATGCGAGCCA	.	256	31	157	0	.	0	0	0	0	0
XCL1	6375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168550362	168550362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XCL1-90	NM_002995	exon3	c.C249A	p.S83R	CAGGAGCATGGAC	.	477	173	326	0	.	0	0	0	0	0
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170015874	170015874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIFAP3-91	NM_014970	exon3	c.C298T	p.R100C	AATCACGGCGGTT	.	278	58	161	0	.	0	0	0	0	0
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	170633519	170633519	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRRX1-659	NM_006902	exon1	c.G160C	p.D54H	CAGGCGGATGAGA	.	616	72	177	0	.	0	0	0	0	0
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046899	175046899	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon2	c.G345T	p.L115L	GAAGCTGGAGGAA	.	459	126	311	0	.	0	0	0	0	0
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175086185	175086185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon10	c.T2230A	p.S744T	TACACCTCTGCCA	.	421	54	291	1	.	0	0	0	0	0
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175092664	175092664	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon12	c.A2779T	p.R927W	GAGACCAGGGAGG	.	444	100	309	0	.	0	0	0	0	0
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175116153	175116153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon19	c.G3846T	p.E1282D	CAGGGAGCCTGTC	.	338	99	193	1	.	0	0	0	0	0
TNR	7143	ucsc.edu;bcgsc.ca	37	1	175348815	175348815	+	Silent	SNP	G	G	T	rs139768853	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon9	c.C1836A	p.L612L	CCACTCGAGGTCA	.	269	134	193	2	G|0.998;A|0.002	0	0	0	0	0
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175362928	175362928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon6	c.C1344A	p.S448R	AATGAAGCTGATT	.	227	72	149	1	.	0	0	0	0	0
TNR	7143	ucsc.edu;bcgsc.ca	37	1	175372387	175372387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon4	c.G865T	p.G289C	CCTCACCAACGTA	.	377	145	282	2	.	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176526124	176526124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon2	c.G666T	p.W222C	ACCTTGGCCCAAG	.	215	62	146	0	.	0	0	0	0	0
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176564188	176564188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon3	c.G1448T	p.G483V	TCCAGGGCTTTGA	.	196	80	126	1	.	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	176769205	176769205	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon21	c.G5139T	p.V1713V	CATTGTGTGCACT	.	108	10	65	0	.	0	0	0	0	0
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176845691	176845691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_207108	exon21	c.G3445T	p.D1149Y	CATCATCCACCAC	.	296	151	209	1	.	0	0	0	0	0
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176863813	176863813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_207108	exon17	c.C2825A	p.S942Y	GGGCAGGACGAGG	.	137	40	92	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	15	15	0	0	T|0.229;C|0.771	0	0	0	0	0
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179620086	179620086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD5-94	NM_001199091	exon12	c.G1885A	p.D629N	TATGTAGATGGAA	.	340	91	165	0	.	0	0	0	0	0
LHX4	89884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180240552	180240552	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX4-91	NM_033343	exon4	c.C489A	p.T163T	GACCACCATCACA	.	554	134	345	2	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181702776	181702776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_000721	exon21	c.C3152A	p.P1051H	GCGAGCCTGACCT	.	973	256	531	1	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767816	181767816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6788A	p.S2263Y	GCCGTTCCAACAC	.	217	21	117	0	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	181767817	181767817	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6789A	p.S2263S	CCGTTCCAACACC	.	217	21	114	0	.	0	0	0	0	0
ZNF648	127665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182027141	182027141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF648-91	NM_001009992	exon2	c.C5A	p.A2E	ACTTGTGCCATGA	.	280	100	164	1	.	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182500036	182500036	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon13	c.2355delG	p.Q785fs	CCTACAGGAATCC	.	97	45	53	0	.	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu	37	1	182500036	182500037	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon13	c.2355_2356del	p.785_786del	CCTACAGGAATCC	.	97	0	53	0	.	0	0	0	0	0
RGSL1	353299	bcgsc.ca	37	1	182500037	182500037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon13	c.G2356A	p.E786K	CTACAGGAATCCC	.	95	45	51	0	.	0	0	0	0	0
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	183195953	183195953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMC2-93	NM_005562	exon9	c.G1187T	p.C396F	AGGATTGTGCTTC	.	217	17	163	0	.	0	0	0	0	0
COLGALT2	23127	bcgsc.ca	37	1	183923927	183923927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_015101	exon7	c.C998A	p.P333H	TATTTAGGGACAA	.	805	191	503	5	.	0	0	0	0	0
TRMT1L	81627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185112534	185112534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRMT1L-92	NM_030934	exon7	c.G814A	p.E272K	GTTCCTCAGCCAA	.	296	42	198	2	.	0	0	0	0	0
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186880385	186880385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4A-721	NM_024420	exon7	c.G422T	p.C141F	GCTCATGCCCAGA	.	186	63	116	0	.	0	0	0	0	0
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	190067548	190067548	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1901delA	p.K634fs	TTGGACTTGATGC	.	161	87	134	0	.	0	0	0	0	0
FAM5C	339479	hgsc.bcm.edu	37	1	190067549	190067550	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1899_1900del	p.633_634del	TGGACTTGATGCG	.	158	0	131	0	.	0	0	0	0	0
FAM5C	339479	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	190067550	190067550	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.C1899T	p.I633I	GGACTTGATGCGA	.	155	88	130	0	.	0	0	0	0	0
RGS18	64407	bcgsc.ca	37	1	192127869	192127869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon1	c.C102A	p.S34R	AACAAGCAAAGAA	.	271	105	234	4	.	0	0	0	0	0
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192127877	192127877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon1	c.C110A	p.A37D	AAGAAGCCAAAAT	.	259	60	230	0	.	0	0	0	0	0
RGS18	64407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192153625	192153625	+	Missense_Mutation	SNP	C	C	A	rs200020460	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon5	c.C649A	p.R217S	CGATCACGCTCAT	.	250	90	243	1	C|0.999;T|0.001	0	0	0	0	0
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192548286	192548286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS1-226	NM_002922	exon5	c.C464A	p.T155N	TCCGCACTCGAGA	.	238	59	201	0	.	0	0	0	0	0
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196749007	196749007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR3-90	NM_021023	exon3	c.G334C	p.V112L	ACAGAAGTTGCCT	.	618	300	414	0	.	0	0	0	0	0
CFHR2	3080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196920020	196920020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR2-93	NM_005666	exon3	c.G292C	p.E98Q	CATTCTGAATCTT	.	204	17	155	0	.	0	0	0	0	0
CFHR5	81494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196964954	196964954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR5-154	NM_030787	exon5	c.C715G	p.P239A	TGCAATCCTAATT	.	289	142	200	0	.	0	0	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197059995	197059995	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_018136	exon23	c.A9621T	p.G3207G	AATGATTCCACTA	.	62	23	45	0	.	0	0	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197113117	197113117	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_001206846	exon2	c.A411T	p.L137L	ATTTCCTAGTAAT	.	127	44	114	0	.	0	0	0	0	0
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200943940	200943940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_001252102	exon34	c.G4716T	p.W1572C	CACGTTCCAGACC	.	379	94	186	0	.	0	0	0	0	0
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200971454	200971454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_017596	exon9	c.G1237T	p.G413C	CAGCGCCATCCTC	.	193	53	132	0	.	0	0	0	0	0
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201047167	201047167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon11	c.G1459T	p.G487C	GCAGGCCCAGCCC	.	625	338	369	0	.	0	0	0	0	0
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201181975	201181975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFN1-71	NM_001164586	exon12	c.G7954T	p.G2652C	GCTTCCGGTTCTC	.	242	137	148	1	.	0	0	0	0	0
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202715062	202715062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KDM5B-273	NM_006618	exon16	c.G2247T	p.K749N	TCGAAGCTTCAAT	.	120	33	84	1	.	0	0	0	0	0
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202915739	202915739	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADIPOR1-90	NM_015999	exon5	c.259-1G>T	.	CCAGACCTAGAAC	.	367	68	217	1	.	0	0	0	0	0
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203028334	203028334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPFIA4-230	NM_015053	exon7	c.G918T	p.M306I	CAGTATGCAGGAG	.	811	294	468	0	.	0	0	0	0	0
BTG2	7832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203276418	203276418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTG2-651	NM_006763	exon2	c.C329T	p.S110F	AGGTGTCCTACCG	.	140	39	104	0	.	0	0	0	0	0
PRELP	5549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203452438	203452438	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRELP-516	NM_201348	exon2	c.C126A	p.P42P	CAGGCCCACACCC	.	245	107	140	1	.	0	0	0	0	0
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203452762	203452762	+	Silent	SNP	C	C	T	rs200569548		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRELP-516	NM_201348	exon2	c.C450T	p.P150P	ACTGCCCGGCCTG	.	316	106	202	0	C|0.999;T|0.000	0	0	0	0	0
LAX1	54900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203743202	203743202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAX1-514	NM_017773	exon5	c.C590A	p.P197H	ATGTCCCCACAGC	.	196	66	99	0	.	0	0	0	0	0
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203807096	203807096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZC3H11A-515	NM_014827	exon13	c.G877T	p.G293C	ATAGGCGGTGACA	.	246	115	190	0	.	0	0	0	0	0
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204937426	204937426	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001160332	exon9	c.C789A	p.T263T	GGGCACCGCGAGC	.	226	98	136	0	.	0	0	0	0	0
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204966446	204966446	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001005388	exon25	c.C2931A	p.V977V	CACCGTCGCCACA	.	477	166	338	1	.	0	0	0	0	0
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205039030	205039030	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN2-91	NM_005076	exon18	c.T2272A	p.W758R	ACTCACTGGCAGA	.	549	66	258	2	.	0	0	0	0	0
RASSF5	83593	hgsc.bcm.edu	37	1	206681002	206681002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASSF5-660	NM_182663	exon1	c.C67T	p.R23C	CCGCCGCGCTATC	.	88	15	2	0	.	0	0	0	0	0
FAIM3	9214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207087142	207087142	+	Missense_Mutation	SNP	C	C	A	rs200225589	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAIM3-90	NM_001193338	exon2	c.G335T	p.R112L	TTTCCCCGGTCTG	.	212	80	116	1	C|0.999;T|0.000	0	0	0	0	0
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207139094	207139094	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCAMR-91	NM_032029	exon4	c.G279T	p.S93S	GAGGGGCGAGGAA	.	235	85	168	0	.	0	0	0	0	0
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207649601	207649601	+	Silent	SNP	G	G	A	rs184057547		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CR2-232	NM_001006658	exon15	c.G2739A	p.P913P	ACCTCCGCCTAAG	.	274	43	177	1	G|0.999;A|0.000	0	0	0	0	0
CR1	1378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207753724	207753724	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CR1-93	NM_000651	exon30	c.C5076A	p.P1692P	CACACCCCAGGGA	.	285	72	160	1	.	0	0	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208202235	208202235	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA2-92	NM_025179	exon30	c.C5378G	p.S1793C	GAGGGGGAGTCCT	.	333	43	197	0	.	0	0	0	0	0
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209795997	209795997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_000228	exon18	c.A2585G	p.Q862R	TGAATCTGTGAGG	.	200	60	134	0	.	0	0	0	0	0
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209796407	209796407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_000228	exon17	c.G2476T	p.G826C	CCCCACCGGCCCT	.	425	208	280	1	.	0	0	0	0	0
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209936416	209936416	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP3-291	NM_025228	exon6	c.C555A	p.Y185X	CAGTTACGGAGTT	.	141	54	101	0	.	0	0	0	0	0
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209936707	209936707	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP3-291	NM_025228	exon7	c.577-1G>A	.	TCTCCAGGAAATC	.	226	67	147	1	.	0	0	0	0	0
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209964145	209964145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF6-92	NM_006147	exon7	c.T755C	p.F252S	CCATAGAAGAGTC	.	161	46	88	0	.	0	0	0	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210857441	210857441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_172362	exon11	c.G2152C	p.E718Q	GTTCTTCCTCTTC	.	55	9	31	0	.	0	0	0	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210971060	210971060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_172362	exon9	c.G1705T	p.V569L	GGTGCACGCAGAT	.	400	207	233	0	.	0	0	0	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211264025	211264025	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_002238	exon4	c.T318A	p.P106P	CCACACAGGTGTC	.	83	47	43	0	.	0	0	0	0	0
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212141280	212141280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INTS7-90	NM_001199812	exon15	c.A2054G	p.Y685C	TCTCCATATCGAG	.	60	24	23	0	.	0	0	0	0	0
INTS7	25896	broad.mit.edu;bcgsc.ca	37	1	212190255	212190255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INTS7-90	NM_001199812	exon4	c.C482G	p.A161G	GCAGCAGCAAAAA	.	209	19	130	1	.	0	0	0	0	0
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215408289	215408289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK2-90	NM_001017425	exon7	c.T1082A	p.I361N	CCTCCATCAAGCG	.	112	50	91	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215822060	215822060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon66	c.T14392C	p.F4798L	TAGTGAAGGCTTG	.	249	128	141	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215953376	215953376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon55	c.C10748A	p.A3583E	GTAGCTGCAACTA	.	168	22	121	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215963428	215963428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon51	c.C10155A	p.D3385E	AATCTTGTCAGAG	.	85	20	60	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216052284	216052284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon42	c.G8380T	p.V2794F	AAGCAACAATGGT	.	329	166	209	0	.	0	0	0	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216144042	216144042	+	Nonsense_Mutation	SNP	G	G	T	rs147615382	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon36	c.C6882A	p.Y2294X	AAATCCGTAAGCA	.	225	32	138	1	G|1.000;A|0.000	0	0	0	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216390770	216390770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon15	c.C3116A	p.A1039E	TGGCTTGCACTGG	.	268	82	220	1	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216498841	216498841	+	Silent	SNP	G	G	T	rs111033272		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon6	c.C949A	p.R317R	AGTACCGCTGTGC	.	175	76	113	0	.	0	0	0	0	0
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218607682	218607682	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFB2-710	NM_001135599	exon5	c.A730C	p.R244R	CCAGACAGGAACC	.	161	22	98	0	.	0	0	0	0	0
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220152840	220152840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon27	c.A3829C	p.T1277P	TTCGAGTTGTCAG	.	192	108	105	0	.	0	0	0	0	0
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220178699	220178699	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon16	c.G1954T	p.E652X	GCTCTTCATGCTG	.	49	20	21	0	.	0	0	0	0	0
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220247364	220247364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BPNT1-91	NM_006085	exon3	c.G170A	p.S57N	CATATGCTCATCT	.	159	34	95	0	.	0	0	0	0	0
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222705308	222705308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HHIPL2-69	NM_024746	exon6	c.G1723A	p.G575R	TGTTACCTGCTTC	.	145	49	77	0	.	0	0	0	0	0
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225267153	225267153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH14-23	NM_001373	exon18	c.G2669T	p.S890I	AGTTAAGTAAAAT	.	256	38	220	0	.	0	0	0	0	0
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227261686	227261686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC42BPA-549	NM_003607	exon19	c.G2614C	p.A872P	GTTTCGCAAAACG	.	56	17	48	0	.	0	0	0	0	0
PRSS38	339501	bcgsc.ca	37	1	228004947	228004947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS38-92	NM_183062	exon3	c.C349A	p.L117I	GTAGGCCTCGTAA	.	173	101	78	2	.	0	0	0	0	0
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228005027	228005027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS38-92	NM_183062	exon3	c.G429C	p.M143I	TGAGATGTACCAC	.	221	53	129	0	.	0	0	0	0	0
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228465520	228465520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon30	c.G8107A	p.A2703T	TTTGTAGCCGAAA	.	533	116	323	2	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228469788	228469788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon36	c.G9639T	p.Q3213H	CTTCCAGGCCACA	.	543	322	368	2	.	0	0	0	0	0
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228496916	228496916	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon59	c.G15727T	p.G5243X	GCTTTAGGAGGGG	.	365	98	232	1	.	0	0	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228506745	228506745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon65	c.G17163T	p.E5721D	AGAGGAGGACGGC	.	447	237	220	4	.	0	0	0	0	0
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230468646	230468646	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGBD5-93	NM_001258311	exon5	c.G1217A	p.W406X	TTGTACCAGCAGA	.	358	177	180	0	.	0	0	0	0	0
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231349591	231349591	+	Silent	SNP	C	C	A	rs200465476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM67-229	NM_001004342	exon9	c.C2154A	p.T718T	GGCCACCGTGGGC	.	666	345	383	0	C|0.998;T|0.002	0	0	0	0	0
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231885794	231885794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DISC1-91	NM_001164537	exon5	c.G1336C	p.A446P	GTCCAGGCTGCCT	.	276	74	158	0	.	0	0	0	0	0
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235357437	235357437	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4B-228	NM_016374	exon19	c.A2016C	p.T672T	TGGATTTGTCTGA	.	107	54	69	0	.	0	0	0	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235904873	235904873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon31	c.G8207C	p.C2736S	TCCTTACAAGACC	.	189	42	128	0	.	0	0	0	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235966313	235966313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon8	c.G3607C	p.E1203Q	CAGCTTCTTCTGA	.	69	8	45	0	.	0	0	0	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235972428	235972428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.G1690T	p.A564S	AGGAAGCCTGCTG	.	238	124	135	0	.	0	0	0	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235973763	235973763	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.C355G	p.Q119E	TTTCCTGAGTGGA	.	50	15	32	0	.	0	0	0	0	0
NID1	4811	broad.mit.edu;bcgsc.ca	37	1	236157101	236157101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID1-154	NM_002508	exon13	c.C2599G	p.R867G	TGGGTCGCTGTGG	.	325	149	96	3	.	0	0	0	0	0
ACTN2	88	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902766	236902766	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN2-95	NM_001103	exon10	c.G1041C	p.T347T	CAACACGCTGCAG	.	274	139	170	1	.	0	0	0	0	0
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902815	236902815	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN2-95	NM_001103	exon10	c.G1090C	p.E364Q	CCCTCCGAGGGCA	.	193	54	128	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237664056	237664056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon21	c.G2249T	p.R750I	TGTTAAGAACTGA	.	237	59	161	0	.	0	0	0	0	0
RYR2	6262	ucsc.edu;bcgsc.ca	37	1	237666655	237666655	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon22	c.T2463A	p.P821P	TGCTCCTTGTTAT	.	188	100	119	2	.	0	0	0	0	0
RYR2	6262	ucsc.edu;bcgsc.ca	37	1	237801682	237801682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon45	c.G6818T	p.G2273V	GTTGTGGACTGCA	.	270	81	166	3	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237811775	237811775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon49	c.G7374T	p.A2458A	GTCTGCGGGGTTT	.	269	33	179	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237870480	237870480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon68	c.A9812T	p.E3271V	ACTCAGAGCACAT	.	271	72	173	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237890397	237890397	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon76	c.C10736G	p.P3579R	AACATCCTCAGAG	.	119	51	74	0	.	0	0	0	0	0
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237947789	237947789	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon90	c.C12777T	p.L4259L	AATGCTCAGTCTG	.	157	42	128	1	.	0	0	0	0	0
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237947964	237947964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon90	c.C12952A	p.L4318I	GGAAGCCTCGTCG	.	182	93	104	0	.	0	0	0	0	0
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238048794	238048794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon8	c.C1057G	p.L353V	TGTGAAGGATGGA	.	387	57	262	0	.	0	0	0	0	0
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238049161	238049161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon7	c.G865T	p.V289L	TACTTACTGAGTA	.	182	29	134	0	.	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	240371788	240371788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN2-145	NM_020066	exon5	c.C3676A	p.P1226T	CCACTCCCTCCAC	.	214	71	142	0	.	0	0	0	0	0
KMO	8564	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241725612	241725612	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KMO-92	NM_003679	exon7	c.A595T	p.I199F	TTGACTATTCCAC	.	422	155	229	1	.	0	0	0	0	0
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241846794	241846794	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR64-91	NM_144625	exon6	c.T600C	p.N200N	GGAAAATTATTTT	.	98	21	82	0	.	0	0	0	0	0
CEP170	9859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	243349332	243349332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP170-93	NM_014812	exon10	c.G1315T	p.G439W	ATTTCCCATGTGG	.	305	116	218	0	.	0	0	0	0	0
CEP170	9859	broad.mit.edu;bcgsc.ca	37	1	243354352	243354352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP170-93	NM_001042405	exon8	c.G1076T	p.S359I	ACATCACTTTTAA	.	228	53	202	1	.	0	0	0	0	0
KIF26B	55083	ucsc.edu;bcgsc.ca	37	1	245583020	245583020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon4	c.C1139T	p.T380I	CAGGCACATCGGT	.	496	119	282	3	.	0	0	0	0	0
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	245766029	245766029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon6	c.C1501G	p.Q501E	GGCAACCAGGTTC	.	315	29	164	0	.	0	0	0	0	0
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	245849362	245849362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon12	c.C3077A	p.P1026Q	GCGTCCCGGGCAG	.	181	77	12	0	.	0	0	0	0	0
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245849536	245849536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon12	c.C3251A	p.S1084Y	CCAGCTCTCCTTC	.	366	208	171	1	.	0	0	0	0	0
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247694914	247694914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2C3-70	NM_198074	exon2	c.C900G	p.S300R	GAGGGCGCTCTTC	.	274	83	121	0	.	0	0	0	0	0
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247769018	247769018	+	Missense_Mutation	SNP	C	C	A	rs200831993		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2G3-68	NM_001001914	exon1	c.C131A	p.T44N	ACTTCACCATAAT	.	208	54	123	2	C|0.999;A|0.001	0	0	0	0	0
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247769252	247769252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2G3-68	NM_001001914	exon1	c.G365A	p.R122Q	TGGATCGGTACAT	.	379	47	222	1	.	0	0	0	0	0
OR11L1	391189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248004443	248004443	+	Nonsense_Mutation	SNP	G	G	T	rs201677584	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11L1-71	NM_001001959	exon1	c.C756A	p.Y252X	GGTCCCGTAGTAG	.	332	132	188	0	G|0.999;A|0.000	0	0	0	0	0
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248039228	248039228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM58-96	NM_015431	exon6	c.G898T	p.A300S	GCCACGGCGCACC	.	127	12	59	0	.	0	0	0	0	0
OR2L8	391190	broad.mit.edu;bcgsc.ca	37	1	248112694	248112694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L8-70	NM_001001963	exon1	c.G535T	p.D179Y	TTCTGTGATGTCC	.	209	48	112	2	.	0	0	0	0	0
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248113085	248113085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L8-70	NM_001001963	exon1	c.C926A	p.S309Y	TCTGCTCTGTGAA	.	41	24	29	0	.	0	0	0	0	0
OR2L5	81466	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	248185406	248185406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001258284	exon1	c.C157G	p.H53D	GACACCCATCTCC	.	251	84	180	0	.	0	0	0	0	0
OR2L2	26246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L2-70	NM_001004686	exon1	c.G119T	p.G40V	TAATTGGAAATCT	.	259	34	187	0	.	0	0	0	0	0
OR2L3	391192	broad.mit.edu	37	1	248224518	248224518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L3-68	NM_001004687	exon1	c.G535T	p.D179Y	TTCTGTGATGTCC	.	531	37	264	2	.	0	0	0	0	0
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263017	248263017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C340A	p.L114M	TTACTCCTGACCT	.	174	29	91	0	.	0	0	0	0	0
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248263390	248263390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.713delC	p.T238fs	CCTTCACCACCAT	.	154	83	98	0	.	0	0	0	0	0
OR2L13	284521	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263394	248263394	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C717G	p.T239T	CACCACCATTTCA	.	157	38	95	0	.	0	0	0	0	0
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248308676	248308676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M5-71	NM_001004690	exon1	c.C227A	p.S76Y	TCTGCTCTACCGT	.	463	57	285	0	.	0	0	0	0	0
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248343672	248343672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M2-72	NM_001004688	exon1	c.C385G	p.P129A	TGCCACCCTCTAA	.	233	46	174	1	.	0	0	0	0	0
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248366445	248366445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M3-70	NM_001004689	exon1	c.T76A	p.F26I	CACACCTTCCTCT	.	615	160	362	1	.	0	0	0	0	0
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248366542	248366542	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M3-70	NM_001004689	exon1	c.C173G	p.P58R	ACACCCCCATGTA	.	494	146	296	1	.	0	0	0	0	0
OR2M4	26245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248402254	248402254	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M4-113	NM_017504	exon1	c.C24T	p.F8F	GACCTTCAACTCC	.	305	153	167	0	.	0	0	0	0	0
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248458292	248458292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T12-71	NM_001004692	exon1	c.A589T	p.M197L	TGTACATGGCGTT	.	1588	190	807	0	.	0	0	0	0	0
OR14C36	127066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248512583	248512583	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR14C36-48	NM_001001918	exon1	c.C507A	p.S169S	TCGGTCCAACGTT	.	119	57	85	0	.	0	0	0	0	0
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525752	248525752	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T4-68	NM_001004696	exon1	c.C870A	p.T290T	CTACACCTACATG	.	1467	580	914	3	.	0	0	0	0	0
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551108	248551108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T6-71	NM_001005471	exon1	c.T199A	p.S67T	CACCTCTCCGTCA	.	345	186	219	0	.	0	0	0	0	0
OR2T6	254879	ucsc.edu;bcgsc.ca	37	1	248551631	248551631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T6-71	NM_001005471	exon1	c.G722T	p.C241F	CCACCTGCTCTTC	.	324	81	207	2	.	0	0	0	0	0
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569879	248569879	+	Missense_Mutation	SNP	T	T	C	rs138350213	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T1-69	NM_030904	exon1	c.T584C	p.I195T	TGATTATAGCAGG	.	248	107	139	0	T|0.999;C|0.001	0	0	0	0	0
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	1	248616364	248616364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T2-23	NM_001004136	exon1	c.A266T	p.K89M	TGTCCAAGGACAA	.	2474	164	1715	2	.	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756309	248756309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C761T	p.A254V	ATAGCAGCTCCAT	.	256	39	202	0	.	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756494	248756494	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C576A	p.T192T	AAGTGAGGTGTCT	.	392	246	343	1	.	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248756527	248756527	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C543A	p.V181V	AGCAGGGACCTCA	.	441	74	375	0	.	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756878	248756878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C192A	p.N64K	GAGCTGGTTTATA	.	281	153	266	1	.	0	0	0	0	0
OR2T11	127077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248790268	248790268	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T11-69	NM_001001964	exon1	c.C162A	p.T54T	CATGGGGGTGTGG	.	240	115	158	1	.	0	0	0	0	0
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248790331	248790331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T11-69	NM_001001964	exon1	c.G99T	p.L33F	GGCCCCCAAGAAA	.	196	27	135	0	.	0	0	0	0	0
AKR1C4	1109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5254964	5254964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKR1C4-91	NM_001818	exon7	c.C688A	p.P230T	GTGGACCCAAACT	.	224	81	169	0	.	0	0	0	0	0
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6521128	6521128	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKCQ-1380	NM_006257	exon13	c.1180-1G>T	.	GAAGACCTAGAAG	.	138	45	114	0	.	0	0	0	0	0
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7621911	7621911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH5-92	NM_001001851	exon9	c.C1225G	p.P409A	CCGTGGGCTTCCC	.	139	50	83	1	.	0	0	0	0	0
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	7659227	7659227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH5-92	NM_001001851	exon6	c.671delC	p.P224fs	GTAGATGGGGGAG	.	50	22	56	0	.	0	0	0	0	0
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7763735	7763735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH2-93	NM_002216	exon8	c.C862A	p.L288M	GGTGAACTGGAGG	.	219	76	191	0	.	0	0	0	0	0
ATP5C1	509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7841035	7841035	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP5C1-90	NM_005174	exon4	c.G306C	p.L102L	AGGACTGTGTGGT	.	306	85	306	0	.	0	0	0	0	0
UPF2	26019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12046670	12046670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UPF2-515	NM_080599	exon5	c.G1363T	p.E455X	CACCTTCCAAGTC	.	75	35	68	1	.	0	0	0	0	0
UCMA	221044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13275734	13275734	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCMA-90	NM_145314	exon3	c.124+1G>T	.	CACTCACCTTCAC	.	84	30	67	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16949626	16949626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon49	c.G7586A	p.S2529N	TTCACACTACTAC	.	190	71	163	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16970184	16970184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon41	c.G6243C	p.R2081S	GCCTGCCCTGGTT	.	59	32	65	0	.	0	0	0	0	0
VIM	7431	broad.mit.edu;bcgsc.ca	37	10	17275787	17275787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VIM-291	NM_003380	exon5	c.G739C	p.A247P	CTGCAGGCTCAGA	.	223	82	201	3	.	0	0	0	0	0
PTPLA	9200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17636354	17636354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPLA-226	NM_014241	exon6	c.G634A	p.V212I	CTCCAACAGGATA	.	66	21	66	1	.	0	0	0	0	0
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	18138668	18138668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MRC1-68	NM_002438	exon7	c.C1224G	p.D408E	ATTGGACTTTATT	.	311	235	306	1	.	0	0	0	0	0
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18254445	18254445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC39A12-154	NM_152725	exon4	c.G577T	p.G193X	AAATCTGGAATAG	.	49	12	62	0	.	0	0	0	0	0
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23408289	23408289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSRB2-90	NM_012228	exon4	c.G353A	p.G118D	CTCATGGTACGTC	.	153	54	116	0	.	0	0	0	0	0
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25701255	25701255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon4	c.G1188T	p.R396S	TTGCAGGGAGGGC	.	242	86	206	0	.	0	0	0	0	0
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25839904	25839904	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon6	c.1405-1G>T	.	CCCACAGGTTGTT	.	160	52	118	0	.	0	0	0	0	0
GPR158	57512	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25861668	25861668	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon7	c.G1605A	p.L535L	ACTCTTGGTAGTG	.	233	71	203	2	.	0	0	0	0	0
GPR158	57512	ucsc.edu;bcgsc.ca	37	10	25861669	25861669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon7	c.G1606T	p.V536L	CTCTTGGTAGTGT	.	234	72	203	2	.	0	0	0	0	0
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25885596	25885596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon10	c.C2023G	p.R675G	AACCCACGAGATG	.	125	41	141	0	.	0	0	0	0	0
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25887095	25887095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon11	c.C2540A	p.S847Y	AAAATTCCACACT	.	152	47	169	1	.	0	0	0	0	0
MYO3A	53904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26459432	26459432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO3A-1007	NM_017433	exon29	c.A3362T	p.Q1121L	CTGATCAGGAATT	.	250	64	273	0	.	0	0	0	0	0
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31750115	31750115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZEB1-518	NM_001174093	exon2	c.G208T	p.G70W	TTACCAGGGAGGA	.	279	103	240	0	.	0	0	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37422904	37422904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon5	c.G510T	p.Q170H	TCTTCAGCAAAAT	.	152	66	157	0	.	0	0	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508068	37508068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon34	c.A3260G	p.N1087S	AAAAGAATGCTGA	.	252	49	240	0	.	0	0	0	0	0
ZNF33A	7581	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38305844	38305844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF33A-93	NM_006954	exon3	c.G55T	p.V19L	GTGACTGTGGGCT	.	319	107	286	1	.	0	0	0	0	0
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43609034	43609034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RET-4507	NM_020630	exon10	c.G1790T	p.G597V	AGCCTGGGGAGCC	.	33	14	21	0	.	0	0	0	0	0
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43692433	43692433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGEF1A-227	NM_145313	exon11	c.A1339T	p.S447C	CCTCGCTGTAGAT	.	150	62	154	0	.	0	0	0	0	0
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	47087507	47087507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPYR1-524	NM_005972	exon3	c.C724A	p.Q242K	CGCCTGCAGAGGC	.	131	28	121	0	.	0	0	0	0	0
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	49658873	49658873	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP22-228	NM_001256024	exon9	c.G1347C	p.R449R	CGGCTGCCGGAAG	.	186	68	106	0	.	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49918000	49918000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon2	c.C223A	p.L75I	CTCCCCCTATTCC	.	45	16	57	0	.	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49934093	49934093	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon6	c.C759G	p.L253L	GAACCTCAGCATC	.	170	31	119	0	.	0	0	0	0	0
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49951243	49951243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon12	c.G2109T	p.R703S	CTTCAGGAGGAAT	.	140	57	178	1	.	0	0	0	0	0
WDFY4	57705	bcgsc.ca	37	10	49968459	49968459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon13	c.C2527T	p.R843W	CTGCCTCGGTTGT	.	167	60	154	3	.	0	0	0	0	0
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50098737	50098737	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon44	c.G7281A	p.T2427T	TCCCACGGGTGAT	.	292	95	273	1	.	0	0	0	0	0
FAM170B	170370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50341914	50341914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001164484	exon1	c.G50C	p.G17A	GTGGTCCCATCGG	.	189	55	179	2	.	0	0	0	0	0
C10orf71	118461	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50530784	50530784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.G194T	p.G65V	TGTTTGGGACTTT	.	264	92	247	1	.	0	0	0	0	0
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	50532949	50532949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.G2359T	p.G787W	AGCAATGGGCACG	.	197	68	153	0	.	0	0	0	0	0
C10orf71	118461	bcgsc.ca	37	10	50534259	50534259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.C3669A	p.C1223X	GCTGTGCCCCAGA	.	221	80	173	2	.	0	0	0	0	0
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50819769	50819769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A3-92	NM_003055	exon1	c.G983T	p.G328V	AGATGGGCATGGC	.	59	17	39	0	.	0	0	0	0	0
CHAT	1103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50854688	50854688	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHAT-514	NM_020549	exon8	c.G1249C	p.G417R	AAGAACGGGGCCA	.	273	86	235	0	.	0	0	0	0	0
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51040918	51040918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARG-948	NM_003631	exon16	c.G2578T	p.E860X	GATTCTCTGAAGA	.	163	52	145	0	.	0	0	0	0	0
SGMS1	259230	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	52067049	52067049	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGMS1-227	NM_147156	exon11	c.G1095C	p.L365L	CCTGGCCAGGAGG	.	112	54	80	2	.	0	0	0	0	0
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52573773	52573773	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1CF-68	NM_001198819	exon12	c.C1215A	p.G405G	ACGGCCGCCCAGT	.	93	32	83	0	.	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56106181	56106181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH15-193	NM_001142763	exon7	c.G553C	p.D185H	CATCATCTATATC	.	75	15	56	0	.	0	0	0	0	0
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	60562966	60562966	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BICC1-72	NM_001080512	exon15	c.C2145T	p.A715A	AAGGGCCCACCTT	.	108	26	152	0	.	0	0	0	0	0
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61029737	61029737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_198215	exon7	c.C725A	p.S242Y	AAGATGGAGCATC	.	130	53	216	0	.	0	0	0	0	0
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61112192	61112192	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_198215	exon3	c.G162T	p.L54L	TTCTACCAGAGCC	.	33	8	36	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61815615	61815615	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK3-107	NM_020987	exon42	c.G12866C	p.G4289A	CCAGATCCATGTA	.	111	47	123	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70450767	70450767	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TET1-663	NM_030625	exon12	c.A5607T	p.S1869S	AGCCTCATGCGGG	.	96	26	74	0	.	0	0	0	0	0
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644278	70644278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STOX1-92	NM_152709	exon3	c.G726T	p.Q242H	CTGTCAGTCTTGC	.	109	46	126	0	.	0	0	0	0	0
COL13A1	1305	broad.mit.edu;bcgsc.ca	37	10	71658494	71658494	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL13A1-91	NM_001130103	exon14	c.G756T	p.P252P	ACCCCCGGTCATA	.	79	12	79	0	.	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73326680	73326680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon7	c.C611A	p.T204K	AGCTCACGGTCAA	.	29	22	50	0	.	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73405591	73405591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon12	c.C1144A	p.L382M	CAGGGCCTGAACA	.	237	96	218	0	.	0	0	0	0	0
CDH23	64072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73447457	73447457	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_022124	exon18	c.G2040T	p.V680V	CTCCGTGGTGGAG	.	129	29	103	1	.	0	0	0	0	0
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73766985	73766985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHST3-90	NM_004273	exon3	c.G196T	p.D66Y	AGCACCGACCCAG	.	105	39	123	0	.	0	0	0	0	0
PPP3CB	5532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75239173	75239173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP3CB-226	NM_001142354	exon2	c.G188T	p.G63V	ACTCGACCTTCTT	.	107	29	126	0	.	0	0	0	0	0
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76861715	76861715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP13-226	NM_001007273	exon3	c.A188T	p.Q63L	TGATGCTGTTTCT	.	56	10	62	0	.	0	0	0	0	0
RPS24	6229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79814544	79814544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPS24-91	NM_001142285	exon5	c.G646T	p.V216F	GCACTGGTCAGAA	.	192	82	173	0	.	0	0	0	0	0
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85961590	85961590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDHR1-91	NM_001171971	exon7	c.C553A	p.R185S	GTGGACCGCCACA	.	33	16	30	0	.	0	0	0	0	0
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88649911	88649911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1A-1619	NM_004329	exon4	c.G160C	p.D54H	CCAGAGGATACCT	.	234	47	254	0	.	0	0	0	0	0
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91177055	91177055	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IFIT5-90	NM_012420	exon2	c.G99A	p.E33E	GTTTGAGGTAGAA	.	125	40	138	0	.	0	0	0	0	0
IDE	3416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94239048	94239048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDE-92	NM_004969	exon15	c.A1870G	p.I624V	CATAGATGGTATT	.	77	26	88	1	.	0	0	0	0	0
PIPSL	266971	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95720969	95720969	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TCCACCATGTGGA	.	311	47	342	1	.	0	0	0	0	0
ALDH18A1	5832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97386505	97386505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH18A1-117	NM_002860	exon10	c.G1107T	p.M369I	TCGCGCCATTTCT	.	97	21	115	1	.	0	0	0	0	0
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98355338	98355338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3AP1-519	NM_152309	exon17	c.G2414C	p.R805P	AATCAGCGTCCTC	.	180	39	203	0	.	0	0	0	0	0
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98766287	98766287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT1-94	NM_003061	exon32	c.C3532A	p.Q1178K	TGAACTGCAGGTA	.	229	91	212	1	.	0	0	0	0	0
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100143584	100143584	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PYROXD2-90	NM_032709	exon16	c.G1717C	p.V573L	AGGCCACATGTGC	.	102	41	116	1	.	0	0	0	0	0
PYROXD2	84795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100159880	100159880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PYROXD2-90	NM_032709	exon5	c.G450T	p.Q150H	GGAGAACTGGGCG	.	79	32	109	0	.	0	0	0	0	0
CWF19L1	55280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101995432	101995432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CWF19L1-90	NM_018294	exon13	c.G1464A	p.Q488Q	TCCAAACTGCAAA	.	25	6	23	0	.	0	0	0	0	0
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102568924	102568924	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003987	exon8	c.C919T	p.L307L	TCGAGTCTATCTG	.	100	43	100	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159416	104159416	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFKB2-522	NM_001077494	exon14	c.G1410T	p.A470A	GGACGCGCGCGCG	.	68	25	2	0	.	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	24	20	0	0	C|0.759;A|0.241	0	0	0	0	0
INA	9118	hgsc.bcm.edu	37	10	105037222	105037222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INA-154	NM_032727	exon1	c.A254G	p.N85S	GCACCAACGAGTA	.	50	13	10	0	.	0	0	0	0	0
CALHM3	119395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105236155	105236155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALHM3-67	NM_001129742	exon2	c.C439A	p.Q147K	GTACCTGGCTGGG	.	425	140	254	0	.	0	0	0	0	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu	37	10	106401534	106401534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon1	c.C449T	p.P150L	CTGCTCCGGCCGA	.	107	14	18	0	.	0	0	0	0	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106737189	106737189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon4	c.C892A	p.Q298K	TATATCCAGAGCC	.	58	9	31	0	.	0	0	0	0	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106970974	106970974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon17	c.T2341A	p.C781S	AAGGACTGCAGCC	.	216	59	186	0	.	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108338952	108338952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon26	c.G3429T	p.M1143I	ACTGATCATCTCT	.	115	26	76	0	.	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108448031	108448031	+	Missense_Mutation	SNP	G	G	C	rs145364719	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon10	c.C1479G	p.I493M	ATATGTGATGAAA	.	189	26	146	0	G|1.000;A|0.000	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108589374	108589374	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon3	c.C684A	p.T228T	CAAAATGGTTTTC	.	160	17	108	0	.	0	0	0	0	0
SORCS1	114815	broad.mit.edu;bcgsc.ca	37	10	108923768	108923768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon1	c.C517T	p.H173Y	GGTTGTGTGCTGA	.	127	8	85	0	.	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112572474	112572474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001134363	exon9	c.G2319T	p.K773N	TCTGAAGCAGCAG	.	159	70	98	0	.	0	0	0	0	0
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112838012	112838012	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.C258T	p.F86F	CCTCTTCCTGGTG	.	239	79	128	0	.	0	0	0	0	0
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112838129	112838129	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.G375T	p.L125L	CTACCTGGCGCTC	.	311	83	161	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115991245	115991245	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3539delA	p.K1180fs	TTTCAGAAACAGC	.	59	18	52	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu	37	10	115991246	115991247	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3540_3541del	p.1180_1181del	TTCAGAAACAGCA	.	59	0	52	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	59	17	52	0	.	0	0	0	0	0
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116201527	116201527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_002313	exon18	c.C1952T	p.S651F	GTTTTAGATGATG	.	163	39	90	0	.	0	0	0	0	0
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116444073	116444073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_001003407	exon1	c.C40T	p.H14Y	TGTGATGAGGGTC	.	275	63	138	0	.	0	0	0	0	0
GFRA1	2674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118030372	118030372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GFRA1-93	NM_005264	exon3	c.G296T	p.C99F	CGCAGGCAGTTCT	.	152	37	83	0	.	0	0	0	0	0
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118306857	118306857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon3	c.G98T	p.W33L	CCCCATGGTCAGG	.	161	21	104	0	.	0	0	0	0	0
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118315585	118315585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon9	c.T885G	p.D295E	CCCTGATGGCTTT	.	184	45	104	0	.	0	0	0	0	0
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	118350667	118350667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIPRP1-154	NM_006229	exon2	c.26delT	p.L9fs	TCACACTTTTCCT	.	69	19	38	0	.	0	0	0	0	0
PNLIPRP2	5408	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118383552	118383552	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIPRP2-67	.	.	.	.	GGTCCCCCGAGGA	.	209	51	111	1	.	0	0	0	0	0
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118424447	118424447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon4	c.G286C	p.V96L	TCTTTACATATTT	.	46	7	32	0	.	0	0	0	0	0
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118425218	118425218	+	Missense_Mutation	SNP	C	C	G	rs144390968	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon3	c.G175C	p.A59P	CCACTGCGCAGCA	.	260	35	149	0	C|1.000;T|0.000	0	0	0	0	0
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	118893665	118893665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon3	c.C859A	p.R287S	ACAGGCGGCTGGC	.	62	16	18	0	.	0	0	0	0	0
VAX1	11023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118896161	118896161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon2	c.G251T	p.G84V	ATGGACCCCTTGG	.	325	74	207	2	.	0	0	0	0	0
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	118897336	118897336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon1	c.C232A	p.L78M	GGACCAGGATCCG	.	146	58	50	0	.	0	0	0	0	0
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118969655	118969655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK18-91	NM_181840	exon3	c.C1000A	p.P334T	GAACACCCTAACT	.	316	105	199	0	.	0	0	0	0	0
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003663	119003663	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A2-90	NM_003054	exon3	c.C303A	p.T101T	TCAGACCGCCACA	.	231	41	135	0	.	0	0	0	0	0
EMX2	2018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119305183	119305183	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EMX2-90	NM_004098	exon2	c.G447T	p.A149A	CAACGCGCTGGCC	.	606	223	410	1	.	0	0	0	0	0
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120353662	120353662	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.C1095G	p.T365T	GCTGACGGTCATA	.	331	53	161	0	.	0	0	0	0	0
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120354576	120354576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.G181T	p.G61W	TCAGCCCCTTCAG	.	372	97	80	0	.	0	0	0	0	0
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	120921874	120921874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFXN4-91	NM_213649	exon3	c.G230A	p.S77N	GCAGGGCTGGAAA	.	329	122	195	0	.	0	0	0	0	0
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121685604	121685604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEC23IP-93	NM_007190	exon13	c.G2178T	p.E726D	ACAAGAGCAAAGT	.	168	68	134	0	.	0	0	0	0	0
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124008228	124008228	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACC2-296	NM_206862	exon20	c.C8463T	p.A2821A	GCAAGCCCTGGCC	.	181	33	110	0	.	0	0	0	0	0
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402801	124402801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMBT1-494	NM_007329	exon53	c.G7129C	p.G2377R	TACCGAGGCTGTG	.	570	143	304	2	.	0	0	0	0	0
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124909282	124909282	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon2	c.C465A	p.V155V	CACCGTCTTTTCG	.	196	29	98	1	.	0	0	0	0	0
CPXM2	119587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	125530486	125530486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon8	c.G1048T	p.G350C	TCAGGCCCTGGTG	.	247	85	146	2	.	0	0	0	0	0
CPXM2	119587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	125530489	125530489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon8	c.C1045A	p.Q349K	GGCCCTGGTGGCT	.	246	80	154	3	.	0	0	0	0	0
FANK1	92565	broad.mit.edu	37	10	127585214	127585214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FANK1-91	NM_145235	exon1	c.G3C	p.M1I	GACCATGGAGCCC	.	218	10	12	0	.	0	0	0	0	0
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127806696	127806696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM12-716	NM_021641	exon6	c.G523T	p.V175F	CCCGGACGCTTTT	.	235	54	135	0	.	0	0	0	0	0
C10orf90	118611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128147643	128147643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf90-92	NM_001004298	exon6	c.C1863A	p.S621R	CTTCTTGCTGGTG	.	200	64	100	1	.	0	0	0	0	0
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	128153420	128153420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf90-92	NM_001004298	exon4	c.G1379C	p.C460S	GACAGACAGTCAT	.	279	25	164	0	.	0	0	0	0	0
MGMT	4255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131565118	131565118	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGMT-1108	NM_002412	exon5	c.G574C	p.G192R	TCCGGAGGACTGG	.	338	41	220	0	.	0	0	0	0	0
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131638572	131638572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF3-91	NM_001005463	exon15	c.G1561T	p.V521L	GGACCACGGGCGC	.	207	30	125	0	.	0	0	0	0	0
JAKMIP3	282973	ucsc.edu;bcgsc.ca	37	10	133931066	133931066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JAKMIP3-23	NM_001105521	exon2	c.G621T	p.E207D	GCGGGAGATCCGC	.	233	86	114	2	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	21	14	0	0	C|0.431;G|0.569	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219066	134219066	+	Silent	SNP	G	G	C	rs76595411	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	40	25	3	0	G|0.955;C|0.045	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134648207	134648207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon48	c.G6817A	p.E2273K	GCTCCTCCAGGGG	.	239	68	154	0	.	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134663902	134663902	+	Missense_Mutation	SNP	C	C	T	rs143782266	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon41	c.G5798A	p.G1933E	AGTGCCCCGTGTG	.	346	92	103	0	C|0.999;G|0.001	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134664665	134664665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon40	c.G5719T	p.A1907S	AGTCCGCCAGCAG	.	209	31	145	0	.	0	0	0	0	0
TUBGCP2	10844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135106162	135106162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TUBGCP2-90	NM_001256617	exon9	c.G1139T	p.G380V	GACCCCCCAAGAC	.	226	68	113	2	.	0	0	0	0	0
ZNF511	118472	hgsc.bcm.edu	37	10	135122507	135122507	+	Silent	SNP	G	G	A	rs3008357		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF511-90	NM_145806	exon1	c.G60A	p.P20P	GGAGCCGCTGCCT	.	39	15	0	0	G|0.816;A|0.184	0	0	0	0	0
ECHS1	1892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135179540	135179540	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECHS1-90	NM_004092	exon6	c.G679T	p.E227X	TTTTTTCTGCACA	.	127	28	78	0	.	0	0	0	0	0
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135209699	135209699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTG1-91	NM_138384	exon3	c.G210T	p.Q70H	GTTTCAGGAAACC	.	146	24	89	0	.	0	0	0	0	0
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	418479	418479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO9-227	NM_001012302	exon23	c.G2241A	p.M747I	ATGCCACATCTTC	.	126	60	156	1	.	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	607214	607214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHRF1-22	NM_020901	exon14	c.A1755T	p.Q585H	CTGTCAAGGCAGG	.	45	32	21	0	.	0	0	0	0	0
EPS8L2	64787	bcgsc.ca	37	11	721570	721570	+	Silent	SNP	C	C	T	rs7635	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPS8L2-91	NM_022772	exon10	c.C774T	p.I258I	GCAAATCCTCAAC	.	175	6	162	1	C|0.686;T|0.314	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1269567	1269567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002458	exon31	c.G11457T	p.M3819I	CACCATGTCCACA	.	599	261	740	1	.	0	0	0	0	0
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1464775	1464775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRSK2-333	NM_001256630	exon8	c.G828T	p.R276R	GAAGCGGGGCGTG	.	62	34	51	0	.	0	0	0	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606164	1606164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP5-1-44	NM_001005922	exon1	c.A316C	p.K106Q	CCCCCTTGGAGCC	.	86	7	104	2	.	0	0	0	0	0
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4592668	4592668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C11orf40-92	NM_144663	exon4	c.G639C	p.L213F	GGACTTCAAGTAG	.	37	22	70	0	.	0	0	0	0	0
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4968178	4968178	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR51A4-71	NM_001005329	exon1	c.C153A	p.I51I	TGTCTTGATGATA	.	510	300	794	1	.	0	0	0	0	0
OR52E8	390079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5878658	5878658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR52E8-70	NM_001005168	exon1	c.G275C	p.W92S	TTGAACCAGAAGA	.	113	62	158	1	.	0	0	0	0	0
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6245247	6245247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM160A2-92	NM_032127	exon3	c.G370T	p.E124X	GTTCCTCGACCCC	.	73	36	101	0	.	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6661671	6661671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS1-73	NM_003737	exon2	c.G1174T	p.D392Y	CTGGGTCTGACAC	.	69	33	134	0	.	0	0	0	0	0
OR2D2	120776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6913108	6913108	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D2-501	NM_003700	exon1	c.C624A	p.L208L	AGGTATGAGGAGA	.	68	37	92	0	.	0	0	0	0	0
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6942958	6942958	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D3-68	NM_001004684	exon1	c.C726A	p.I242I	TGTTATCCAGATG	.	146	75	213	0	.	0	0	0	0	0
OR5P2	120065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7817640	7817640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5P2-496	NM_153444	exon1	c.C850A	p.L284M	AGATCAGGGGGTT	.	206	119	224	0	.	0	0	0	0	0
SBF2	81846	bcgsc.ca	37	11	10019853	10019853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SBF2-93	NM_030962	exon9	c.C935A	p.P312Q	GGTTCTGGGAGGG	.	53	4	72	0	.	0	0	0	0	0
ADM	133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10328160	10328160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADM-514	NM_001124	exon4	c.C530A	p.P177Q	CCCCCCCGAGTGG	.	118	70	96	0	.	0	0	0	0	0
SPON1	10418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14063180	14063180	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPON1-1	.	.	.	.	CAGCGGGAACAGG	.	57	30	99	1	.	0	0	0	0	0
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15197588	15197588	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INSC-94	NM_001031853	exon3	c.G499T	p.E167X	GTCAGCGAGTACA	.	146	59	187	0	.	0	0	0	0	0
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	16256218	16256218	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX6-93	NM_001145811	exon5	c.446-1G>T	.	AGGAATCTATTAA	.	11	6	12	0	.	0	0	0	0	0
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17552712	17552712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH1C-91	NM_005709	exon4	c.G376T	p.V126F	GCCCGACGCTGTC	.	128	73	199	0	.	0	0	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21596527	21596527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NELL1-155	NM_006157	exon20	c.G2392T	p.V798F	GGAAGAGTCTGTT	.	58	26	105	0	.	0	0	0	0	0
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22363120	22363120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon2	c.G133C	p.E45Q	CTGACGGAGGATG	.	57	33	102	0	.	0	0	0	0	0
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22399006	22399006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon12	c.G1469T	p.G490V	ATGGTGGAGTTAT	.	88	51	149	0	.	0	0	0	0	0
KCNA4	3739	hgsc.bcm.edu	37	11	30034154	30034154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA4-517	NM_002233	exon2	c.G72T	p.Q24H	CCGGGCCTGGGCA	.	19	6	15	0	.	0	0	0	0	0
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30915876	30915876	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCDC5-23	NM_020869	exon16	c.G2133T	p.V711V	GGGCTGCACAGGG	.	56	26	85	0	.	0	0	0	0	0
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414240	32414240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WT1-6891	NM_024424	exon8	c.G1311T	p.Q437H	TTTGAGCTGGTCT	.	142	80	185	0	.	0	0	0	0	0
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32635948	32635948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC73-91	NM_001008391	exon16	c.T1916A	p.I639K	GGAACAGGATTTT	.	38	21	52	0	.	0	0	0	0	0
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32956724	32956724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QSER1-95	NM_001076786	exon4	c.G3533T	p.R1178L	CTAGACGGCCAGG	.	68	35	131	0	.	0	0	0	0	0
KIAA1549L	25758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33564462	33564462	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_012194	exon1	c.A462T	p.S154S	TTTGTCAGCAGCT	.	65	33	94	0	.	0	0	0	0	0
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35453941	35453941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAMR1-70	NM_015430	exon12	c.T2177G	p.L726R	AAAGGCAGCACCT	.	45	21	63	1	.	0	0	0	0	0
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35457622	35457622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAMR1-70	NM_015430	exon10	c.C1213A	p.P405T	TGGTAGGGGCACT	.	255	142	308	0	.	0	0	0	0	0
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596616	36596616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAG1-230	NM_000448	exon2	c.G1762T	p.D588Y	CTTGATGATTACC	.	136	75	198	1	.	0	0	0	0	0
LRRC4C	57689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40137767	40137767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC4C-521	NM_001258419	exon7	c.C76A	p.L26M	CAAGCAGGGGGTC	.	136	69	171	1	.	0	0	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46880716	46880716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP4-94	NM_002334	exon38	c.G5536T	p.D1846Y	CCGTGTCTGTCTT	.	87	27	107	0	.	0	0	0	0	0
OR4S1	256148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48328090	48328090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4S1-69	NM_001004725	exon1	c.G316C	p.G106R	TTCTTTGGTGGCA	.	84	52	116	0	.	0	0	0	0	0
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	49195014	49195014	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLH1-579	NM_004476	exon10	c.C1120T	p.L374L	CTCCCAGAATGAC	.	80	38	117	0	.	0	0	0	0	0
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51515827	51515827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C46-69	NM_001004703	exon1	c.G546T	p.L182F	CCCTTTGCTCAAC	.	103	54	124	0	.	0	0	0	0	0
OR4C46	119749	ucsc.edu;bcgsc.ca	37	11	51515989	51515989	+	Silent	SNP	C	C	T	rs141793341	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C46-69	NM_001004703	exon1	c.C708T	p.S236S	CCTCTCCACCTGT	.	114	33	143	0	C|0.991;T|0.009	0	0	0	0	0
OR4C15	81309	bcgsc.ca	37	11	55322211	55322211	+	Silent	SNP	A	A	G	rs9804659	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C15-70	NM_001001920	exon1	c.A429G	p.K143K	GACAAAAACCATC	.	44	4	60	0	A|0.760;G|0.240	0	0	0	0	0
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371701	55371701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C11-69	NM_001004700	exon1	c.G149A	p.S50N	GTCCGGCTGGACT	.	34	23	59	0	.	0	0	0	0	0
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55432829	55432829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C6-70	NM_001004704	exon1	c.T187A	p.F63I	CTTACCTTCTTGT	.	113	70	141	0	.	0	0	0	0	0
OR5D16	390144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55606310	55606310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5D16-73	NM_001005496	exon1	c.C83T	p.P28L	AAATTCCCCTCTT	.	73	41	92	0	.	0	0	0	0	0
OR5W2	390148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55681212	55681212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5W2-70	NM_001001960	exon1	c.C847G	p.P283A	ACATGGGAACCAC	.	53	16	93	0	.	0	0	0	0	0
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56058500	56058500	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8H1-71	NM_001005199	exon1	c.C39A	p.I13I	CGTAAGGATGAAG	.	29	16	41	0	.	0	0	0	0	0
OR8U1	219417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56143148	56143148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8U1-72	NM_001005204	exon1	c.C49A	p.L17I	GTGGGCCTCACAG	.	71	44	115	0	.	0	0	0	0	0
OR5R1	219479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56185247	56185247	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5R1-70	NM_001004744	exon1	c.G462T	p.L154L	GGCAACCAGGAAG	.	94	56	137	0	.	0	0	0	0	0
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57970677	57970677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1S2-69	NM_001004459	exon1	c.G977C	p.X326S	GGGCATCAAAGGG	.	104	66	170	0	.	0	0	0	0	0
OR5B3	441608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58170454	58170454	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B3-68	NM_001005469	exon1	c.C429T	p.A143A	GCCTATGGCCAGA	.	97	57	152	0	.	0	0	0	0	0
OR5B2	390190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58190520	58190520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B2-71	NM_001005566	exon1	c.C215A	p.S72Y	GCTGAGGAGTATC	.	129	80	189	0	.	0	0	0	0	0
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207133	58207133	+	Silent	SNP	G	G	A	rs146093633		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B12-68	NM_001004733	exon1	c.C492T	p.L164L	GAAGGAGAGCCTG	.	139	83	161	0	G|1.000;A|0.000	0	0	0	0	0
OR5AN1	390195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59132631	59132631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5AN1-69	NM_001004729	exon1	c.G700T	p.G234C	GCTAAAGGCAGGT	.	112	69	164	0	.	0	0	0	0	0
CCDC86	79080	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60617436	60617436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC86-90	NM_024098	exon3	c.G912T	p.E304D	GGCTGAGAACCTG	.	95	45	146	1	.	0	0	0	0	0
LRRC10B	390205	hgsc.bcm.edu	37	11	61277031	61277031	+	Silent	SNP	C	C	T	rs1139011	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145077	exon1	c.C561T	p.L187L	CATCCTCGACCTC	.	25	6	3	0	C|0.816;T|0.184	0	0	0	0	0
MYRF	745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61533677	61533677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127392	exon3	c.G382T	p.A128S	CCCAAGGCTCCCT	.	61	38	58	1	.	0	0	0	0	0
SLC22A24	283238	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62886491	62886491	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136506	exon4	c.C723A	p.Y241X	AACACTGTAGGAA	.	147	95	181	2	.	0	0	0	0	0
FLRT1	23769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63885551	63885551	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLRT1-90	NM_013280	exon2	c.G1812A	p.G604G	GTCAGGGACCAAG	.	171	79	178	1	.	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64375221	64375221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN2-232	NM_015080	exon23	c.C4586T	p.P1529L	TTGCGGGGTGACA	.	124	58	59	0	.	0	0	0	0	0
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64402917	64402917	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN2-232	NM_015080	exon18	c.C3411A	p.T1137T	GTATGTGGTCCCG	.	98	33	62	1	.	0	0	0	0	0
ZFPL1	7542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64855517	64855517	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPL1-91	NM_006782	exon8	c.G864T	p.R288R	AGGCCGGGCCGCA	.	100	41	58	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0
FAM89B	23625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65340987	65340987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM89B-90	NM_001098784	exon2	c.G455T	p.G152V	GATGCGGGCCTGT	.	225	25	159	1	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	8	0	0	C|0.233;T|0.767	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu	37	11	65810462	65810463	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAL3ST3-91	NM_033036	exon3	c.811_812del	p.271_271del	CTGGCGGCGCGCG	.	54	24	4	0	.	0	0	0	0	0
TMEM151A	256472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66062127	66062127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM151A-90	NM_153266	exon2	c.C410A	p.A137E	TGCTGGCGCTGAT	.	93	21	13	0	.	0	0	0	0	0
ACTN3	89	broad.mit.edu;bcgsc.ca	37	11	66326794	66326794	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN3-90	.	.	.	.	CCTTTGAGAGCGA	.	245	88	66	1	.	0	0	0	0	0
CCS	9973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66366693	66366693	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCS-90	NM_005125	exon3	c.G219T	p.A73A	GCAGGCGGTACTC	.	90	20	87	0	.	0	0	0	0	0
SPTBN2	6712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66466921	66466921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTBN2-155	NM_006946	exon17	c.C3732G	p.I1244M	GGCGTGGATGTTG	.	197	79	147	2	.	0	0	0	0	0
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66838961	66838961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHOD-659	NM_014578	exon5	c.G521A	p.R174Q	CGGCTCGGCTCCA	.	192	41	38	0	.	0	0	0	0	0
GPR152	390212	bcgsc.ca;mdanderson.org	37	11	67219676	67219676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR152-90	NM_206997	exon1	c.G520A	p.V174I	ACCAGACGGCAGC	.	131	48	36	1	.	0	0	0	0	0
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67264702	67264702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITPNM1-227	NM_001130848	exon14	c.G2146T	p.A716S	ACTCACCCTCCAG	.	240	100	210	0	.	0	0	0	0	0
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	69625429	69625429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF3-847	NM_005247	exon3	c.C364A	p.H122N	GCTCGTGGATCCG	.	204	104	211	1	.	0	0	0	0	0
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	70331792	70331792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHANK2-94	NM_133266	exon10	c.G2842T	p.G948W	CTTGCCCATCTGC	.	161	76	211	1	.	0	0	0	0	0
KRTAP5-9	3846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71259735	71259735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_005553	exon1	c.G32T	p.G11V	GCTGTGGCTCCAG	.	331	189	405	1	.	0	0	0	0	0
UCP2	7351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73687909	73687909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCP2-90	NM_003355	exon5	c.A491T	p.K164M	ATGGTCTTGTAGG	.	229	116	281	0	.	0	0	0	0	0
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	74978733	74978733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARRB1-567	NM_004041	exon15	c.A1108T	p.T370S	CTGGCGTCTCGTT	.	13	8	19	0	.	0	0	0	0	0
UVRAG	7405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75563004	75563004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UVRAG-229	NM_003369	exon2	c.A194T	p.Y65F	ATACCTACTTTAC	.	64	33	92	0	.	0	0	0	0	0
TMEM135	65084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	87013485	87013485	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM135-514	NM_001168724	exon7	c.632+1G>T	.	TTCAATGTGAGCT	.	56	24	105	0	.	0	0	0	0	0
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88045699	88045699	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTSC-90	NM_001814	exon3	c.G342C	p.V114V	AGTGGTCACCTTG	.	61	32	62	0	.	0	0	0	0	0
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	88242036	88242036	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM5-949	NM_001143831	exon9	c.C3363T	p.I1121I	GACTTCGATGGCC	.	71	31	58	0	.	0	0	0	0	0
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89223635	89223635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX4-515	NM_001143836	exon2	c.G144C	p.Q48H	CAACATCTGGTGG	.	27	17	31	0	.	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534391	92534391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon9	c.G8212A	p.V2738I	CAGAATGTCTGGT	.	56	30	116	0	.	0	0	0	0	0
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94039684	94039684	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLR4-23	NM_001199206	exon2	c.C144T	p.I48I	GTGCATCCCCTGG	.	79	39	87	0	.	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99942487	99942487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN5-366	NM_001243270	exon11	c.A1350T	p.Q450H	GAATCAATCAGAT	.	81	50	127	0	.	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108236144	108236144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATM-3419	NM_000051	exon63	c.G9080T	p.S3027I	TGCTCAGTGTTGG	.	46	28	67	0	.	0	0	0	0	0
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	110482045	110482045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP20-230	NM_020809	exon8	c.G696T	p.M232I	CCCTAGCATTGGT	.	48	23	99	0	.	0	0	0	0	0
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111956172	111956172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIMM8B-90	NM_012459	exon2	c.G144T	p.M48I	TAACTCCATGAAG	.	42	24	48	0	.	0	0	0	0	0
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112087010	112087010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCO2-68	NM_031938	exon11	c.A1583C	p.E528A	ATGAAGAAGATGG	.	95	57	128	0	.	0	0	0	0	0
FXYD6-FXYD2	100533181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117691574	117691574	+	Missense_Mutation	SNP	C	C	T	rs139816783	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001204268	exon9	c.G410A	p.R137K	GCTCACCTGCGCT	.	34	18	43	0	C|1.000;T|0.000	0	0	0	0	0
SCN2B	6327	bcgsc.ca	37	11	118038851	118038851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2B-90	NM_004588	exon3	c.C397G	p.P133A	GGTCAGGGGGGTT	.	199	127	253	4	.	0	0	0	0	0
NLRX1	79671	bcgsc.ca	37	11	119052826	119052826	+	Missense_Mutation	SNP	C	C	A	rs4245191	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRX1-92	NM_024618	exon9	c.C2378A	p.A793E	TGACGGCGGCAGG	.	109	5	107	0	C|0.378;A|0.622	0	0	0	0	0
TECTA	7007	bcgsc.ca	37	11	120998820	120998820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TECTA-225	NM_005422	exon8	c.G2134C	p.V712L	GAGACCGTGTGCC	.	82	47	75	2	.	0	0	0	0	0
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122929389	122929389	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1473T	p.V491V	CTTGTCCACAGCA	.	28	13	61	0	.	0	0	0	0	0
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122929391	122929391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1471T	p.V491L	TGTCCACAGCAGA	.	28	13	61	0	.	0	0	0	0	0
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123847992	123847992	+	Missense_Mutation	SNP	C	C	A	rs199683540	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10S1-70	NM_001004474	exon1	c.G407T	p.R136L	AGATAGCGGTCAT	.	101	57	119	0	.	0	0	0	0	0
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124015980	124015980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWA5A-92	NM_014622	exon17	c.G2191T	p.V731L	CTGGCCGTGATCT	.	65	44	125	0	.	0	0	0	0	0
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124440239	124440239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8A1-69	NM_001005194	exon1	c.C275T	p.S92F	ACTCCTCCGTCAT	.	84	46	122	0	.	0	0	0	0	0
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132204993	132204993	+	Missense_Mutation	SNP	G	G	T	rs145004908	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTM-95	NM_001144058	exon8	c.G1021T	p.V341F	GGCTGCGTCTGGC	.	43	27	57	0	G|1.000;A|0.000	0	0	0	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1994182	1994182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA2D4-23	NM_172364	exon10	c.C1129A	p.L377M	CTCTCAGGGCTTG	.	113	73	132	0	.	0	0	0	0	0
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4554551	4554551	+	Silent	SNP	G	G	C	rs202212518	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF6-659	NM_020996	exon1	c.C186G	p.R62R	CCCGGCGCGAGAC	.	86	52	69	0	G|0.999;A|0.000	0	0	0	0	0
GALNT8	26290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4829958	4829958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT8-230	NM_017417	exon1	c.G115T	p.G39C	TTTACGGGTGGTC	.	144	91	124	1	.	0	0	0	0	0
KCNA6	3742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	4920365	4920365	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA6-93	NM_002235	exon1	c.G1158A	p.G386G	CATCGGGGTCATC	.	267	176	275	1	.	0	0	0	0	0
KCNA5	3741	bcgsc.ca	37	12	5153809	5153809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA5-715	NM_002234	exon1	c.G496T	p.D166Y	TTCTTCGACCGCA	.	105	75	103	2	.	0	0	0	0	0
ANO2	57101	broad.mit.edu;bcgsc.ca	37	12	6030236	6030236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO2-139	NM_020373	exon3	c.G492T	p.E164D	TCCAGCCTCCATC	.	85	62	79	2	.	0	0	0	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6078387	6078387	+	Missense_Mutation	SNP	G	G	T	rs192262780		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon45	c.C7719A	p.S2573R	GCGACAGCTTGGG	.	155	102	173	0	G|0.999;T|0.000	0	0	0	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6125362	6125362	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon31	c.C5348G	p.S1783X	ATTTCTGAAGTCA	.	286	74	227	0	.	0	0	0	0	0
LAG3	3902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6883823	6883823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAG3-90	NM_002286	exon4	c.A574T	p.S192C	TCCTTCAGCCGCC	.	104	66	89	1	.	0	0	0	0	0
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7528358	7528358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD163L1-100	NM_174941	exon10	c.C2624T	p.P875L	ACAATGGGGCATA	.	135	95	126	0	.	0	0	0	0	0
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8212382	8212382	+	Missense_Mutation	SNP	G	G	C	rs61736561	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C3AR1-227	NM_004054	exon2	c.C400G	p.R134G	CATTGCGATGATT	.	122	76	151	0	G|0.986;A|0.014	0	0	0	0	0
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8813475	8813475	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MFAP5-577	NM_003480	exon3	c.C78A	p.V26V	ACTATTGACCCCC	.	58	35	77	0	.	0	0	0	0	0
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9334698	9334698	+	Missense_Mutation	SNP	G	G	T	rs188078627	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PZP-157	NM_002864	exon14	c.C1562A	p.A521D	GATAAGGCAAAAC	.	118	75	104	1	G|0.999;A|0.001	0	0	0	0	0
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9353011	9353011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PZP-157	NM_002864	exon7	c.C704A	p.P235Q	ATCTTTGGCACCT	.	60	36	69	1	.	0	0	0	0	0
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10782211	10782211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STYK1-1379	NM_018423	exon6	c.G514T	p.G172W	GTTTCCCCAGGTA	.	64	33	91	0	.	0	0	0	0	0
ATF7IP	55729	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14578095	14578095	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATF7IP-252	NM_018179	exon2	c.G1246T	p.E416X	GTTATTGAAGATA	.	31	19	54	1	.	0	0	0	0	0
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	20523173	20523173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE3A-94	NM_000921	exon1	c.G955T	p.E319X	CCGAGGGAACAGG	.	37	25	53	0	.	0	0	0	0	0
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20886031	20886031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO1C1-97	NM_017435	exon10	c.T1375A	p.Y459N	GTCTCCTACCAAG	.	49	30	51	0	.	0	0	0	0	0
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	23893815	23893815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX5-655	NM_006940	exon5	c.C727A	p.Q243K	GTTGCTGCTTGGC	.	50	33	74	0	.	0	0	0	0	0
MANSC4	100287284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27915672	27915672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146221	exon3	c.A1022T	p.X341L	TTTTACTATGAAG	.	60	33	43	0	.	0	0	0	0	0
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	28605587	28605587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC91-90	NM_018318	exon10	c.G1101C	p.Q367H	AAGTCAGGTTAGT	.	35	14	53	0	.	0	0	0	0	0
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29598275	29598275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon23	c.G2817T	p.R939S	TGTCACCCTCACC	.	52	34	64	0	.	0	0	0	0	0
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29607850	29607850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon21	c.G2454T	p.Q818H	ATTTGTCTGAAGT	.	60	36	83	0	.	0	0	0	0	0
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29628092	29628092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon14	c.C1502A	p.S501X	AATATTGAAGTGA	.	103	70	151	0	.	0	0	0	0	0
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29908758	29908758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMTC1-90	NM_001193451	exon4	c.G615T	p.L205F	GAGCAGCAAGAAG	.	82	47	95	0	.	0	0	0	0	0
KIAA1551	55196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	32134534	32134534	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_018169	exon4	c.A645T	p.P215P	ACCTCCAAAGCTA	.	95	68	101	1	.	0	0	0	0	0
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32136907	32136907	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_018169	exon4	c.A3018T	p.T1006T	AAGCACAGCTAAC	.	54	36	53	0	.	0	0	0	0	0
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39695356	39695356	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21A-97	NM_001173464	exon37	c.G4857T	p.V1619V	CTCTCCCACTGGC	.	171	126	179	0	.	0	0	0	0	0
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41463834	41463834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN1-1149	NM_001843	exon24	c.C3054A	p.F1018L	GGAATTCTGAATG	.	72	49	85	0	.	0	0	0	0	0
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43821221	43821221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS20-795	NM_025003	exon27	c.G3997T	p.D1333Y	TTTCATCCTGGCA	.	94	56	102	0	.	0	0	0	0	0
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44142372	44142372	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUS7L-91	NM_001098614	exon3	c.G951T	p.A317A	ACCAATCGCTTCA	.	38	26	40	0	.	0	0	0	0	0
TWF1	5756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	44190794	44190794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TWF1-797	NM_001242397	exon9	c.G888T	p.M296I	TACATCCATTTGT	.	58	41	91	0	.	0	0	0	0	0
DBX2	440097	broad.mit.edu;bcgsc.ca	37	12	45444412	45444412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DBX2-90	NM_001004329	exon1	c.G299C	p.G100A	CGCGTTCCGTAGG	.	158	70	103	1	.	0	0	0	0	0
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45742042	45742042	+	Missense_Mutation	SNP	G	G	C	rs145491348	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO6-516	NM_001204803	exon6	c.G640C	p.D214H	ATGAATGATTTTT	.	119	29	137	0	G|1.000;T|0.000	0	0	0	0	0
DHH	50846	ucsc.edu;bcgsc.ca	37	12	49485010	49485010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DHH-710	NM_021044	exon2	c.C466A	p.R156S	TGTTGCGGTCGCG	.	256	184	268	3	.	0	0	0	0	0
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50195681	50195681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP5L-68	NM_001037806	exon6	c.A301T	p.S101C	GGGCACTCAGCAT	.	168	117	176	0	.	0	0	0	0	0
FAM186A	121006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	50746537	50746537	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM186A-68	NM_001145475	exon4	c.G4078C	p.G1360R	GGATCCCCAGTTC	.	454	374	271	2	.	0	0	0	0	0
KRT81	3887	broad.mit.edu	37	12	52681054	52681054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT81-90	NM_002281	exon7	c.C1079A	p.A360D	CTGAGGGCCGCCT	.	98	8	81	1	.	0	0	0	0	0
KRT6C	286887	bcgsc.ca	37	12	52863507	52863507	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT6C-114	NM_173086	exon7	c.C1371A	p.A457A	ATCCAGGGCCAGC	.	171	127	142	3	.	0	0	0	0	0
KRT74	121391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52967215	52967215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT74-92	NM_175053	exon1	c.C347T	p.T116I	TTGACAGTGACCT	.	103	49	122	0	.	0	0	0	0	0
KRT73	319101	ucsc.edu;bcgsc.ca	37	12	53012266	53012266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT73-157	NM_175068	exon1	c.G43T	p.G15W	AGCCCCCCTTGGC	.	182	125	173	3	.	0	0	0	0	0
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53494882	53494882	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP6-523	NM_002178	exon3	c.C538T	p.R180X	GTCTACCGAGGGG	.	125	84	135	0	.	0	0	0	0	0
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56487188	56487188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB3-1403	NM_001982	exon12	c.C1334T	p.S445F	TCCGATCCCTGAA	.	115	27	94	0	.	0	0	0	0	0
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65122777	65122777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNS-514	NM_002076	exon10	c.A1159T	p.N387Y	TCTTATTTAGGTC	.	128	72	123	0	.	0	0	0	0	0
GRIP1	23426	ucsc.edu;bcgsc.ca	37	12	66838367	66838367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIP1-494	NM_001178074	exon12	c.G1528C	p.A510P	TACCTGCAACATC	.	142	78	156	4	.	0	0	0	0	0
CAND1	55832	broad.mit.edu;mdanderson.org	37	12	67675711	67675711	+	Missense_Mutation	SNP	G	G	C	rs79653663	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAND1-516	NM_018448	exon2	c.G90C	p.L30F	TGATTTGATGACG	.	20	8	29	0	.	0	0	0	0	0
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71972663	71972663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon15	c.C1360G	p.H454D	GGAAATCATGCCT	.	99	61	116	0	.	0	0	0	0	0
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71978418	71978418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon18	c.C2628G	p.I876M	CAGCATCACTTAT	.	82	46	78	0	.	0	0	0	0	0
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72680494	72680494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRHDE-93	NM_013381	exon2	c.T813G	p.H271Q	TACACATGCCAGA	.	107	67	128	0	.	0	0	0	0	0
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85255765	85255765	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A15-93	NM_182767	exon12	c.C1839G	p.S613R	TGGATAGCTCAGA	.	42	18	97	0	.	0	0	0	0	0
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	98940166	98940166	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPO-93	NM_001032283	exon8	c.A1020G	p.V340V	AAGAGTAGAAAGG	.	105	61	118	0	.	0	0	0	0	0
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	101603553	101603553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A8-90	NM_145913	exon1	c.C74A	p.S25X	GCGGCCGAGATGA	.	94	68	57	0	.	0	0	0	0	0
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105424132	105424132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L2-91	NM_001034173	exon21	c.C2486A	p.P829H	ATAATAGGCCCAA	.	84	54	82	0	.	0	0	0	0	0
BTBD11	121551	broad.mit.edu;bcgsc.ca	37	12	108003971	108003971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTBD11-93	NM_001018072	exon5	c.G1648T	p.D550Y	AGGGCCGACGACT	.	120	92	120	2	.	0	0	0	0	0
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110231758	110231758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV4-94	NM_021625	exon9	c.G1561T	p.G521W	GGACCCCAGTGAA	.	241	182	251	0	.	0	0	0	0	0
PPP1CC	5501	bcgsc.ca	37	12	111160003	111160003	+	Silent	SNP	G	G	A	rs1973505	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1CC-1082	NM_002710	exon6	c.C819T	p.C273C	CTCTCCGCAATAA	.	129	8	148	2	G|0.770;A|0.230	0	0	0	0	0
ACAD10	80724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112130583	112130583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAD10-92	NM_001136538	exon2	c.A70C	p.T24P	AAACACACCCAGC	.	124	77	96	2	.	0	0	0	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112701980	112701980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001109662	exon17	c.C2224G	p.Q742E	GATTCTGAACTGC	.	103	21	109	0	.	0	0	0	0	0
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113304642	113304642	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPH3A-519	NM_001143854	exon7	c.G441A	p.R147R	GCAGAGGGAGGTG	.	133	88	123	0	.	0	0	0	0	0
TBX5	6910	ucsc.edu;bcgsc.ca	37	12	114793514	114793514	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX5-98	NM_000192	exon9	c.C1380A	p.S460S	GGCCACGGAGGTC	.	172	114	163	2	.	0	0	0	0	0
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	115112157	115112157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX3-93	NM_016569	exon7	c.G1583C	p.G528A	GCGCCCCCCATGG	.	103	49	57	0	.	0	0	0	0	0
RNFT2	84900	bcgsc.ca	37	12	117274029	117274029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001109903	exon10	c.G1142T	p.G381V	AAGCTGGTGACAT	.	69	51	78	2	.	0	0	0	0	0
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117768276	117768276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOS1-154	NM_000620	exon2	c.G599T	p.G200V	TTCTCCCCTCTGC	.	91	49	95	1	.	0	0	0	0	0
SUDS3	64426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118841234	118841234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUDS3-90	NM_022491	exon10	c.G715T	p.E239X	TCTCCTGAGCACT	.	50	34	41	0	.	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	119594333	119594333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM4-2	NM_194286	exon13	c.C1566A	p.P522P	TCGGCCCAGCCCC	.	205	119	176	1	.	0	0	0	0	0
CCDC60	160777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119926594	119926594	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC60-93	NM_178499	exon5	c.C480A	p.L160L	TGCTCTCCACTGG	.	300	218	236	0	.	0	0	0	0	0
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122413555	122413555	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR66-92	NM_144668	exon19	c.C2970T	p.V990V	TTTTGTCATGAGA	.	160	32	112	0	.	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124335466	124335466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH10-95	NM_207437	exon34	c.G5780T	p.R1927L	ACTCCCGCATGGG	.	98	74	79	0	.	0	0	0	0	0
TMEM132B	114795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	126135311	126135311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM132B-185	NM_052907	exon7	c.C1711A	p.R571S	ACAGTGCGTGTCC	.	257	182	241	2	.	0	0	0	0	0
POLE	5426	bcgsc.ca	37	12	133252041	133252041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLE-233	NM_006231	exon12	c.A1169G	p.Q390R	TCCTTCTGGAAGC	.	89	56	79	3	.	0	0	0	0	0
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25363494	25363494	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF17-228	NM_001184993	exon8	c.G792T	p.R264R	TATCCGGACTTTG	.	61	21	120	0	.	0	0	0	0	0
CDK8	1024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26923272	26923272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK8-1023	NM_001260	exon3	c.G268T	p.D90Y	CATGCTGATAGGA	.	93	33	127	0	.	0	0	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29599201	29599201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G396T	p.Q132H	CCTGCAGACCACG	.	86	34	153	0	.	0	0	0	0	0
MTUS2	23281	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29599429	29599429	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.A624G	p.L208L	GCCTCTATCCCTC	.	59	26	96	1	.	0	0	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29600623	29600623	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G1818T	p.G606G	CAGTGGGATCCCC	.	74	23	122	0	.	0	0	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30054476	30054476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon8	c.G3404C	p.S1135T	TGCTGAGCATCCG	.	112	40	180	0	.	0	0	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36699966	36699966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCLK1-826	NM_004734	exon2	c.G309T	p.Q103H	CACTCCCTGGGGC	.	111	31	155	0	.	0	0	0	0	0
SMAD9	4093	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	37427574	37427574	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMAD9-414	NM_001127217	exon6	c.C1242T	p.I414I	CATCCGGATAGTA	.	45	12	69	0	.	0	0	0	0	0
EXOSC8	11340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37582275	37582275	+	Missense_Mutation	SNP	G	G	T	rs200992929	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOSC8-91	NM_181503	exon9	c.G569T	p.R190I	ATATTAGAACTCA	.	45	6	107	0	G|1.000;A|0.000	0	0	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39264618	39264618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FREM2-100	NM_207361	exon1	c.G3137T	p.G1046V	GAATTGGTGGCAA	.	53	21	96	0	.	0	0	0	0	0
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41932560	41932560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAA16-90	NM_001110798	exon11	c.G1208T	p.S403I	TTGCTAGTACTCC	.	50	13	100	0	.	0	0	0	0	0
ENOX1	55068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43896519	43896519	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX1-92	NM_001242863	exon12	c.1261+1G>T	.	GCATTACCTGATT	.	73	28	188	0	.	0	0	0	0	0
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	45147767	45147767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSC22D1-90	NM_183422	exon1	c.C2444T	p.S815L	TGCTGTGAAACAA	.	86	28	171	0	.	0	0	0	0	0
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47297444	47297444	+	Missense_Mutation	SNP	G	G	T	rs188820612	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRCH1-91	NM_001164211	exon17	c.G1848T	p.E616D	GAAAGAGCTGGTG	.	30	11	62	0	G|0.999;A|0.000	0	0	0	0	0
HTR2A	3356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47469863	47469863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR2A-519	NM_000621	exon2	c.G179T	p.C60F	GAGAGGCACCCTT	.	129	36	190	0	.	0	0	0	0	0
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48830474	48830474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITM2B-90	NM_021999	exon3	c.G408T	p.E136D	CCCAGAGTTTGCA	.	53	12	82	0	.	0	0	0	0	0
ARL11	115761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50205070	50205070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL11-90	NM_138450	exon2	c.C487G	p.P163A	GGGCTGCCCGAGG	.	65	26	89	1	.	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417472	51417472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198989	exon1	c.C311T	p.P104L	TCCCGGGGGAAGG	.	31	16	0	0	.	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	9	7	0	0	G|0.789;A|0.211	0	0	0	0	0
PCDH8	5100	broad.mit.edu;bcgsc.ca	37	13	53420741	53420741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH8-153	NM_002590	exon1	c.C1831A	p.H611N	CCGGGTGCACCAG	.	102	28	84	1	.	0	0	0	0	0
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53422274	53422274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH8-153	NM_002590	exon1	c.C298A	p.P100T	ACTGCGGGGCCTG	.	68	21	20	0	.	0	0	0	0	0
OLFM4	10562	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624443	53624443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFM4-69	NM_006418	exon5	c.C1070A	p.T357K	CCAACACGATTGC	.	203	54	291	1	.	0	0	0	0	0
PCDH17	27253	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	58208469	58208469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon1	c.G1789T	p.V597L	CTGCAGGTGCCGC	.	107	32	122	1	.	0	0	0	0	0
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58208760	58208760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon1	c.C2080G	p.R694G	GTACCACGGGTGA	.	164	41	254	0	.	0	0	0	0	0
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58240856	58240856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon3	c.G2686T	p.D896Y	GACAGTGATCAGG	.	119	42	174	0	.	0	0	0	0	0
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67205483	67205483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH9-96	NM_203487	exon4	c.G3199T	p.G1067C	CTAGACCACTGTC	.	64	17	129	0	.	0	0	0	0	0
KLHL1	57626	bcgsc.ca	37	13	70681347	70681347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.485delG	p.G162fs	CCACATCCTTCAC	.	147	43	175	1	.	0	0	0	0	0
KLHL1	57626	hgsc.bcm.edu	37	13	70681348	70681349	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.483_484del	p.161_162del	CACATCCTTCACC	.	148	0	174	0	.	0	0	0	0	0
KLHL1	57626	bcgsc.ca	37	13	70681349	70681349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.A483T	p.E161D	ACATCCTTCACCT	.	147	43	175	1	.	0	0	0	0	0
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	75915278	75915278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D4-95	NM_014832	exon7	c.A1594G	p.I532V	CCCCGATGTGCAC	.	106	28	133	0	.	0	0	0	0	0
IRG1	730249	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	77531719	77531719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001258406	exon4	c.G1033T	p.V345F	ATCACTGTCCCCT	.	73	17	78	0	.	0	0	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	77870754	77870754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCBP2-236	NM_015057	exon2	c.A358G	p.K120E	TCACTTTTGATTT	.	13	4	22	0	.	0	0	0	0	0
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78492683	78492683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EDNRB-522	NM_001201397	exon2	c.G296C	p.G99A	GCGCGTCCGCACA	.	79	24	93	0	.	0	0	0	0	0
POU4F1	5457	bcgsc.ca;mdanderson.org	37	13	79176516	79176516	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU4F1-515	NM_006237	exon2	c.G294T	p.L98L	GTGCGCCAGAGGC	.	54	21	39	1	.	0	0	0	0	0
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	79191112	79191112	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF219-135	NM_024546	exon6	c.G784T	p.E262X	TCTCTTCACTTGA	.	73	18	107	0	.	0	0	0	0	0
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	84455469	84455469	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK1-94	NM_052910	exon1	c.C174A	p.S58S	AAACTGGGAAGTC	.	37	9	70	0	.	0	0	0	0	0
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	86368998	86368998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK6-137	NM_032229	exon2	c.C1646A	p.P549H	TGCCCGGGGGAAG	.	84	14	132	0	.	0	0	0	0	0
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	92051320	92051320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon1	c.C20A	p.P7H	CCTGGCCCGTGGG	.	115	26	100	0	.	0	0	0	0	0
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	92345810	92345810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon3	c.G695T	p.G232V	ATCTGGGCATTGA	.	70	21	125	0	.	0	0	0	0	0
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95121092	95121092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCT-94	NM_001129889	exon2	c.G503T	p.G168V	TTGGGCCCAAGCA	.	69	17	101	0	.	0	0	0	0	0
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96743551	96743551	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS6ST3-92	NM_153456	exon1	c.C435G	p.R145R	AGGGCGCGACGTG	.	122	38	183	0	.	0	0	0	0	0
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99948095	99948095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR183-522	NM_004951	exon2	c.C305G	p.A102G	CACAAGGCATCTC	.	129	37	218	2	.	0	0	0	0	0
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101736110	101736110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon31	c.A3535C	p.K1179Q	GGCTCTTCAGGTC	.	30	7	73	0	.	0	0	0	0	0
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101755576	101755576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon26	c.C3004A	p.Q1002K	TCATCTGGGGCAC	.	51	16	65	0	.	0	0	0	0	0
NALCN	259232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101757250	101757250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon23	c.A2631T	p.Q877H	CTAAAGTTGATGG	.	87	31	95	1	.	0	0	0	0	0
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102029346	102029346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon5	c.G437T	p.R146L	AGTGGCCGTGGAA	.	91	19	103	0	.	0	0	0	0	0
TPP2	7174	bcgsc.ca	37	13	103268776	103268776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPP2-92	NM_003291	exon4	c.G421T	p.V141F	GACCCTGTTCACA	.	46	4	48	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103388356	103388356	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C14691A	p.P4897P	CCTTTTGGGGAGT	.	68	20	83	0	.	0	0	0	0	0
CCDC168	643677	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103388670	103388670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C14377A	p.H4793N	GACTGTGCTCAGT	.	145	39	219	1	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103391132	103391132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C11915A	p.P3972H	GCAAAAGGTTTGC	.	24	4	65	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	103398334	103398334	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C4713T	p.G1571G	TATTAAGCCATCG	.	87	12	118	0	.	0	0	0	0	0
SLC10A2	6555	ucsc.edu;bcgsc.ca	37	13	103701772	103701772	+	Silent	SNP	C	C	T	rs201412654		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A2-94	NM_000452	exon5	c.G786A	p.T262T	CATCCCCGTTTCA	.	80	17	132	2	.	0	0	0	0	0
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	110850953	110850953	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A1-654	NM_001845	exon21	c.T1146C	p.G382G	AGGGGCACCAGCC	.	38	12	67	0	.	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	0	0	C|0.372;T|0.628	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113508734	113508734	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP11A-138	NM_032189	exon19	c.G2133C	p.L711L	GCTGCTGGAGCTG	.	100	23	115	0	.	0	0	0	0	0
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113839829	113839829	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCID2-90	NM_001258212	exon8	c.G675T	p.L225L	GTTCACCAGAAAC	.	42	9	55	0	.	0	0	0	0	0
GRK1	6011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114322346	114322346	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRK1-614	NM_002929	exon1	c.G645T	p.L215L	CAAGCTGTATGCC	.	130	36	164	1	.	0	0	0	0	0
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	14	19378109	19378109	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11H12-24	NM_001013354	exon1	c.G516C	p.L172L	GTTCCTGATCCCC	.	584	163	605	1	.	0	0	0	0	0
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20296018	20296018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4N2-71	NM_001004723	exon1	c.C411A	p.N137K	CATGAACCCTAGA	.	147	68	195	1	.	0	0	0	0	0
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20665906	20665906	+	Missense_Mutation	SNP	C	C	A	rs77997988		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11G2-70	NM_001005503	exon1	c.C412A	p.Q138K	TTCCTCCAGTTCT	.	67	38	107	0	.	0	0	0	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20845643	20845643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEP1-95	NM_007110	exon41	c.G5884T	p.G1962W	GAGCCCCCTGGGA	.	54	30	81	0	.	0	0	0	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23876252	23876252	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH6-94	NM_002471	exon3	c.G181C	p.A61P	TTTCAGCAATGAC	.	87	59	92	0	.	0	0	0	0	0
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24617561	24617561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF31-90	NM_017999	exon3	c.A434C	p.Q145P	AGCACCAGGTTGC	.	115	57	195	0	.	0	0	0	0	0
DTD2	112487	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	31926518	31926518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_080664	exon1	c.G82A	p.D28N	CCCCATCGGCTGG	.	304	75	75	1	.	0	0	0	0	0
EAPP	55837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35005309	35005309	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EAPP-91	NM_018453	exon2	c.C247T	p.L83L	TTCCCAGAGAGGA	.	25	17	36	0	.	0	0	0	0	0
FAM177A1	283635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35548204	35548204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM177A1-226	NM_173607	exon4	c.G478C	p.D160H	GCCATTGATGAAT	.	60	16	96	0	.	0	0	0	0	0
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356483	42356483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.G655C	p.A219P	CAGCGAGCTCAGG	.	102	57	121	0	.	0	0	0	0	0
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356830	42356830	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.T1002A	p.S334S	AAGATCTCTGGTG	.	78	37	130	0	.	0	0	0	0	0
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44974595	44974595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSCB-587	NM_032135	exon1	c.G1596T	p.E532D	AGGAGCCTCTATA	.	35	22	31	0	.	0	0	0	0	0
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45693590	45693590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MIS18BP1-90	NM_018353	exon11	c.G2200A	p.E734K	TTTGTTCCTTTTC	.	41	24	47	0	.	0	0	0	0	0
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45711445	45711445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MIS18BP1-90	NM_018353	exon4	c.G935C	p.G312A	GAAGTCCCTTCTG	.	57	28	64	0	.	0	0	0	0	0
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	47342647	47342647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDGA2-95	NM_001113498	exon14	c.G2741C	p.G914A	TGTTGTCCATACA	.	33	16	71	0	.	0	0	0	0	0
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51355545	51355545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABHD12B-153	NM_001206673	exon9	c.G704A	p.C235Y	AAGGATGCCCAGT	.	31	18	55	0	.	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52485862	52485862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon14	c.G2945T	p.W982L	ACGCACCAGCAGA	.	177	111	180	1	.	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52486816	52486816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon13	c.C2755A	p.Q919K	CGGGTTGACAACG	.	124	68	173	0	.	0	0	0	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58831980	58831980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4A-231	NM_002892	exon20	c.G3173C	p.C1058S	GTACCTGTAGTAT	.	81	52	119	0	.	0	0	0	0	0
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	60933637	60933637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C14orf39-94	NM_174978	exon10	c.C893A	p.A298E	ATACCTGCAACTC	.	17	10	17	0	.	0	0	0	0	0
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64691758	64691758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE2-164	NM_182914	exon115	c.G20511T	p.E6837D	GACAGAGAGCAGG	.	463	138	162	2	.	0	0	0	0	0
AKAP5	9495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64935226	64935226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP5-226	NM_004857	exon2	c.G114C	p.K38N	CTTCAAGAGAAGA	.	276	41	188	0	.	0	0	0	0	0
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65209938	65209938	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEKHG3-91	NM_015549	exon15	c.C3009G	p.S1003S	TGCCTCCCGCGAT	.	111	24	13	0	.	0	0	0	0	0
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68120200	68120200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VTI1B-90	NM_006370	exon5	c.G556T	p.E186X	AGTTTTCACTTGT	.	50	8	65	0	.	0	0	0	0	0
SLC8A3	6547	ucsc.edu;bcgsc.ca	37	14	70515629	70515629	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A3-225	NM_183002	exon7	c.C2262G	p.G754G	GGCCCAGCCGTGG	.	131	85	128	2	.	0	0	0	0	0
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634023	70634023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A3-225	NM_183002	exon2	c.G1117T	p.A373S	CTGCTGCATGTTT	.	131	87	169	0	.	0	0	0	0	0
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70926120	70926120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM21-92	NM_003813	exon2	c.T1904A	p.L635H	TCTGCCTTCCTGA	.	397	180	435	1	.	0	0	0	0	0
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70990144	70990144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM20-226	NM_003814	exon2	c.G1481T	p.G494V	GCAGCCCCAGGAT	.	120	43	97	0	.	0	0	0	0	0
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72128143	72128143	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L1-156	NM_015556	exon7	c.C2214A	p.I738I	CGTCATCGTCAGG	.	52	35	76	1	.	0	0	0	0	0
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73711367	73711367	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	140	85	122	0	.	0	0	0	0	0
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73750814	73750814	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMB-1062	NM_001005744	exon10	c.G924A	p.K308K	ATCAGTCTTCCTC	.	187	41	195	0	.	0	0	0	0	0
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75018960	75018960	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LTBP2-92	NM_000428	exon6	c.C1329T	p.S443S	GGGGCGGGACCCC	.	168	122	134	2	.	0	0	0	0	0
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76149969	76149969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL5-92	NM_015072	exon5	c.C341T	p.S114F	CCCTCTCTGAAGC	.	122	28	121	0	.	0	0	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF2BPL-90	NM_024496	exon1	c.369_374del	p.123_125del	TGTTGTTGCTGCT	.	18	9	23	0	CTG|1.000;|0.000	0	0	0	0	0
NRXN3	9369	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	79175583	79175583	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN3-587	NM_004796	exon4	c.C126T	p.I42I	TGACATCCGTCTG	.	62	36	89	1	.	0	0	0	0	0
PTPN21	11099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88971713	88971713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN21-230	NM_007039	exon5	c.G451T	p.D151Y	CAAAATCCGCTAT	.	123	8	153	0	.	0	0	0	0	0
SERPINA4	5267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95030148	95030148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA4-230	NM_006215	exon2	c.C329A	p.T110N	ACCTCACCGAGCT	.	77	35	72	1	.	0	0	0	0	0
SERPINA4	5267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95030149	95030149	+	Silent	SNP	C	C	G	rs141308668	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA4-230	NM_006215	exon2	c.C330G	p.T110T	CCTCACCGAGCTG	.	78	36	72	0	C|1.000;T|0.000	0	0	0	0	0
SERPINA5	5104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95054239	95054239	+	Silent	SNP	G	G	A	rs146244413	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA5-652	NM_000624	exon3	c.G540A	p.T180T	GCAAACGAAGGGC	.	353	233	403	1	G|0.999;A|0.001	0	0	0	0	0
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95916424	95916424	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152592	exon7	c.G1293A	p.A431A	CAGCCTCGCGCTC	.	179	36	120	0	.	0	0	0	0	0
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96813577	96813577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATG2B-93	NM_018036	exon2	c.G264T	p.Q88H	ATTATCCTGCAGT	.	71	46	97	0	.	0	0	0	0	0
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	97029218	97029218	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPOLA-68	NM_032632	exon21	c.G2130C	p.L710L	TTCTCTGTTGGCC	.	25	13	38	0	.	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	29	4	1	0	T|0.478;C|0.522	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101351118	101351118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RTL1-46	NM_001134888	exon1	c.A8G	p.E3G	GAGGGTTCTATCA	.	100	66	99	0	.	0	0	0	0	0
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102028262	102028262	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIO3-494	.	.	.	.	TCTGCCCGACGGC	.	114	39	76	0	.	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOC3L4-23	NM_001077594	exon2	c.A669G	p.E223E	GGAGGAAGCCCAC	.	7	7	0	0	A|0.486;G|0.514	0	0	0	0	0
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103931918	103931918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MARK3-360	NM_001128919	exon8	c.G565A	p.D189N	GATGCCGATATGA	.	55	13	56	0	.	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	6	6	0	0	G|0.327;T|0.673	0	0	0	0	0
TDRD9	122402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104470600	104470600	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD9-70	NM_153046	exon14	c.G1509T	p.G503G	TAGAGGGTACTGT	.	135	107	111	2	.	0	0	0	0	0
ASPG	374569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104561948	104561948	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080464	exon4	c.C384T	p.F128F	GTCCTTCATGCTG	.	145	28	140	1	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104641745	104641745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.G2620A	p.G874R	GCCCGAGGGGGCC	.	120	26	22	0	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104641876	104641876	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.C2751T	p.A917A	CAAGGCCATTGTC	.	62	11	32	0	.	0	0	0	0	0
AHNAK2	113146	broad.mit.edu;bcgsc.ca	37	14	105418991	105418991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHNAK2-47	NM_138420	exon7	c.G2797T	p.G933C	GGGGGCCCTTGAG	.	226	146	204	2	.	0	0	0	0	0
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	22368578	22368578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.G3T	p.M1I	AGAAATGGAAACT	.	81	11	99	0	.	0	0	0	0	0
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22368613	22368613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.T38C	p.V13A	AATTTGTTCTCAC	.	133	34	176	0	.	0	0	0	0	0
OR4M2	390538	ucsc.edu;bcgsc.ca	37	15	22369084	22369084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.G509T	p.G170V	TCTGTGGGCCCAA	.	576	118	610	3	.	0	0	0	0	0
OR4N4	283694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22382866	22382866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4N4-73	NM_001005241	exon1	c.T394G	p.C132G	CTGCACTGTTCAA	.	271	78	290	0	.	0	0	0	0	0
OR4N3P	390539	hgsc.bcm.edu;bcgsc.ca	37	15	22414205	22414205	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TATATTCTTCATG	.	298	65	262	0	.	0	0	0	0	0
GOLGA6L1	283767	broad.mit.edu;mdanderson.org	37	15	22743430	22743430	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001413	exon8	c.G1815A	p.E605E	GCAGGAGGAGATG	.	22	6	11	0	.	0	0	0	0	0
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22855078	22855078	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TUBGCP5-91	NM_052903	exon13	c.G1539T	p.T513T	TTACACGTTATAT	.	273	32	177	0	.	0	0	0	0	0
MAGEL2	54551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23889842	23889842	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_019066	exon1	c.C3048A	p.P1016P	AGACAAGGGCTGT	.	175	30	171	1	.	0	0	0	0	0
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	26866612	26866612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRB3-518	NM_021912	exon4	c.C310G	p.L104V	GGTTGAGAGGGAT	.	74	10	85	0	.	0	0	0	0	0
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27182468	27182468	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRA5-91	NM_001165037	exon8	c.C717A	p.T239T	CAGCACCAGCACA	.	154	86	118	0	.	0	0	0	0	0
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27572125	27572125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001270873	exon4	c.C440A	p.P147H	CCACACCCAATCA	.	106	46	116	0	.	0	0	0	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29346205	29346205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APBA2-90	NM_005503	exon3	c.G118T	p.G40C	TTGGAGGGCTATG	.	289	74	234	0	.	0	0	0	0	0
APBA2	321	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29400511	29400511	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APBA2-90	NM_005503	exon12	c.C1956T	p.V652V	CATTGTCAGCTGT	.	123	16	120	1	.	0	0	0	0	0
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31295069	31295069	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM1-94	NM_001252020	exon27	c.G3885T	p.T1295T	AAGATACGTTGCC	.	68	36	78	0	.	0	0	0	0	0
OTUD7A	161725	ucsc.edu;bcgsc.ca	37	15	31776739	31776739	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD7A-502	NM_130901	exon11	c.G1539C	p.V513V	GTTGGCCACGGAG	.	66	24	62	2	.	0	0	0	0	0
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33300216	33300216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN1-23	NM_001103184	exon3	c.A1553T	p.Q518L	CATACCTGCAGGT	.	65	26	43	0	.	0	0	0	0	0
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33944994	33944994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR3-520	NM_001243996	exon32	c.C4218A	p.N1406K	GAGCAACGTGGAC	.	316	66	330	2	.	0	0	0	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34111987	34111987	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR3-520	NM_001036	exon77	c.C10737A	p.S3579S	CACCTCCTATTCC	.	103	26	90	0	.	0	0	0	0	0
CHRM5	1133	ucsc.edu;bcgsc.ca	37	15	34355202	34355202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRM5-91	NM_012125	exon3	c.G284T	p.R95L	TGGGACGCTGGGC	.	190	78	181	2	.	0	0	0	0	0
GPR176	11245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40094026	40094026	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR176-519	NM_007223	exon3	c.G855T	p.L285L	GACGACCAGGGTG	.	149	40	159	0	.	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	19	16	1	0	C|0.941;T|0.059	0	0	0	0	0
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41272438	41272438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INO80-72	NM_017553	exon36	c.C4654T	p.P1552S	CAGAGGGGTTGGT	.	70	16	67	0	.	0	0	0	0	0
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42116197	42116197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAPKBP1-589	NM_001128608	exon30	c.C4169T	p.P1390L	CACCCCCTGAGAA	.	41	8	41	0	.	0	0	0	0	0
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42158294	42158294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTBN5-91	NM_016642	exon38	c.G6659T	p.R2220L	AAGTTCCGCCTGT	.	68	11	56	0	.	0	0	0	0	0
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42364533	42364533	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4D-136	NM_178034	exon14	c.C1375T	p.L459L	GGGGCAGAGGGTT	.	82	19	69	0	.	0	0	0	0	0
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42503948	42503948	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM87A-91	NM_015497	exon21	c.1627-1G>C	.	TCGTTCCTAGGGA	.	45	10	50	0	.	0	0	0	0	0
TTBK2	146057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43120176	43120176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTBK2-338	NM_173500	exon6	c.G487T	p.D163Y	CAAAATCAAGCAT	.	235	96	230	1	.	0	0	0	0	0
DUOX2	50506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45405235	45405235	+	Missense_Mutation	SNP	C	C	A	rs200434528		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUOX2-95	NM_014080	exon3	c.G110T	p.R37L	TCATAGCGCTGCA	.	168	62	138	2	C|0.999;A|0.001	0	0	0	0	0
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45409733	45409733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUOXA1-227	NM_144565	exon11	c.C1432T	p.R478C	TGTGGCGGGAGGT	.	110	52	140	0	.	0	0	0	0	0
SLC24A5	283652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48431348	48431348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC24A5-90	NM_205850	exon7	c.C1054A	p.L352M	TATATCCTGGTTT	.	46	20	70	0	.	0	0	0	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48802361	48802361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN1-92	NM_000138	exon14	c.G1594T	p.D532Y	ACTCATCAATGTC	.	88	16	143	0	.	0	0	0	0	0
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49135625	49135625	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHC4-95	NM_203349	exon10	c.G1464T	p.G488G	TGGGCTCCCCAGT	.	158	32	152	0	.	0	0	0	0	0
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49926822	49926822	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTWD1-226	NM_001144955	exon4	c.498delC	p.G166fs	TAGAGGCAAAAAT	.	96	21	162	0	.	0	0	0	0	0
ATP8B4	79895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50212566	50212566	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP8B4-140	NM_024837	exon18	c.C1800T	p.Y600Y	GTCTCTGTATGCG	.	116	32	101	0	.	0	0	0	0	0
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50897135	50897135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon21	c.G2916T	p.W972C	CACATACCAAAAT	.	134	47	182	0	.	0	0	0	0	0
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50941083	50941083	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon5	c.123-1G>T	.	AAACACCTAAAAG	.	19	5	23	0	.	0	0	0	0	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54305438	54305438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC13C-51	NM_001080534	exon1	c.A338C	p.N113T	GTGATAATGAGGA	.	85	31	124	0	.	0	0	0	0	0
C2CD4A	145741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62359893	62359893	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C2CD4A-68	NM_207322	exon2	c.C81A	p.R27R	GGCCCGCGGAGCC	.	77	38	34	0	.	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63031744	63031744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLN2-573	NM_015059	exon28	c.G3885T	p.Q1295H	AGCTCAGGTGGGT	.	155	74	128	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	9	9	0	0	A|0.226;C|0.774	0	0	0	0	0
VWA9	81556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65884016	65884016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001207058	exon9	c.A986T	p.N329I	ATGAGGTTTGATT	.	107	44	96	0	.	0	0	0	0	0
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69347714	69347714	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX5-136	NM_024505	exon15	c.G2040T	p.L680L	TGCACTGGGCAAG	.	161	32	199	0	.	0	0	0	0	0
PKM	5315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72502105	72502105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001206796	exon6	c.G696T	p.W232C	GTCCAGCCACAGG	.	124	55	154	0	.	0	0	0	0	0
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78290603	78290603	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D2B-136	NM_015079	exon13	c.G2739A	p.W913X	TCAGCTCCAGCCG	.	210	41	233	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS7-226	NM_014272	exon24	c.G5023T	p.A1675S	AGGGGGCGCCGTG	.	96	28	1	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	109	9	25	0	.	0	0	0	0	0
RASGRF1	5923	broad.mit.edu;bcgsc.ca	37	15	79290536	79290536	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGRF1-662	NM_002891	exon20	c.C2916T	p.N972N	CTCATCGTTGGTC	.	244	8	238	0	.	0	0	0	0	0
ANKRD34C	390616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79585642	79585642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146341	exon2	c.A16T	p.T6S	GATGACACTGAAT	.	191	80	190	1	.	0	0	0	0	0
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749156	79749156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1024-183	NM_015206	exon2	c.G667C	p.E223Q	GAAAACGAGTCCA	.	158	41	148	0	.	0	0	0	0	0
C15orf37	283687	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80216464	80216464	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	GGTCCGGATCTCG	.	73	33	86	0	.	0	0	0	0	0
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80767372	80767372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon5	c.G430C	p.E144Q	ATCCTTGAAGCAG	.	47	20	67	0	.	0	0	0	0	0
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80800576	80800576	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon6	c.G702A	p.R234R	CTCGCGGCGGTCT	.	128	65	137	0	.	0	0	0	0	0
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	80869292	80869292	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon15	c.C1599A	p.S533S	ACACTCCGGGAAG	.	128	22	121	0	.	0	0	0	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81218065	81218065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon18	c.C2389A	p.R797S	TGGCTGCGCGGCG	.	131	61	100	0	.	0	0	0	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81224296	81224296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon21	c.C2709A	p.T903T	GCACACCAGCGCC	.	55	20	86	0	.	0	0	0	0	0
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82574573	82574573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM154B-70	NM_001008226	exon3	c.C367T	p.P123S	TTTGTTCCTCAGG	.	140	15	134	0	.	0	0	0	0	0
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86124843	86124843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP13-258	NM_007200	exon7	c.G3544A	p.E1182K	GACGATGAAGCAC	.	139	22	152	0	.	0	0	0	0	0
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86312878	86312878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL25-92	NM_022480	exon2	c.G164T	p.R55L	AAGGCACGGTCGC	.	213	50	210	0	.	0	0	0	0	0
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86697774	86697774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon3	c.C238A	p.R80S	GCTCTGCGTGTGT	.	94	15	87	0	.	0	0	0	0	0
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86790916	86790916	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon6	c.A403T	p.R135X	GGCCGCAGAGCAG	.	176	48	183	1	.	0	0	0	0	0
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86800211	86800211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon7	c.G725T	p.G242V	TCCCCGGGTGCAT	.	117	29	102	0	.	0	0	0	0	0
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88423642	88423642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTRK3-3538	NM_001012338	exon19	c.G2193T	p.M731I	GGGGAGCATGGTG	.	90	49	101	0	.	0	0	0	0	0
NTRK3	4916	broad.mit.edu	37	15	88678626	88678626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTRK3-3538	NM_001243101	exon10	c.C910A	p.P304T	GTGGGGGATCTGT	.	45	8	47	1	.	0	0	0	0	0
ACAN	176	bcgsc.ca	37	15	89386842	89386842	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAN-25	NM_001135	exon6	c.C1014A	p.P338P	CTACCCCGACCCC	.	133	57	102	3	.	0	0	0	0	0
MIR1469	100302258	bcgsc.ca;mdanderson.org	37	15	96876498	96876498	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CGGCGCGGGGCGC	.	83	21	19	0	.	0	0	0	0	0
CERS3	204219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100996194	100996194	+	Nonsense_Mutation	SNP	G	G	T	rs139946861	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_178842	exon12	c.C903A	p.Y301X	GAAGATGTATGAA	.	62	12	64	0	G|0.997;A|0.003	0	0	0	0	0
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101565124	101565124	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRK1-602	NM_024652	exon16	c.G2184A	p.L728L	GGCGCTGGGGGAG	.	101	46	107	0	.	0	0	0	0	0
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101922386	101922386	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCSK6-46	.	.	.	.	TGCGTCCACCAAA	.	90	29	106	0	.	0	0	0	0	0
ARHGDIG	398	broad.mit.edu	37	16	332758	332758	+	Missense_Mutation	SNP	A	A	G	rs143125556	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGDIG-90	NM_001176	exon6	c.A622G	p.T208A	GACAGGACGCACC	.	87	3	70	0	A|0.999;G|0.001	0	0	0	0	0
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	335179	335179	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon5	c.G774C	p.L258L	GCGCCTGGTCACG	.	129	23	99	0	.	0	0	0	0	0
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	335541	335541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon7	c.T957A	p.N319K	CGACAATGAGCAC	.	172	33	164	0	.	0	0	0	0	0
SOLH	6650	broad.mit.edu	37	16	602138	602138	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOLH-523	NM_005632	exon10	c.G2433T	p.A811A	CAGCGCGCCCGTG	.	245	61	47	1	.	0	0	0	0	0
C16orf13	84326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	684529	684529	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf13-22	NM_001040160	exon5	c.C615G	p.P205P	GGCCTAGGGAGGC	.	127	35	136	0	.	0	0	0	0	0
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1551665	1551665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TELO2-90	NM_016111	exon11	c.A1363G	p.T455A	TAAAGCACGTCCC	.	68	29	48	0	.	0	0	0	0	0
CRAMP1L	57585	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	1706050	1706050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.G1292T	p.R431L	GCGGCCGGTGCAA	.	146	66	54	0	.	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049527	2049527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF598-432	NM_178167	exon11	c.C2023T	p.P675S	GGCAGGGGCCGCC	.	26	21	0	0	.	0	0	0	0	0
SLC9A3R2	9351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2079600	2079600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A3R2-23	NM_004785	exon2	c.G231T	p.K77N	GATCAAGGCTGTG	.	151	25	124	0	.	0	0	0	0	0
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2284352	2284352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	E4F1-187	NM_004424	exon10	c.A1556G	p.Y519C	GGCCCTACCCTTG	.	355	156	262	0	.	0	0	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2816143	2816143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.A5614T	p.T1872S	CCAGCCACTCACC	.	161	73	155	0	.	0	0	0	0	0
SRRM2	23524	hgsc.bcm.edu	37	16	2817254	2817256	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TAG	TAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.6725_6727del	p.2242_2243del	TGAACCTAGCCAG	.	106	0	115	0	.	0	0	0	0	0
SRRM2	23524	bcgsc.ca	37	16	2817256	2817256	+	Missense_Mutation	SNP	G	G	A	rs139489601	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.G6727A	p.A2243T	AACCTAGCCAGCG	.	108	21	116	2	G|1.000;C|0.000	0	0	0	0	0
MEFV	4210	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3296527	3296527	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEFV-228	NM_000243	exon6	c.C1608T	p.H536H	GTACCTGTGCAAG	.	70	21	61	1	.	0	0	0	0	0
C16orf90	646174	hgsc.bcm.edu;mdanderson.org	37	16	3544850	3544850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080524	exon2	c.C74A	p.P25H	TGGCCGGGGCGTC	.	50	22	8	0	.	0	0	0	0	0
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4164589	4164589	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY9-139	NM_001116	exon2	c.G855T	p.G285G	GAGCAGCCCCCTG	.	87	36	78	0	.	0	0	0	0	0
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11000690	11000690	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIITA-226	NM_000246	exon11	c.T1341G	p.F447L	CGACTTTGTCTTC	.	83	19	62	0	.	0	0	0	0	0
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15732947	15732947	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0430-90	NM_014647	exon2	c.G144C	p.T48T	AGTTACCGTTTGG	.	86	36	139	0	.	0	0	0	0	0
XYLT1	64131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	17228440	17228440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XYLT1-94	NM_022166	exon9	c.C1917G	p.D639E	GATGCCGTCAGGC	.	96	18	78	1	.	0	0	0	0	0
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19628040	19628040	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf62-69	NM_020314	exon14	c.G1401T	p.V467V	GCTGGTGGTCCAA	.	162	45	140	0	.	0	0	0	0	0
GP2	2813	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20327304	20327304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001007240	exon10	c.T1484G	p.L495R	AAATCTAGAACCC	.	116	57	120	1	.	0	0	0	0	0
GP2	2813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20331586	20331586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001007240	exon6	c.G865T	p.E289X	TTACCTCCAGAAT	.	93	27	110	0	.	0	0	0	0	0
GP2	2813	bcgsc.ca	37	16	20335325	20335325	+	Silent	SNP	G	G	A	rs12930599	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001502	exon3	c.C348T	p.D116D	GGGAGCGTCTGTC	.	192	7	215	1	G|0.865;A|0.135	0	0	0	0	0
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20476935	20476935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSM2A-91	NM_001010845	exon4	c.C274T	p.Q92X	AGCCAGCAGGCAG	.	443	57	400	0	.	0	0	0	0	0
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	22825984	22825984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon1	c.G53A	p.R18H	GGGCGCGCAGGCT	.	85	51	14	0	.	0	0	0	0	0
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22926624	22926624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon2	c.C845A	p.A282D	ACCCGGCCGGCGA	.	138	68	138	0	.	0	0	0	0	0
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23716290	23716290	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERN2-322	NM_033266	exon8	c.C912G	p.L304L	GAGGGCGAGGAAA	.	212	91	73	0	.	0	0	0	0	0
CACNG3	10368	broad.mit.edu;bcgsc.ca	37	16	24373179	24373179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNG3-90	NM_006539	exon4	c.943delG	p.V315fs	ACGCCCGTCTGAA	.	28	9	32	0	.	0	0	0	0	0
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24582830	24582830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBBP6-230	NM_006910	exon18	c.G4443T	p.E1481D	CAGAGAGTATTCA	.	78	19	81	0	.	0	0	0	0	0
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24909414	24909414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A11-92	NM_052944	exon10	c.C990G	p.S330R	GGTCAGCCGCATC	.	68	16	51	0	.	0	0	0	0	0
C16orf82	162083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27078584	27078584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145545	exon1	c.G268T	p.G90W	AGCAGCGGGTACG	.	64	19	66	0	.	0	0	0	0	0
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27709688	27709688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0556-141	NM_015202	exon9	c.G980T	p.R327L	CAACCCGCAAAAC	.	79	16	59	0	.	0	0	0	0	0
SH2B1	25970	broad.mit.edu	37	16	28878275	28878275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2B1-92	NM_001145796	exon2	c.G860T	p.W287L	CTCAGTGGCAGAA	.	16	3	23	0	.	0	0	0	0	0
NFATC2IP	84901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28970367	28970367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFATC2IP-91	NM_032815	exon7	c.G1047T	p.Q349H	GCTCCAGCTCCGG	.	254	92	239	0	.	0	0	0	0	0
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30035165	30035165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf92-68	NM_001109660	exon2	c.C248A	p.A83D	CTGTGGCCCAGTT	.	137	72	119	0	.	0	0	0	0	0
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30958250	30958250	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL19-661	NM_001099784	exon10	c.G1887T	p.L629L	GACCCTGGTGCAC	.	155	39	104	1	.	0	0	0	0	0
TRIM72	493829	hgsc.bcm.edu	37	16	31235631	31235631	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM72-44	NM_001008274	exon7	c.A989T	p.K330M	TCGACAAGGCGGT	.	60	12	0	0	.	0	0	0	0	0
ITGAX	3687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31374306	31374306	+	Silent	SNP	C	C	T	rs147598964	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGAX-229	NM_000887	exon13	c.C1410T	p.D470D	CAGCGACGGCAGC	.	201	37	170	0	C|0.998;T|0.002	0	0	0	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31477303	31477303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMC5-24	NM_001105247	exon5	c.G1997T	p.R666L	TCTGCCGGTGAGT	.	61	28	73	0	.	0	0	0	0	0
SHCBP1	79801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46637518	46637518	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHCBP1-154	NM_024745	exon8	c.T1146G	p.V382V	AACAATAACAGTG	.	334	148	282	0	.	0	0	0	0	0
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48134826	48134826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon21	c.G2995T	p.G999C	TGATGCCCAGGCC	.	203	78	188	0	.	0	0	0	0	0
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48173122	48173122	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon5	c.C783A	p.P261P	AGCTGTGGGCCCC	.	116	22	108	0	.	0	0	0	0	0
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48234290	48234290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC11-95	NM_033151	exon14	c.C1979T	p.P660L	GACAGGGGGTCGT	.	150	78	135	1	.	0	0	0	0	0
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50744557	50744557	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOD2-231	NM_022162	exon4	c.G735T	p.T245T	AGAGACGCTCTGC	.	129	28	140	0	.	0	0	0	0	0
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51173113	51173113	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL1-98	NM_002968	exon2	c.G3020C	p.G1007A	GTTTTGCCACAAA	.	120	23	145	0	.	0	0	0	0	0
SALL1	6299	bcgsc.ca	37	16	51175720	51175720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL1-98	NM_002968	exon2	c.G413C	p.G138A	GAAGTGCCGCTGC	.	110	47	70	3	.	0	0	0	0	0
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	55360430	55360430	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon2	c.G228T	p.A76A	CTATGCGGCCGCT	.	126	56	86	0	.	0	0	0	0	0
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55362936	55362936	+	Missense_Mutation	SNP	C	C	A	rs200996745	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon5	c.C1046A	p.P349Q	AGAAACCGCGCAT	.	156	31	127	0	C|0.999;T|0.000	0	0	0	0	0
CES5A	221223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55880508	55880508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CES5A-94	NM_001190158	exon14	c.G1670T	p.G557V	CTCTGTCCGAGGC	.	141	73	167	0	.	0	0	0	0	0
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56782300	56782300	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUP93-205	NM_014669	exon2	c.C141G	p.T47T	CCGTACCCTAACA	.	77	32	93	0	.	0	0	0	0	0
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56936360	56936360	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC12A3-155	NM_000339	exon24	c.G2823A	p.E941E	CAACGAGATGCGG	.	157	28	146	0	.	0	0	0	0	0
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57732900	57732900	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon3	c.C342A	p.P114P	CGTGCCCCTCTTC	.	114	24	109	0	.	0	0	0	0	0
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57735916	57735916	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon5	c.G573C	p.T191T	CAGTACGCTGCTC	.	195	25	189	0	.	0	0	0	0	0
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58713931	58713931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC38A7-69	NM_018231	exon3	c.G100T	p.A34S	TGGGGGCTGTGTC	.	80	32	85	0	.	0	0	0	0	0
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58768113	58768113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOT2-91	NM_002080	exon1	c.G20T	p.G7V	ACGCGGCCGGAGT	.	127	44	15	0	.	0	0	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61851398	61851398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH8-161	NM_001796	exon7	c.C1262G	p.T421S	CTGGAAGTGATAT	.	134	53	146	0	.	0	0	0	0	0
TRADD	8717	hgsc.bcm.edu	37	16	67189373	67189373	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRADD-659	NM_003789	exon3	c.G336T	p.V112V	CAGCGGCACCGAG	.	22	13	3	0	.	0	0	0	0	0
DPEP3	64180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68012505	68012505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPEP3-71	NM_001129758	exon3	c.C514A	p.Q172K	GGGACTGGCATGA	.	171	37	136	1	.	0	0	0	0	0
DPEP3	64180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68012506	68012506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPEP3-71	NM_001129758	exon3	c.C513A	p.C171X	GGACTGGCATGAG	.	170	37	136	0	.	0	0	0	0	0
SMPD3	55512	bcgsc.ca	37	16	68398924	68398924	+	Silent	SNP	C	C	T	rs1868158	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMPD3-91	NM_018667	exon4	c.G1395A	p.P465P	ACCTTGCGGGGCA	.	189	6	136	0	C|0.368;T|0.632	0	0	0	0	0
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70182454	70182454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDPR-135	NM_017990	exon17	c.G2050A	p.E684K	CCCATAGAGGTGA	.	405	56	342	0	.	0	0	0	0	0
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70512517	70512517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FUK-91	NM_145059	exon22	c.C2893T	p.R965W	CTGGTACGGCAAA	.	65	29	49	0	.	0	0	0	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71988174	71988174	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKD1L3-68	.	.	.	.	AACTTTTCCACAA	.	113	26	97	0	.	0	0	0	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72032247	72032247	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKD1L3-68	.	.	.	.	GGACAGGTAGGTG	.	94	35	115	0	.	0	0	0	0	0
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72144969	72144969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DHX38-227	NM_014003	exon26	c.A3592T	p.S1198C	CTGGGCAGTGTCA	.	104	17	36	0	.	0	0	0	0	0
ZFHX3	463	ucsc.edu;bcgsc.ca	37	16	72993272	72993272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX3-72	NM_006885	exon2	c.A773T	p.K258I	ACATCTTTGGATA	.	116	60	135	2	.	0	0	0	0	0
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	75637040	75637040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT1-92	NM_012091	exon10	c.G1319T	p.R440I	AATGATCTGAAGA	.	111	13	125	0	.	0	0	0	0	0
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76486501	76486501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon7	c.G949T	p.E317X	GGAGAGGAGGAGG	.	64	21	92	0	.	0	0	0	0	0
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76555117	76555117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon15	c.G2227C	p.D743H	AGCGCGGATGTAT	.	34	15	60	0	.	0	0	0	0	0
VAT1L	57687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77913114	77913114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAT1L-90	NM_020927	exon6	c.C875A	p.A292E	GCTTTGCAAAATC	.	161	30	252	1	.	0	0	0	0	0
C16orf74	404550	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85743810	85743810	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf74-22	NM_206967	exon3	c.C132A	p.T44T	CGTGGGGGTGGGG	.	79	29	58	1	.	0	0	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87445728	87445728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC14-154	NM_015144	exon12	c.A2188T	p.S730C	TGGAGCTGGGGGC	.	59	11	58	0	.	0	0	0	0	0
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88494585	88494585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon1	c.C707G	p.P236R	CCTGGCCTCCCGC	.	80	27	129	0	.	0	0	0	0	0
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88495049	88495049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon1	c.C1171A	p.L391M	GATGGGCTGGGGA	.	94	31	79	0	.	0	0	0	0	0
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88502418	88502418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon2	c.A8456T	p.K2819M	GTGCCAAGGATCC	.	42	12	49	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	26	0	1	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095597	90095597	+	Missense_Mutation	SNP	T	T	C	rs61118444	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52V	AGGCTATGGGGCA	.	122	23	70	2	T|0.361;C|0.639	0	0	0	0	0
VPS53	55275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	505108	505108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS53-90	NM_001128159	exon12	c.C1145T	p.T382I	GGATTGGTAGATG	.	79	22	79	0	.	0	0	0	0	0
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3101229	3101229	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1A2-70	NM_012352	exon1	c.G417T	p.R139R	TCCACGGTCTTGT	.	214	46	232	0	.	0	0	0	0	0
TRPV1	7442	broad.mit.edu;bcgsc.ca	37	17	3470249	3470249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV1-23	NM_018727	exon16	c.G2380T	p.V794F	GGGGGACCAGGGC	.	87	36	76	2	.	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3628702	3628702	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSG2-297	NM_031965	exon1	c.G1473T	p.G491G	GATTGGGGAAGGG	.	146	27	163	0	.	0	0	0	0	0
ITGAE	3682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3655152	3655152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGAE-161	NM_002208	exon15	c.T1685C	p.L562S	CGTGCCAAGGAGA	.	204	54	221	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3955316	3955316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon35	c.A5549T	p.D1850V	AAGTCATCGCAAA	.	110	23	128	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;bcgsc.ca	37	17	3959640	3959640	+	Splice_Site	SNP	C	C	A	rs60052193	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon34	c.5166-1G>T	.	CATTGGCTGAAAG	.	56	10	55	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3973982	3973982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon26	c.A4071T	p.K1357N	ACCATATTTTTGC	.	56	26	56	0	.	0	0	0	0	0
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4351540	4351540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPNS3-153	NM_182538	exon6	c.G712T	p.G238W	GGGGAGGGGGCCG	.	98	42	65	0	.	0	0	0	0	0
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4453405	4453405	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.1267delG	p.V423fs	AGTCAACCAAGGA	.	163	41	215	0	.	0	0	0	0	0
MYBBP1A	10514	hgsc.bcm.edu	37	17	4453405	4453406	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.1266_1267del	p.422_423del	AGTCAACCAAGGA	.	163	0	215	0	.	0	0	0	0	0
MYBBP1A	10514	bcgsc.ca	37	17	4453406	4453406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.G1266T	p.L422F	GTCAACCAAGGAG	.	161	41	214	0	.	0	0	0	0	0
KIF1C	10749	ucsc.edu;bcgsc.ca	37	17	4926821	4926821	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1C-92	NM_006612	exon23	c.C2687A	p.S896X	AAGGATCAGAGGC	.	230	51	123	2	.	0	0	0	0	0
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5436275	5436275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP1-274	NM_001033053	exon11	c.G3175T	p.E1059X	AGAGTTCCACCGG	.	109	41	108	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP53-70225	NM_000546	exon5	c.G517T	p.V173L	GCCTCACAACCTC	.	176	72	159	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP53-70225	NM_000546	exon5	c.G396C	p.K132N	AAACATCTTGTTG	.	89	18	80	0	.	0	0	0	0	0
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8053364	8053364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER1-723	NM_002616	exon4	c.G454C	p.E152Q	GGCGCTCTGGCGG	.	99	28	138	0	.	0	0	0	0	0
AURKB	9212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8110524	8110524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKB-1508	NM_004217	exon5	c.G368A	p.R123H	TCTCTGCGCAGCT	.	93	24	75	0	.	0	0	0	0	0
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8741937	8741937	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	GATCTCGCTCGAC	.	75	29	76	0	.	0	0	0	0	0
USP43	124739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9631601	9631601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP43-637	NM_153210	exon15	c.G2666T	p.G889V	CAGCCGGGGTGCC	.	266	112	252	0	.	0	0	0	0	0
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9792935	9792935	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLP2R-524	NM_004246	exon13	c.C1575A	p.P525P	CTGGCCCCGGGGC	.	101	42	89	0	.	0	0	0	0	0
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10227550	10227550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH13-6	NM_003802	exon23	c.G2723T	p.R908L	TCACACCGTTCCT	.	93	21	74	0	.	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10293878	10293878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon40	c.C5707A	p.Q1903K	CATGCTGGAGTTT	.	66	13	81	0	.	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10303798	10303798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon27	c.G3644T	p.R1215L	TTGACCCGCTGCA	.	55	24	46	0	.	0	0	0	0	0
MYH8	4626	bcgsc.ca	37	17	10304060	10304060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon27	c.G3382T	p.E1128X	CCCTCTCTGCCTC	.	30	17	33	1	.	0	0	0	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10353829	10353829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon30	c.G4122T	p.Q1374H	CCTCCACTGGGCA	.	131	20	115	0	.	0	0	0	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10356511	10356511	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon24	c.C3069A	p.T1023T	GGTCAGGGTGTTG	.	162	75	224	0	.	0	0	0	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10357111	10357111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon23	c.A2783G	p.E928G	GCTCTTTCAGTTA	.	193	39	258	0	.	0	0	0	0	0
MYH4	4622	ucsc.edu;bcgsc.ca	37	17	10363404	10363404	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon14	c.G1281C	p.V427V	AGCACCCACTGCA	.	178	79	217	3	.	0	0	0	0	0
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10402002	10402002	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon30	c.G4122A	p.Q1374Q	CCTCCACTGGGCA	.	102	37	88	0	.	0	0	0	0	0
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408289	10408289	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon22	c.C2529A	p.L843L	TTTGAGGAGGGGT	.	83	28	63	0	.	0	0	0	0	0
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10428845	10428845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH2-194	NM_017534	exon32	c.T4460A	p.L1487Q	TTGAACAGCTCAG	.	57	10	62	0	.	0	0	0	0	0
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10535908	10535908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH3-95	NM_002470	exon34	c.G4841T	p.R1614L	TTGAGCCGGATGG	.	60	27	64	0	.	0	0	0	0	0
SHISA6	388336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11461111	11461111	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHISA6-67	NM_207386	exon6	c.C1146T	p.H382H	GCGGCACCTGCCC	.	99	30	101	0	.	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11592948	11592948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon20	c.C3809A	p.S1270Y	TGGAATCCACTAT	.	82	31	110	0	.	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11725237	11725237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon46	c.G8708C	p.G2903A	TCCCAGGGGAGAT	.	75	21	61	0	.	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11738038	11738038	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon49	c.C9330A	p.V3110V	TCAGGTCGTGGGT	.	267	46	233	0	.	0	0	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11772530	11772530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon51	c.C10013A	p.A3338D	AAGAAGCCGAAGT	.	36	4	50	0	.	0	0	0	0	0
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12656026	12656026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOCD-93	NM_001146312	exon10	c.C1421A	p.T474N	CGGACACCTTCAA	.	137	30	113	0	.	0	0	0	0	0
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	13504387	13504387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST3A1-515	NM_006042	exon1	c.C60A	p.S20R	GAAGATGCTGCGG	.	166	42	94	0	.	0	0	0	0	0
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15638662	15638662	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D26-90	.	.	.	.	TTGCAGGATGGAG	.	258	63	264	0	.	0	0	0	0	0
PEMT	10400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17415964	17415964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEMT-90	NM_001267552	exon4	c.A325G	p.T109A	CCTGCGTGAAGCT	.	179	73	113	0	.	0	0	0	0	0
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17701546	17701546	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAI1-91	NM_030665	exon3	c.G5284C	p.D1762H	CCAGCTGACCCGG	.	70	13	14	0	.	0	0	0	0	0
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18148680	18148680	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLII-91	NM_002018	exon29	c.G3663C	p.L1221L	GGCCTTCAGGCTC	.	127	57	150	0	.	0	0	0	0	0
CCDC144C	348254	broad.mit.edu;bcgsc.ca	37	17	20224817	20224817	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	AGAGCAAGCACGG	.	299	35	266	0	.	0	0	0	0	0
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21201734	21201734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP2K3-790	NM_145109	exon2	c.A59G	p.K20R	AATCCAAGAGGAA	.	190	28	225	0	.	0	0	0	0	0
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu	37	17	21318888	21318888	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001194958	exon3	c.234delC	p.I78fs	GGACATCCGCTGG	.	484	35	379	0	.	0	0	0	0	0
KCNJ18	100134444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319147	21319147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001194958	exon3	c.C493G	p.Q165E	GTGGCCCAGTCCA	.	267	42	206	1	.	0	0	0	0	0
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21319212	21319212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001194958	exon3	c.G558C	p.R186S	GGCAAGGCCCAAG	.	320	23	240	0	.	0	0	0	0	0
KCNJ18	100134444	bcgsc.ca	37	17	21319596	21319596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001194958	exon3	c.C942A	p.S314R	CCGCAGCTCCTAC	.	414	38	389	2	.	0	0	0	0	0
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21319910	21319910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001194958	exon3	c.G1256T	p.G419V	CTGGCGGCGGGGT	.	95	7	59	0	.	0	0	0	0	0
FAM27L	284123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	21826156	21826156	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CCTGCAGGAGAGG	.	150	64	139	1	.	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	8	8	0	0	G|0.001;C|0.999	0	0	0	0	0
ABHD15	116236	bcgsc.ca	37	17	27889986	27889986	+	Missense_Mutation	SNP	T	T	C	rs542939	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABHD15-90	NM_198147	exon2	c.A1000G	p.T334A	AGTAGGTATCCCA	.	81	5	114	2	T|0.268;C|0.732	0	0	0	0	0
GIT1	28964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27901828	27901830	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GGC	GGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GIT1-251	NM_001085454	exon21	c.2203_2205del	p.735_735del	CACTGGGGCGCCG	.	57	10	54	0	.	0	0	0	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28407846	28407846	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB5-70	NM_198529	exon17	c.C3273T	p.N1091N	CTGGAACCAGTCC	.	155	34	189	0	.	0	0	0	0	0
CPD	1362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28748840	28748840	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPD-92	NM_001304	exon4	c.A1296T	p.V432V	TACAGTAGTTTTA	.	68	18	77	0	.	0	0	0	0	0
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29120477	29120477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRLF3-90	NM_015986	exon5	c.G817C	p.V273L	GAGGCACCAATGT	.	111	46	120	0	.	0	0	0	0	0
SPACA3	124912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	31322454	31322454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPACA3-92	NM_173847	exon2	c.C62A	p.P21H	CTTCTCCTTCTGT	.	130	20	131	0	.	0	0	0	0	0
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	31618866	31618866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_183377	exon1	c.G268T	p.V90L	CCAGCACCCACAG	.	69	20	39	0	.	0	0	0	0	0
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33498375	33498375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC45B-157	NM_173167	exon13	c.C1730A	p.T577N	TGGCCACCACCCT	.	179	82	154	2	.	0	0	0	0	0
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33504573	33504573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC45B-157	NM_173167	exon17	c.G2205T	p.Q735H	GCTTCAGAACTAT	.	79	45	63	0	.	0	0	0	0	0
SLC35G3	146861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33520493	33520493	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152462	exon1	c.C834T	p.H278H	GGCAGGGTGGGCC	.	251	53	219	0	.	0	0	0	0	0
SLFN5	162394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33592239	33592239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN5-92	NM_144975	exon5	c.C2008T	p.Q670X	ATCACTCAGACAG	.	184	26	221	0	.	0	0	0	0	0
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33768243	33768243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN13-91	NM_144682	exon6	c.C2065G	p.Q689E	CTCTCTGAGTGAT	.	118	23	120	0	.	0	0	0	0	0
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37818535	37818535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD3-90	NM_006804	exon14	c.C1171T	p.L391F	ATCGTGCTCAAGT	.	146	46	120	0	.	0	0	0	0	0
MED24	9862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38179422	38179422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MED24-187	NM_014815	exon20	c.A2212G	p.M738V	CGCCCATGTGCAG	.	238	114	221	2	.	0	0	0	0	0
WIPF2	147179	broad.mit.edu	37	17	38430251	38430251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WIPF2-93	NM_133264	exon6	c.G1180T	p.D394Y	TTCTTGGGTGAGT	.	41	8	46	1	.	0	0	0	0	0
KRT20	54474	ucsc.edu	37	17	39041305	39041305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT20-155	NM_019010	exon1	c.C133T	p.R45C	AGATGCGGATGCC	.	53	9	54	1	.	0	0	0	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240795	39240795	+	Missense_Mutation	SNP	A	A	T	rs9894966		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_033061	exon1	c.A337T	p.S113C	CGCCCCAGCTGCT	.	145	13	25	0	.	0	0	0	0	0
KRTAP9-8	83901	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39394402	39394402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP9-8-1	NM_031963	exon1	c.C99G	p.C33W	CTGCTGCCAGCCC	.	94	19	110	1	.	0	0	0	0	0
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39645883	39645883	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT36-90	NM_003771	exon1	c.G234T	p.V78V	GCTCCCCACAAAG	.	118	36	105	0	.	0	0	0	0	0
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39742633	39742633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT14-91	NM_000526	exon1	c.C454G	p.Q152E	GCCTCTGGTACCA	.	238	52	242	0	.	0	0	0	0	0
KRT16	3868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39766464	39766464	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT16-91	NM_005557	exon7	c.C1305T	p.G435G	GGATTGGCCAGAT	.	284	57	263	0	.	0	0	0	0	0
LEPREL4	10609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39964251	39964251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LEPREL4-90	NM_006455	exon5	c.G922A	p.D308N	GCACATCATTCAC	.	199	35	213	0	.	0	0	0	0	0
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40054039	40054039	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACLY-228	NM_001096	exon13	c.G1392T	p.V464V	AGGCGCCACCTCA	.	70	35	66	0	.	0	0	0	0	0
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40344460	40344460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GHDC-90	NM_001142623	exon5	c.G688A	p.G230R	GCGCTCCAGGGTT	.	82	39	62	0	.	0	0	0	0	0
ITGA2B	3674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42452028	42452028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA2B-228	NM_000419	exon28	c.A2942T	p.Q981L	CTCACCTGAGCTT	.	94	18	96	1	.	0	0	0	0	0
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42847371	42847371	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM11-227	NM_002390	exon4	c.C336G	p.Y112X	GCAATACGTGGAG	.	144	24	103	0	.	0	0	0	0	0
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44117207	44117207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001193466	exon8	c.G2064T	p.Q688H	CTGCCACTGAGAT	.	95	20	93	0	.	0	0	0	0	0
WNT3	7473	broad.mit.edu;ucsc.edu	37	17	44846126	44846126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT3-522	NM_030753	exon4	c.G628T	p.A210S	ACAGCCCGTGGCA	.	125	22	120	2	.	0	0	0	0	0
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45894628	45894628	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL7-68	NM_145798	exon8	c.A696T	p.T232T	CTGGTGTGTGGGG	.	33	18	63	0	.	0	0	0	0	0
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47121377	47121377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2BP1-226	NM_006546	exon11	c.G1249T	p.V417L	CAGGCAGTGGGCG	.	115	56	116	1	.	0	0	0	0	0
NGFR	4804	hgsc.bcm.edu	37	17	47584004	47584004	+	Silent	SNP	C	C	T	rs116077510		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NGFR-947	NM_002507	exon3	c.C552T	p.A184A	CTGGGCCGACGCC	.	63	44	3	0	C|0.969;T|0.031	0	0	0	0	0
DLX3	1747	broad.mit.edu;bcgsc.ca	37	17	48068892	48068892	+	Missense_Mutation	SNP	C	C	A	rs148713638	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLX3-90	NM_005220	exon3	c.G853T	p.A285S	ACACAGCCCCAGG	.	21	8	27	0	C|1.000;T|0.000	0	0	0	0	0
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48154781	48154781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA3-229	NM_005501	exon16	c.G2109T	p.E703D	TTGCGAGCTGGGG	.	135	25	136	0	.	0	0	0	0	0
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48246526	48246526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCA-92	NM_000023	exon6	c.G658T	p.A220S	AGCCACGCCCGCT	.	59	28	72	0	.	0	0	0	0	0
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48677192	48677192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1G-67	NM_001256360	exon17	c.G3662A	p.G1221E	TGGATGGGGATGA	.	91	38	61	0	.	0	0	0	0	0
CACNA1G	8913	bcgsc.ca	37	17	48703752	48703752	+	Silent	SNP	T	T	C	rs739925	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1G-67	NM_018896	exon38	c.T6774C	p.P2258P	CCGGCCTACGTCC	.	119	6	147	1	T|0.144;G|0.286	0	0	0	0	0
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51900753	51900753	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.C359G	p.P120R	TGATCCCCCAGAA	.	64	36	75	0	.	0	0	0	0	0
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	51900846	51900846	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.452delG	p.W151fs	GCCTCTGGGAAAT	.	75	29	71	0	.	0	0	0	0	0
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53014522	53014522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOM1L1-91	NM_005486	exon10	c.G968T	p.S323I	GTCCCAGTCCCCG	.	32	14	39	0	.	0	0	0	0	0
NOG	9241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	54671840	54671840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOG-90	NM_005450	exon1	c.G256T	p.D86Y	CCCGAGGACCGGC	.	68	17	17	0	.	0	0	0	0	0
LPO	4025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56326518	56326518	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPO-91	NM_006151	exon5	c.T423C	p.I141I	CACCATTACGGGA	.	69	18	68	0	.	0	0	0	0	0
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56570286	56570286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3238T	p.D1080Y	CAGTATCACTGCC	.	213	33	262	0	.	0	0	0	0	0
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56570288	56570288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3236T	p.S1079I	GTATCACTGCCAT	.	209	33	263	0	.	0	0	0	0	0
SEPT4	5414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56598641	56598641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT4-68	NM_001256782	exon10	c.G1133C	p.R378P	TAGAGTCGACCCC	.	138	33	160	0	.	0	0	0	0	0
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56676889	56676889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX14-810	NM_001201457	exon14	c.A1835T	p.E612V	CTGGCCTCTTCTG	.	105	51	69	0	.	0	0	0	0	0
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58137396	58137396	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEATR6-227	NM_022070	exon10	c.C1478G	p.S493C	GCAACAGAAAGAA	.	95	15	99	0	.	0	0	0	0	0
NACA2	342538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59668146	59668146	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NACA2-91	NM_199290	exon1	c.T396A	p.S132S	TTGCTGAGATAAA	.	120	75	116	0	.	0	0	0	0	0
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60484029	60484029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB3-227	NM_001144933	exon9	c.T833A	p.L278H	AAGAGCTCAAGAG	.	64	24	69	0	.	0	0	0	0	0
FTSJ3	117246	bcgsc.ca	37	17	61903965	61903965	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FTSJ3-91	NM_017647	exon3	c.C135A	p.A45A	GGCTCGGGCTTTC	.	55	4	58	1	.	0	0	0	0	0
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61958131	61958131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GH2-93	NM_022557	exon4	c.G457T	p.V153L	CCCTCACCCACAT	.	163	32	180	0	.	0	0	0	0	0
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67094069	67094069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA6-159	NM_080284	exon23	c.G3112T	p.D1038Y	TGTAATCACTGAT	.	17	7	26	0	.	0	0	0	0	0
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	68171793	68171793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNJ2-90	NM_000891	exon2	c.G613T	p.D205Y	ATGAGAGACGGCA	.	189	95	176	1	.	0	0	0	0	0
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71334923	71334923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SDK2-24	NM_001144952	exon45	c.G6322T	p.G2108C	GCTCACCCGAGTC	.	174	41	187	0	.	0	0	0	0	0
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368353	72368353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR142-93	NM_181790	exon4	c.G1003T	p.A335S	AACTCGGCCATCA	.	205	82	170	2	.	0	0	0	0	0
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72522169	72522169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD300LB-91	NM_174892	exon2	c.G199T	p.G67W	GGGACCCCTGCTC	.	81	43	55	0	.	0	0	0	0	0
CD300E	342510	ucsc.edu;bcgsc.ca	37	17	72613500	72613500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD300E-156	NM_181449	exon2	c.T145C	p.W49R	GGCACCAGTACTT	.	123	56	143	2	.	0	0	0	0	0
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72725483	72725483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAB37-230	NM_175738	exon2	c.C161T	p.A54V	TCTCGGCCACTGT	.	183	35	175	0	.	0	0	0	0	0
FADS6	283985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72875688	72875688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FADS6-22	NM_178128	exon5	c.G752T	p.R251L	TTGTCCCGGGAGA	.	178	46	183	1	.	0	0	0	0	0
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOP2-134	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	179	42	186	0	.	0	0	0	0	0
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73096274	73096274	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC16A5-90	NM_001271765	exon5	c.C516T	p.F172F	TACCTTCCTTGTC	.	139	61	129	0	.	0	0	0	0	0
TRIM47	91107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73871533	73871533	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM47-659	NM_033452	exon5	c.C1224G	p.L408L	ACTCTCGAGGTCT	.	95	34	114	0	.	0	0	0	0	0
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74392628	74392628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBE2O-272	NM_022066	exon14	c.G2390T	p.G797V	ATCAGCCCGGCCA	.	46	15	48	0	.	0	0	0	0	0
CBX4	8535	broad.mit.edu	37	17	77807925	77807925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CBX4-228	NM_003655	exon5	c.G1516T	p.A506S	CCGCCGCCACCGC	.	86	51	20	1	.	0	0	0	0	0
GAA	2548	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78091491	78091491	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAA-91	NM_001079803	exon18	c.G2424T	p.P808P	GCTGCCGGCCCCC	.	172	40	125	1	.	0	0	0	0	0
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79428055	79428055	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAHCC1-23	.	.	.	.	GAACCTCTTCCAG	.	130	34	28	0	.	0	0	0	0	0
MYADML2	255275	bcgsc.ca	37	17	79898737	79898737	+	Missense_Mutation	SNP	T	T	C	rs181984777		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYADML2-68	NM_001145113	exon3	c.A881G	p.D294G	GCGAGGTCAACGA	.	210	6	186	1	T|0.996;C|0.004	0	0	0	0	0
HEXDC	284004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80393626	80393626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEXDC-92	NM_173620	exon6	c.C509T	p.T170M	ACAGCACGGGGAA	.	172	68	69	1	.	0	0	0	0	0
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	321761	321761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COLEC12-92	NM_130386	exon9	c.C2110A	p.P704T	CTCCTGGCCCATG	.	57	30	60	0	.	0	0	0	0	0
CLUL1	27098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	627305	627305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLUL1-92	NM_199167	exon5	c.A632G	p.Q211R	TTGACCAGACTTT	.	128	57	147	1	.	0	0	0	0	0
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3067394	3067394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM1-94	NM_003803	exon38	c.G4924T	p.G1642C	ATTTGCCCGAGTC	.	166	39	126	0	.	0	0	0	0	0
C18orf42	642597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5145576	5145576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145194	exon2	c.G195C	p.K65N	TTCGTGCTTCTTG	.	196	43	221	0	.	0	0	0	0	0
LAMA1	284217	broad.mit.edu;bcgsc.ca	37	18	6986199	6986199	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA1-149	NM_005559	exon37	c.G5316C	p.E1772D	CTTTGCCTCAGCT	.	90	31	87	2	.	0	0	0	0	0
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9258888	9258888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD12-92	NM_015208	exon9	c.C5623G	p.L1875V	TCATATCTCCTGG	.	164	45	177	0	.	0	0	0	0	0
TXNDC2	84203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9886692	9886692	+	Silent	SNP	G	G	T	rs114777727	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXNDC2-92	NM_001098529	exon2	c.G216T	p.T72T	CCACACGTTCCAC	.	98	46	109	0	G|0.996;A|0.004	0	0	0	0	0
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12277152	12277152	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIDEA-91	NM_001279	exon5	c.C543A	p.A181A	CTCCGCCCAGGTG	.	132	63	140	0	.	0	0	0	0	0
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12817252	12817252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN2-652	NM_001207013	exon7	c.G677T	p.G226V	AAGGAGCCAGATT	.	203	93	204	0	.	0	0	0	0	0
POTEC	388468	broad.mit.edu;bcgsc.ca	37	18	14533178	14533178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POTEC-3	NM_001137671	exon5	c.G937A	p.V313I	AACATACAGCAAG	.	530	194	649	2	.	0	0	0	0	0
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14748439	14748439	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon1	c.C21A	p.A7A	AGCTGCCGCTGGC	.	94	27	59	1	.	0	0	0	0	0
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14787090	14787090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon15	c.G1725T	p.W575C	TTCTTGGGATTCT	.	132	52	154	0	.	0	0	0	0	0
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14851981	14851981	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon36	c.G3681A	p.E1227E	CAATGAGGTGCTC	.	173	40	234	0	.	0	0	0	0	0
GREB1L	80000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18975392	18975392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001142966	exon5	c.G402A	p.M134I	GTGTATGGAACAA	.	96	32	92	2	.	0	0	0	0	0
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21646036	21646036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC39C-91	NM_001135993	exon3	c.A277G	p.T93A	AAAACCACAGAAA	.	151	73	183	0	.	0	0	0	0	0
SS18	6760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23615884	23615884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SS18-1968	NM_001007559	exon8	c.A884G	p.H295R	TCATTATGACCTA	.	51	20	69	0	.	0	0	0	0	0
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25565561	25565561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon12	c.C1906A	p.P636T	CAAATGGTCCAGC	.	87	17	96	0	.	0	0	0	0	0
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25593747	25593747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon3	c.C299A	p.A100D	AACTTGGCATGCT	.	75	19	77	0	.	0	0	0	0	0
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28906904	28906904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG1-519	NM_001942	exon3	c.G152T	p.W51L	GTGAATGGATCAA	.	355	155	461	1	.	0	0	0	0	0
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29049291	29049291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG3-98	NM_001944	exon12	c.C1876T	p.L626F	CTGCTCCTTGGTC	.	88	35	70	0	.	0	0	0	0	0
KLHL14	57565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30350407	30350407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL14-91	NM_020805	exon2	c.G148A	p.V50M	CCAGCACGGCCTT	.	100	31	78	1	.	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323338	31323338	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.C3526A	p.R1176R	CACCTCCGGGAGA	.	42	24	58	0	.	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31325189	31325189	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.G5377C	p.E1793Q	GCACCAGAGAGAA	.	65	11	93	0	.	0	0	0	0	0
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32431876	32431876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTNA-153	NM_001390	exon14	c.C1435A	p.L479I	GCTGAGCTAGAAA	.	204	93	195	0	.	0	0	0	0	0
ZNF271	10778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	32889587	32889587	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF271-90	.	.	.	.	CTAGGAGGGTGGT	.	124	55	117	1	.	0	0	0	0	0
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34297943	34297943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FHOD3-139	NM_025135	exon16	c.G2157T	p.R719S	TGGGAGGACCCAG	.	161	28	160	1	.	0	0	0	0	0
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34646889	34646889	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1328-90	NM_020776	exon7	c.G613C	p.V205L	TCATCTGTGGAAC	.	202	43	181	0	.	0	0	0	0	0
CELF4	56853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34853088	34853088	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELF4-92	NM_020180	exon7	c.G840C	p.A280A	GCCCTGCGCGACT	.	314	147	249	0	.	0	0	0	0	0
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	39567811	39567811	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3C3-1312	NM_002647	exon5	c.A567G	p.K189K	GGTGAAAGTAGAT	.	133	73	162	0	.	0	0	0	0	0
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43207111	43207111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_001242692	exon5	c.A520T	p.R174W	CAAGACAGGTGGG	.	120	22	86	0	.	0	0	0	0	0
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43219733	43219733	+	Missense_Mutation	SNP	G	G	T	rs137884313	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_001242692	exon8	c.G866T	p.G289V	CTGTTGGGGTCGG	.	95	21	94	0	G|1.000;A|0.000	0	0	0	0	0
SIGLEC15	284266	hgsc.bcm.edu	37	18	43417752	43417752	+	Silent	SNP	C	C	G	rs78530686	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC15-90	NM_213602	exon3	c.C387G	p.V129V	GCGCGTCGAGCGC	.	5	5	0	0	C|0.786;G|0.214	0	0	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43458387	43458387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPG5-580	NM_020964	exon34	c.A5896G	p.I1966V	GCTGAATGATTAC	.	62	14	54	0	.	0	0	0	0	0
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44104755	44104755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_144612	exon30	c.C4656A	p.N1552K	GTCCTCGTTGGTG	.	207	74	248	0	.	0	0	0	0	0
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44561326	44561326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCEB3B-156	NM_016427	exon1	c.C310T	p.Q104X	GGTCCTGAAGAGC	.	66	36	52	0	.	0	0	0	0	0
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48458690	48458690	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ME2-90	NM_001168335	exon13	c.C1377G	p.V459V	GCGAGTCTTTACA	.	151	23	185	0	.	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEX3C-659	NM_016626	exon1	c.537_545del	p.179_182del	GCCGCCGCCGCCG	.	28	21	1	1	.	0	0	0	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50278479	50278479	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon2	c.C147G	p.A49A	TGATGCCGTCACA	.	57	8	66	0	.	0	0	0	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50985607	50985607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon24	c.G3398C	p.R1133P	GGAAACGGGCCAC	.	62	22	80	0	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	24	12	0	0	T|0.767;C|0.233	0	0	0	0	0
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59221763	59221763	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH20-155	NM_031891	exon11	c.G2241T	p.T747T	CCAGACGTATATG	.	115	54	83	0	.	0	0	0	0	0
TNFRSF11A	8792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	60036089	60036089	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNFRSF11A-659	NM_003839	exon9	c.A939G	p.V313V	ATGTGTAGGAGGT	.	237	63	224	1	.	0	0	0	0	0
SERPINB7	8710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61460444	61460444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB7-226	NM_001261830	exon4	c.C269A	p.S90Y	ATGCATCCCACAA	.	89	21	105	0	.	0	0	0	0	0
SERPINB8	5271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61654266	61654266	+	Missense_Mutation	SNP	C	C	A	rs146637081	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB8-226	NM_198833	exon7	c.C879A	p.D293E	TTTTGACGAAGCC	.	153	66	140	0	C|1.000;G|0.000	0	0	0	0	0
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63476945	63476945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon3	c.C216G	p.H72Q	GCTTCACTCTGAT	.	94	40	108	0	.	0	0	0	0	0
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63511216	63511216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon7	c.A1150T	p.M384L	TACCCTATGGAGG	.	119	32	124	0	.	0	0	0	0	0
CDH19	28513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	64239377	64239377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH19-516	NM_021153	exon2	c.C65A	p.A22E	TCTGTTGCTCCAA	.	107	16	114	0	.	0	0	0	0	0
DSEL	92126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65179129	65179129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSEL-157	NM_032160	exon2	c.G2747T	p.W916L	ACCTTCCATTCAC	.	70	30	81	1	.	0	0	0	0	0
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	66564598	66564598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon8	c.G1196T	p.R399I	AAAATAGATTAAG	.	49	8	56	0	.	0	0	0	0	0
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	66721282	66721282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon10	c.A1450T	p.N484Y	TCCCTGAATCAGA	.	22	5	16	0	.	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	9	9	0	0	C|0.390;A|0.610	0	0	0	0	0
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70526196	70526196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NETO1-94	NM_001201465	exon4	c.C334A	p.P112T	TTATTGGAGAAAA	.	124	49	143	0	.	0	0	0	0	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72775251	72775251	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF407-92	NM_017757	exon8	c.G5574T	p.P1858P	AGCGCCGCCCCCT	.	253	62	203	0	.	0	0	0	0	0
CTDP1	9150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77475469	77475469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTDP1-90	NM_004715	exon8	c.G2009T	p.R670L	TCACTCGGCTGGT	.	112	46	70	0	.	0	0	0	0	0
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1220443	1220443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STK11-5227	NM_000455	exon4	c.C536G	p.P179R	TCAAGCCGGGGAA	.	183	107	169	1	.	0	0	0	0	0
OAZ1	4946	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2271846	2271846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OAZ1-68	.	.	.	.	CGTCCAGTCCAGG	.	206	132	216	2	.	0	0	0	0	0
SGTA	6449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2757762	2757762	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGTA-91	NM_003021	exon10	c.G756T	p.S252S	GCCACCCGAAATC	.	91	58	62	1	.	0	0	0	0	0
NFIC	4782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3449047	3449047	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFIC-226	NM_001245004	exon7	c.A994T	p.K332X	ATGGACAAGTCAC	.	145	88	116	0	.	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5239001	5239001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRS-357	NM_002850	exon13	c.G1778T	p.R593L	GCCAGGCGGAAGG	.	118	66	43	0	.	0	0	0	0	0
MLLT1	4298	hgsc.bcm.edu	37	19	6214015	6214015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLLT1-658	NM_005934	exon9	c.G1342T	p.A448S	AGTCGGCGCTGTT	.	9	7	10	0	.	0	0	0	0	0
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416662	6416662	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHSRP-226	NM_003685	exon15	c.1328-1G>T	.	CGCCACCTGCAGA	.	78	43	87	0	.	0	0	0	0	0
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6853959	6853959	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV1-1276	NM_005428	exon26	c.2334delG	p.V778fs	CACAGTGGGAAGC	.	23	17	26	0	.	0	0	0	0	0
ZNF358	140467	hgsc.bcm.edu	37	19	7585011	7585011	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF358-90	NM_018083	exon2	c.C883T	p.Q295X	TGTCCGCAGTGCG	.	23	17	0	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060203	9060203	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.C27243A	p.T9081T	TGTTTGGGTGGTA	.	115	71	196	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062539	9062539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.G24907T	p.G8303C	CCAGGCCAGGGTT	.	94	54	145	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9070334	9070334	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.T17112A	p.T5704T	GTGCGCAGTGTCT	.	188	104	271	0	.	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9090531	9090531	+	Silent	SNP	T	T	C	rs12976721	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon1	c.A1284G	p.E428E	TTCTGTTTCCTTT	.	103	5	148	1	T|0.772;C|0.228	0	0	0	0	0
COL5A3	50509	broad.mit.edu;mdanderson.org	37	19	10097029	10097029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A3-99	NM_015719	exon30	c.G2314T	p.A772S	CGCCAGCCTGCCC	.	29	20	19	0	.	0	0	0	0	0
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10106750	10106750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A3-99	NM_015719	exon15	c.G1525T	p.G509W	GTGGCCCTTCTGC	.	149	85	161	0	.	0	0	0	0	0
TYK2	7297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10476223	10476223	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TYK2-1009	NM_003331	exon7	c.G981A	p.W327X	TACTGGCCACCAC	.	78	32	62	1	.	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11150201	11150201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA4-1523	NM_001128849	exon30	c.G4238A	p.G1413D	AGCGTGGCCTTCA	.	65	39	74	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13565966	13565966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1A-67	NM_001127222	exon2	c.G354T	p.E118D	ATGCTGCTCCAGT	.	96	55	127	0	.	0	0	0	0	0
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15083539	15083539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC1A6-186	NM_001272087	exon4	c.A184T	p.T62S	TGACCGTCAGCAG	.	321	145	227	1	.	0	0	0	0	0
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15586650	15586650	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP2-93	NM_052890	exon2	c.G831C	p.L277L	CCCATCCAGGGCG	.	55	12	59	0	.	0	0	0	0	0
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15752302	15752302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CYP4F3-93	NM_001199209	exon2	c.G77A	p.G26E	TGGTTGGGGCCTC	.	121	69	133	0	.	0	0	0	0	0
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16973222	16973222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIN3B-228	NM_015260	exon9	c.T1118A	p.F373Y	TGTCCTTCGCGCC	.	58	29	84	0	.	0	0	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17303667	17303667	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO9B-67	NM_001130065	exon21	c.A2924T	p.H975L	GTCGGCACTTCCT	.	154	93	107	0	.	0	0	0	0	0
FAM129C	199786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17643172	17643172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM129C-90	NM_001098524	exon4	c.G380T	p.R127L	ACGGCCGCCTAGA	.	172	105	199	0	.	0	0	0	0	0
ZNF90	7643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20228898	20228898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF90-48	NM_007138	exon4	c.G535T	p.G179C	GAATGTGGCAAAG	.	54	21	62	0	.	0	0	0	0	0
ZNF675	171392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23844980	23844980	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF675-228	NM_138330	exon3	c.C162T	p.T54T	CAGACAGGTGATC	.	36	17	45	0	.	0	0	0	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31767667	31767667	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C3032G	p.T1011S	TGTTCGGTGGACA	.	198	112	316	0	.	0	0	0	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768123	31768123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C2576A	p.T859K	TTTGACGTGTGGC	.	106	61	157	0	.	0	0	0	0	0
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35260460	35260460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF599-92	NM_001007248	exon2	c.G19T	p.A7S	CTAATGCCTGGGA	.	58	36	92	0	.	0	0	0	0	0
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35786525	35786525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAG-947	NM_080600	exon4	c.G56T	p.G19V	CCCGAGGGGGTCA	.	57	30	69	0	.	0	0	0	0	0
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884174	36884174	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFP82-91	NM_133466	exon5	c.T1068C	p.H356H	TCTCTGATGGAGT	.	48	30	77	0	.	0	0	0	0	0
ZNF382	84911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37100830	37100830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF382-90	NM_032825	exon3	c.G14T	p.G5V	TACAGGGATCAGT	.	157	85	172	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38572624	38572624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L3-91	NM_015073	exon3	c.G419A	p.R140Q	TCCACCGACTCTC	.	84	23	120	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38572784	38572784	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L3-91	NM_015073	exon3	c.G579T	p.T193T	GCACACGGGGGCG	.	37	24	3	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38954426	38954426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR1-100	NM_001042723	exon22	c.G2722T	p.D908Y	CTTGTGGACTTCC	.	88	52	107	0	.	0	0	0	0	0
MAP4K1	11184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39103252	39103252	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP4K1-980	NM_007181	exon9	c.A664C	p.R222R	CCTACCTGAGAGG	.	38	24	52	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	15	14	0	0	G|0.349;A|0.651	0	0	0	0	0
PAPL	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39589631	39589631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001004318	exon4	c.C354A	p.S118R	CTGGAGCCGTCGG	.	28	16	50	0	.	0	0	0	0	0
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39959793	39959793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUPT5H-94	NM_003169	exon14	c.G1218T	p.E406D	CCTGGAGGTGGTG	.	146	89	223	1	.	0	0	0	0	0
SERTAD1	29950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40929113	40929113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERTAD1-226	NM_013376	exon2	c.C341T	p.S114F	GCCATGGAGGCTG	.	138	16	95	0	.	0	0	0	0	0
NUMBL	9253	ucsc.edu	37	19	41173871	41173871	+	Silent	SNP	C	C	T	rs62637692		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.G1332A	p.Q444Q	TTGCTGCTGTTGC	.	57	20	47	7	C|0.982;T|0.018	0	0	0	0	0
NUMBL	9253	ucsc.edu	37	19	41173874	41173874	+	Silent	SNP	T	T	C	rs62637691		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.A1329G	p.Q443Q	CTGCTGTTGCTGC	.	56	22	48	7	T|0.981;C|0.019	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu	37	19	41173883	41173883	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.G1320A	p.Q440Q	CTGCTGCTGCTGC	.	58	4	51	0	.	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu	37	19	41173904	41173904	+	Silent	SNP	T	T	C	rs79658769		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.A1299G	p.Q433Q	TTGCTGTTGCTGC	.	49	11	49	0	C|1.000;|0.000	0	0	0	0	0
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43766262	43766262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSG9-92	NM_002784	exon3	c.C459A	p.S153R	GTTGCTGCTGGAG	.	73	30	118	0	.	0	0	0	0	0
PHLDB3	653583	hgsc.bcm.edu	37	19	44005886	44005886	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHLDB3-68	NM_198850	exon4	c.G534A	p.Q178Q	ACAGACCTGTTCC	.	9	7	0	0	.	0	0	0	0	0
MARK4	57787	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45801154	45801154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MARK4-782	NM_001199867	exon15	c.G1819T	p.G607W	CCCGCCGGGCGGC	.	76	49	27	2	.	0	0	0	0	0
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46094390	46094390	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR4-92	NM_005282	exon2	c.G735A	p.L245L	GCGGGACAGCAAG	.	74	41	65	1	.	0	0	0	0	0
DACT3	147906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47156013	47156013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_145056	exon3	c.T403A	p.C135S	CCCCACAGAAGGT	.	39	23	69	0	.	0	0	0	0	0
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47920493	47920493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEIS3-90	NM_001009813	exon2	c.C127G	p.P43A	GCAGGGGCTGGGG	.	112	64	87	0	.	0	0	0	0	0
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	47951225	47951225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A2-94	NM_015063	exon4	c.G1604A	p.S535N	CACTCGCTCACGT	.	63	35	18	0	.	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183685	48183685	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLTSCR1-48	NM_015711	exon6	c.C1258T	p.Q420X	GCGCTGCAAGCGA	.	20	8	1	0	.	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	7	7	0	0	A|0.308;G|0.692	0	0	0	0	0
RPL13A	23521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49994074	49994074	+	Missense_Mutation	SNP	C	C	G	rs1061320	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPL13A-90	NM_012423	exon5	c.C295G	p.L99V	GCCGCTCTGGACC	.	201	125	238	0	C|1.000;|0.000	0	0	0	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50155523	50155523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCAF1-68	NM_021228	exon7	c.G1877T	p.R626M	CCTCGAGGCGCGA	.	20	13	2	0	.	0	0	0	0	0
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50209636	50209636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPT1C-92	NM_001199752	exon12	c.G1309A	p.A437T	GCCTACGCCCATG	.	83	45	54	1	.	0	0	0	0	0
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50404912	50404912	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL4I1-523	NM_172374	exon4	c.C63A	p.P21P	CCTCTGGGGGGCT	.	81	54	60	0	.	0	0	0	0	0
MYBPC2	4606	hgsc.bcm.edu	37	19	50962397	50962397	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC2-67	NM_004533	exon23	c.C2625A	p.T875T	GTGGACCAAGGGC	.	41	22	3	0	.	0	0	0	0	0
KLK7	5650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51480918	51480918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLK7-650	NM_139277	exon6	c.A636T	p.R212S	GGTACCTCTGCAC	.	99	57	113	0	.	0	0	0	0	0
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51958781	51958781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon4	c.G942T	p.E314D	AGGCAGCTCCAGC	.	152	93	175	1	.	0	0	0	0	0
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51961365	51961365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon1	c.C277G	p.Q93E	GGCCCTGGGTCTC	.	177	108	280	1	.	0	0	0	0	0
FPR2	2358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52272299	52272299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FPR2-501	NM_001005738	exon2	c.C388G	p.P130A	CTGCATCCAGTCT	.	106	66	132	0	.	0	0	0	0	0
MIR517A	574479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54215536	54215536	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	AGTGACCCTCTAG	.	86	53	85	0	.	0	0	0	0	0
LILRB3	11025	bcgsc.ca	37	19	54722275	54722275	+	Silent	SNP	G	G	A	rs56528424		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRB3-93	NM_006864	exon11	c.C1548T	p.A516A	CTTCACGGCAGCA	.	261	7	318	2	.	0	0	0	0	0
LILRA6	79168	bcgsc.ca	37	19	54744361	54744361	+	Silent	SNP	A	A	C	rs2361801	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.T1047G	p.G349G	AAAATAACCCCGT	.	396	31	513	28	C|0.414;A|0.586	0	0	0	0	0
LILRA6	79168	bcgsc.ca	37	19	54744387	54744387	+	Missense_Mutation	SNP	C	C	T	rs71263238	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.G1021A	p.V341M	GGGTCACGTTCTC	.	351	9	436	4	C|0.659;T|0.341	0	0	0	0	0
LILRA6	79168	broad.mit.edu	37	19	54744441	54744441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.G967C	p.D323H	CGGTGTCATAGAT	.	232	5	274	0	.	0	0	0	0	0
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54930366	54930366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTYH1-90	NM_020659	exon2	c.T191C	p.V64A	TCGCTGTCTACCT	.	57	39	59	0	.	0	0	0	0	0
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55451819	55451819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP7-291	NM_001127255	exon4	c.G368T	p.W123L	TTTCTCCATCCTT	.	40	26	41	0	.	0	0	0	0	0
NLRP2	55655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55481494	55481494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP2-120	NM_001174082	exon2	c.C111A	p.H37Q	GGCACACGAGCTC	.	160	90	179	2	.	0	0	0	0	0
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369475	56369475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP4-216	NM_134444	exon3	c.G716C	p.G239A	AGGGCGGCTTGAA	.	109	64	146	0	.	0	0	0	0	0
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56466259	56466259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP8-361	NM_176811	exon3	c.G835T	p.D279Y	AAACCCGACCAAC	.	96	58	139	1	.	0	0	0	0	0
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56466706	56466706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP8-361	NM_176811	exon3	c.G1282T	p.V428F	GTGTTCGTCCGGT	.	88	47	126	0	.	0	0	0	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56539330	56539330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon7	c.G1731C	p.E577D	CTGTGAGGAGTAC	.	143	81	157	1	.	0	0	0	0	0
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56539331	56539331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon7	c.G1732T	p.E578X	TGTGAGGAGTACT	.	141	79	160	1	.	0	0	0	0	0
NLRP5	126206	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56569695	56569695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon14	c.T3389A	p.V1130E	ACCTGGTGCAGAA	.	94	54	94	1	.	0	0	0	0	0
PEG3	5178	ucsc.edu;bcgsc.ca	37	19	57325099	57325099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEG3-164	NM_001146184	exon9	c.C4711G	p.Q1571E	AGAGCTGCCCACA	.	165	90	249	2	.	0	0	0	0	0
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57334984	57334984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEG3-164	NM_001146184	exon4	c.C458A	p.P153Q	TGAGGTGGTGAGG	.	166	92	217	0	.	0	0	0	0	0
DUXA	503835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57672059	57672059	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUXA-91	NM_001012729	exon2	c.C132A	p.T44T	TTGTTTGGTAGCA	.	54	29	45	1	.	0	0	0	0	0
AURKC	6795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57746327	57746327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKC-1560	NM_001015878	exon6	c.660delG	p.V220fs	AAAGGTGGATTTG	.	137	61	188	0	.	0	0	0	0	0
ZNF17	7565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57932542	57932542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF17-90	NM_006959	exon3	c.G1682T	p.R561I	GTGGGAGAGTTTT	.	68	44	91	1	.	0	0	0	0	0
ZNF530	348327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58117486	58117486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF530-90	NM_020880	exon3	c.G593C	p.R198T	ACAGCAGGATTAG	.	95	63	119	1	.	0	0	0	0	0
ZNF211	10520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58152335	58152335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF211-92	NM_001265597	exon5	c.G676A	p.A226T	ACAGAGGCACCTT	.	119	71	167	1	.	0	0	0	0	0
ZNF551	90233	broad.mit.edu;bcgsc.ca	37	19	58199642	58199642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF551-91	NM_138347	exon3	c.G1999A	p.E667K	CACACTGAAGAAA	.	46	21	79	2	.	0	0	0	0	0
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58864353	58864353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1BG-90	NM_130786	exon3	c.G281A	p.R94H	CCCGAGCGGCAGC	.	90	25	121	0	.	0	0	0	0	0
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1094065	1094065	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNTG2-136	NM_018968	exon4	c.C294G	p.V98V	CCCTGTCGTCATA	.	120	44	149	0	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	11	9	0	0	G|0.301;C|0.699	0	0	0	0	0
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1926733	1926733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYT1L-95	NM_015025	exon10	c.C808A	p.Q270K	GTCCTTGGGCTAA	.	237	92	280	1	.	0	0	0	0	0
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1926734	1926734	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYT1L-95	NM_015025	exon10	c.C807A	p.A269A	TCCTTGGGCTAAT	.	239	91	280	2	.	0	0	0	0	0
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3197900	3197900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSSC1-90	NM_003310	exon7	c.G691A	p.V231M	CCCGCACCAGCTG	.	82	27	77	0	.	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3447573	3447573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_016030	exon6	c.C1441G	p.R481G	TCGATGCGCATCT	.	163	66	194	0	.	0	0	0	0	0
SOX11	6664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	5834070	5834070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX11-514	NM_003108	exon1	c.G1217T	p.S406I	AGGGCAGCCTGGG	.	200	45	156	0	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	5	5	0	0	A|0.003;G|0.997	0	0	0	0	0
FAM84A	151354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	14774305	14774305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM84A-91	NM_145175	exon2	c.C202A	p.P68T	GAGAGCCCCAGCC	.	73	29	86	0	.	0	0	0	0	0
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15372587	15372587	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NBAS-94	NM_015909	exon47	c.G6195T	p.L2065L	ACCTTCCAGGACC	.	96	33	85	0	.	0	0	0	0	0
FAM49A	81553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16743378	16743378	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM49A-226	NM_030797	exon6	c.330delG	p.L110fs	ACAAGTCAGAGAT	.	122	41	113	0	.	0	0	0	0	0
NT5C1B-RDH14	100526794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	18736655	18736655	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001199103	exon9	c.G1755A	p.V585V	CCATGACACCAAA	.	143	28	184	1	.	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21228418	21228418	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APOB-175	NM_000384	exon26	c.G11322T	p.L3774L	AGTTCTCAGCTTC	.	80	19	81	0	.	0	0	0	0	0
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24110821	24110821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATAD2B-68	NM_001242338	exon4	c.G453C	p.K151N	ATCTCCCTTCTTT	.	130	24	152	0	.	0	0	0	0	0
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25326646	25326646	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014971	exon4	c.G353C	p.G118A	TCCTCGGCACCAA	.	136	31	124	0	.	0	0	0	0	0
OTOF	9381	bcgsc.ca	37	2	26696889	26696889	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOF-135	NM_194248	exon27	c.C3378A	p.I1126I	GGGCCGGATGCCC	.	366	162	329	4	.	0	0	0	0	0
SLC30A3	7781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27479291	27479291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A3-90	NM_003459	exon7	c.G981A	p.T327T	AGTGAGCGTAAGG	.	358	68	308	0	.	0	0	0	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29497978	29497978	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon11	c.C2028A	p.I676I	GTCAAAGATGGGG	.	113	39	155	0	.	0	0	0	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29754793	29754793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon4	c.1142delC	p.P381fs	TTCCCTGGAGTGG	.	88	37	83	0	.	0	0	0	0	0
ALK	238	hgsc.bcm.edu	37	2	30143451	30143451	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon1	c.C75A	p.T25T	CTGGCCGGTCCCC	.	14	9	2	0	.	0	0	0	0	0
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31610680	31610680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XDH-158	NM_000379	exon8	c.G648T	p.L216F	TACCAGCAACTCT	.	58	13	63	0	.	0	0	0	0	0
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32477523	32477523	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRC4-276	NM_001199138	exon3	c.G227A	p.W76X	TAGTTCCACTCCT	.	89	40	88	0	.	0	0	0	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32673862	32673862	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC6-233	NM_016252	exon22	c.4485-1G>T	.	TTTTCAGATATGG	.	34	13	51	0	.	0	0	0	0	0
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32865410	32865410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC27-90	NM_017735	exon4	c.A470C	p.K157T	CCTCGAAGCCTAT	.	71	20	76	0	.	0	0	0	0	0
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33752422	33752422	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGRP3-661	NM_170672	exon11	c.C1026T	p.S342S	AGTCTCCCTGCAG	.	137	62	136	0	.	0	0	0	0	0
FAM98A	25940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33810384	33810384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM98A-91	NM_015475	exon8	c.G1016T	p.G339V	CCTCTCCCTCCTC	.	124	47	145	1	.	0	0	0	0	0
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37599541	37599541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QPCT-90	NM_012413	exon6	c.T866C	p.L289S	ACTCTTTGGAGGG	.	189	76	198	0	.	0	0	0	0	0
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	40656207	40656207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A1-93	NM_001252624	exon1	c.C1214G	p.P405R	CTAACAGGGTCAT	.	175	41	189	0	.	0	0	0	0	0
COX7A2L	9167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	42578413	42578413	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COX7A2L-226	NM_004718	exon3	c.G291T	p.G97G	GATGGTCCCTCCC	.	309	62	299	0	.	0	0	0	0	0
STON1-GTF2A1L	286749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48872174	48872174	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STON1-GTF2A1L-27	NM_001198593	exon7	c.C2418A	p.G806G	CTAGGGCACTTCA	.	33	8	53	0	.	0	0	0	0	0
NRXN1	9378	broad.mit.edu;mdanderson.org	37	2	50574004	50574004	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN1-92	NM_138735	exon1	c.G84A	p.G28G	GCGCCCCCCTGCG	.	34	10	31	0	.	0	0	0	0	0
GPR75-ASB3	100302652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	53992682	53992682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001164165	exon2	c.A142T	p.T48S	AGCACGTGTCCGC	.	100	41	120	0	.	0	0	0	0	0
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54080954	54080954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR75-92	NM_006794	exon2	c.G940T	p.A314S	CCTTGGCAGTGGA	.	177	63	182	0	.	0	0	0	0	0
APLF	200558	broad.mit.edu;bcgsc.ca	37	2	68805010	68805010	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APLF-92	NM_173545	exon10	c.G1392T	p.L464L	TGACCTGAACGAC	.	117	48	114	1	.	0	0	0	0	0
BMP10	27302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69092925	69092925	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMP10-92	NM_014482	exon2	c.T1113C	p.I371I	CTGGATAATTGCA	.	172	84	206	2	.	0	0	0	0	0
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188807	70188807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPRV1-69	NM_152792	exon1	c.G14T	p.G5V	CTGGCCCCTGGGC	.	66	13	59	0	.	0	0	0	0	0
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71629179	71629179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF638-94	NM_014497	exon16	c.G2791T	p.G931C	TTTGGTGGTTTAA	.	112	20	117	0	.	0	0	0	0	0
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71709010	71709010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYSF-158	NM_001130984	exon3	c.G149C	p.G50A	TCCAGGGATTTGA	.	46	13	38	0	.	0	0	0	0	0
SPR	6697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73115545	73115545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPR-92	NM_003124	exon2	c.C407T	p.S136F	TGACTTCCAGCGT	.	230	54	244	1	.	0	0	0	0	0
EMX1	2016	broad.mit.edu	37	2	73151565	73151565	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EMX1-90	NM_004097	exon2	c.C648T	p.Y216Y	CCACTACGTGGTG	.	105	4	23	0	.	0	0	0	0	0
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	73519448	73519448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR4-90	NM_001965	exon2	c.G907C	p.A303P	TGAAGGCAGAGAC	.	96	12	52	0	.	0	0	0	0	0
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	2	73679621	73679621	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALMS1-142	NM_015120	exon8	c.A5964T	p.S1988S	CTACTCACATTCA	.	103	45	111	2	.	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu	37	2	73717464	73717464	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALMS1-142	NM_015120	exon10	c.8375delG	p.R2792fs	GTAGAAGGCAAAG	.	29	10	21	0	.	0	0	0	0	0
TLX2	3196	hgsc.bcm.edu;bcgsc.ca	37	2	74742065	74742065	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX2-90	NM_016170	exon1	c.132delT	p.H44fs	GGGTCATGGGGAG	.	169	44	125	1	.	0	0	0	0	0
DQX1	165545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74746335	74746335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DQX1-92	NM_133637	exon11	c.C1829T	p.T610I	TTTCCAGTCCCGT	.	148	73	145	1	.	0	0	0	0	0
AUP1	550	bcgsc.ca	37	2	74756548	74756548	+	Silent	SNP	G	G	C	rs1183739	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AUP1-90	NM_181575	exon2	c.C129G	p.L43L	GAGAAAGAGGCGC	.	370	9	316	2	G|0.284;C|0.716	0	0	0	0	0
TACR1	6869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75425974	75425974	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACR1-523	NM_001058	exon1	c.C87G	p.A29A	TTGCCAGGCTGGT	.	302	89	322	0	.	0	0	0	0	0
LRRTM4	80059	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77745615	77745615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM4-94	NM_024993	exon3	c.C1380A	p.H460Q	AAGAGAGTGTTGC	.	111	29	111	2	.	0	0	0	0	0
LRRTM4	80059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	77746839	77746839	+	Missense_Mutation	SNP	G	G	C	rs76327576	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM4-94	NM_024993	exon3	c.C156G	p.F52L	ATCTGCGAAAGCA	.	137	24	191	0	G|0.996;C|0.004	0	0	0	0	0
REG3A	5068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79385466	79385466	+	Missense_Mutation	SNP	G	G	C	rs11554092	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	REG3A-91	NM_138938	exon3	c.C319G	p.H107D	GGTCATGGAGCCC	.	131	28	163	0	.	0	0	0	0	0
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79878752	79878752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA2-368	NM_001164883	exon2	c.G70T	p.V24L	CTAACAGTGGAAA	.	91	34	111	0	.	0	0	0	0	0
LRRTM1	347730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80530470	80530470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM1-73	NM_178839	exon2	c.G475T	p.G159W	GCAGCCCGTGGAA	.	110	51	99	1	.	0	0	0	0	0
RETSAT	54884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85577993	85577993	+	Missense_Mutation	SNP	C	C	T	rs201722519		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RETSAT-70	NM_017750	exon3	c.G507A	p.M169I	ACTGTACATGGGG	.	167	69	222	1	C|0.999;T|0.001	0	0	0	0	0
CAPG	822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85625897	85625897	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAPG-204	NM_001256139	exon7	c.C675A	p.G225G	CTTGGGGCCCAGG	.	162	30	125	2	.	0	0	0	0	0
RNF103-CHMP3	100526767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86769415	86769415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001198954	exon4	c.G153T	p.K51N	TCTTATCTTCAAT	.	106	31	108	0	.	0	0	0	0	0
CD8A	925	hgsc.bcm.edu	37	2	87016799	87016799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD8A-91	NM_001145873	exon6	c.C478A	p.R160S	CTGGGCGCAGGGA	.	7	4	0	0	.	0	0	0	0	0
TEX37	200523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88828736	88828736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152670	exon4	c.287delG	p.R96fs	CCACGAGGGAGGA	.	293	83	241	0	.	0	0	0	0	0
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96780750	96780750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2B-229	NM_000682	exon1	c.G1139T	p.C380F	AACCAGCAGAGCA	.	180	78	168	1	.	0	0	0	0	0
STARD7	56910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96858161	96858161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD7-68	NM_020151	exon6	c.G789T	p.R263S	TCTGACCCTGACG	.	111	48	96	0	.	0	0	0	0	0
INPP4A	3631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99181141	99181141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INPP4A-227	NM_001134224	exon20	c.G2082T	p.R694S	GCTGAGGAACTGC	.	143	30	158	0	.	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	101670676	101670676	+	Silent	SNP	G	G	A	rs78556703	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8-25	NM_001102426	exon4	c.C480T	p.V160V	GTAGGTGACCAGC	.	123	20	166	0	G|0.993;A|0.007	0	0	0	0	0
RFX8	731220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102038877	102038877	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145664	exon3	c.A130T	p.R44W	ATCTCCTGAATTC	.	133	37	157	0	.	0	0	0	0	0
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103090435	103090435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A4-92	NM_001011552	exon1	c.G217T	p.V73F	TATGAGGTCACTC	.	95	37	102	0	.	0	0	0	0	0
RGPD3	653489	bcgsc.ca	37	2	107029644	107029644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGPD3-23	NM_001144013	exon22	c.T5162A	p.I1721N	AAGAAAATGAACT	.	1002	221	983	7	.	0	0	0	0	0
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107041065	107041065	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGPD3-23	NM_001144013	exon20	c.C3358T	p.L1120L	GCTTCAGGTTCAT	.	27	12	40	0	.	0	0	0	0	0
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423334	107423334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GAL2-191	NM_032528	exon6	c.G1390T	p.E464X	ACAGCTCCGTCTG	.	157	68	196	0	.	0	0	0	0	0
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	107459875	107459875	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GAL2-191	NM_032528	exon2	c.G559T	p.E187X	CCTCCTCCAACAC	.	119	31	124	2	.	0	0	0	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	109384075	109384075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RANBP2-675	NM_006267	exon20	c.A7080C	p.L2360F	GATTTTACAGAAT	.	217	72	213	0	.	0	0	0	0	0
IL36G	56300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113736244	113736244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL36G-91	NM_019618	exon2	c.G29T	p.G10V	CTGATGGTGGAGG	.	163	75	191	0	.	0	0	0	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116535388	116535388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP10-142	NM_001178034	exon15	c.1351delC	p.P451fs	TCTTCTCCCAGAG	.	106	44	116	0	.	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125192069	125192069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon5	c.G538A	p.V180I	TCAGATGTTGCTG	.	71	28	93	0	.	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125284869	125284869	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon10	c.C1482A	p.P494P	GTGCCCCGACAAT	.	151	68	160	0	.	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125405388	125405388	+	Silent	SNP	C	C	A	rs200795882	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon13	c.C1927A	p.R643R	CGAGTGCGGGGCG	.	370	161	422	1	.	0	0	0	0	0
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128367426	128367426	+	Silent	SNP	C	C	A	rs202235279	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO7B-47	NM_001080527	exon24	c.C3027A	p.A1009A	CCAGGCCGCCCTG	.	163	36	173	0	C|0.999;T|0.000	0	0	0	0	0
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128890799	128890799	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGGT1-91	NM_020120	exon14	c.G1462C	p.V488L	CCTGGTGTTATTC	.	117	34	120	0	.	0	0	0	0	0
POTEF	728378	bcgsc.ca	37	2	130832803	130832803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POTEF-27	NM_001099771	exon17	c.C2242T	p.H748Y	TCTGATGCATGCC	.	489	68	443	3	.	0	0	0	0	0
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	130898790	130898790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC74B-90	NM_207310	exon4	c.G624T	p.E208D	GGGCTCCTCTTCC	.	353	111	349	0	.	0	0	0	0	0
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130911967	130911967	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMPD4-90	NM_017951	exon16	c.G1659T	p.L553L	GGGTGACAGGAAG	.	583	82	607	1	.	0	0	0	0	0
AMER3	205147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131519737	131519737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152698	exon2	c.G92T	p.R31M	CAGCCAGGGAGGG	.	133	65	150	1	.	0	0	0	0	0
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131803668	131803668	+	Missense_Mutation	SNP	G	G	A	rs138286451	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGEF4-292	NM_015320	exon14	c.G1979A	p.R660Q	GCAACCGGCCCCA	.	188	87	63	0	G|0.999;A|0.001	0	0	0	0	0
POTEE	445582	bcgsc.ca	37	2	132021613	132021613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001083538	exon15	c.C2585A	p.T862N	CCCACACTGTGCC	.	425	162	424	2	.	0	0	0	0	0
ANKRD30BL	554226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132912309	132912309	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TCTTTTCCTTATG	.	229	34	272	0	.	0	0	0	0	0
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133174919	133174919	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR39-226	NM_001508	exon1	c.T304A	p.S102T	ACCACGTCCAGCT	.	161	73	180	0	.	0	0	0	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	134275043	134275043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_207481	exon3	c.G55C	p.D19H	TGCTGTCTAGAGA	.	71	13	75	0	.	0	0	0	0	0
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135738654	135738654	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_025052	exon9	c.C3657G	p.T1219T	ACTGTGGGTGCCA	.	83	18	56	0	.	0	0	0	0	0
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814534	137814534	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7B-75	.	.	.	.	TGATGCTCCCATT	.	134	23	186	0	.	0	0	0	0	0
THSD7B	80731	broad.mit.edu;bcgsc.ca	37	2	138400132	138400132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7B-75	.	.	.	.	CTTACCCAGGAGA	.	77	7	91	0	.	0	0	0	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141055390	141055390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon84	c.C12954A	p.D4318E	ACATCTGTCTCCG	.	102	55	204	0	.	0	0	0	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141116494	141116494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon73	c.C11153A	p.T3718K	GGTCTCGTGGATG	.	45	17	83	0	.	0	0	0	0	0
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141128388	141128388	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon71	c.G10899A	p.K3633K	ATCTTCCTTACAT	.	83	33	83	1	.	0	0	0	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141245192	141245192	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon58	c.C9237T	p.D3079D	CTTAATGTCACTT	.	54	15	50	0	.	0	0	0	0	0
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149837965	149837965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF5C-69	NM_004522	exon14	c.G1459C	p.V487L	AAAGAAGTTCTCC	.	140	51	117	0	.	0	0	0	0	0
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152320981	152320981	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_018151	exon30	c.G4947T	p.V1649V	AAATGTGTGTGAG	.	78	21	107	0	.	0	0	0	0	0
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152321633	152321633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_018151	exon30	c.G5599A	p.G1867R	TGTTTAGGAGACT	.	47	15	48	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152521284	152521284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon43	c.A5332G	p.T1778A	TCATGGTGATTTG	.	163	76	189	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152537258	152537258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon30	c.G3028T	p.A1010S	TCTGGGCCTGGTT	.	151	54	121	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152563490	152563490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon13	c.G1057T	p.E353X	TCTTTTCATAGTC	.	38	11	41	0	.	0	0	0	0	0
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152727077	152727077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNB4-24	NM_001145798	exon8	c.G667T	p.V223L	CTAACACCACCGG	.	333	100	251	0	.	0	0	0	0	0
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154334873	154334873	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPRM-204	NM_019845	exon1	c.G207T	p.V69V	GAAGACCACGGTG	.	447	163	268	0	.	0	0	0	0	0
GALNT13	114805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154996920	154996920	+	Silent	SNP	G	G	A	rs114793552	bycluster;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT13-95	NM_052917	exon4	c.G213A	p.Q71Q	TGACCAGGAGAAA	.	147	53	146	0	G|1.000;A|0.000	0	0	0	0	0
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160205740	160205740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAZ2B-94	NM_013450	exon29	c.G4915C	p.G1639R	CCACACCAGTGGG	.	50	21	41	0	.	0	0	0	0	0
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162820704	162820704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A10-229	NM_001178015	exon22	c.C2922A	p.Y974X	TATATACCTAAGG	.	76	24	72	0	.	0	0	0	0	0
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163059625	163059625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAP-93	NM_004460	exon13	c.G1078A	p.D360N	TGGCATCATAGCT	.	95	29	100	0	.	0	0	0	0	0
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	165353720	165353720	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRB14-420	NM_004490	exon12	c.1294+1G>T	.	GACATACCCATGT	.	172	56	161	0	.	0	0	0	0	0
GRB14	2888	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	165353721	165353721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRB14-420	NM_004490	exon11	c.G1294T	p.A432S	ACATACCCATGTT	.	172	56	163	1	.	0	0	0	0	0
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165947786	165947786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_006922	exon28	c.C4877A	p.A1626D	ATCCTGGCAAGAC	.	240	72	243	0	.	0	0	0	0	0
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166032795	166032795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_001081676	exon3	c.C110A	p.P37H	TTTTTGGGCTTCT	.	113	44	92	0	.	0	0	0	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166198817	166198817	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2A-142	NM_001040143	exon14	c.G2400A	p.G800G	CACAGGGATCTTC	.	82	14	73	0	.	0	0	0	0	0
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166198894	166198894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2A-142	NM_001040143	exon14	c.T2477C	p.F826S	ATATTTTTGATGG	.	136	44	108	1	.	0	0	0	0	0
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535679	166535679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1174T	p.G392C	GGAGATGGCTTCG	.	73	28	75	0	.	0	0	0	0	0
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166535970	166535970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1465A	p.G489S	GCCTATGGTGCCT	.	255	81	224	0	.	0	0	0	0	0
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	166626967	166626967	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT3-92	NM_004482	exon2	c.244delA	p.I82X	CTCCTATTTGCAT	.	137	36	119	0	.	0	0	0	0	0
TTC21B	79809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166781171	166781171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21B-94	NM_024753	exon12	c.A1404T	p.Q468H	AAGAGGTTGCCCA	.	132	56	133	0	.	0	0	0	0	0
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167060640	167060640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN9A-181	NM_002977	exon26	c.G4566T	p.M1522I	TTCTACCATCATG	.	101	26	104	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100697	168100697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.C2795T	p.T932I	AGTACACACGAAC	.	154	50	174	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168107417	168107417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.C9515A	p.P3172H	CTTCCCCTTCTCC	.	127	40	111	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168107715	168107715	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.T9813G	p.Y3271X	TACTTATGTTCAT	.	175	65	137	0	.	0	0	0	0	0
CERS6	253782	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169404169	169404169	+	Silent	SNP	G	G	T	rs112858320	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_203463	exon2	c.G234T	p.P78P	TGCTCCGCCCAAT	.	105	45	94	0	G|0.997;A|0.003	0	0	0	0	0
G6PC2	57818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169759005	169759005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	G6PC2-91	NM_021176	exon2	c.A269T	p.Y90F	AGATTTACCCAAA	.	81	26	111	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170088312	170088312	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP2-175	NM_004525	exon31	c.C5139A	p.C1713X	AAGCAGGCAGAGA	.	443	151	419	0	.	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	20	17	0	0	G|0.766;T|0.234	0	0	0	0	0
HOXD13	3239	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	176957863	176957863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD13-658	NM_000523	exon1	c.G245T	p.R82L	CTGAGCGCACGGG	.	47	14	14	0	.	0	0	0	0	0
HOXD8	3234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176996244	176996244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD8-90	NM_019558	exon2	c.C777A	p.D259E	CAAGGACAAATTT	.	133	47	120	0	.	0	0	0	0	0
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179209068	179209068	+	Missense_Mutation	SNP	C	C	A	rs137879178	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL6-69	NM_001201480	exon12	c.C1043A	p.A348E	GGCTAGCGGCAGC	.	120	38	99	0	C|0.999;T|0.001	0	0	0	0	0
FKBP7	51661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179341878	179341878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FKBP7-90	NM_001135212	exon2	c.G284T	p.G95V	TCTAGGCCTTTTA	.	110	33	119	1	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179406032	179406032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon350	c.C97772A	p.P32591H	ACGATGGGTTTGG	.	184	68	188	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179422421	179422421	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon328	c.C87660A	p.I29220I	ATCACTGATGCCA	.	287	92	220	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179426459	179426459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.C84400A	p.R28134S	CATAGCGGTTTTC	.	160	52	192	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179426490	179426490	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.T84369A	p.S28123R	ATACTCACTTCCT	.	186	67	211	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179429435	179429435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G81424T	p.E27142X	CATACTCAAGGCC	.	126	22	132	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179430005	179430005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G80854A	p.V26952I	CCGTTACGGTGTA	.	289	95	259	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179437248	179437248	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.A73611G	p.T24537T	TGTGAGTGTGACA	.	121	44	92	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179482958	179482958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon252	c.C47227A	p.P15743T	CTACTGGCTCACC	.	99	33	109	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179505334	179505334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon221	c.C40657T	p.P13553S	CAACAGGTTTTGG	.	88	29	106	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179517194	179517194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon202	c.C39118T	p.P13040S	TAACAGGTGTGAC	.	94	30	91	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560965	179560965	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon114	c.T30834A	p.A10278A	TTCTTCAGCTTTA	.	19	7	22	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179598048	179598048	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon54	c.G15972A	p.E5324E	GTGCAGCTCAGCT	.	99	31	96	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179610937	179610937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_133379	exon46	c.C16190A	p.A5397D	AATACAGCATCTG	.	62	23	69	0	.	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179616717	179616717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_133379	exon46	c.C10410A	p.D3470E	AAAGGCGTCACGT	.	43	16	64	1	.	0	0	0	0	0
TTN	7273	bcgsc.ca;mdanderson.org	37	2	179634824	179634824	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon36	c.C8604A	p.V2868V	TTGCCCGACCACA	.	117	50	92	2	.	0	0	0	0	0
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183817593	183817593	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP1-92	NM_205842	exon23	c.A2449T	p.M817L	CTTTCATTGCAGG	.	152	46	122	0	.	0	0	0	0	0
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800948	185800948	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804A-163	NM_194250	exon4	c.T825C	p.T275T	GAAAACTAACTCT	.	60	19	63	0	.	0	0	0	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186670638	186670638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSIP2-90	NM_173651	exon17	c.T16872A	p.N5624K	TGAGAATGTATCA	.	139	56	131	0	.	0	0	0	0	0
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187625878	187625878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM171B-141	NM_177454	exon7	c.T1051C	p.Y351H	ACTGCCTACCACA	.	423	175	377	0	.	0	0	0	0	0
CALCRL	10203	broad.mit.edu	37	2	188245197	188245197	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALCRL-523	NM_001271751	exon6	c.G405A	p.V135V	TACCTTCACTTTC	.	59	4	60	0	.	0	0	0	0	0
PMS1	5378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190719368	190719368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMS1-1396	NM_001128144	exon9	c.G1370C	p.C457S	AAACTTGTTTTAT	.	98	30	101	0	.	0	0	0	0	0
MSTN	2660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190927030	190927030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSTN-650	NM_005259	exon1	c.G293T	p.R98M	TCATCCCTCTGGA	.	208	87	176	1	.	0	0	0	0	0
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190927320	190927320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSTN-650	NM_005259	exon1	c.G3T	p.M1I	TTTTTGCATGATT	.	36	13	31	0	.	0	0	0	0	0
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192863915	192863915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon6	c.T556A	p.C186S	GAGAACAGTCAAT	.	97	34	80	0	.	0	0	0	0	0
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	193044393	193044393	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon5	c.439+1G>T	.	CTCCTACCTCCAT	.	151	60	207	0	.	0	0	0	0	0
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196737099	196737099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH7-102	NM_018897	exon40	c.A6508T	p.T2170S	CTGGAGTAGGCAA	.	168	54	128	1	.	0	0	0	0	0
CCDC150	284992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197511082	197511082	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080539	exon2	c.A30G	p.T10T	AACTACAGTGTCC	.	256	89	214	1	.	0	0	0	0	0
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950268	198950268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCL1-228	NM_006226	exon2	c.C2027A	p.P676Q	CGGGTCCAATGAT	.	78	20	93	0	.	0	0	0	0	0
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	204039945	204039945	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NBEAL1-92	NM_001114132	exon41	c.G6312T	p.G2104G	TGCGGGGGTCATG	.	230	75	181	1	.	0	0	0	0	0
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207169902	207169902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G650T	p.S217I	CAGTTAGCAAATG	.	117	36	129	0	.	0	0	0	0	0
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207170268	207170268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G1016A	p.C339Y	TGGATTGTACCCA	.	46	13	29	0	.	0	0	0	0	0
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207174022	207174022	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.T4770G	p.T1590T	CTCTACTCCCTCA	.	46	18	44	0	.	0	0	0	0	0
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207174333	207174333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G5081T	p.R1694I	ATCCAAGAAATGC	.	69	28	50	0	.	0	0	0	0	0
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207454220	207454220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM23-228	NM_003812	exon21	c.G1940T	p.W647L	ACCGGTGGATTCA	.	104	38	81	0	.	0	0	0	0	0
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207527859	207527859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYTN-23	NM_001093730	exon11	c.C1401A	p.S467R	TGTTTGGCTTTGT	.	307	100	264	0	.	0	0	0	0	0
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207655353	207655353	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FASTKD2-118	NM_001136193	exon11	c.A1956G	p.R652R	CCCCAGAGGATTC	.	59	13	63	0	.	0	0	0	0	0
CRYGC	1420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208992943	208992943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRYGC-90	NM_020989	exon3	c.T509C	p.V170A	TCCACCACTCTCC	.	102	40	93	1	.	0	0	0	0	0
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211457659	211457659	+	Silent	SNP	C	C	G	rs148322072	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon12	c.C1161G	p.T387T	GGTCACCCCGGGG	.	48	21	61	0	C|1.000;T|0.000	0	0	0	0	0
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211512667	211512667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon27	c.G3240T	p.K1080N	TGTCAAGATCATG	.	475	148	459	2	.	0	0	0	0	0
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211527846	211527846	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon34	c.3946-1G>T	.	CCAACAGGCTCCC	.	41	12	33	0	.	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212285242	212285242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon25	c.A3059T	p.E1020V	TACTCCTCAGCAT	.	76	38	95	0	.	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212578300	212578300	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon8	c.G957T	p.G319G	TTTAATCCCATTT	.	99	38	63	0	.	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212589908	212589908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon6	c.G634T	p.V212L	CACACACCGTCCT	.	189	81	184	0	.	0	0	0	0	0
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212812187	212812187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon3	c.G389T	p.G130V	TGAAGTCCAAAGT	.	116	44	90	1	.	0	0	0	0	0
PRKAG3	53632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219695074	219695074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG3-659	NM_017431	exon4	c.C260T	p.T87I	AGCCCGGTGGACT	.	203	63	153	0	.	0	0	0	0	0
WNT10A	80326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219746981	219746981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT10A-523	NM_025216	exon2	c.A212G	p.Q71R	GGCGGCAGATGGA	.	312	112	248	1	.	0	0	0	0	0
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220098512	220098512	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKZF1-92	NM_001042410	exon8	c.C895G	p.P299A	CGTGCTCCCCGCT	.	115	23	100	0	.	0	0	0	0	0
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220159708	220159708	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRN-229	NM_002846	exon19	c.G2664A	p.L888L	GAAGTCCAGCAGG	.	109	40	28	0	.	0	0	0	0	0
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220172174	220172174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRN-229	NM_002846	exon3	c.T272G	p.M91R	TGGGACATGAGTT	.	57	22	55	1	.	0	0	0	0	0
ASIC4	55515	ucsc.edu;bcgsc.ca	37	2	220379239	220379239	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182847	exon1	c.G174T	p.R58R	GCAGCGGCAGAGG	.	359	129	203	2	.	0	0	0	0	0
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220405282	220405282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHPF-90	NM_024536	exon4	c.G1151T	p.R384L	GCCGGGCGGGATG	.	191	61	109	0	.	0	0	0	0	0
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220419228	220419228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSL1-71	NM_015311	exon15	c.C4844A	p.S1615Y	CGCAGGGAATCCG	.	384	130	318	1	.	0	0	0	0	0
OBSL1	23363	hgsc.bcm.edu	37	2	220435375	220435375	+	Silent	SNP	G	G	A	rs1061399	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSL1-71	NM_001173431	exon1	c.C580T	p.L194L	TGCGCAGTGCCAG	.	7	7	0	0	G|0.621;A|0.379	0	0	0	0	0
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220493241	220493241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A3-157	NM_005070	exon3	c.G166T	p.A56S	CCCCCGGCCTGGG	.	467	161	316	0	.	0	0	0	0	0
SCG2	7857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224463929	224463929	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCG2-69	NM_003469	exon2	c.G72A	p.G24G	TTCAGCCCCAGAG	.	177	63	154	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228858308	228858308	+	Missense_Mutation	SNP	G	G	T	rs192502309		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon9	c.C4663A	p.L1555I	TGCCAAGACTGCT	.	200	69	163	0	G|0.999;T|0.001	0	0	0	0	0
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882596	228882596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G2974T	p.V992L	TCCTCACAGCGGT	.	105	34	103	1	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883407	228883407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.C2163G	p.F721L	CTTCTTGAACGTG	.	118	37	97	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883709	228883709	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.A1861T	p.K621X	CCTCCTTGAGCAA	.	157	57	140	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228883760	228883760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G1810C	p.G604R	CTAAACCACAAAG	.	102	38	111	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884194	228884194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G1376A	p.S459N	GCATCACTGCCAT	.	89	35	69	0	.	0	0	0	0	0
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884765	228884765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G805T	p.E269X	TGTCTTCCAAAGC	.	109	34	95	0	.	0	0	0	0	0
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	229890643	229890643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PID1-94	NM_017933	exon4	c.A452T	p.E151V	GTGGCCTCCCCTT	.	254	80	219	0	.	0	0	0	0	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230723756	230723756	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIP12-572	NM_004238	exon3	c.G633C	p.S211S	GGAGGCCGAGGCT	.	88	27	72	0	.	0	0	0	0	0
C2orf72	257407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	231906104	231906104	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001144994	exon2	c.728delC	p.A243fs	TTGCTGCCTGCAG	.	108	35	73	0	.	0	0	0	0	0
ALPP	250	bcgsc.ca	37	2	233245385	233245385	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPP-91	NM_001632	exon8	c.G918C	p.L306L	CACACTGGACCCC	.	528	185	405	4	.	0	0	0	0	0
ALPPL2	251	broad.mit.edu	37	2	233273466	233273466	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPPL2-91	NM_031313	exon8	c.G909C	p.L303L	CACACTGGACCCC	.	125	74	82	1	.	0	0	0	0	0
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233322794	233322794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPI-90	NM_001631	exon8	c.C943A	p.L315M	GCTGCCCTGCGCC	.	505	180	339	1	.	0	0	0	0	0
SAG	6295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234229340	234229340	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAG-23	NM_000541	exon5	c.C246A	p.T82T	CTTGACCTTCCGC	.	149	55	118	0	.	0	0	0	0	0
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234621950	234621950	+	Missense_Mutation	SNP	C	C	A	rs200200998	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT1A5-3	NM_019078	exon1	c.C313A	p.H105N	ACAGAACATCTTC	.	116	36	128	0	C|1.000;T|0.000	0	0	0	0	0
SH3BP4	23677	ucsc.edu;bcgsc.ca	37	2	235951205	235951205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3BP4-94	NM_014521	exon4	c.G1792T	p.E598X	GACCAGGAGGCCA	.	159	57	147	2	.	0	0	0	0	0
COL6A3	1293	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238280884	238280884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL6A3-526	NM_004369	exon9	c.T3776A	p.V1259D	TAGTCAACCAGCC	.	110	55	120	1	.	0	0	0	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237714	239237715	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP1-228	NM_015650	exon5	c.646_647del	p.216_216del	GAAGGGGAGAGAG	.	249	7	198	0	.	0	0	0	0	0
NDUFA10	4705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	240951052	240951052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFA10-514	NM_004544	exon6	c.C731G	p.T244S	AGAAAGGTTTTCT	.	92	31	125	1	.	0	0	0	0	0
OTOS	150677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241078654	241078654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOS-68	NM_148961	exon4	c.G203A	p.R68Q	AAGGTTCGGGCCA	.	229	31	227	0	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241658532	241658532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon47	c.G5105T	p.R1702L	TAGGGGCGCCGCA	.	269	104	164	0	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	291	13	225	0	.	0	0	0	0	0
AGXT	189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241812461	241812461	+	Missense_Mutation	SNP	G	G	T	rs34664134	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGXT-90	NM_000030	exon5	c.G590T	p.R197L	TGGACCGGCAAGG	.	141	46	107	0	G|0.993;A|0.007	0	0	0	0	0
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242066763	242066763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PASK-536	NM_015148	exon10	c.G1567T	p.E523X	GGCTCTCTATTGC	.	106	41	87	0	.	0	0	0	0	0
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242192402	242192402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDLBP-290	NM_005336	exon11	c.A1342T	p.R448W	GGTGCCTGTGGAA	.	220	68	192	0	.	0	0	0	0	0
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242606247	242606247	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_178326	exon8	c.G726T	p.T242T	GGAGACGCTGAAG	.	63	22	48	0	.	0	0	0	0	0
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1610940	1610940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIRPG-23	NM_018556	exon5	c.C1094G	p.S365C	GTAAGGGATGATG	.	40	12	78	0	.	0	0	0	0	0
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2398147	2398147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGM6-94	NM_198994	exon10	c.A1606G	p.I536V	GCCACCATCCTCT	.	40	11	26	0	.	0	0	0	0	0
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2542507	2542507	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMC2-93	NM_080751	exon4	c.A405T	p.S135S	CAGGTCATCCTCC	.	120	26	166	0	.	0	0	0	0	0
PTPRA	5786	broad.mit.edu	37	20	3008372	3008372	+	Missense_Mutation	SNP	C	C	G	rs138028158	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRA-227	NM_002836	exon24	c.C1805G	p.S602C	AGGACTCCTATAT	.	98	4	88	0	C|0.999;G|0.001	0	0	0	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3218585	3218585	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A11-91	NM_001174090	exon1	c.T126A	p.A42A	CGCTGCAGCGAGA	.	54	17	88	0	.	0	0	0	0	0
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3624815	3624815	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATRN-154	NM_139321	exon28	c.C4065T	p.P1355P	CAAACCCATTGCA	.	78	25	127	0	.	0	0	0	0	0
PROKR2	128674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5283022	5283022	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROKR2-94	NM_144773	exon2	c.G819T	p.T273T	CAGGACCGTCTTC	.	132	42	167	0	.	0	0	0	0	0
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	5903995	5903995	+	Missense_Mutation	SNP	G	G	T	rs200027232	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.G1205T	p.G402V	GATATGGTGAAGA	.	21	5	51	0	G|0.999;A|0.001	0	0	0	0	0
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	7875859	7875859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAO1-93	NM_017545	exon5	c.G734T	p.R245M	GCCTCCCTGGCAT	.	68	17	88	0	.	0	0	0	0	0
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8770166	8770166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB1-297	NM_015192	exon30	c.G3280T	p.G1094C	TTTAGGGAGAAGA	.	91	35	155	0	.	0	0	0	0	0
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9417684	9417684	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB4-274	NM_001172646	exon29	c.A2649G	p.K883K	TTCCAAAAATGAC	.	85	24	133	0	.	0	0	0	0	0
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9543657	9543657	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAK7-1434	NM_177990	exon6	c.G1497T	p.R499R	GTAATCCCGCATG	.	107	32	124	1	.	0	0	0	0	0
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13752040	13752040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESF1-91	NM_001276380	exon6	c.G1340A	p.S447N	ATTTTACTAGCTG	.	71	14	90	0	.	0	0	0	0	0
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17617312	17617312	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RRBP1-92	NM_004587	exon6	c.G948T	p.V316V	CCGGGCCACCAGC	.	81	20	89	0	.	0	0	0	0	0
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18434400	18434400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099407	exon5	c.G450T	p.W150C	AACATTCCAGCTG	.	48	11	73	0	.	0	0	0	0	0
C20orf78	100128496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18790706	18790706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C20orf78-71	NM_001242671	exon3	c.A170T	p.E57V	CTGTCTTCTGAGG	.	103	31	164	0	.	0	0	0	0	0
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20501596	20501596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RALGAPA2-24	NM_020343	exon31	c.C4049T	p.S1350L	TCTGCTGATGAAT	.	95	24	130	0	.	0	0	0	0	0
FOXA2	3170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	22563160	22563160	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXA2-228	NM_021784	exon2	c.C720T	p.T240T	GTGCAGGGTCCAG	.	88	48	101	0	.	0	0	0	0	0
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065618	23065618	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD93-153	NM_012072	exon1	c.T1212C	p.D404D	TGAGCCATCTGTG	.	224	101	237	0	.	0	0	0	0	0
CST8	10047	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472348	23472348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST8-90	NM_005492	exon2	c.C44T	p.P15L	CCATTCCCCTGGC	.	147	73	121	1	.	0	0	0	0	0
CST8	10047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23472361	23472361	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST8-90	NM_005492	exon2	c.G57T	p.V19V	CCTGGTGGCCAGG	.	164	43	129	0	.	0	0	0	0	0
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23584212	23584212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST9-91	NM_001008693	exon2	c.T415C	p.C139R	CCATGCAGCATCC	.	216	45	231	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628283	29628283	+	RNA	SNP	G	G	C	rs200164543		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FRG1B-22	.	.	.	.	AGCAGGGGACATA	.	530	14	584	5	.	0	0	0	0	0
BCL2L1	598	broad.mit.edu;bcgsc.ca	37	20	30309465	30309465	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCL2L1-1084	NM_138578	exon2	c.557delG	p.G186fs	CAGCCGCCGTTCT	.	77	11	82	0	.	0	0	0	0	0
BPIFB6	128859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31631832	31631832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_174897	exon15	c.G1341T	p.M447I	CCTGATGCTGGAC	.	88	17	88	0	.	0	0	0	0	0
CDK5RAP1	51654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31967333	31967333	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK5RAP1-230	NM_016408	exon8	c.C1041G	p.V347V	TCTGGAGACCTGA	.	131	17	143	0	.	0	0	0	0	0
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33169461	33169461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIGU-226	NM_080476	exon10	c.C942A	p.F314L	CATGAAGAAGATG	.	134	9	133	0	.	0	0	0	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	88	3	75	1	.	0	0	0	0	0
ACSS2	55902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33508448	33508448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSS2-226	NM_001076552	exon10	c.G1118T	p.G373V	ACATTGGTTGGAT	.	105	42	124	0	.	0	0	0	0	0
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34090551	34090551	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP250-27	NM_007186	exon30	c.G4354T	p.E1452X	CAACGGGAAATGC	.	149	77	194	0	.	0	0	0	0	0
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34242103	34242103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBM12-93	NM_001198840	exon2	c.A1142T	p.Q381L	ACCCACTGTCTTT	.	90	17	101	0	.	0	0	0	0	0
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34535448	34535448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF20-515	NM_016436	exon18	c.C2938T	p.P980S	GAGCCCCCTGAGC	.	112	50	90	0	.	0	0	0	0	0
CNBD2	140894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34568458	34568458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_080834	exon4	c.C321T	p.V107V	GGCCGTCTGTAAC	.	193	46	162	1	.	0	0	0	0	0
PPP1R16B	26051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37531363	37531363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R16B-228	NM_001172735	exon6	c.G624A	p.M208I	GCAGATGATTGCG	.	217	91	173	1	.	0	0	0	0	0
MAFB	9935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	39316536	39316536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAFB-846	NM_005461	exon1	c.C955G	p.P319A	ACTCGGGAGAGGA	.	59	21	59	0	.	0	0	0	0	0
PTPRT	11122	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40980823	40980823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRT-664	NM_007050	exon10	c.G1663T	p.G555C	ACAGACCCACAAA	.	154	66	145	2	.	0	0	0	0	0
L3MBTL1	26013	hgsc.bcm.edu	37	20	42143400	42143400	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	L3MBTL1-227	NM_032107	exon4	c.G420T	p.A140A	CGAGGCGGGCCCC	.	102	60	6	0	.	0	0	0	0	0
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42315672	42315672	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBL2-415	NM_002466	exon5	c.G460C	p.G154R	GTGCTGGGCAACC	.	118	57	87	0	.	0	0	0	0	0
TOX2	84969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42683068	42683068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX2-91	NM_001098798	exon5	c.C808T	p.Q270X	GACACTCAGGCCG	.	174	75	170	0	.	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348703	43348703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WISP2-130	NM_003881	exon2	c.C226A	p.L76M	CAGGGCCTGGTCT	.	24	14	3	0	.	0	0	0	0	0
RIMS4	140730	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43384921	43384921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS4-94	NM_001205317	exon6	c.G667C	p.E223Q	CCAGCTCCTCCAG	.	139	63	147	0	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	10	10	0	0	T|0.311;C|0.689	0	0	0	0	0
ZNF334	55713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130422	45130422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF334-92	NM_018102	exon5	c.G1556T	p.C519F	TCACTACACTCAT	.	127	27	134	1	.	0	0	0	0	0
OCSTAMP	128506	broad.mit.edu;mdanderson.org	37	20	45170432	45170432	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_080721	exon3	c.C1182G	p.A394A	ACGCCGGGCGGGT	.	39	15	14	0	.	0	0	0	0	0
OCSTAMP	128506	ucsc.edu;bcgsc.ca	37	20	45174698	45174698	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_080721	exon2	c.G315T	p.L105L	TGCAAACAGGCAG	.	166	77	160	3	.	0	0	0	0	0
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354555	45354555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC2A10-91	NM_030777	exon2	c.G880T	p.A294S	GACCGTGCAGGCC	.	167	39	149	0	.	0	0	0	0	0
EYA2	2139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45700881	45700881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA2-523	NM_172110	exon6	c.G473T	p.S158I	TCGGGAGTGTGCA	.	163	29	137	1	.	0	0	0	0	0
EYA2	2139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45771748	45771748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA2-523	NM_172110	exon10	c.C939A	p.F313L	GATCTTCAACCTT	.	137	65	151	0	.	0	0	0	0	0
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45976616	45976616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZMYND8-252	NM_183048	exon2	c.C69G	p.I23M	AGTAGAGATATCC	.	54	15	53	0	.	0	0	0	0	0
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46311853	46311853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_001161841	exon7	c.G949T	p.D317Y	CGTGGTCGGCGGT	.	279	55	212	0	.	0	0	0	0	0
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46385940	46385940	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_001161841	exon2	c.G168T	p.V56V	CAGCTCCACATCC	.	73	31	62	0	.	0	0	0	0	0
PREX1	57580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47262418	47262418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX1-231	NM_020820	exon26	c.C3483G	p.H1161Q	GGTGTCGTGGCCT	.	154	65	188	1	.	0	0	0	0	0
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47317415	47317415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX1-231	NM_020820	exon7	c.C793A	p.L265I	CTGTGAGGTTGGA	.	127	63	102	0	.	0	0	0	0	0
B4GALT5	9334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48257052	48257052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B4GALT5-91	NM_004776	exon6	c.A757T	p.R253W	AATGCCTCGGCAT	.	55	27	50	0	.	0	0	0	0	0
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50408431	50408431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL4-92	NM_020436	exon2	c.C591A	p.S197R	ATCCGCGCTCCGC	.	88	15	88	0	.	0	0	0	0	0
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56139391	56139391	+	Silent	SNP	G	G	T	rs200264001	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCK1-227	NM_002591	exon7	c.G1128T	p.P376P	TGAGCCGCTAGCT	.	268	54	277	0	G|0.999;A|0.000	0	0	0	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57428374	57428374	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNAS-4767	NM_080425	exon1	c.54delC	p.I18fs	CGATATCCCCCCT	.	111	51	147	0	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57768917	57768917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C2843A	p.A948E	CTCAGGCAGAGAC	.	68	34	74	0	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57769069	57769069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.G2995T	p.G999C	TCCCCAGGTGAGG	.	34	13	32	0	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57769218	57769218	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C3144A	p.P1048P	GGCTCCCAGGGAG	.	93	20	66	0	.	0	0	0	0	0
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57828115	57828115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon4	c.C4110A	p.D1370E	AGGTGACTGCAGA	.	187	89	146	1	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57829495	57829495	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon5	c.T4731A	p.A1577A	TTCAGCTAGTTCA	.	211	86	229	0	.	0	0	0	0	0
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58349336	58349336	+	Missense_Mutation	SNP	G	G	T	rs143127476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHACTR3-93	NM_080672	exon7	c.G965T	p.R322L	AGAAGCGGCTGGA	.	117	27	124	0	G|0.999;A|0.000	0	0	0	0	0
FAM217B	63939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58519072	58519072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_022106	exon4	c.A74C	p.Q25P	AATCCCAAGTACC	.	134	25	191	2	.	0	0	0	0	0
CDH4	1002	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60448951	60448951	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH4-282	NM_001794	exon7	c.C1045A	p.R349R	CTGGACCGAGAGG	.	150	40	102	1	.	0	0	0	0	0
TAF4	6874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60581714	60581714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF4-93	NM_003185	exon7	c.C2075T	p.A692V	GTGAGCGCAGTGG	.	175	42	19	0	.	0	0	0	0	0
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60913072	60913072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA5-93	NM_005560	exon14	c.G1891T	p.A631S	GCTCACCTTGGCA	.	236	119	116	0	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61444261	61444261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGFR-68	NM_007346	exon7	c.G1294T	p.G432C	GAAGTGGGCGGTC	.	123	32	56	0	.	0	0	0	0	0
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61512594	61512594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIDO1-96	NM_001193369	exon16	c.G4714T	p.E1572X	CCCCCTCACCGGT	.	42	9	18	0	.	0	0	0	0	0
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61834292	61834292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDF1-92	NM_017798	exon4	c.A1000G	p.R334G	CGTTTCTGTTGCG	.	72	21	62	0	.	0	0	0	0	0
BIRC7	79444	broad.mit.edu	37	20	61869765	61869765	+	Missense_Mutation	SNP	G	G	T	rs199795769	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC7-659	NM_139317	exon3	c.G467T	p.R156L	TGCTCCGGTCAAA	.	46	10	38	1	.	0	0	0	0	0
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61869820	61869820	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC7-659	NM_139317	exon3	c.G522T	p.L174L	GCTGCTGGGCTCC	.	88	42	72	0	.	0	0	0	0	0
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61919061	61919061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARFGAP1-91	NM_175609	exon14	c.G1081A	p.D361N	TGCGCGGACACCT	.	167	39	125	0	.	0	0	0	0	0
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10920084	10920084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199261	exon19	c.G1170T	p.Q390H	ACTTACCTGAGAA	.	19	7	36	0	.	0	0	0	0	0
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	10944670	10944670	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199261	exon11	c.C564A	p.P188P	ATACCTGGGAATA	.	304	29	359	0	.	0	0	0	0	0
BAGE2	85319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	11058188	11058188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182482	exon3	c.G252T	p.Q84H	TGTGTTCTGGACA	.	220	22	249	0	.	0	0	0	0	0
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31311813	31311813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK1-137	NM_175611	exon1	c.G6C	p.E2D	GCCGTGCTCCATC	.	99	69	79	0	.	0	0	0	0	0
KRTAP24-1	643803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31655215	31655215	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP24-1-68	NM_001085455	exon1	c.T36A	p.P12P	GACACCAGGATAG	.	276	181	219	2	.	0	0	0	0	0
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31797786	31797786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP13-3-92	NM_181622	exon1	c.C445G	p.P149A	AGATTGGATGGCA	.	111	83	116	0	.	0	0	0	0	0
KRTAP11-1	337880	ucsc.edu;bcgsc.ca	37	21	32253540	32253540	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP11-1-91	NM_175858	exon1	c.C304A	p.R102R	GCGGCCGGCTGTA	.	363	261	289	3	.	0	0	0	0	0
DSCR6	53820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38385914	38385914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCR6-153	NM_018962	exon3	c.G235T	p.V79L	CATCCTGTAAGGT	.	109	81	85	0	.	0	0	0	0	0
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41719682	41719682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCAM-101	NM_001271534	exon6	c.G1125T	p.M375I	TTTGACCATGTGA	.	152	115	158	0	.	0	0	0	0	0
WDR4	10785	bcgsc.ca	37	21	44296862	44296862	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR4-91	NM_018669	exon2	c.C105G	p.L35L	GATGAAGAGGCTG	.	28	19	35	1	.	0	0	0	0	0
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45795727	45795727	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon6	c.C783T	p.P261P	CTTCCCCGCCGAG	.	161	120	133	0	.	0	0	0	0	0
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45845667	45845667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon25	c.C3752A	p.P1251H	ACTGCCCTGTCAC	.	259	171	108	0	.	0	0	0	0	0
TSPEAR	54084	ucsc.edu;bcgsc.ca	37	21	45987802	45987802	+	Missense_Mutation	SNP	C	C	A	rs151001222	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSPEAR-244	NM_144991	exon2	c.G170T	p.R57L	AGTCCCCGTGCAC	.	189	150	139	2	C|0.998;T|0.002	0	0	0	0	0
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46047799	46047799	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198690	exon1	c.T711G	p.P237P	CCGCCCTGTGTGC	.	189	144	97	0	.	0	0	0	0	0
C21orf67	84536	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46354995	46354995	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CATCCCCTCTCGT	.	75	58	90	1	.	0	0	0	0	0
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47423043	47423043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL6A1-91	NM_001848	exon34	c.G2444T	p.C815F	AGAAGTGTCCAGA	.	184	125	121	0	.	0	0	0	0	0
PCNT	5116	broad.mit.edu	37	21	47831434	47831434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCNT-141	NM_006031	exon28	c.C5447A	p.A1816D	GCCAGGCCCTGGA	.	66	6	23	0	.	0	0	0	0	0
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19220842	19220842	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLTCL1-230	NM_001835	exon10	c.1369-1G>T	.	CTCCAGCTGTGGT	.	89	68	81	1	.	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	43	9	41	0	.	0	0	0	0	0
PRAME	23532	ucsc.edu;bcgsc.ca	37	22	22890510	22890510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAME-515	NM_206954	exon6	c.C1509A	p.C503X	ACAGGGGCACAGG	.	122	79	126	2	.	0	0	0	0	0
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22890729	22890729	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAME-515	NM_206954	exon6	c.C1290A	p.L430L	CCCGATGAGGTGC	.	70	40	50	0	.	0	0	0	0	0
IGLL3P	91353	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25714246	25714246	+	RNA	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGLL3P-91	.	.	.	.	CGCGGCTCCTGGA	.	162	110	121	0	.	0	0	0	0	0
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26164759	26164759	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO18B-142	NM_032608	exon4	c.G876T	p.T292T	AAACACGGTGGAA	.	146	92	161	3	.	0	0	0	0	0
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26422797	26422797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO18B-142	NM_032608	exon43	c.C6857A	p.A2286D	CTGGGGCCTCCAC	.	101	68	130	1	.	0	0	0	0	0
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26761520	26761520	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEZ6L-95	NM_021115	exon13	c.C2782G	p.P928A	CCCCTGCCCGTGT	.	117	81	93	1	.	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28196123	28196123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MN1-993	NM_002430	exon1	c.G409T	p.G137C	CGCCGCCGTAGCC	.	13	11	1	0	.	0	0	0	0	0
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28559432	28559432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145418	exon6	c.G1089A	p.V363V	AATATACACAGCT	.	125	74	128	0	.	0	0	0	0	0
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29745300	29745300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AP1B1-92	NM_001127	exon11	c.G1344T	p.M448I	CCAGATCATGGCA	.	73	47	103	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	CTGAGAAGGCCAA	.	261	89	268	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFH-90	NM_021076	exon4	c.1970_1975del	p.657_659del	CAGAGAAGGAAGA	.	304	10	292	0	.	0	0	0	0	0
C22orf42	150297	ucsc.edu;bcgsc.ca	37	22	32547007	32547007	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C22orf42-92	NM_001010859	exon7	c.466-1G>C	.	TATTTCCTGCAGT	.	270	185	317	2	.	0	0	0	0	0
BPIFC	254240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32828365	32828365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_174932	exon10	c.G1144C	p.D382H	CGAAGTCCATGGA	.	208	152	173	2	.	0	0	0	0	0
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33712075	33712075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARGE-92	NM_004737	exon12	c.G1447T	p.D483Y	ACCTGTCCATGGA	.	187	127	186	1	.	0	0	0	0	0
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	37465237	37465237	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS6-292	NM_153609	exon16	c.G2016A	p.L672L	GAGCTGCAGCAGC	.	139	78	57	0	.	0	0	0	0	0
SSTR3	6753	hgsc.bcm.edu	37	22	37603296	37603296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SSTR3-522	NM_001051	exon2	c.G547A	p.G183R	GCACTCCCGAGAA	.	53	16	0	0	.	0	0	0	0	0
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38043305	38043305	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3BP1-90	NM_018957	exon12	c.A1068G	p.P356P	GCTGCCAGAGCCT	.	98	41	100	0	.	0	0	0	0	0
APOBEC3F	200316	bcgsc.ca	37	22	39440149	39440149	+	Missense_Mutation	SNP	C	C	T	rs5750728	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APOBEC3F-226	NM_001006666	exon3	c.C233T	p.A78V	AGTGCGCCCCACC	.	182	7	174	0	C|0.534;T|0.466	0	0	0	0	0
FAM83F	113828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40417793	40417793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83F-153	NM_138435	exon4	c.G1279A	p.A427T	GGAGAAGCGGCCC	.	154	37	88	0	.	0	0	0	0	0
XPNPEP3	63929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41278040	41278040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPNPEP3-68	NM_022098	exon3	c.A448T	p.I150L	AAAGCCATACTTT	.	108	49	127	1	.	0	0	0	0	0
ZC3H7B	23264	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41723297	41723297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZC3H7B-90	NM_017590	exon5	c.G373C	p.A125P	GCACGCGCTCTCA	.	135	34	96	1	.	0	0	0	0	0
C22orf46	79640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42089695	42089695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001142964	exon2	c.C445T	p.P149S	TCTGAGCCCATCT	.	68	14	69	0	.	0	0	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42114182	42114182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G637T	p.E213X	GCAGCTGAGATGC	.	94	16	86	0	.	0	0	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42114184	42114184	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G639A	p.E213E	AGCTGAGATGCTT	.	96	17	86	0	.	0	0	0	0	0
NFAM1	150372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42781209	42781209	+	Missense_Mutation	SNP	G	G	T	rs200124807	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFAM1-90	NM_145912	exon6	c.C771A	p.F257L	ATCTTCGAATCTA	.	63	32	76	0	G|1.000;A|0.000	0	0	0	0	0
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43610215	43610215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCUBE1-93	NM_173050	exon16	c.A1934T	p.Q645L	ACACACTGGCCGA	.	211	94	194	0	.	0	0	0	0	0
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	44151684	44151684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon6	c.C469T	p.R157C	ATGTGCGGCAGCA	.	33	17	48	0	.	0	0	0	0	0
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44161245	44161245	+	Missense_Mutation	SNP	G	G	A	rs139001785		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon5	c.C380T	p.P127L	AGGTACGGTACAG	.	189	73	203	0	G|0.999;A|0.000	0	0	0	0	0
EFCAB6	64800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44161247	44161247	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon5	c.A378T	p.V126V	GTACGGTACAGTA	.	189	74	201	1	.	0	0	0	0	0
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44602230	44602230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARVG-90	NM_001137606	exon14	c.G920T	p.R307M	CACTGAGGGTGCT	.	278	117	182	0	.	0	0	0	0	0
KIAA0930	23313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45598876	45598876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0930-90	NM_015264	exon7	c.G862A	p.E288K	CCCGCTCGTGCAT	.	96	11	81	0	.	0	0	0	0	0
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45691536	45691536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UPK3A-90	NM_006953	exon6	c.C800A	p.T267K	CCTACACGTCCGT	.	72	25	55	0	.	0	0	0	0	0
RIBC2	26150	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45822021	45822021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIBC2-90	.	.	.	.	AGATCCGCCTAGT	.	66	31	77	0	.	0	0	0	0	0
GTSE1	51512	broad.mit.edu	37	22	46712004	46712004	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GTSE1-187	NM_016426	exon7	c.T1127G	p.M376R	GCAGAATGGGACC	.	108	9	114	11	.	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46835306	46835306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELSR1-525	NM_014246	exon3	c.G4186A	p.E1396K	AGTGCTCTCCTGG	.	84	18	54	0	.	0	0	0	0	0
C22orf34	348645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50018299	50018299	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CCGTTGGTGGCCT	.	62	24	68	1	.	0	0	0	0	0
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50714236	50714236	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB2-211	NM_012401	exon37	c.T5414A	p.I1805N	TTGATGATCTGAG	.	119	51	87	1	.	0	0	0	0	0
ARSA	410	broad.mit.edu;bcgsc.ca	37	22	51065667	51065667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARSA-92	NM_001085426	exon3	c.G392T	p.G131V	TCAGGCCCCACCC	.	87	43	46	1	.	0	0	0	0	0
ACR	49	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51183082	51183082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACR-90	NM_001097	exon5	c.G713A	p.G238E	GACAGGGAGACAG	.	232	55	186	0	.	0	0	0	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	361487	361487	+	Missense_Mutation	SNP	C	C	G	rs139673243		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHL1-583	NM_001253388	exon1	c.C28G	p.L10V	AGAGGACTAATCG	.	30	19	43	0	C|1.000;G|0.000	0	0	0	0	0
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4693830	4693830	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITPR1-710	NM_001099952	exon11	c.G879T	p.R293R	ATGTCGGGGCGGA	.	163	110	138	0	.	0	0	0	0	0
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	6903300	6903300	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM7-526	NM_000844	exon1	c.G225T	p.G75G	AAACGGGATCCAC	.	246	165	173	1	.	0	0	0	0	0
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9483874	9483874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETD5-70	NM_001080517	exon10	c.G1022T	p.R341L	ATGCCCGTACTTT	.	65	41	68	0	.	0	0	0	0	0
ARPC4	10093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9839433	9839433	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARPC4-90	NM_001198780	exon2	c.C151A	p.R51R	GTGGAACGACACA	.	87	56	76	1	.	0	0	0	0	0
WNT7A	7476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13896295	13896295	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT7A-948	NM_004625	exon3	c.C304A	p.R102R	CCTCCCGGCTCCC	.	62	45	52	0	.	0	0	0	0	0
ZNF385D	79750	broad.mit.edu;bcgsc.ca	37	3	21462870	21462870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF385D-156	NM_024697	exon8	c.G1024T	p.A342S	CTGCAGCTGCTAG	.	57	38	48	1	.	0	0	0	0	0
ZCWPW2	152098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	28454817	28454817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCWPW2-24	NM_001040432	exon2	c.G258T	p.Q86H	TCATCAGTGTGGA	.	130	98	124	2	.	0	0	0	0	0
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30713626	30713626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR2-1698	NM_001024847	exon5	c.G1026T	p.L342F	GGAGTTGGGGAAA	.	113	74	160	1	.	0	0	0	0	0
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38936044	38936044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN11A-99	NM_014139	exon15	c.C2815A	p.Q939K	CAGGTTGTGTGAT	.	100	55	119	1	.	0	0	0	0	0
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38991675	38991675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN11A-99	NM_014139	exon1	c.G179A	p.R60K	AACTTCCTGGAGG	.	111	70	129	2	.	0	0	0	0	0
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39151570	39151570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21A-91	NM_001105513	exon3	c.G208T	p.D70Y	CACCCAGACGTGT	.	67	37	118	0	.	0	0	0	0	0
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39307473	39307473	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.T624A	p.L208L	GTCACCAAGGCAT	.	94	49	141	0	.	0	0	0	0	0
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39307475	39307475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.C622A	p.L208I	CACCAAGGCATTC	.	91	47	140	0	.	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42787495	42787495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC13-91	NM_144719	exon7	c.G745A	p.D249N	TGATGTCTTCCCC	.	100	44	149	0	.	0	0	0	0	0
EXOSC7	23016	bcgsc.ca	37	3	45052775	45052775	+	Missense_Mutation	SNP	G	G	C	rs6794	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOSC7-90	NM_015004	exon8	c.G820C	p.V274L	AGTGTTGTGCACA	.	123	6	175	1	G|0.396;C|0.604	0	0	0	0	0
CSPG5	10675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47618883	47618883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSPG5-91	NM_006574	exon2	c.C633G	p.D211E	GAAGTAGTCGATG	.	55	29	78	1	.	0	0	0	0	0
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48607044	48607044	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL7A1-160	NM_000094	exon101	c.G7595C	p.R2532P	GCACCCCGTGGGC	.	75	44	86	0	.	0	0	0	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755684	49755684	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMIGO3-91	NM_198722	exon1	c.A1215C	p.P405P	GCAGGGTGGGGCG	.	102	21	38	1	.	0	0	0	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52402787	52402787	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH1-67	NM_015512	exon37	c.G5796T	p.R1932R	CATCCGGGCGGGG	.	144	78	184	0	.	0	0	0	0	0
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57458294	57458294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH12-47	NM_178504	exon14	c.C1755A	p.P585P	AAAGATGGGATTA	.	207	118	249	0	.	0	0	0	0	0
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62535700	62535700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADPS-281	NM_003716	exon11	c.G1844T	p.W615L	TGGACCCACAGGA	.	166	90	175	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77607213	77607213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO2-328	NM_002942	exon9	c.C1350A	p.S450R	AATTAGCTGGTTA	.	130	70	173	0	.	0	0	0	0	0
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78795964	78795964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO1-67	NM_002941	exon5	c.G586T	p.G196C	GATGGCCTCGTGG	.	79	44	97	0	.	0	0	0	0	0
POU1F1	5449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	87322579	87322579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU1F1-226	NM_001122757	exon2	c.G210T	p.L70F	GTTTCCCAACGTT	.	79	46	156	0	.	0	0	0	0	0
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93617357	93617357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROS1-153	NM_000313	exon8	c.G784T	p.G262C	TGTAACCTCCAGG	.	175	35	171	0	.	0	0	0	0	0
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97466266	97466266	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA6-1561	NM_001080448	exon17	c.3129-1G>T	.	CTTACAGAATGCC	.	47	15	61	1	.	0	0	0	0	0
OR5AC2	81050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97806110	97806110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5AC2-69	NM_054106	exon1	c.G94T	p.V32L	TTTGTTGTGTTTT	.	169	38	160	2	.	0	0	0	0	0
OR5H2	79310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98002120	98002120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5H2-71	NM_001005482	exon1	c.C389A	p.A130D	ATGTAGCCATATG	.	147	54	122	1	.	0	0	0	0	0
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100948383	100948383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IMPG2-93	NM_016247	exon17	c.G3474C	p.K1158N	GTTGTACTTCACA	.	93	54	74	0	.	0	0	0	0	0
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108812300	108812300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC1-98	NM_014429	exon8	c.G672T	p.M224I	TCCAGCCATCAGT	.	79	12	79	0	.	0	0	0	0	0
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111898522	111898522	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_183061	exon23	c.G2775A	p.G925G	ATCAATCCCTAAA	.	20	11	23	0	.	0	0	0	0	0
BOC	91653	broad.mit.edu;bcgsc.ca	37	3	112992151	112992151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BOC-157	NM_033254	exon8	c.C1197A	p.S399R	TGGGAGCGCCCAT	.	124	76	67	2	.	0	0	0	0	0
SIDT1	54847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113304098	113304098	+	Missense_Mutation	SNP	G	G	T	rs199757460	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIDT1-95	NM_017699	exon9	c.G982T	p.G328W	CTTGTTGGGTTTG	.	101	54	107	0	G|1.000;A|0.000	0	0	0	0	0
IGSF11	152404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	118621406	118621406	+	Silent	SNP	G	G	T	rs148424020	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF11-90	NM_001015887	exon7	c.C1257A	p.V419V	TACCATGACAGGT	.	151	15	164	0	G|1.000;A|0.000	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120053716	120053716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099678	exon3	c.G900T	p.K300N	TCCACACTTTGGG	.	93	12	92	0	.	0	0	0	0	0
HGD	3081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120347254	120347254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGD-68	NM_000187	exon14	c.C1311A	p.N437K	CCTGGAGTTGGGA	.	120	20	118	0	.	0	0	0	0	0
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121340603	121340603	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO40-273	NM_016298	exon3	c.C327T	p.T109T	TGAAACCACCCTT	.	95	50	72	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	25	18	1	0	T|0.412;A|0.588	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122680055	122680055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5B-157	NM_001256347	exon2	c.C218A	p.P73H	GTATCAGGCGGCC	.	297	159	248	1	.	0	0	0	0	0
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124017695	124017695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KALRN-738	NM_003947	exon6	c.G1021C	p.G341R	GAGATCGGAGTCA	.	214	107	178	0	.	0	0	0	0	0
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125869263	125869263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L1-156	NM_001270364	exon8	c.G1000T	p.A334S	CCTCCGCAGTAAC	.	291	73	261	0	.	0	0	0	0	0
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126224620	126224620	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UROC1-91	NM_001165974	exon8	c.C737G	p.T246S	CCAGAGGTGACAA	.	226	50	159	0	.	0	0	0	0	0
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127387303	127387303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PODXL2-91	NM_015720	exon5	c.G1226T	p.R409L	AGCACCGGGGGCC	.	270	143	196	1	.	0	0	0	0	0
IFT122	55764	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129239080	129239080	+	Missense_Mutation	SNP	G	G	T	rs201755623	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IFT122-92	NM_052985	exon31	c.G3851T	p.R1284L	ACTGCCGCAGGTG	.	106	64	65	1	G|0.999;A|0.001	0	0	0	0	0
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129373858	129373858	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMCC1-91	NM_001017395	exon5	c.G1600T	p.E534X	TTTCTTCCATGCT	.	105	21	82	0	.	0	0	0	0	0
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138724701	138724701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001134659	exon1	c.T410A	p.V137D	TGCTCAACGACGA	.	303	153	195	0	.	0	0	0	0	0
PRR23C	389152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138762923	138762923	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRR23C-23	NM_001134657	exon1	c.C540G	p.P180P	AGCGGAGGGGTAG	.	198	115	144	1	.	0	0	0	0	0
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140167391	140167391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon6	c.G818T	p.G273V	AGCCTGGCTCCGG	.	196	37	221	0	.	0	0	0	0	0
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140265408	140265408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon10	c.C1559A	p.A520D	GCCTGGCCAGTCT	.	300	172	240	1	.	0	0	0	0	0
SPSB4	92369	hgsc.bcm.edu	37	3	140785132	140785132	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPSB4-226	NM_080862	exon2	c.G186T	p.S62S	CCGCTCGCTCAAC	.	129	26	4	0	.	0	0	0	0	0
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141904794	141904794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GK5-90	NM_001039547	exon9	c.G793T	p.V265L	TAGGCACACCAAA	.	127	12	102	0	.	0	0	0	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142232433	142232433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATR-1139	NM_001184	exon26	c.G4551C	p.M1517I	CTTCATCATAATG	.	469	88	395	0	.	0	0	0	0	0
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142523389	142523389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC1-92	NM_001251845	exon12	c.A2071G	p.I691V	AAGACTATCTGCT	.	263	44	247	0	.	0	0	0	0	0
CPA3	1359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148586735	148586735	+	Missense_Mutation	SNP	G	G	T	rs138685459	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPA3-154	NM_001870	exon3	c.G178T	p.V60L	CACCACGTAGCTG	.	105	19	69	0	G|1.000;A|0.000	0	0	0	0	0
CP	1356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148923984	148923984	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CP-515	NM_000096	exon6	c.C1179T	p.F393F	TTTAGTGAAGATG	.	92	13	87	1	.	0	0	0	0	0
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151055969	151055969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	P2RY12-501	NM_022788	exon3	c.G665C	p.R222T	CTCGTTCTTACGT	.	121	19	124	0	.	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151166386	151166386	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF10-102	NM_178822	exon4	c.A1383T	p.P461P	TGCTCTTGGTAAA	.	85	49	59	0	.	0	0	0	0	0
RAP2B	5912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152880651	152880651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2B-847	NM_002886	exon1	c.G169T	p.D57Y	ATCCTGGATACGG	.	341	174	282	0	.	0	0	0	0	0
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154146424	154146424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR149-96	NM_001038705	exon1	c.G981T	p.M327I	TTTTACCATCATG	.	341	191	221	1	.	0	0	0	0	0
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154884770	154884770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MME-516	NM_007287	exon18	c.G1740T	p.M580I	CGGCATGGTCATA	.	116	65	144	0	.	0	0	0	0	0
TIPARP	25976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156413771	156413771	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIPARP-523	NM_015508	exon4	c.A1204T	p.R402X	AAAAGGAGACCCC	.	79	22	78	0	.	0	0	0	0	0
RARRES1	5918	hgsc.bcm.edu	37	3	158449965	158449965	+	Silent	SNP	T	T	C	rs6441223	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RARRES1-514	NM_206963	exon1	c.A240G	p.L80L	CACTCGTAGCGCG	.	4	4	0	0	T|0.584;C|0.416	0	0	0	0	0
OTOL1	131149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	161214847	161214847	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080440	exon1	c.C252T	p.L84L	CACTCTCTCTCCC	.	179	17	145	0	.	0	0	0	0	0
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164786984	164786984	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SI-104	NM_001041	exon5	c.256-1G>T	.	AATTCCCTGATAA	.	112	17	112	0	.	0	0	0	0	0
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	165547305	165547305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCHE-94	NM_000055	exon2	c.G1517T	p.G506V	ACTTACCCATATT	.	82	13	93	0	.	0	0	0	0	0
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167184843	167184843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINI2-228	NM_001012303	exon4	c.G508C	p.G170R	CTTTACCATCTGT	.	36	4	28	0	.	0	0	0	0	0
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167218046	167218046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR49-155	NM_178824	exon14	c.C1870T	p.P624S	CTTCAGGCAGCTC	.	50	29	59	0	.	0	0	0	0	0
SAMD7	344658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169644583	169644583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD7-91	NM_182610	exon6	c.G533T	p.G178V	GCTGGGGGCAGAG	.	215	40	143	0	.	0	0	0	0	0
TNIK	23043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170928929	170928929	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNIK-550	NM_001161562	exon4	c.A282T	p.P94P	GCCTGGTGGGTTC	.	60	26	79	0	.	0	0	0	0	0
KCNMB2	10242	hgsc.bcm.edu;bcgsc.ca	37	3	178543454	178543454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB2-91	NM_005832	exon4	c.135delC	p.D45fs	AGAGGACCGAGCT	.	196	93	193	1	.	0	0	0	0	0
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179076752	179076752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MFN1-155	NM_033540	exon4	c.C373T	p.L125F	GCCTATCTTATGA	.	60	33	72	1	.	0	0	0	0	0
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179332777	179332777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB5-91	NM_002492	exon2	c.G143T	p.G48V	ACAGTGGAGACCA	.	46	11	48	0	.	0	0	0	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180366051	180366051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon10	c.G1264A	p.E422K	CAATTTCTGATAA	.	68	13	79	0	.	0	0	0	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180369189	180369189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon9	c.G1167A	p.K389K	CTTTACCTTCACA	.	40	17	32	0	.	0	0	0	0	0
SOX2	6657	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	181430384	181430384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX2-650	NM_003106	exon1	c.G236T	p.W79L	CCGAGTGGAAACT	.	312	38	265	1	.	0	0	0	0	0
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183013226	183013226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2L2-293	NM_015078	exon13	c.C1537A	p.Q513K	TTTCCTGGACATC	.	159	29	146	0	.	0	0	0	0	0
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183679297	183679297	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC5-137	NM_005688	exon17	c.2379+2T>A	.	GATCTTACCTCAA	.	107	53	110	0	.	0	0	0	0	0
VWA5B2	90113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183952539	183952539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_138345	exon6	c.G941T	p.R314L	GGGACCGGCAGGT	.	106	60	114	1	.	0	0	0	0	0
CHRD	8646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184105719	184105719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRD-93	NM_003741	exon20	c.G2452T	p.G818W	CTACAGGGGGGCA	.	231	30	181	1	.	0	0	0	0	0
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185337191	185337191	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SENP2-658	NM_021627	exon13	c.G1347T	p.G449G	GTCTGGGGGTTAC	.	89	54	82	0	.	0	0	0	0	0
FETUB	26998	hgsc.bcm.edu	37	3	186358823	186358823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FETUB-92	NM_014375	exon2	c.G230T	p.G77V	AGGGTGGCCTGGG	.	68	4	57	0	.	0	0	0	0	0
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186389494	186389494	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HRG-91	NM_000412	exon4	c.C474A	p.A158A	ACAAGCCAACAAA	.	263	130	219	1	.	0	0	0	0	0
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	191107354	191107354	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC50-90	NM_178335	exon11	c.C1392T	p.S464S	GAGTTCCACACGG	.	138	52	127	0	.	0	0	0	0	0
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193376763	193376763	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPA1-68	NM_130837	exon24	c.C2419T	p.L807L	GAGGCTCTGCAGG	.	108	20	89	0	.	0	0	0	0	0
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080771	194080771	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC15-71	NM_001135057	exon3	c.G1020T	p.P340P	GGCACCCGGGGAG	.	183	28	158	0	.	0	0	0	0	0
ACAP2	23527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195022705	195022705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAP2-136	NM_012287	exon14	c.G1315T	p.G439X	GAATTCCGGAGCA	.	213	39	180	1	.	0	0	0	0	0
PIGZ	80235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196674222	196674222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIGZ-93	NM_025163	exon3	c.C1546G	p.L516V	GGCAGAGCCATGG	.	114	56	90	1	.	0	0	0	0	0
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197402298	197402298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon19	c.G2735T	p.C912F	CCTTCACAGGTCC	.	65	31	61	0	.	0	0	0	0	0
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197420601	197420601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon11	c.G1771A	p.E591K	CAAATTCATCAAC	.	86	20	85	0	.	0	0	0	0	0
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1373968	1373968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020894	exon11	c.C1702T	p.R568C	TGGTGCCGTGCCC	.	288	122	177	0	.	0	0	0	0	0
CRIPAK	285464	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1388416	1388416	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRIPAK-90	NM_175918	exon1	c.A117G	p.R39R	ATGTCGATGCGGA	.	131	38	117	1	.	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	71	13	6	0	.	0	0	0	0	0
MSX1	4487	hgsc.bcm.edu;broad.mit.edu	37	4	4862086	4862086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.460delC	p.P154fs	TCCCCGCCGCCGG	.	25	15	6	0	.	0	0	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4862087	4862088	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.461_462del	p.154_154del	CCCCGCCGCCGGC	.	25	0	6	0	.	0	0	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4862088	4862088	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.G462A	p.P154P	CCCGCCGCCGGCC	.	24	14	6	0	.	0	0	0	0	0
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5749913	5749913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVC-92	NM_153717	exon8	c.C978G	p.H326Q	CCAGCACTTTCTT	.	98	51	103	0	.	0	0	0	0	0
ZNF518B	85460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10446969	10446969	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF518B-72	NM_053042	exon3	c.A984T	p.P328P	TGTCAATGGCATA	.	211	44	244	1	.	0	0	0	0	0
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13615256	13615256	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_148894	exon5	c.G1204T	p.G402X	TAAGTCCATCCAC	.	98	24	155	0	.	0	0	0	0	0
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15512967	15512967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CC2D2A-25	NM_001080522	exon9	c.G638C	p.R213T	AAGCAAGACATAG	.	112	28	97	0	.	0	0	0	0	0
BST1	683	broad.mit.edu	37	4	15717413	15717413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BST1-90	NM_004334	exon6	c.G695T	p.G232V	TTGGGGGACCCAA	.	62	21	66	2	.	0	0	0	0	0
CLRN2	645104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17524572	17524572	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLRN2-68	NM_001079827	exon2	c.G339T	p.L113L	GGCTCTGGTCAGC	.	99	26	103	1	.	0	0	0	0	0
DCAF16	54876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17805608	17805608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF16-91	NM_017741	exon3	c.G157T	p.A53S	GCCAGGCAAGACT	.	77	8	101	0	.	0	0	0	0	0
MIR218-1	407000	ucsc.edu;bcgsc.ca	37	4	20529995	20529995	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CGTCACGCAGCTT	.	110	20	114	0	.	0	0	0	0	0
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20530599	20530599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon16	c.G1490T	p.S497I	AATTAAGTGGAGA	.	42	5	61	0	.	0	0	0	0	0
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20543086	20543086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon20	c.G1987C	p.A663P	CTCTTGGCCAATC	.	128	58	142	0	.	0	0	0	0	0
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20550717	20550717	+	Missense_Mutation	SNP	C	C	G	rs143383158	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon24	c.C2455G	p.R819G	CCTCCTCGCACCT	.	79	31	56	0	C|1.000;T|0.000	0	0	0	0	0
PACRGL	133015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20711305	20711305	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PACRGL-68	NM_001258345	exon5	c.276-1G>C	.	ATTTTAGATTGGT	.	28	15	46	0	.	0	0	0	0	0
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	23815899	23815899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPARGC1A-230	NM_013261	exon8	c.G1207C	p.E403Q	GGAGCTCCTGTGA	.	45	19	40	0	.	0	0	0	0	0
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26997095	26997095	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STIM2-91	NM_001169118	exon4	c.A492T	p.K164N	TGTCAAAGGAACG	.	57	20	71	0	.	0	0	0	0	0
PCDH7	5099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724205	30724205	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C1161A	p.A387A	CATGGCCCGCGAC	.	378	166	226	1	.	0	0	0	0	0
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725203	30725203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C2159A	p.P720H	GAGATCCTCCCAG	.	167	42	200	0	.	0	0	0	0	0
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726108	30726108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C3064A	p.Q1022K	GCCGTACAAGATC	.	122	41	145	0	.	0	0	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36214095	36214095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARAP2-93	NM_015230	exon5	c.G1056T	p.K352N	TTCATTCTTTATA	.	28	9	51	0	.	0	0	0	0	0
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40337897	40337897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRNA9-96	NM_017581	exon2	c.G118C	p.E40Q	CTTTTTGAAGATT	.	162	41	167	0	.	0	0	0	0	0
DCAF4L1	285429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41984385	41984385	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L1-23	NM_001029955	exon1	c.C576G	p.L192L	GTCCCTCAACACC	.	209	19	270	0	.	0	0	0	0	0
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42895306	42895306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRXCR1-23	NM_001080476	exon1	c.C23A	p.P8Q	TGAAGCCAGAAAG	.	242	43	254	0	.	0	0	0	0	0
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44177094	44177094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCTD8-92	NM_198353	exon2	c.G1135T	p.A379S	CTGTTGCCTGCTG	.	108	32	121	0	.	0	0	0	0	0
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46060307	46060307	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG1-92	NM_173536	exon7	c.C843A	p.C281X	CAGAATGCATGGA	.	177	60	189	0	.	0	0	0	0	0
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52895076	52895076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCB-90	NM_000232	exon4	c.G441T	p.Q147H	CCCTTGCTGAAAA	.	45	15	42	0	.	0	0	0	0	0
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52944930	52944930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPATA18-72	NM_145263	exon8	c.C1050A	p.F350L	GGCATTCAGACAC	.	105	27	101	0	.	0	0	0	0	0
TMEM165	55858	hgsc.bcm.edu	37	4	56262374	56262374	+	Silent	SNP	A	A	G	rs1128141		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM165-514	NM_018475	exon1	c.A18G	p.P6P	GGCTCCAGGGAAC	.	6	6	0	0	T|0.293;G|0.003	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	24	18	0	0	G|0.970;T|0.030	0	0	0	0	0
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56763013	56763013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOC1-950	NM_018261	exon16	c.G2084T	p.R695L	AGCGTCGTGGAGA	.	79	29	101	0	.	0	0	0	0	0
POLR2B	5431	hgsc.bcm.edu;bcgsc.ca	37	4	57889607	57889609	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	ATG	ATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR2B-92	NM_000938	exon19	c.2627_2629del	p.876_877del	CTGAAAATGAAGA	.	146	63	155	0	.	0	0	0	0	0
LPHN3	23284	ucsc.edu;bcgsc.ca	37	4	62910175	62910175	+	Missense_Mutation	SNP	G	G	T	rs143689172	by1000genomes;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPHN3-508	NM_015236	exon22	c.G3518T	p.R1173L	AGAGCCGAATCCG	.	332	130	451	3	G|0.999;A|0.000	0	0	0	0	0
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	65180421	65180421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TECRL-90	NM_001010874	exon5	c.C496A	p.P166T	TACATGGGATCCT	.	302	124	365	1	.	0	0	0	0	0
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	66201818	66201818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA5-1430	NM_004439	exon16	c.A2684G	p.Y895C	AGACGATAGCCTT	.	105	42	133	1	.	0	0	0	0	0
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467370	66467370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA5-1430	NM_004439	exon3	c.G899T	p.G300V	CAGGTGCCATTTT	.	67	30	60	0	.	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68492095	68492095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBA6-90	NM_018227	exon28	c.C2501T	p.S834F	TCATTAGATAAAA	.	29	6	32	0	.	0	0	0	0	0
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69343119	69343119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS11E-70	NM_014058	exon8	c.T740A	p.F247Y	CTTCCTTTGGAGT	.	199	80	193	0	.	0	0	0	0	0
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69795545	69795545	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT2A3-92	NM_024743	exon6	c.G1570C	p.E524Q	TCTTTTCTATCTT	.	57	25	87	0	.	0	0	0	0	0
HTN1	3346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70920167	70920167	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTN1-91	NM_002159	exon4	c.T102C	p.H34H	ATTCCATGTAAGT	.	108	18	142	0	.	0	0	0	0	0
MUC7	4589	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346966	71346966	+	Missense_Mutation	SNP	C	C	A	rs41413151	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC7-93	NM_001145007	exon4	c.C505A	p.P169T	GCTGCCCCACCCA	.	254	126	276	1	C|0.987;A|0.013	0	0	0	0	0
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72622606	72622606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GC-93	NM_001204307	exon9	c.G914A	p.C305Y	TTGTCACAGAGTT	.	34	16	40	0	.	0	0	0	0	0
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77244563	77244563	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC158-96	NM_001042784	exon24	c.3158-1G>T	.	GTGAATCTATTAG	.	40	9	47	0	.	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	16	6	1	0	T|0.691;C|0.309	0	0	0	0	0
CNOT6L	246175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	78641630	78641630	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT6L-67	NM_144571	exon12	c.A1623G	p.P541P	CAGGAGTGGAGGG	.	754	181	816	1	.	0	0	0	0	0
FGF5	2250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	81207738	81207738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF5-1135	NM_004464	exon3	c.C719A	p.P240H	AGCCACCTAGCCC	.	102	20	106	0	.	0	0	0	0	0
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82090866	82090866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon4	c.A799T	p.R267W	TCCTCCTCATTAT	.	52	12	43	0	.	0	0	0	0	0
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	82125944	82125944	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon1	c.G258T	p.V86V	CATATGCACCACA	.	137	55	143	0	.	0	0	0	0	0
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83785613	83785613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEC31A-268	NM_001077206	exon11	c.C1336T	p.Q446X	CCTGCTGAAGTTG	.	121	59	109	2	.	0	0	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85626662	85626662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon54	c.G8220T	p.E2740D	ATCCACCTCCTAA	.	103	40	108	0	.	0	0	0	0	0
SLC10A6	345274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87744863	87744863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A6-22	NM_197965	exon6	c.G1112T	p.G371V	ATGTGGCCAACTG	.	124	27	132	1	.	0	0	0	0	0
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87769948	87769948	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A6-22	NM_197965	exon1	c.G321T	p.P107P	GCCCCCCGGGCAG	.	176	82	145	0	.	0	0	0	0	0
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89607931	89607931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HERC3-660	NM_014606	exon22	c.A2552C	p.E851A	TGGAGGAGACTTT	.	112	34	115	0	.	0	0	0	0	0
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90857026	90857026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.T2195G	p.M732R	AGACAATGACTAT	.	130	35	184	0	.	0	0	0	0	0
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90857213	90857213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.G2382T	p.Q794H	CAATCAGAGATAT	.	50	18	69	0	.	0	0	0	0	0
ATOH1	474	hgsc.bcm.edu;bcgsc.ca	37	4	94750174	94750174	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATOH1-90	NM_005172	exon1	c.97delC	p.P33fs	CCGCCGCCGCCGC	.	427	110	300	1	.	0	0	0	0	0
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95497186	95497186	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDLIM5-117	NM_006457	exon5	c.710+1G>T	.	AAATGGGTAGGTG	.	172	59	179	0	.	0	0	0	0	0
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96075737	96075737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1B-1378	NM_001256793	exon11	c.G1512T	p.W504C	ATGCTGGGCTCAC	.	168	44	140	0	.	0	0	0	0	0
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100235236	100235236	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon6	c.C570T	p.V190V	TGGGGTGACCTGT	.	155	72	186	0	.	0	0	0	0	0
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100237112	100237112	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon5	c.C510A	p.V170V	GAGGCAGACTTTC	.	262	72	276	0	.	0	0	0	0	0
NFKB1	4790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103537720	103537720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFKB1-912	NM_003998	exon24	c.G2879T	p.G960V	ATTATGGGCAGGA	.	86	52	97	0	.	0	0	0	0	0
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103557078	103557078	+	Missense_Mutation	SNP	T	T	C	rs113843904		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MANBA-91	NM_005908	exon15	c.A2101G	p.T701A	AGAACGTGTTTTC	.	135	28	159	0	T|0.500;C|0.500	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104032111	104032111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon47	c.G7598T	p.G2533V	CCGCTGCCACCTC	.	49	24	69	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104066245	104066245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon32	c.G4819T	p.D1607Y	GTTGGTCTCTCTC	.	33	13	37	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104080288	104080288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon22	c.T2480A	p.M827K	AAGTCCATATGAA	.	61	30	95	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104102532	104102532	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon12	c.A1045T	p.R349X	CTTTTCTATACCT	.	193	58	214	0	.	0	0	0	0	0
GSTCD	79807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106640417	106640417	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSTCD-92	NM_001031720	exon3	c.G627T	p.G209G	AGTTGGGCCTCCC	.	94	38	114	2	.	0	0	0	0	0
DKK2	27123	ucsc.edu;bcgsc.ca	37	4	107845222	107845222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKK2-661	NM_014421	exon4	c.T669A	p.H223Q	CAGCCCATGAGAA	.	250	54	323	2	.	0	0	0	0	0
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107956686	107956686	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKK2-661	NM_014421	exon1	c.G63T	p.L21L	CACCATCAGCACC	.	121	47	140	0	.	0	0	0	0	0
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111539439	111539439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITX2-650	NM_000325	exon3	c.C817G	p.P273A	TCGGCGGCGCGTA	.	257	151	217	0	.	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	5	5	0	0	G|0.022;A|0.978	0	0	0	0	0
ANK2	287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114199709	114199709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon17	c.G1876T	p.A626S	GCCACTGCCAAGG	.	187	116	118	1	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114279073	114279073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon38	c.C9299G	p.P3100R	AAAACCCATTTCT	.	110	73	86	0	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114294594	114294594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon45	c.G11848A	p.E3950K	GACACCGAGCAGT	.	427	250	308	0	.	0	0	0	0	0
UGT8	7368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115544819	115544819	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT8-92	NM_003360	exon1	c.A783T	p.V261V	TTATGTAGGAGGA	.	163	91	126	0	.	0	0	0	0	0
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115773935	115773935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDST4-94	NM_022569	exon8	c.G1762T	p.E588X	TTTTCTCTCTGGA	.	112	69	108	0	.	0	0	0	0	0
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119978893	119978893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNPO2-92	NM_133477	exon5	c.A3590T	p.Q1197L	GAAGGCAAGAGTA	.	490	66	328	0	.	0	0	0	0	0
ANXA5	308	bcgsc.ca	37	4	122593694	122593694	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANXA5-91	NM_001154	exon9	c.A619T	p.R207X	CCTTTCTCAAATG	.	59	37	34	1	.	0	0	0	0	0
TRPC3	7222	ucsc.edu;bcgsc.ca	37	4	122853706	122853706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC3-92	NM_001130698	exon2	c.C707T	p.P236L	ATGATGGGGGTGA	.	350	225	222	3	.	0	0	0	0	0
TRPC3	7222	bcgsc.ca	37	4	122853981	122853981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC3-92	NM_001130698	exon2	c.C432A	p.D144E	CATGTAGTCCACG	.	469	307	203	4	.	0	0	0	0	0
KIAA1109	84162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123227129	123227129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1109-80	NM_015312	exon55	c.C9770A	p.S3257X	GTTCTTCAGATAG	.	99	61	92	1	.	0	0	0	0	0
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125591276	125591276	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_020337	exon4	c.A3156T	p.A1052A	CTGGGCTGCAATA	.	498	320	348	0	.	0	0	0	0	0
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	125592669	125592669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_020337	exon4	c.A1763C	p.Q588P	TGTCCCTGTCTAG	.	152	13	105	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126370695	126370695	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A8524T	p.R2842X	CGTTACAGAATTC	.	124	18	92	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126372220	126372220	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A10049T	p.K3350M	TCAATAAGAAGAC	.	141	84	107	0	.	0	0	0	0	0
SCLT1	132320	broad.mit.edu;ucsc.edu	37	4	129964623	129964623	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCLT1-525	NM_144643	exon5	c.162-1G>T	.	AAAAAGCTAAAAA	.	61	11	124	2	.	0	0	0	0	0
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071578	134071578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C283A	p.L95M	CTGCACCTGGAGG	.	65	16	140	0	.	0	0	0	0	0
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071922	134071922	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.G627A	p.G209G	AGGTGGGGGAGGA	.	77	27	70	0	.	0	0	0	0	0
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134073851	134073851	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C2556A	p.P852P	CAACCCCTGCGGG	.	160	60	256	0	.	0	0	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	138451929	138451929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH18-185	NM_019035	exon1	c.G1314T	p.E438D	CCTGTCCTCAGCG	.	29	5	65	0	.	0	0	0	0	0
ZNF330	27309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142155000	142155000	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF330-90	NM_014487	exon10	c.G820T	p.E274X	GAGGATGAGTATG	.	176	42	243	1	.	0	0	0	0	0
GAB1	2549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144359748	144359748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB1-1146	NM_207123	exon4	c.G1190C	p.R397P	AATTGCGAAAAGG	.	44	11	71	0	.	0	0	0	0	0
MMAA	166785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146563573	146563573	+	Missense_Mutation	SNP	G	G	T	rs186933110	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMAA-91	NM_172250	exon3	c.G498T	p.M166I	AAAAATGCTTACT	.	71	13	102	0	G|0.999;A|0.000	0	0	0	0	0
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148968042	148968042	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP10-229	NM_024605	exon20	c.1868-1G>T	.	CTCCTAGGTGACA	.	25	9	40	0	.	0	0	0	0	0
SFRP2	6423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154709637	154709637	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFRP2-659	NM_003013	exon1	c.C351A	p.L117L	CACGCAGAGCGAG	.	200	48	256	0	.	0	0	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155156608	155156608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon25	c.G7831A	p.D2611N	TGGCATCCACAGG	.	64	20	129	0	.	0	0	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155241704	155241704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon14	c.A3482T	p.H1161L	GGGTTGTGGTCAT	.	190	60	279	0	.	0	0	0	0	0
DCHS2	54798	ucsc.edu;bcgsc.ca	37	4	155411953	155411953	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_001142552	exon1	c.C555A	p.A185A	GCGGAAGGCGGTC	.	414	114	247	2	.	0	0	0	0	0
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158224710	158224710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA2-515	NM_000826	exon3	c.C236A	p.S79Y	TCTGCTCCCAGTT	.	49	8	68	0	.	0	0	0	0	0
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092012	159092012	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM198B-90	NM_016613	exon2	c.G516C	p.L172L	CTTAACCAGGTTT	.	91	24	134	0	.	0	0	0	0	0
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159162724	159162724	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM144-90	NM_018342	exon11	c.T866A	p.L289Q	ACTCTCTGAGTGC	.	35	10	55	0	.	0	0	0	0	0
RXFP1	59350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159573178	159573178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP1-91	NM_001253727	exon18	c.C2326A	p.Q776K	ATTTCTCAATCAA	.	46	9	67	0	.	0	0	0	0	0
NPY1R	4886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NPY1R-523	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT	.	124	26	199	0	.	0	0	0	0	0
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164393463	164393463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TKTL2-95	NM_032136	exon1	c.G1424T	p.R475L	CTGGTTCGAATGA	.	86	25	130	0	.	0	0	0	0	0
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166960572	166960572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon10	c.T1240A	p.W414R	GGGTACTGGAGAA	.	63	13	100	0	.	0	0	0	0	0
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	167020586	167020586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon20	c.G2814T	p.V938V	TGAAGTGGAGGAA	.	172	55	290	0	.	0	0	0	0	0
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169383010	169383010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX60L-69	NM_001012967	exon5	c.G446T	p.G149V	CTCAGGCCTTCCT	.	87	23	86	0	.	0	0	0	0	0
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170506532	170506532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEK1-361	NM_001199399	exon10	c.G775T	p.A259S	GTTTGGCTATAAA	.	90	17	126	0	.	0	0	0	0	0
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173734869	173734869	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNTL6-137	NM_001034845	exon7	c.T918C	p.P306P	CGACCCTTTTGAG	.	73	23	84	0	.	0	0	0	0	0
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177098263	177098263	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR17-95	NM_170710	exon29	c.T3621A	p.S1207S	TCTTTCTGAGGAA	.	49	14	58	0	.	0	0	0	0	0
TENM3	55714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183659684	183659684	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080477	exon17	c.G3366T	p.L1122L	CGTGCTGGATGTA	.	158	35	159	1	.	0	0	0	0	0
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455197	187455197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.C699A	p.D233E	CCTGAAGTCCTGT	.	219	62	230	0	.	0	0	0	0	0
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455239	187455239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.G657T	p.Q219H	CACCCTCTGTCTG	.	236	73	253	0	.	0	0	0	0	0
FAT1	2195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187541066	187541066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G6674T	p.S2225I	AACTGGCTGAAAG	.	128	35	173	2	.	0	0	0	0	0
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	189068073	189068073	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIML1-156	NM_178556	exon6	c.C954A	p.P318P	GCTACCCGACAAC	.	179	57	197	0	.	0	0	0	0	0
IRX4	50805	ucsc.edu;bcgsc.ca	37	5	1879752	1879752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX4-226	NM_016358	exon4	c.A602G	p.K201R	TCCTTCTTGAGGC	.	285	94	156	3	.	0	0	0	0	0
KIAA0947	23379	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5457693	5457693	+	Missense_Mutation	SNP	G	G	T	rs76783275	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon12	c.G940T	p.G314C	CGTGACGGTGGTA	.	185	61	193	0	G|0.986;A|0.014	0	0	0	0	0
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5460966	5460966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.G1519T	p.G507C	ACTCGAGGTCTAT	.	216	78	211	0	.	0	0	0	0	0
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5462358	5462358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.A2911T	p.I971F	CAAGACATTGTGA	.	86	32	81	0	.	0	0	0	0	0
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5466585	5466585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon14	c.C6031G	p.R2011G	AGAGCTCGTTTGT	.	105	13	125	0	.	0	0	0	0	0
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9154783	9154783	+	Missense_Mutation	SNP	C	C	A	rs138343991	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5A-91	NM_003966	exon12	c.G1298T	p.R433L	GGTACCCGCACTT	.	377	106	272	0	C|0.999;T|0.000	0	0	0	0	0
SEMA5A	9037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	9202086	9202086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5A-91	NM_003966	exon9	c.G913T	p.G305C	AGATGCCATAGAT	.	269	87	259	1	.	0	0	0	0	0
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11364815	11364815	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNND2-293	NM_001332	exon8	c.G1365C	p.T455T	TGTGCTCGTGCGG	.	61	30	73	0	.	0	0	0	0	0
CTNND2	1501	broad.mit.edu;bcgsc.ca	37	5	11397217	11397217	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNND2-293	NM_001332	exon6	c.C538T	p.L180L	CCCCCAGGGCCAG	.	106	35	91	2	.	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13753344	13753344	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon63	c.C10870T	p.Q3624X	TTACCTGGAGTTC	.	67	19	59	0	.	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13841987	13841987	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon33	c.C5298G	p.S1766S	TTGAGAGGAAATT	.	62	24	67	0	.	0	0	0	0	0
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928111	15928111	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.C240A	p.I80I	CTCCATCACCGGG	.	115	40	87	0	.	0	0	0	0	0
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928344	15928344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.G473T	p.R158L	CTATCCGCCTGAC	.	148	50	75	0	.	0	0	0	0	0
FBXL7	23194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	15928373	15928373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.C502T	p.R168C	GTGGACCGCGCCC	.	195	70	120	1	.	0	0	0	0	0
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19473645	19473645	+	Missense_Mutation	SNP	C	C	A	rs140353037	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH18-159	NM_004934	exon13	c.G2063T	p.R688L	TCCCTCCGGTACT	.	157	59	176	0	C|1.000;T|0.000	0	0	0	0	0
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	21755941	21755941	+	Silent	SNP	C	C	G	rs201811162	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon14	c.G1644C	p.A548A	AATCCCCGCTGTG	.	140	42	170	1	C|0.999;T|0.001	0	0	0	0	0
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21783535	21783535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon11	c.C1325A	p.A442D	TTAGTGGCGATGG	.	95	32	88	0	.	0	0	0	0	0
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21854885	21854885	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon7	c.C541T	p.Q181X	TGACCTGGAGTAC	.	172	58	173	0	.	0	0	0	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23524575	23524575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon10	c.C1083A	p.Y361X	TGAATACGGCCAG	.	255	92	225	0	.	0	0	0	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23526532	23526532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C1335A	p.H445Q	TCCACACAGCCGT	.	113	35	101	0	.	0	0	0	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	23527437	23527437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C2240A	p.P747H	AGAAGCCCTATGT	.	402	128	396	0	.	0	0	0	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33576158	33576158	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon20	c.3972+1G>T	.	GTCTTACCTCGCT	.	95	36	88	0	.	0	0	0	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33576501	33576501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon19	c.G3630A	p.W1210X	GGGTGGCCACCAG	.	210	81	164	0	.	0	0	0	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33658359	33658359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon7	c.C1120A	p.R374S	AACTGCGGTGAGG	.	224	80	194	0	.	0	0	0	0	0
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33751563	33751563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon3	c.G580T	p.V194F	TGTAAACGATGTG	.	223	80	235	1	.	0	0	0	0	0
RXFP3	51289	hgsc.bcm.edu;mdanderson.org	37	5	33938186	33938186	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP3-91	NM_016568	exon1	c.C1341T	p.Y447Y	GCTCTACTACCCA	.	78	28	8	0	.	0	0	0	0	0
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35968210	35968210	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT3A1-92	NM_152404	exon3	c.C222G	p.Y74X	AACTTGGTATGAT	.	67	25	57	0	.	0	0	0	0	0
NIPBL	25836	broad.mit.edu	37	5	37000491	37000491	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NIPBL-293	NM_015384	exon12	c.T3321C	p.H1107H	ACGACATAAAAAA	.	81	10	94	1	.	0	0	0	0	0
C5orf42	65250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37107729	37107729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C5orf42-94	NM_023073	exon52	c.C9569G	p.S3190C	TGGACAGACAGGC	.	348	55	262	1	.	0	0	0	0	0
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38418309	38418309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGFLAM-187	NM_001205301	exon12	c.G1636C	p.D546H	AGAATTGACATGA	.	227	32	173	1	.	0	0	0	0	0
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38881777	38881777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSMR-496	NM_001168355	exon4	c.A329T	p.H110L	CCACACACTTTGT	.	111	46	113	0	.	0	0	0	0	0
C9	735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39308382	39308382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C9-90	NM_001737	exon8	c.G1190T	p.G397V	TCAGCTCCAACAG	.	223	77	203	0	.	0	0	0	0	0
PTGER4	5734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40692043	40692043	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGER4-658	NM_000958	exon3	c.A1030T	p.I344F	GAGAAGATCAAAT	.	167	61	151	0	.	0	0	0	0	0
CARD6	84674	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	40841514	40841514	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD6-230	NM_032587	exon1	c.C30G	p.I10M	AGAGATCATAGAA	.	53	21	56	1	.	0	0	0	0	0
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353216	45353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon5	c.G1363T	p.D455Y	GAGGATCATTGAG	.	62	23	59	0	.	0	0	0	0	0
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52368469	52368469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA2-226	NM_002203	exon19	c.G2373T	p.E791D	TGGTGAGGACGGA	.	50	10	63	0	.	0	0	0	0	0
CDC20B	166979	bcgsc.ca	37	5	54410099	54410099	+	Missense_Mutation	SNP	G	G	A	rs444527	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC20B-90	NM_001170402	exon12	c.C1507T	p.R503W	ACACCCGGGTCTG	.	257	8	255	3	G|0.861;A|0.139	0	0	0	0	0
GPX8	493869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54457048	54457048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPX8-68	NM_001008397	exon2	c.G431T	p.G144V	TTCTAGGATCTGA	.	36	9	44	0	.	0	0	0	0	0
ACTBL2	345651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56778494	56778494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTBL2-25	NM_001017992	exon1	c.G41A	p.G14E	CCTGACCCATTAT	.	160	72	179	0	.	0	0	0	0	0
PDE4D	5144	ucsc.edu;bcgsc.ca	37	5	58270494	58270494	+	Silent	SNP	C	C	A	rs7736186	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4D-226	NM_001104631	exon15	c.G2427T	p.T809T	CTGTTACGTGTCA	.	62	9	86	1	C|0.986;T|0.014	0	0	0	0	0
LRRC70	100130733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61876613	61876613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_181506	exon2	c.G1348A	p.E450K	GAGACTGAGAACA	.	92	38	105	0	.	0	0	0	0	0
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	5	64483914	64483914	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon22	c.2839delC	p.R947fs	CAGGCCGGTGTGT	.	98	23	137	0	.	0	0	0	0	0
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64747376	64747376	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon7	c.C999G	p.L333L	GTGGGAGAGAATG	.	248	26	196	0	.	0	0	0	0	0
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64755998	64755998	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon4	c.G630T	p.S210S	CTCACCCGAAACC	.	81	21	76	0	.	0	0	0	0	0
F2RL1	2150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76129178	76129178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F2RL1-226	NM_005242	exon2	c.G746T	p.G249V	CCATTGGGGTCTT	.	159	37	166	0	.	0	0	0	0	0
S100Z	170591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76173537	76173537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	S100Z-91	NM_130772	exon4	c.G180T	p.Q60H	AGTGCAGGACCTG	.	153	28	179	0	.	0	0	0	0	0
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78944447	78944447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPD4-69	NM_173797	exon10	c.G829T	p.E277X	TGTGTGGAGTTTG	.	99	18	137	0	.	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79025201	79025201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMYA5-77	NM_153610	exon2	c.A613G	p.T205A	CCGATTACTGGGG	.	160	23	195	0	.	0	0	0	0	0
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031613	79031613	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMYA5-77	NM_153610	exon2	c.A7025T	p.D2342V	TTACTGATAGTAA	.	123	31	117	1	.	0	0	0	0	0
THBS4	7060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79366521	79366521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THBS4-90	NM_003248	exon12	c.T1508G	p.I503S	ATGGCATTGGCGA	.	213	45	199	1	.	0	0	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82785935	82785935	+	Missense_Mutation	SNP	C	C	A	rs202176395	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCAN-238	NM_004385	exon3	c.C89A	p.P30Q	AAAGCCCACCGGT	.	45	12	47	0	C|0.999;T|0.001	0	0	0	0	0
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82808022	82808022	+	Silent	SNP	C	C	A	rs142777690	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCAN-238	NM_004385	exon6	c.C849A	p.L283L	GGAACTCCAGGCG	.	102	52	161	1	C|0.999;T|0.001	0	0	0	0	0
EDIL3	10085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	83356153	83356153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EDIL3-131	NM_005711	exon9	c.C1103T	p.T368I	CCAGAGGTCCAGG	.	140	21	128	1	.	0	0	0	0	0
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	88047710	88047710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEF2C-704	NM_001193347	exon7	c.G607C	p.G203R	TTACACCAGGAGA	.	192	44	211	0	.	0	0	0	0	0
POU5F2	134187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93077152	93077152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153216	exon1	c.G118T	p.A40S	CAGGGGCCGCCTG	.	144	68	102	1	.	0	0	0	0	0
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93077153	93077153	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153216	exon1	c.G117T	p.A39A	AGGGGCCGCCTGG	.	145	68	102	0	.	0	0	0	0	0
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93805738	93805738	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0825-91	NM_001145678	exon10	c.C1800T	p.V600V	AACTCTGACGCAG	.	108	18	108	0	.	0	0	0	0	0
ANKRD32	84250	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94027837	94027837	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD32-92	NM_032290	exon20	c.C2571A	p.V857V	GTGTGTCCAGGAA	.	145	37	146	1	.	0	0	0	0	0
MCTP1	79772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94206155	94206155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCTP1-92	NM_024717	exon16	c.G2283T	p.K761N	AATGTACTTCTGT	.	80	37	120	2	.	0	0	0	0	0
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94727146	94727146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon1	c.C53T	p.S18L	AAAAATCACAGAG	.	123	26	129	0	.	0	0	0	0	0
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94772570	94772570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon7	c.C853T	p.Q285X	ATGGTCCAGGGGG	.	103	50	94	0	.	0	0	0	0	0
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94852291	94852291	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC37-94	NM_014639	exon25	c.2516-1G>A	.	CAATACCTGAAAA	.	108	51	126	0	.	0	0	0	0	0
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94901701	94901701	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARSK-91	NM_198150	exon2	c.127-1G>T	.	TTTCCAGGATGGA	.	38	8	53	0	.	0	0	0	0	0
SPATA9	83890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95018555	95018555	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPATA9-90	NM_031952	exon1	c.C4G	p.P2A	TGATTGGCATGGT	.	138	55	151	1	.	0	0	0	0	0
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101794169	101794169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO6A1-96	NM_173488	exon6	c.C1048G	p.R350G	GTTTACGTTTCCT	.	52	20	38	0	.	0	0	0	0	0
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102508858	102508858	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPIP5K2-92	NM_001276277	exon20	c.2287-1G>T	.	TGCTCAGGAATAT	.	55	26	80	0	.	0	0	0	0	0
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112175595	112175595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APC-12026	NM_001127510	exon17	c.G4304C	p.R1435T	CAAGCAGAAGTAA	.	114	29	134	0	.	0	0	0	0	0
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112899724	112899724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDC2-92	NM_022828	exon20	c.G2611T	p.V871L	CCTTTTGTACTAC	.	145	56	136	0	.	0	0	0	0	0
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115318994	115318994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_173800	exon2	c.G706A	p.A236T	CTGTTAGCGTCCC	.	174	88	258	0	.	0	0	0	0	0
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	5	115813810	115813821	+	In_Frame_Del	DEL	TGCCCATGATCC	TGCCCATGATCC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA6A-92	NM_020796	exon14	c.1457_1468del	p.486_490del	GCTGCATGCCCAT	.	144	11	203	0	.	0	0	0	0	0
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118809620	118809620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B4-92	NM_001199291	exon4	c.G205T	p.D69Y	GGAGGGGACTTCA	.	128	20	165	0	.	0	0	0	0	0
MEGF10	84466	broad.mit.edu;ucsc.edu	37	5	126755743	126755743	+	Missense_Mutation	SNP	C	C	A	rs200050342	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEGF10-94	NM_032446	exon13	c.C1434A	p.H478Q	CTGGCACGGGGTG	.	95	16	98	2	C|1.000;T|0.000	0	0	0	0	0
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126769171	126769171	+	Missense_Mutation	SNP	C	C	G	rs202135671	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEGF10-94	NM_032446	exon15	c.C1810G	p.P604A	TGTGCACCAGGCT	.	166	40	164	0	C|0.999;A|0.000	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127595479	127595479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon65	c.G8407T	p.V2803F	TGTTGACGGGGCT	.	127	22	145	0	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127640733	127640733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon45	c.G5716T	p.G1906C	ACAAGCCATGACT	.	199	38	209	0	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127782257	127782257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon7	c.G869T	p.G290V	CAGTTTCCTCCTT	.	77	11	83	0	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127800433	127800433	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon6	c.C810A	p.R270R	TCCAGTGCGGATG	.	45	16	61	0	.	0	0	0	0	0
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128302151	128302151	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC27A6-90	NM_001017372	exon1	c.G321T	p.T107T	GGACACGGTGGCT	.	86	37	105	0	.	0	0	0	0	0
LYRM7	90624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130522733	130522733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYRM7-68	NM_181705	exon4	c.G175T	p.G59C	AAAATAGGTTCTG	.	126	29	143	1	.	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131940656	131940656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAD50-229	NM_005732	exon16	c.T2683C	p.S895P	GAATTATCCACTG	.	170	33	196	0	.	0	0	0	0	0
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132160321	132160321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM1-91	NM_133456	exon3	c.G1227T	p.Q409H	GGGCCCCTGGGAG	.	103	50	103	0	.	0	0	0	0	0
GDF9	2661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132199862	132199862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDF9-227	NM_005260	exon1	c.C364T	p.R122W	TGTGCCGGGTACA	.	135	23	156	1	.	0	0	0	0	0
TXNDC15	79770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134235224	134235224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXNDC15-154	NM_024715	exon5	c.T932A	p.I311K	ACCAAATAGGCCC	.	89	18	63	0	.	0	0	0	0	0
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692848	135692848	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001167576	exon2	c.C228G	p.Y76X	CCCCATGTAGTCC	.	167	28	158	0	.	0	0	0	0	0
TRPC7	57113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692905	135692905	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001167576	exon2	c.G171T	p.P57P	GACCACCGGGATG	.	150	33	158	1	.	0	0	0	0	0
EGR1	1958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR1-227	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG	.	109	17	106	0	.	0	0	0	0	0
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140167127	140167127	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA1-23	NM_031411	exon1	c.C1252T	p.L418L	GAGAGCCTGTCGG	.	245	60	132	0	.	0	0	0	0	0
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140176290	140176290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA2-94	NM_031495	exon1	c.G1741C	p.V581L	GAGCTGGTGCCGT	.	412	98	90	0	.	0	0	0	0	0
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140181421	140181421	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA3-98	NM_031497	exon1	c.A639T	p.T213T	AATAACAGCAATT	.	51	24	71	0	.	0	0	0	0	0
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140187138	140187138	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA4-96	NM_031500	exon1	c.G366A	p.E122E	CGTGGAGGTGAGG	.	234	59	263	0	.	0	0	0	0	0
PCDHA6	56142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140208235	140208235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA6-92	NM_031849	exon1	c.G559A	p.D187N	AACAGTGATGACA	.	118	27	111	1	.	0	0	0	0	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140223235	140223235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA8-92	NM_031856	exon1	c.C2329A	p.P777T	TGCCTTCCTCCTG	.	490	102	475	0	.	0	0	0	0	0
PCDHA10	56139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237814	140237814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA10-99	NM_031859	exon1	c.G2181T	p.E727D	CACCGAGGGCGCA	.	309	164	73	1	.	0	0	0	0	0
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249406	140249406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA11-67	NM_018902	exon1	c.C718A	p.P240T	AATGATCCAGAGT	.	153	66	156	0	.	0	0	0	0	0
PCDHB1	29930	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433080	140433080	+	Missense_Mutation	SNP	G	G	C	rs36090285	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB1-90	NM_013340	exon1	c.G2025C	p.Q675H	GTTCCAGGATCCA	.	150	73	191	0	G|0.995;A|0.005	0	0	0	0	0
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140502574	140502574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB4-93	NM_018938	exon1	c.G994A	p.V332I	GGCACTGTAGTCA	.	157	63	175	0	.	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562215	140562215	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C81T	p.G27G	GGCGGGCGCCGAG	.	130	46	140	0	.	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140562775	140562775	+	Missense_Mutation	SNP	C	C	G	rs139379718	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C641G	p.A214G	TGACAGCGCTGGA	.	65	13	88	0	C|0.997;T|0.003	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140562794	140562794	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.A660T	p.P220P	CTCTCCACCGCGA	.	73	12	94	0	.	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140563800	140563800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.G1666T	p.D556Y	GCCAACGACAACT	.	222	90	22	0	.	0	0	0	0	0
PCDHB10	56126	broad.mit.edu;mdanderson.org	37	5	140573502	140573502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.C1377A	p.F459L	CCTGTTCGTCCGC	.	134	34	86	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	140573565	140573565	+	Silent	SNP	G	G	T	rs61741789	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G1440T	p.S480S	AGACTCGGGCACC	.	241	63	141	0	G|0.680;A|0.320	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140574448	140574448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G2323T	p.D775Y	ATTTCGGATATTC	.	141	55	172	0	.	0	0	0	0	0
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595009	140595009	+	Silent	SNP	C	C	G	rs201145725	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB13-93	NM_018933	exon1	c.C1314G	p.T438T	TATGACCGTGCTG	.	227	46	235	0	C|0.999;T|0.000	0	0	0	0	0
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140595284	140595284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB13-93	NM_018933	exon1	c.G1589T	p.R530L	AGTTCCGCGTGGG	.	443	198	184	1	.	0	0	0	0	0
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140604121	140604121	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB14-91	NM_018934	exon1	c.C1044A	p.T348T	AGTGACCATATCG	.	76	11	81	0	.	0	0	0	0	0
PCDHB15	56121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140625197	140625197	+	Silent	SNP	C	C	A	rs149965698	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB15-156	NM_018935	exon1	c.C51A	p.L17L	GATTCTCCTTCTT	.	64	30	66	1	C|1.000;T|0.000	0	0	0	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140710828	140710828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA1-137	NM_018912	exon1	c.G577C	p.E193Q	CATCCAGAGATGG	.	89	20	99	0	.	0	0	0	0	0
PCDHGA2	56113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140720729	140720729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA2-71	NM_018915	exon1	c.A2191T	p.S731C	GGAGGCAGCTTGA	.	209	93	191	1	.	0	0	0	0	0
PCDHGA2	56113	broad.mit.edu;bcgsc.ca	37	5	140720802	140720802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA2-71	NM_018915	exon1	c.A2264T	p.H755L	ATTCCCACGAGGT	.	199	81	186	2	.	0	0	0	0	0
PCDHGA3	56112	broad.mit.edu;mdanderson.org	37	5	140725478	140725478	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA3-68	NM_032011	exon1	c.G1878T	p.V626V	CGAGGTGCGCACG	.	435	69	74	0	.	0	0	0	0	0
PCDHGB1	56104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140730366	140730366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.A539T	p.K180M	CAACGAAGGAAAG	.	122	36	170	1	.	0	0	0	0	0
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140731133	140731133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.C1306A	p.L436M	ATCACCCTGCACA	.	161	76	170	0	.	0	0	0	0	0
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140731260	140731260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.G1433T	p.G478V	ATTTGGGACCCAA	.	120	71	127	0	.	0	0	0	0	0
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140744142	140744142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.G245T	p.G82V	GAAGCGGCAGCTT	.	113	30	119	0	.	0	0	0	0	0
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140745589	140745589	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.C1692T	p.Y564Y	CCTGTACCCCGCC	.	235	96	247	0	.	0	0	0	0	0
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140753654	140753654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA6-67	NM_018919	exon1	c.G4T	p.A2S	GTAATGGCGCCTC	.	215	46	161	0	.	0	0	0	0	0
PCDHGA7	56108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140762550	140762550	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032087	exon1	c.A84G	p.A28A	CTGGGCAGGACGT	.	119	26	97	0	.	0	0	0	0	0
PCDHGA8	9708	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773971	140773971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014004	exon1	c.C1591A	p.L531M	CAGCTACTGGTAA	.	216	86	220	1	.	0	0	0	0	0
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140782720	140782720	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032089	exon1	c.C201T	p.V67V	CATCGTCTCTAGA	.	91	22	94	0	.	0	0	0	0	0
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140783342	140783342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032089	exon1	c.G823C	p.G275R	ATCAACGGAAAAG	.	92	19	112	0	.	0	0	0	0	0
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140798387	140798387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB7-29	NM_018927	exon1	c.G961T	p.A321S	ATAGAAGCAAAAG	.	128	20	162	0	.	0	0	0	0	0
PCDHGA12	26025	bcgsc.ca	37	5	140812559	140812559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA12-27	NM_032094	exon1	c.G2233T	p.G745W	GTGGACGGGGTGC	.	128	57	108	3	.	0	0	0	0	0
YIPF5	81555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143541849	143541849	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YIPF5-92	NM_001024947	exon5	c.A544T	p.S182C	GGACACTTGCCAC	.	410	107	414	0	.	0	0	0	0	0
KCTD16	57528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	143853384	143853384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCTD16-137	NM_020768	exon4	c.C994G	p.P332A	TGTGGTCCCGTGA	.	413	68	418	1	.	0	0	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145509683	145509683	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARS-90	NM_020117	exon25	c.G2526A	p.G842G	GTGCATCCCTTCC	.	77	37	104	0	.	0	0	0	0	0
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148406710	148406710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.C2585A	p.A862D	TTCAAGGCCCGAA	.	138	53	182	0	.	0	0	0	0	0
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148407036	148407036	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.G2259T	p.R753R	GGTGCTCCGGTCT	.	217	43	237	0	.	0	0	0	0	0
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148745675	148745675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCYOX1L-91	NM_024028	exon4	c.G641T	p.R214L	TCCTGCGGGCCAG	.	71	34	72	0	.	0	0	0	0	0
ARHGEF37	389337	bcgsc.ca	37	5	149011699	149011699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGEF37-90	NM_001001669	exon13	c.G1973T	p.G658V	CTTCTGGCTTCTT	.	267	77	217	4	.	0	0	0	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149505087	149505087	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFRB-1499	NM_002609	exon12	c.C1728G	p.G576G	CTCATGGCCGTCA	.	339	92	245	0	.	0	0	0	0	0
CCDC69	26112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150565009	150565009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC69-92	NM_015621	exon7	c.A589T	p.R197W	GCCGCCTGTCCAG	.	139	60	113	0	.	0	0	0	0	0
SLC36A2	153201	bcgsc.ca	37	5	150696572	150696572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC36A2-91	NM_181776	exon10	c.C1258G	p.L420V	TGATGAGGGCCAG	.	175	52	116	2	.	0	0	0	0	0
SLC36A2	153201	ucsc.edu;bcgsc.ca	37	5	150696573	150696573	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC36A2-91	NM_181776	exon10	c.C1257A	p.A419A	GATGAGGGCCAGG	.	173	48	116	2	.	0	0	0	0	0
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150925322	150925322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT2-96	NM_001447	exon9	c.C5366A	p.A1789D	TCAGAGGCATGAA	.	86	43	75	0	.	0	0	0	0	0
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154396953	154396953	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF4B-1	NM_001099293	exon1	c.G3534T	p.V1178V	GCAGGTGCTGTCA	.	224	61	162	0	.	0	0	0	0	0
TIMD4	91937	bcgsc.ca	37	5	156378664	156378664	+	Missense_Mutation	SNP	C	C	T	rs145234048	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIMD4-92	NM_138379	exon3	c.G538A	p.G180R	GTGTTCCGGTTGT	.	956	415	721	6	C|0.999;T|0.001	0	0	0	0	0
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156997966	156997966	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM19-294	NM_033274	exon2	c.C117T	p.P39P	CAGCTTGGGGCTG	.	122	52	69	0	.	0	0	0	0	0
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158139314	158139314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF1-92	NM_024007	exon14	c.C1397A	p.S466X	TGTGGTGATACGC	.	236	103	189	0	.	0	0	0	0	0
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161322775	161322775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRA1-93	NM_001127644	exon9	c.C960G	p.C320W	CGTGTGCTATGCC	.	272	126	237	2	.	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161576148	161576148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG2-95	NM_198903	exon9	c.C1077G	p.S359R	CCTCAGCACCATT	.	172	39	116	0	.	0	0	0	0	0
CCNG1	900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	162869514	162869514	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNG1-725	NM_199246	exon7	c.G831A	p.L277L	GCAATTGAAGCAT	.	205	76	211	1	.	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167645293	167645293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001122679	exon23	c.G4370T	p.S1457I	CACTCAGCAAACT	.	306	101	252	0	.	0	0	0	0	0
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169141144	169141144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK2-97	NM_004946	exon18	c.G1772T	p.G591V	TTGGGGGGCTTTC	.	187	102	111	1	.	0	0	0	0	0
FAM196B	100131897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169310385	169310385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001129891	exon2	c.G518C	p.R173T	GGGACCCTTGGGA	.	144	57	118	0	.	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169461501	169461501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK2-97	NM_004946	exon35	c.G3566T	p.R1189L	ATTACCGGGGTGT	.	169	87	113	0	.	0	0	0	0	0
FOXI1	2299	broad.mit.edu;bcgsc.ca	37	5	169533089	169533089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXI1-229	NM_012188	exon1	c.G128T	p.S43I	TGCCCAGCCCTCA	.	345	102	166	1	.	0	0	0	0	0
KCNMB1	3779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169810783	169810783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB1-92	NM_004137	exon3	c.T206G	p.L69R	ACCTTCTTGCCCT	.	182	56	143	0	.	0	0	0	0	0
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	170736778	170736778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX3-658	NM_021025	exon1	c.G409A	p.D137N	GTGAAAGACCGCT	.	121	44	46	0	.	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	17	7	2	0	G|0.585;C|0.415	0	0	0	0	0
EIF4E1B	253314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070253	176070253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099408	exon4	c.C186A	p.H62Q	GCTGCACCCCTTG	.	210	92	166	1	.	0	0	0	0	0
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178770799	178770799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS2-228	NM_021599	exon2	c.C503A	p.S168Y	ACAGAGGAGGCTT	.	138	51	47	0	.	0	0	0	0	0
C5orf60	285679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179069972	179069972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001142306	exon4	c.C581A	p.S194Y	TTGGAGGAGCTCA	.	506	209	364	0	.	0	0	0	0	0
MAML1	9794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179195985	179195985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAML1-848	NM_014757	exon3	c.G1866T	p.K622N	AATGAAGCAGCAT	.	187	67	157	1	.	0	0	0	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486429	180486429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTNL9-91	NM_152547	exon11	c.G1175T	p.R392L	TGGGCCGCCGCAG	.	20	13	0	0	.	0	0	0	0	0
IRF4	3662	ucsc.edu;bcgsc.ca	37	6	401669	401669	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF4-659	NM_002460	exon7	c.C991T	p.Q331X	CTGTGCCAGAGCA	.	247	92	219	3	.	0	0	0	0	0
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	3140673	3140673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BPHL-90	NM_004332	exon6	c.C718A	p.H240N	ATTGTGCACGGTG	.	226	102	217	1	.	0	0	0	0	0
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4954182	4954182	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDYL-90	NM_004824	exon7	c.G1527T	p.L509L	GGAGCTGGAGCAG	.	150	45	146	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	26	26	0	0	A|0.006;G|0.994	0	0	0	0	0
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7579564	7579564	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSP-518	NM_004415	exon23	c.C3141A	p.A1047A	AGATGCCAACTCG	.	104	34	112	1	.	0	0	0	0	0
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu	37	6	16328522	16328522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATXN1-93	NM_001128164	exon7	c.G20T	p.R7L	TTGCTCCGCTCTT	.	24	5	11	0	.	0	0	0	0	0
NHLRC1	378884	hgsc.bcm.edu	37	6	18122526	18122526	+	Silent	SNP	A	A	G	rs115931931	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NHLRC1-90	NM_198586	exon1	c.T312C	p.H104H	GGCGCGATGGGCG	.	10	6	0	0	A|0.885;G|0.115	0	0	0	0	0
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	21000542	21000542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDKAL1-92	NM_017774	exon11	c.G994T	p.E332X	CTCATGGAAATGA	.	61	17	55	0	.	0	0	0	0	0
GPLD1	2822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24473883	24473883	+	Missense_Mutation	SNP	C	C	A	rs139020496	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPLD1-228	NM_001503	exon6	c.G454T	p.G152C	AGGAGCCGTGAAA	.	88	49	60	0	C|1.000;T|0.000	0	0	0	0	0
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25918769	25918769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A2-91	NM_005835	exon6	c.G595C	p.V199L	CCCCCACACAGAG	.	173	60	130	1	.	0	0	0	0	0
HIST1H2AC	8334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26124666	26124666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2AC-90	NM_003512	exon1	c.A206T	p.N69I	CCGGCAACGCGGC	.	410	123	324	3	.	0	0	0	0	0
HIST1H2BH	8345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26252078	26252078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BH-93	NM_003524	exon1	c.T200A	p.V67D	CCTTTGTCAACGA	.	283	116	249	1	.	0	0	0	0	0
BTN3A3	10384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26451901	26451901	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTN3A3-90	NM_006994	exon11	c.1019-2A>T	.	CTCTGCAGCGGAT	.	133	40	145	0	.	0	0	0	0	0
HIST1H2BM	8342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27783029	27783029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BM-131	NM_003521	exon1	c.A208T	p.I70F	AACGACATCTTTG	.	193	60	200	0	.	0	0	0	0	0
TRIM27	5987	hgsc.bcm.edu;broad.mit.edu	37	6	28872409	28872409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM27-684	NM_006510	exon8	c.C980G	p.P327R	AGGCTGGGGTAGG	.	6	4	8	0	.	0	0	0	0	0
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29581230	29581230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABBR1-521	NM_001470	exon12	c.G1356T	p.K452N	CAGTCGCTTGGTT	.	149	52	125	0	.	0	0	0	0	0
TRIM10	10107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30126189	30126189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM10-226	NM_052828	exon3	c.G743T	p.R248M	AGCTCCCTTGCTG	.	114	31	110	0	.	0	0	0	0	0
MICB	4277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31474946	31474946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MICB-90	NM_005931	exon4	c.G761C	p.G254A	AGTGGGGGGATGT	.	315	54	278	0	.	0	0	0	0	0
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31627653	31627653	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf47-91	NM_021184	exon1	c.G72T	p.P24P	GTAAGGCGGGTCA	.	154	49	136	0	.	0	0	0	0	0
LY6G6E	79136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31681633	31681633	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TGCACCCCGAGAT	.	139	45	99	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31759413	31759413	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VARS-93	NM_006295	exon8	c.C1074T	p.N358N	GATGGCGTTGGTG	.	251	43	231	0	.	0	0	0	0	0
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31922485	31922485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002904	exon7	c.G589A	p.D197N	CTCTGTCCCGGTT	.	78	29	83	0	.	0	0	0	0	0
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31926215	31926215	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002904	exon2	c.G9A	p.V3V	GGGTATCACCAAC	.	78	34	63	0	.	0	0	0	0	0
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33164382	33164382	+	Silent	SNP	C	C	A	rs148086899	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXRB-189	NM_021976	exon5	c.G822T	p.A274A	CTGTACCGCTGCA	.	60	12	67	0	C|1.000;T|0.000	0	0	0	0	0
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33283358	33283358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB22-69	NM_001145338	exon2	c.G1336T	p.G446W	GGTTCCCTGGTGG	.	259	93	236	0	.	0	0	0	0	0
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33381015	33381015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF1-226	NM_002636	exon5	c.G380C	p.G127A	CCCCTGGAGAGGG	.	122	57	142	0	.	0	0	0	0	0
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34101175	34101175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM4-525	NM_001256811	exon2	c.G99T	p.K33N	TTTGGGCTTTCCC	.	210	76	127	0	.	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38890846	38890846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH8-615	NM_001206927	exon72	c.G10675T	p.D3559Y	CTTAATGACGCTG	.	37	9	45	0	.	0	0	0	0	0
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39162077	39162077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK5-227	NM_003740	exon4	c.G502T	p.V168L	CCCACACGATGAA	.	401	134	358	1	.	0	0	0	0	0
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39284652	39284652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK16-229	NM_001135106	exon4	c.G567T	p.M189I	GAAGACCATGGGT	.	112	40	106	0	.	0	0	0	0	0
DAAM2	23500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39851832	39851832	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAAM2-228	NM_015345	exon15	c.A1940T	p.Y647F	CAGCCTACCAGAG	.	96	45	91	0	.	0	0	0	0	0
LRFN2	57497	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40359771	40359771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN2-93	NM_020737	exon3	c.G2281A	p.G761S	GCATGCCGTTGAC	.	312	116	233	1	.	0	0	0	0	0
FOXP4	116113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41555166	41555166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP4-289	NM_001012426	exon7	c.C788G	p.A263G	CGTTTGCCGCTCC	.	333	42	192	0	.	0	0	0	0	0
PTCRA	171558	hgsc.bcm.edu	37	6	42893152	42893152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTCRA-92	NM_001243168	exon4	c.C623A	p.S208Y	TCGGCTCCCATCG	.	78	31	5	0	.	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	15	6	0	0	C|0.673;A|0.327	0	0	0	0	0
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43038449	43038449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLC4-94	NM_201523	exon8	c.C1055G	p.P352R	ATCATCCAGATGT	.	293	111	207	0	.	0	0	0	0	0
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43266402	43266402	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC22A7-90	NM_006672	exon1	c.G306C	p.G102G	CCGTGGGGAGCTG	.	130	55	103	0	.	0	0	0	0	0
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43472938	43472938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TJAP1-90	NM_001146016	exon11	c.G1019T	p.R340L	AGGTTCGGATCCC	.	107	35	122	0	.	0	0	0	0	0
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43488718	43488718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR1C-90	NM_203290	exon8	c.G854T	p.R285I	TCAGCAGAGAAAT	.	91	34	68	0	.	0	0	0	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46657182	46657182	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD6-138	NM_001168359	exon1	c.G1317A	p.S439S	ACAGTCGTGTTGC	.	50	21	56	0	.	0	0	0	0	0
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46677128	46677128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G7-90	NM_005084	exon9	c.G805T	p.V269L	CAATTACTGCTAT	.	80	16	53	0	.	0	0	0	0	0
ANKRD66	100287718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46717703	46717703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001162435	exon2	c.G140C	p.R47T	TGCCCAGAGTTTC	.	77	14	57	0	.	0	0	0	0	0
GPR111	222611	hgsc.bcm.edu	37	6	47649787	47649793	+	Frame_Shift_Del	DEL	GCAGATG	GCAGATG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GCAGATG	GCAGATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.1288_1294del	p.430_432del	CTGATGGCAGATG	.	278	0	261	0	.	0	0	0	0	0
GPR111	222611	hgsc.bcm.edu	37	6	47649791	47649791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.A1292G	p.D431G	TGGCAGATGTGTG	.	278	34	269	0	.	0	0	0	0	0
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49574560	49574560	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHAG-154	NM_000324	exon10	c.1212+1G>A	.	ACAGTACCTTCCA	.	82	33	76	0	.	0	0	0	0	0
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49701562	49701562	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRISP3-92	NM_001190986	exon6	c.347-1G>T	.	TTAGACCTAAGAA	.	151	63	124	0	.	0	0	0	0	0
PGK2	5232	hgsc.bcm.edu;bcgsc.ca	37	6	49754216	49754216	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.685delG	p.D229fs	CTTTGTCCAGCAT	.	289	86	322	2	.	0	0	0	0	0
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49754711	49754711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.C190G	p.L64V	GACCTAGATGACT	.	182	61	164	0	.	0	0	0	0	0
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49936521	49936521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DEFB113-90	NM_001037729	exon2	c.G118T	p.G40C	AAGCACCACGAAC	.	77	28	99	0	.	0	0	0	0	0
PKHD1	5314	ucsc.edu;bcgsc.ca	37	6	51774097	51774097	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon40	c.G6666T	p.L2222L	TCCCACCAGAGTG	.	160	50	161	2	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907711	51907711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.C3043A	p.L1015I	CATTTAGGAAGAG	.	111	31	120	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907765	51907765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.A2989T	p.M997L	CCAACATCAAGAT	.	155	63	161	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51908447	51908447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon26	c.G2797T	p.V933F	AATGGACACAGGG	.	110	41	106	0	.	0	0	0	0	0
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52141266	52141266	+	Missense_Mutation	SNP	G	G	A	rs144158830	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCM3-228	NM_002388	exon9	c.C1309T	p.R437C	CCAGACGGCGCTC	.	127	54	117	0	G|0.999;A|0.001	0	0	0	0	0
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	53409375	53409375	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GCLC-515	NM_001197115	exon1	c.G69T	p.R23R	GTGCCGCCGCACG	.	114	41	47	0	.	0	0	0	0	0
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54791229	54791229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83B-96	NM_001010872	exon3	c.G505T	p.A169S	GTTGAGGCATCAA	.	66	24	64	0	.	0	0	0	0	0
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56426291	56426291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_015548	exon38	c.G6256T	p.G2086C	AGAGGCCAAGATC	.	121	48	95	1	.	0	0	0	0	0
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56468904	56468904	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CTCCAACATGTTC	.	73	25	88	0	.	0	0	0	0	0
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56480710	56480710	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_001723	exon24	c.C7555T	p.Q2519X	CACACTGTCGCAG	.	153	51	138	1	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56495106	56495106	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_001723	exon17	c.G2607T	p.L869L	TTCACACAGTTTA	.	59	10	85	0	.	0	0	0	0	0
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56965611	56965611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF451-93	NM_001257273	exon4	c.G397T	p.E133X	ATCTCTGAGACAG	.	61	18	61	0	.	0	0	0	0	0
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	62407105	62407105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHDRBS2-272	NM_152688	exon8	c.G947T	p.S316I	CCGTAGCTGTCAT	.	114	32	80	0	.	0	0	0	0	0
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65300987	65300987	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142800	exon26	c.G4773T	p.A1591A	TAATATCGCTGAG	.	91	27	99	1	.	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65655797	65655797	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142800	exon15	c.G2270C	p.C757S	CACACACACTGGT	.	52	16	50	0	.	0	0	0	0	0
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66053984	66053984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142801	exon10	c.G1546C	p.D516H	CAGGATCGTTCAC	.	185	64	185	1	.	0	0	0	0	0
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69943298	69943298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAI3-1148	NM_001704	exon18	c.C2597A	p.P866H	AGCAACCTAGAGA	.	158	49	199	0	.	0	0	0	0	0
COL19A1	1310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70639346	70639346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL19A1-156	NM_001858	exon6	c.G420T	p.K140N	AAAGAAGGTGGTG	.	116	45	119	1	.	0	0	0	0	0
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70981789	70981789	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL9A1-94	NM_001851	exon13	c.C1068A	p.G356G	ACCACGGCCCTAA	.	160	40	169	2	.	0	0	0	0	0
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	71665781	71665781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B3GAT2-93	NM_080742	exon1	c.G352T	p.D118Y	CCGCGTCCTCCAC	.	99	34	16	0	.	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	8	8	0	0	C|0.505;G|0.495	0	0	0	0	0
KHDC3L	154288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74072990	74072990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001017361	exon2	c.G342T	p.Q114H	GCTCCAGGCGAAA	.	180	63	106	1	.	0	0	0	0	0
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75814965	75814965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL12A1-142	NM_004370	exon54	c.G8222T	p.C2741F	TGTGTACATGTGC	.	176	60	211	0	.	0	0	0	0	0
TTK	7272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80744821	80744821	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTK-1299	NM_003318	exon15	c.A1734G	p.L578L	TAAACTACAACAA	.	172	73	207	1	.	0	0	0	0	0
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84290239	84290239	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNAP91-23	NM_001242792	exon23	c.C2229A	p.P743P	AGGACTGGGTGGT	.	240	97	262	0	.	0	0	0	0	0
TBX18	9096	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	85446831	85446831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX18-73	NM_001080508	exon8	c.G1396T	p.V466L	TGTTCACGGAGGT	.	161	58	158	1	.	0	0	0	0	0
HTR1E	3354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87725124	87725124	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR1E-93	NM_000865	exon2	c.C72G	p.L24L	GATGCTCATTTGC	.	339	132	300	0	.	0	0	0	0	0
RARS2	57038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88279286	88279286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RARS2-92	NM_020320	exon2	c.C59T	p.P20L	TCTGGTGGAAGAT	.	79	11	92	1	.	0	0	0	0	0
SRSF12	135295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	89827555	89827555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRSF12-90	NM_080743	exon1	c.G52T	p.A18S	CGTCCGCGACGTT	.	177	69	49	0	.	0	0	0	0	0
BACH2	60468	ucsc.edu;bcgsc.ca	37	6	90660573	90660573	+	Missense_Mutation	SNP	C	C	G	rs34335140	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BACH2-231	NM_021813	exon7	c.G1252C	p.A418P	AGAGAGCCTCCAA	.	94	28	112	2	C|0.993;T|0.007	0	0	0	0	0
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	91233443	91233443	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP3K7-980	NM_145331	exon14	c.A1416T	p.S472S	CTTTTCTGAGGTT	.	150	69	151	0	.	0	0	0	0	0
UFL1	23376	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	96999750	96999750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_015323	exon17	c.G1936T	p.A646S	TCTGCAGCAGAAG	.	196	57	217	1	.	0	0	0	0	0
MMS22L	253714	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97599708	97599708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMS22L-92	NM_198468	exon23	c.G3421A	p.V1141I	CTTTTACCATGTA	.	82	20	77	1	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	7	7	0	0	T|0.089;G|0.911	0	0	0	0	0
PRDM13	59336	broad.mit.edu;bcgsc.ca	37	6	100062487	100062487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM13-135	NM_021620	exon4	c.T1976A	p.L659H	GTCTGCTCGCCAA	.	184	77	50	1	.	0	0	0	0	0
MCHR2	84539	bcgsc.ca;mdanderson.org	37	6	100382334	100382334	+	Missense_Mutation	SNP	C	C	A	rs181709988	by1000genomes;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCHR2-525	NM_001040179	exon5	c.G647T	p.C216F	ATATAGCACACCA	.	31	13	40	1	C|1.000;G|0.000	0	0	0	0	0
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	102124584	102124584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK2-157	NM_021956	exon4	c.G628C	p.D210H	ACAAAGGATGCAA	.	195	74	196	0	.	0	0	0	0	0
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	108041954	108041954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCML4-91	NM_198081	exon6	c.C926T	p.A309V	CTGGAGGCTGGAG	.	75	23	57	1	.	0	0	0	0	0
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	108068044	108068044	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCML4-91	NM_198081	exon4	c.G336A	p.R112R	CTTCTTCCTCTCC	.	138	42	106	1	.	0	0	0	0	0
LACE1	246269	broad.mit.edu	37	6	108677903	108677903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LACE1-90	NM_145315	exon5	c.G527C	p.R176P	TACATCGCCTTAA	.	53	6	42	0	.	0	0	0	0	0
RPF2	84154	broad.mit.edu	37	6	111329294	111329294	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPF2-92	NM_032194	exon7	c.T447C	p.D149D	CGATGATTTCGAT	.	151	4	110	0	.	0	0	0	0	0
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112375568	112375568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WISP3-90	NM_198239	exon1	c.G62T	p.G21V	TGCAGGGGCTCCT	.	121	42	107	0	.	0	0	0	0	0
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114378755	114378755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A707T	p.K236I	AGATGTTTGGTGT	.	139	55	113	0	.	0	0	0	0	0
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	114379130	114379130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A332C	p.N111T	TGTAGGTTCAGCA	.	99	10	65	0	.	0	0	0	0	0
GPRC6A	222545	hgsc.bcm.edu	37	6	117116960	117116960	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon5	c.1587delG	p.G529fs	CATTTGCCCAGGA	.	74	23	57	2	.	0	0	0	0	0
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117130541	117130541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon2	c.G434T	p.G145V	CCAGAACCTATGA	.	109	50	85	0	.	0	0	0	0	0
ROS1	6098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117709087	117709087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROS1-1353	NM_002944	exon13	c.C1870T	p.H624Y	AAATATGAGTGAC	.	178	57	132	2	.	0	0	0	0	0
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563361	121563361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf170-92	NM_152730	exon18	c.G2143T	p.A715S	TTTTTGCATATCG	.	77	21	85	0	.	0	0	0	0	0
NKAIN2	154215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	124979429	124979429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKAIN2-23	NM_001040214	exon4	c.C371T	p.P124L	CTGCCCCAGACTG	.	184	75	183	1	.	0	0	0	0	0
LAMA2	3908	ucsc.edu;bcgsc.ca	37	6	129641765	129641765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA2-162	NM_000426	exon28	c.G4141T	p.D1381Y	AAATGTGATTGTC	.	144	45	140	3	.	0	0	0	0	0
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129766860	129766860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA2-162	NM_000426	exon45	c.G6323T	p.R2108L	CTGACCGGCTAAT	.	132	52	133	1	.	0	0	0	0	0
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130761684	130761684	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C117G	p.P39P	GAAGCCCATCAGG	.	88	41	116	0	.	0	0	0	0	0
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762826	130762826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C1259A	p.P420H	GTTGGCCTAGGTT	.	73	27	52	0	.	0	0	0	0	0
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762909	130762909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.G1342T	p.V448F	CCCCAAGTTGCCA	.	55	22	62	0	.	0	0	0	0	0
TAAR5	9038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132910041	132910041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAAR5-91	NM_003967	exon1	c.T785A	p.L262H	CACAAGAGGTATA	.	310	120	269	2	.	0	0	0	0	0
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132910108	132910108	+	Missense_Mutation	SNP	G	G	T	rs188569215	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAAR5-91	NM_003967	exon1	c.C718A	p.L240M	CAGCCAGGCTTTT	.	140	55	125	0	G|0.999;A|0.001	0	0	0	0	0
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	133032885	133032885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VNN1-93	NM_004666	exon2	c.C304T	p.P102S	CTTCAGGGTCTGG	.	114	27	96	0	.	0	0	0	0	0
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133836501	133836501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA4-578	NM_172105	exon17	c.G1544T	p.R515M	AGTTAAGGGCAGA	.	111	25	114	1	.	0	0	0	0	0
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135754223	135754223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_001134832	exon15	c.G2208T	p.L736F	TCGGACCAATATG	.	189	62	166	0	.	0	0	0	0	0
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135754324	135754324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_001134832	exon15	c.G2107T	p.A703S	ATTTAGCCGTGTA	.	89	34	116	0	.	0	0	0	0	0
BCLAF1	9774	hgsc.bcm.edu	37	6	136582203	136582396	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCLAF1-228	NM_014739	exon13	c.2758_3016del	p.920_921del	AAAAAATGGTGGG	.	143	0	145	0	.	0	0	0	0	0
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136599766	136599766	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCLAF1-228	NM_014739	exon4	c.G253T	p.G85X	TACCTCCTCCTCC	.	200	21	147	0	.	0	0	0	0	0
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139563758	139563758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXLNB-91	NM_153235	exon10	c.C1960A	p.P654T	GTGGGGGCTGCCT	.	105	20	70	0	.	0	0	0	0	0
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142691775	142691775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR126-91	NM_198569	exon4	c.G914T	p.G305V	TAAAAGGGGACAT	.	136	51	149	0	.	0	0	0	0	0
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143749780	143749780	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT2-90	NM_182503	exon5	c.A501G	p.L167L	GGTCTTTAACATT	.	89	36	88	0	.	0	0	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151672276	151672276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP12-293	NM_005100	exon4	c.C2750T	p.S917L	CTGCTTCAGTGAC	.	135	27	132	0	.	0	0	0	0	0
CCDC170	80129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151917690	151917690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_025059	exon9	c.T1688A	p.L563Q	CCAAACTGGCCGA	.	161	51	126	0	.	0	0	0	0	0
ESR1	2099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152201872	152201872	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESR1-1042	NM_000125	exon3	c.C726G	p.L242L	CCGGCTCCGTAAA	.	84	33	73	1	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	152647669	152647669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_182961	exon79	c.15055delG	p.A5019fs	TGCCTGCCAGCTG	.	126	33	115	0	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152737529	152737529	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon41	c.C6064T	p.Q2022X	TCTGCTGAAGAGC	.	34	11	40	0	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152793441	152793441	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon15	c.C1479G	p.A493A	CCTCTCGGCCATG	.	112	35	92	0	.	0	0	0	0	0
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	153042879	153042879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCT1-91	NM_025107	exon2	c.G199T	p.D67Y	TCAGAGGACCTTA	.	62	30	46	0	.	0	0	0	0	0
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154587053	154587053	+	Missense_Mutation	SNP	C	C	A	rs139019503	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IPCEF1-90	NM_001130699	exon4	c.G29T	p.S10I	AGAGCACTGCCAT	.	119	44	120	0	C|1.000;T|0.000	0	0	0	0	0
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	155450837	155450837	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIAM2-93	NM_012454	exon3	c.A480T	p.R160R	CCCCCGAGTGCTC	.	60	20	62	1	.	0	0	0	0	0
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155458506	155458506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIAM2-93	NM_012454	exon4	c.C1390G	p.R464G	TTCATGCGAGAGT	.	120	36	130	0	.	0	0	0	0	0
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155764494	155764494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX3-91	NM_015718	exon5	c.G399T	p.E133D	GGCCTCCTCGGAC	.	218	85	189	0	.	0	0	0	0	0
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157505500	157505500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID1B-154	NM_020732	exon13	c.G3481T	p.E1161X	GGGGAGGAGCCCC	.	187	75	141	0	.	0	0	0	0	0
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159401950	159401950	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPH3-92	NM_031924	exon6	c.C1141T	p.Q381X	CCCACTGCTGTTT	.	156	47	124	0	.	0	0	0	0	0
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159646610	159646610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FNDC1-138	NM_032532	exon8	c.T928A	p.W310R	GCCAGGTGGGATT	.	193	66	154	2	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160468850	160468850	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2256delC	p.F752fs	CAACTTCCGGTGG	.	123	39	100	0	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu	37	6	160468851	160468852	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2257_2258del	p.753_753del	AACTTCCGGTGGT	.	120	0	100	0	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	160468852	160468852	+	Missense_Mutation	SNP	G	G	T	rs141234361	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.G2258T	p.R753L	ACTTCCGGTGGTA	.	121	40	100	0	G|1.000;A|0.000	0	0	0	0	0
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161134147	161134147	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLG-94	NM_000301	exon5	c.T537A	p.L179L	CATTCTTGAGTGT	.	137	46	100	0	.	0	0	0	0	0
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165801852	165801852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE10A-519	NM_001130690	exon17	c.G1747T	p.A583S	GAGCGGCCAGAGG	.	177	55	130	0	.	0	0	0	0	0
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166580287	166580287	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	T-516	NM_003181	exon3	c.C264A	p.Y88X	GAAGGAGTACATG	.	225	81	135	0	.	0	0	0	0	0
UNC93A	54346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167721323	167721323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC93A-90	NM_018974	exon7	c.G1033T	p.D345Y	CGTGCTGACCATC	.	204	70	186	1	.	0	0	0	0	0
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167755029	167755029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL2-92	NM_031949	exon3	c.A1641T	p.K547N	TGGCAAAGCTCCA	.	165	54	113	0	.	0	0	0	0	0
KIF25	3834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168442775	168442775	+	Missense_Mutation	SNP	C	C	T	rs138311357	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF25-92	NM_030615	exon7	c.C773T	p.A258V	GGCATGCGGAGCA	.	219	33	182	1	C|0.999;A|0.001	0	0	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169629675	169629675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THBS2-95	NM_003247	exon15	c.G2251T	p.D751Y	TCTCATCGGTCAC	.	97	31	69	0	.	0	0	0	0	0
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1976421	1976421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAD1L1-1083	NM_003550	exon17	c.G1709T	p.R570L	CGCAGTCGCTCGC	.	117	40	18	0	.	0	0	0	0	0
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2976779	2976779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon9	c.G1233T	p.E411D	CTTCTCCTCCAGC	.	145	40	157	0	.	0	0	0	0	0
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2978414	2978414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon7	c.G916C	p.E306Q	CGTGTTCCAAGAT	.	75	13	61	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	9	5	0	0	G|0.411;T|0.589	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5401321	5401321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNRC18-46	NM_001080495	exon14	c.C4565T	p.A1522V	CTGCGTGCCAAGC	.	73	18	12	0	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	20	12	0	0	G|0.456;C|0.544	0	0	0	0	0
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6554007	6554007	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145118	exon8	c.A1422T	p.T474T	CTTACCTGTCATG	.	27	11	46	0	.	0	0	0	0	0
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6561558	6561558	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145118	exon5	c.C950A	p.S317X	TCACCTGACTTGA	.	104	30	95	0	.	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11419313	11419313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.G4534A	p.D1512N	CGGCATCAGGCTG	.	86	21	127	0	.	0	0	0	0	0
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11581087	11581087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon6	c.C1781G	p.P594R	GTGCCTGGACCAC	.	216	51	264	1	.	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	11676331	11676331	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon2	c.448delG	p.E150fs	CTTCTTCCCCCTT	.	71	13	147	0	.	0	0	0	0	0
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12396973	12396973	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWDE-68	NM_001135924	exon17	c.G3443C	p.W1148S	GTTTTCCACATAA	.	64	21	54	0	.	0	0	0	0	0
VWDE	221806	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	12409933	12409933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWDE-68	NM_001135924	exon12	c.G1999A	p.V667I	AGGTGACATCTAG	.	35	6	63	0	.	0	0	0	0	0
DGKB	1607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	14661070	14661070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon14	c.A1220T	p.N407I	ACTTTGTTTGGCT	.	34	9	61	0	.	0	0	0	0	0
DGKB	1607	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	14775769	14775769	+	Silent	SNP	G	G	T	rs10238323	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon4	c.C219A	p.A73A	AAGCTCGGCTTCC	.	104	22	146	0	G|0.984;A|0.016	0	0	0	0	0
HDAC9	9734	hgsc.bcm.edu;bcgsc.ca	37	7	18869083	18869083	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC9-227	NM_178423	exon19	c.2370-1G>-	.	TCCGCAGGGGGTT	.	33	14	54	1	.	0	0	0	0	0
TMEM196	256130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	19765212	19765212	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM196-22	NM_152774	exon3	c.A384T	p.L128L	ACTGGCTAGTCGA	.	153	49	220	1	.	0	0	0	0	0
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20444293	20444293	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGB8-227	NM_002214	exon11	c.G1730C	p.G577A	TCAGTGGCTGGGA	.	152	36	223	0	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	20824578	20824578	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SP8-91	NM_182700	exon2	c.C858T	p.S286S	GTGCGAGGAGGCG	.	30	6	32	0	.	0	0	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21789958	21789958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH11-146	.	.	.	.	CTTTATGGCCAGG	.	60	11	85	0	.	0	0	0	0	0
IGF2BP3	10643	ucsc.edu;bcgsc.ca	37	7	23390952	23390952	+	Silent	SNP	G	G	T	rs41340451	bycluster	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2BP3-92	NM_006547	exon6	c.C655A	p.R219R	TGTTCCGAATGGT	.	105	25	140	0	G|1.000;|0.000	0	0	0	0	0
MPP6	51678	bcgsc.ca	37	7	24663284	24663284	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MPP6-90	.	.	.	.	TCAGCAGCAATGC	.	30	9	44	1	.	0	0	0	0	0
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24789190	24789190	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DFNA5-91	NM_001127453	exon2	c.G204T	p.P68P	TGGACTCGGAAAT	.	32	7	42	0	.	0	0	0	0	0
C7orf31	136895	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	25182373	25182373	+	Missense_Mutation	SNP	C	C	G	rs17150982	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C7orf31-90	NM_138811	exon8	c.G745C	p.A249P	TAGGAGCGAAGGT	.	58	17	71	0	C|0.971;T|0.029	0	0	0	0	0
HOXA3	3200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27148164	27148164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXA3-153	NM_030661	exon3	c.G702T	p.Q234H	CTTGATCTGGCGC	.	93	17	134	1	.	0	0	0	0	0
EVX1	2128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27283071	27283071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVX1-91	NM_001989	exon1	c.G422A	p.S141N	AGCACAGCAAAGG	.	72	15	78	0	.	0	0	0	0	0
CREB5	9586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	28610012	28610012	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CREB5-92	NM_182898	exon5	c.G321T	p.G107G	TGGTGGGGCCATG	.	203	72	290	2	.	0	0	0	0	0
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	31377995	31377995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEUROD6-92	NM_022728	exon2	c.888delC	p.P296fs	ACCCCTGGGTGGC	.	101	22	135	0	.	0	0	0	0	0
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	34006114	34006114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon5	c.T343C	p.Y115H	AATACCTATAACA	.	50	11	107	0	.	0	0	0	0	0
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34125628	34125628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon14	c.C1669A	p.H557N	CGGGCCCATCGAG	.	117	20	172	0	.	0	0	0	0	0
AOAH	313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36726385	36726385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AOAH-91	NM_001637	exon2	c.G142T	p.V48L	CAGACACCACCAG	.	137	48	151	0	.	0	0	0	0	0
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37298802	37298802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELMO1-96	NM_014800	exon6	c.G397T	p.V133L	TCTCCACCATCTG	.	84	29	115	0	.	0	0	0	0	0
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	39379343	39379343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU6F2-90	NM_007252	exon6	c.C614A	p.P205Q	AGCACCCGCAACC	.	23	6	12	0	.	0	0	0	0	0
MPLKIP	136647	hgsc.bcm.edu	37	7	40174042	40174042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_138701	exon1	c.G125T	p.R42L	CCGTCTCGAGGGG	.	62	16	10	0	.	0	0	0	0	0
INHBA	3624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	41739811	41739811	+	Missense_Mutation	SNP	C	C	A	rs140132631		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INHBA-703	NM_002192	exon2	c.G162T	p.M54I	CTCCACCATCTCT	.	42	15	87	0	C|1.000;A|0.000	0	0	0	0	0
NPC1L1	29881	bcgsc.ca	37	7	44579180	44579180	+	Silent	SNP	G	G	C	rs2072183	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NPC1L1-94	NM_001101648	exon2	c.C816G	p.L272L	GGAGTCGAGGGCC	.	128	5	159	0	G|0.644;C|0.356;A|0.000	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45222995	45222995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAMP3-90	NM_005856	exon3	c.C431G	p.T144S	AACGCACCGACAC	.	100	29	109	0	.	0	0	0	0	0
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45753294	45753294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon20	c.G3060T	p.V1020V	ACAGGTGACTGAG	.	140	43	185	0	.	0	0	0	0	0
IGFBP1	3484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45932578	45932578	+	Missense_Mutation	SNP	G	G	T	rs201339143	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP1-946	NM_000596	exon4	c.G668T	p.G223V	TGGATGGAGAGGC	.	53	15	53	0	.	0	0	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314688	48314688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA13-521	NM_152701	exon17	c.C5425G	p.P1809A	GATAAGCCAGATA	.	34	14	74	0	.	0	0	0	0	0
IKZF1	10320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50468109	50468109	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IKZF1-1242	NM_006060	exon8	c.G1344C	p.A448A	GGACGCGCTCCGC	.	148	36	104	1	.	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	51092894	51092894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon12	c.G3680T	p.S1227I	CCCGTGCTGAACC	.	84	24	90	0	.	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51111286	51111286	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon8	c.G1200T	p.S400S	GTCCTCCGACGCA	.	79	33	108	0	.	0	0	0	0	0
POM121L12	285877	broad.mit.edu	37	7	53103415	53103415	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182595	exon1	c.G51A	p.K17K	CTGGAAGGCGGGA	.	113	22	67	3	.	0	0	0	0	0
POM121L12	285877	broad.mit.edu;bcgsc.ca	37	7	53103439	53103439	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182595	exon1	c.C75A	p.G25G	GCAAGGCCCCGAC	.	132	30	82	2	.	0	0	0	0	0
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	54617625	54617625	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182546	exon4	c.C396G	p.A132A	TGATGCCAACTAC	.	166	46	216	0	.	0	0	0	0	0
LANCL2	55915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55479679	55479679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LANCL2-516	NM_018697	exon6	c.G905T	p.R302L	AATTCCGATCTGG	.	157	53	130	0	.	0	0	0	0	0
CCT6A	908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56128072	56128072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCT6A-91	NM_001762	exon10	c.G1176T	p.R392S	AGTGAGGGACGGC	.	120	31	168	0	.	0	0	0	0	0
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71571250	71571250	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALN1-91	NM_031468	exon4	c.C274A	p.R92R	CATCCCGGTCCAG	.	96	43	94	0	.	0	0	0	0	0
MDH2	4191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75689773	75689773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDH2-228	NM_005918	exon5	c.C512T	p.T171I	TGACGACCCTGGA	.	202	69	168	0	.	0	0	0	0	0
MAGI2	9863	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131056	78131056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGI2-461	NM_012301	exon5	c.C803A	p.P268H	TGGGAGGGCATCT	.	107	33	85	1	.	0	0	0	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131057	78131057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGI2-461	NM_012301	exon5	c.C802A	p.P268T	GGGAGGGCATCTC	.	105	32	82	0	.	0	0	0	0	0
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84628911	84628911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon17	c.C2179A	p.L727I	GGTCGAGGCTGAA	.	221	76	216	0	.	0	0	0	0	0
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644451	84644451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.G1627T	p.D543Y	AACAGTCTGCGCA	.	205	81	213	0	.	0	0	0	0	0
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	84644491	84644491	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.C1587A	p.L529L	CAAGGAGAGCTGA	.	197	72	206	0	.	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86394645	86394645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM3-528	NM_000840	exon2	c.G184A	p.E62K	ATCAATGAAGACC	.	185	37	156	0	.	0	0	0	0	0
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87082308	87082308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB4-96	NM_018850	exon6	c.G488T	p.G163V	AACCATCCTATTT	.	97	29	116	0	.	0	0	0	0	0
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87138732	87138732	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB1-582	NM_000927	exon27	c.G3348T	p.V1116V	CTGGGACACGATG	.	157	24	149	0	.	0	0	0	0	0
DBF4	10926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87526653	87526653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DBF4-253	NM_006716	exon8	c.C679A	p.Q227K	ATGAGCCAGTAAG	.	71	20	72	0	.	0	0	0	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963902	88963902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C1606T	p.P536S	CCGAAACCAAAGA	.	117	32	141	0	.	0	0	0	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88966065	88966065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C3769A	p.P1257T	ATTATCCCTGCAC	.	129	50	119	0	.	0	0	0	0	0
SAMD9	54809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92732074	92732074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD9-140	NM_001193307	exon2	c.G3337A	p.E1113K	CAGGTTCTATGAT	.	103	24	99	1	.	0	0	0	0	0
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92763958	92763958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD9L-94	NM_152703	exon5	c.G1327T	p.V443L	CCAACACAGCAAA	.	38	11	44	0	.	0	0	0	0	0
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93073002	93073002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALCR-664	NM_001164737	exon11	c.G818T	p.C273F	CCTTCACAGAGCA	.	158	62	129	0	.	0	0	0	0	0
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96324204	96324204	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHFM1-227	NM_006304	exon3	c.77-1G>T	.	CCCAGTCTAAAAA	.	48	22	51	0	.	0	0	0	0	0
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97944819	97944819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAIAP2L1-91	NM_018842	exon7	c.G592T	p.D198Y	GCTTATCAACCAG	.	116	34	99	0	.	0	0	0	0	0
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99129205	99129205	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZKSCAN5-91	NM_145102	exon7	c.1853delC	p.S618fs	TGAGGTCCCACCT	.	322	90	169	0	.	0	0	0	0	0
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99169990	99169990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF655-91	NM_001085368	exon4	c.A364G	p.R122G	GAGACTAGAGAAG	.	90	5	57	0	.	0	0	0	0	0
MYL10	93408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101259519	101259519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYL10-136	NM_138403	exon6	c.G514T	p.G172C	CGAAACCTTTCCC	.	173	55	157	0	.	0	0	0	0	0
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101844740	101844740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUX1-160	NM_001202543	exon18	c.G2196T	p.Q732H	CCAGCAGGCTGCC	.	260	95	167	1	.	0	0	0	0	0
SPDYE6	729597	hgsc.bcm.edu;bcgsc.ca	37	7	101991206	101991206	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPDYE6-1	NM_001146210	exon5	c.717delC	p.P239fs	CCAGGAGGGGAAG	.	105	64	61	0	.	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103163855	103163855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RELN-574	NM_173054	exon47	c.C7473G	p.C2491W	CTGGATGCATCTC	.	139	42	144	0	.	0	0	0	0	0
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103193993	103193993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RELN-574	NM_173054	exon40	c.T5987C	p.M1996T	AACACCATAGCTG	.	123	36	105	1	.	0	0	0	0	0
PIK3CG	5294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	106509035	106509035	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3CG-1316	NM_002649	exon2	c.C1029A	p.G343G	CCACGGCAAGGAC	.	289	106	245	1	.	0	0	0	0	0
SLC26A3	1811	broad.mit.edu	37	7	107408071	107408071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC26A3-94	NM_000111	exon20	c.G2224C	p.D742H	TAAAATCAATTTT	.	45	4	56	0	.	0	0	0	0	0
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107431510	107431510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC26A3-94	NM_000111	exon5	c.C553G	p.L185V	CAGAAAGCACTGT	.	239	79	206	0	.	0	0	0	0	0
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107684339	107684339	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB4-140	NM_007356	exon29	c.C4329A	p.I1443I	ACTTTCGATCTGG	.	36	11	28	0	.	0	0	0	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107816985	107816985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon24	c.C3041A	p.T1014N	TTTAAAGTCCACC	.	62	21	51	0	.	0	0	0	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107880406	107880406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon1	c.G103T	p.D35Y	TACGATCAAGAGG	.	72	24	82	0	.	0	0	0	0	0
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108119816	108119816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNPLA8-135	NM_001256008	exon9	c.G1886T	p.G629V	AGCAAACCTCCAT	.	85	24	70	0	.	0	0	0	0	0
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114294061	114294061	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP2-295	NM_001172767	exon10	c.A1338T	p.K446N	TCCCAAACCTGTA	.	66	20	51	0	.	0	0	0	0	0
ASZ1	136991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117062373	117062373	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASZ1-515	NM_130768	exon3	c.C246T	p.P82P	CATAAGGGGAGTC	.	106	41	90	0	.	0	0	0	0	0
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117864956	117864956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD7-90	NM_019644	exon1	c.G72T	p.K24N	AGAAAAGGATTTA	.	302	101	243	0	.	0	0	0	0	0
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	119914836	119914836	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCND2-517	NM_012281	exon1	c.C150A	p.T50T	TGGCACCCGCTTC	.	177	62	169	0	.	0	0	0	0	0
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	120770181	120770181	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001105533	exon11	c.C1410A	p.L470L	TCAGCTCTTCCCA	.	82	25	62	0	.	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121624143	121624143	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRZ1-699	NM_001206838	exon8	c.C900G	p.Y300X	CTCATACACTGGA	.	65	21	47	0	.	0	0	0	0	0
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122757584	122757584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC13A1-92	NM_022444	exon14	c.G1591T	p.V531L	TTGCTACTGGTAG	.	261	109	235	1	.	0	0	0	0	0
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123270074	123270074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB15-228	NM_080928	exon9	c.C1495A	p.R499S	GTTACTCGTGTAC	.	102	30	89	0	.	0	0	0	0	0
WASL	8976	broad.mit.edu;bcgsc.ca	37	7	123329097	123329097	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WASL-90	NM_003941	exon10	c.A1455G	p.S485S	TCTACCTGAAGAA	.	46	4	41	0	.	0	0	0	0	0
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126544129	126544129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM8-581	NM_000845	exon4	c.G915T	p.W305C	GCCAATCCAGAGA	.	185	84	179	2	.	0	0	0	0	0
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126882813	126882813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM8-581	NM_000845	exon1	c.G446T	p.G149V	ATGACGCCAGAAA	.	259	109	194	1	.	0	0	0	0	0
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127253093	127253093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon6	c.G674T	p.W225L	ATTTCCCACTTGA	.	196	68	167	0	.	0	0	0	0	0
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127253928	127253928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon4	c.G420T	p.L140F	TGGAGCCAAAACA	.	90	22	62	0	.	0	0	0	0	0
LRRC4	64101	ucsc.edu;bcgsc.ca	37	7	127669562	127669562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC4-154	NM_022143	exon2	c.C1132A	p.P378T	ACATAGGGGGAGT	.	225	90	195	3	.	0	0	0	0	0
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128315858	128315858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001012454	exon2	c.G310T	p.G104C	CCCCAGGGTCCAT	.	56	26	47	0	.	0	0	0	0	0
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128845593	128845593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon4	c.C890T	p.A297V	GCCGTGCAGATGG	.	85	33	37	0	.	0	0	0	0	0
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128846172	128846172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon5	c.C1102G	p.P368A	TCACTCCCCTTTG	.	202	79	166	0	.	0	0	0	0	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131865384	131865384	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon19	c.C3600A	p.L1200L	CTCGCAGAGCAGC	.	194	76	147	0	.	0	0	0	0	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131912280	131912280	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon7	c.G1812C	p.L604L	CACGACCAGCCCA	.	244	86	213	0	.	0	0	0	0	0
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135082955	135082955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT4-90	NM_001190850	exon8	c.C845G	p.S282C	CTGAGAGAATCTG	.	62	24	41	0	.	0	0	0	0	0
PTN	5764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	136912824	136912824	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTN-516	NM_002825	exon6	c.452-2A>T	.	TTCTGCTGTGATT	.	17	7	10	0	.	0	0	0	0	0
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138363243	138363243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVOPL-68	NM_001139456	exon2	c.C110T	p.A37V	TCCACTGCATCTT	.	99	36	81	0	.	0	0	0	0	0
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139791751	139791751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon19	c.T2584G	p.S862A	GGTTTGAATTCTG	.	219	73	176	0	.	0	0	0	0	0
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139810956	139810956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon11	c.C1367T	p.P456L	TTGTCTGGAATTT	.	67	10	35	0	.	0	0	0	0	0
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140246647	140246647	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon11	c.G2130T	p.L710L	TTTGCCCAGGGCT	.	285	77	193	0	.	0	0	0	0	0
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141464522	141464522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAS2R3-90	NM_016943	exon1	c.G564T	p.W188C	TCTGTGGTACCTG	.	325	88	169	0	.	0	0	0	0	0
TAS2R38	5726	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141672602	141672602	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAS2R38-92	NM_176817	exon1	c.C888A	p.I296I	GATCAGGATGGCT	.	234	56	143	2	.	0	0	0	0	0
MGAM	8972	hgsc.bcm.edu;bcgsc.ca	37	7	141759759	141759759	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon33	c.4052delG	p.W1351fs	TTGTCTGGGGAAA	.	371	110	253	2	.	0	0	0	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141805635	141805635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon48	c.G5518A	p.D1840N	GTGACTGACAGAA	.	153	30	94	0	.	0	0	0	0	0
PRSS58	136541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141955029	141955029	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS58-24	NM_001001317	exon4	c.A282T	p.S94S	AGTGACTGAGAAG	.	234	59	122	0	.	0	0	0	0	0
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142606676	142606676	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV5-177	NM_019841	exon14	c.G1875T	p.L625L	GTCCCCCAGCCCG	.	126	38	104	0	.	0	0	0	0	0
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142638380	142638380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KEL-93	NM_000420	exon19	c.G2158T	p.G720C	GAGCACCACGTGC	.	156	51	114	0	.	0	0	0	0	0
KEL	3792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142640676	142640676	+	Missense_Mutation	SNP	C	C	A	rs150678405	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KEL-93	NM_000420	exon15	c.G1600T	p.V534L	GGGACACCTTCCA	.	184	53	125	1	C|1.000;T|0.000	0	0	0	0	0
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142723927	142723927	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR9A2-69	NM_001001658	exon1	c.C293A	p.S98X	TTGAGCGATACAT	.	392	95	250	0	.	0	0	0	0	0
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142749491	142749491	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6V1-23	NM_001001667	exon1	c.T54C	p.F18F	CTCCTTTGGTGAG	.	173	21	135	0	.	0	0	0	0	0
OR6V1	346517	broad.mit.edu	37	7	142750347	142750347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6V1-23	NM_001001667	exon1	c.C910A	p.Q304K	CAGATGCAGAGGC	.	48	9	15	0	.	0	0	0	0	0
PIP	5304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142836633	142836633	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIP-91	NM_002652	exon4	c.C339A	p.V113V	AGCCGTCGTTGAT	.	162	36	108	0	.	0	0	0	0	0
FAM115C	285966	broad.mit.edu	37	7	143421822	143421822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM115C-68	NM_173678	exon7	c.G2537T	p.X846L	GGGGATGACCAGA	.	163	29	128	0	.	0	0	0	0	0
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657461	143657461	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2F1-71	NM_012369	exon1	c.C398A	p.S133X	GATACTCGGCCAT	.	429	226	273	0	.	0	0	0	0	0
OR2F1	26211	ucsc.edu;bcgsc.ca	37	7	143657503	143657503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2F1-71	NM_012369	exon1	c.C440A	p.T147K	CCATCACATCCTG	.	508	131	335	2	.	0	0	0	0	0
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826651	143826651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2A14-90	NM_001001659	exon1	c.T446A	p.V149E	CCTGGGTGTTCAG	.	232	64	150	0	.	0	0	0	0	0
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	144098647	144098647	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOBOX-69	NM_001080413	exon4	c.G336A	p.E112E	TTCCTCCTCCCCG	.	32	8	20	0	.	0	0	0	0	0
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	145813997	145813997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP2-100	NM_014141	exon1	c.G29C	p.G10A	GCTGCGGGGCAGC	.	71	26	27	0	.	0	0	0	0	0
CNTNAP2	26047	bcgsc.ca	37	7	147844680	147844680	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP2-100	NM_014141	exon17	c.G2652T	p.R884R	GCACCGGGTCACT	.	196	66	136	3	.	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149463036	149463036	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF467-90	NM_207336	exon5	c.G555A	p.E185E	GGGGCCCTCGCCC	.	20	10	2	0	.	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149466284	149466284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF467-90	NM_207336	exon4	c.G157T	p.E53X	GGGCCTCGTGCCC	.	101	36	71	0	.	0	0	0	0	0
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149486861	149486861	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198455	exon31	c.C4635A	p.S1545S	CCCCTCCCCAGGC	.	148	47	116	1	.	0	0	0	0	0
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149518741	149518741	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198455	exon89	c.C12735A	p.C4245X	GATCTGCGAAGAT	.	155	49	133	3	.	0	0	0	0	0
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771826	150771826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A2-90	NM_003040	exon19	c.C2945T	p.P982L	TCAACCCCCTGGG	.	148	51	131	0	.	0	0	0	0	0
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151478357	151478357	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG2-658	NM_016203	exon3	c.G347C	p.R116P	GGGGAGCGTGGCG	.	63	22	55	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151947965	151947965	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLL3-1398	NM_170606	exon12	c.G1708T	p.E570X	TGGACTCCTGACC	.	57	26	50	0	.	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	153584820	153584820	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_001039350	exon1	c.51+1G>T	.	GTGATGGTGAGTG	.	144	19	111	0	.	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	153749961	153749961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon1	c.C56A	p.P19H	CCTTCCCCGCGCC	.	23	11	16	0	.	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154561206	154561206	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon9	c.C963T	p.S321S	TGATTCCCGTGTC	.	170	66	91	0	.	0	0	0	0	0
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154598776	154598776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon16	c.C1620A	p.S540R	CTTCAGCGCTTCC	.	95	29	76	1	.	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	21	12	0	0	C|0.663;G|0.337	0	0	0	0	0
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156743069	156743069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOM1-90	NM_138400	exon1	c.G638T	p.R213L	TTGCACGCGACGG	.	157	66	141	1	.	0	0	0	0	0
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1497807	1497807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLGAP2-22	NM_004745	exon2	c.C948A	p.H316Q	GCTGCACCAGGAC	.	154	90	89	2	.	0	0	0	0	0
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	1626470	1626470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLGAP2-22	NM_004745	exon9	c.G2139T	p.E713D	CACGGAGGACAAA	.	192	31	161	1	.	0	0	0	0	0
MYOM2	9172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2054093	2054093	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM2-95	NM_003970	exon22	c.C2796A	p.C932X	CGACTGCCAGGAA	.	167	38	237	1	.	0	0	0	0	0
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2090321	2090321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM2-95	NM_003970	exon35	c.G4023T	p.K1341N	AGAGAAGAGTAAG	.	117	31	136	0	.	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2800005	2800005	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon69	c.C10524A	p.L3508L	TTTGTAGAGGTAA	.	32	8	69	0	.	0	0	0	0	0
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2855623	2855623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon54	c.A8287T	p.T2763S	TGCAGGTGAAATT	.	165	44	219	2	.	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2910065	2910065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon50	c.C7579A	p.L2527I	ATTCAAGCTTGAA	.	117	24	160	0	.	0	0	0	0	0
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3216806	3216806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon21	c.G3172C	p.G1058R	GAAAACCAATTCT	.	85	11	129	1	.	0	0	0	0	0
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6599206	6599206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGPAT5-90	NM_018361	exon5	c.G520A	p.G174S	CCAGAAGGTACAA	.	55	21	76	0	.	0	0	0	0	0
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9620743	9620743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNKS-660	NM_003747	exon22	c.G3361T	p.V1121L	CAGTCAGTGGAAG	.	47	24	25	0	.	0	0	0	0	0
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10389053	10389053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS55-91	NM_001197020	exon3	c.C596G	p.A199G	CCAATGCTGGTAT	.	62	30	62	0	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	10467199	10467199	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RP1L1-139	NM_178857	exon4	c.4409delG	p.G1470fs	TGGGAGCCACTCT	.	60	19	30	0	.	0	0	0	0	0
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11607705	11607705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GATA4-90	NM_002052	exon4	c.C869A	p.P290H	GCGAGCCTGTGTG	.	78	9	46	0	.	0	0	0	0	0
USP17L2	377630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11996101	11996101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP17L2-435	NM_201402	exon1	c.C169A	p.P57T	CCACAGGAGCCAA	.	66	12	65	2	.	0	0	0	0	0
KIAA1456	57604	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	12878570	12878570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1456-90	NM_020844	exon5	c.G382A	p.A128T	GAAATGGCCAGGG	.	136	22	111	1	.	0	0	0	0	0
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17796410	17796410	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCM1-742	NM_006197	exon5	c.A504T	p.S168S	TGGATCAGCACAG	.	115	33	160	0	.	0	0	0	0	0
NAT2	10	broad.mit.edu;bcgsc.ca	37	8	18257900	18257900	+	Silent	SNP	C	C	A	rs144828000	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAT2-516	NM_000015	exon2	c.C387A	p.S129S	CTCCTCCCAGATG	.	47	10	61	0	C|1.000;T|0.000	0	0	0	0	0
NAT2	10	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18258377	18258377	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAT2-516	NM_000015	exon2	c.T864A	p.L288L	ATCCCTTACTATT	.	30	8	33	0	.	0	0	0	0	0
DOK2	9046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	21769421	21769421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOK2-226	NM_003974	exon3	c.G424A	p.A142T	TGACTGCGCTGCT	.	39	9	51	0	.	0	0	0	0	0
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21842176	21842176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPO7-273	NM_015024	exon12	c.C1297G	p.L433V	GATCCCCTGGAGG	.	41	14	47	0	.	0	0	0	0	0
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22147806	22147806	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIWIL2-91	NM_001135721	exon10	c.G1128T	p.L376L	CTTCCTGCTAGCT	.	121	40	117	0	.	0	0	0	0	0
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23179795	23179795	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL2-272	NM_002318	exon8	c.1151-1G>A	.	CGATCCCTGCAAG	.	111	33	115	0	.	0	0	0	0	0
NKX3-1	4824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23538992	23538992	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKX3-1-90	NM_006167	exon2	c.G447T	p.L149L	GGCCGACAGGTAC	.	64	21	81	0	.	0	0	0	0	0
NKX2-6	137814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23560030	23560030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKX2-6-68	NM_001136271	exon2	c.C840A	p.H280Q	GCCACCGTGTCCG	.	68	19	16	0	.	0	0	0	0	0
NEFL	4747	hgsc.bcm.edu	37	8	24813479	24813479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFL-24	NM_006158	exon1	c.G551T	p.S184I	TCGCGGCTCAGCA	.	40	12	6	0	.	0	0	0	0	0
DOCK5	80005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25101270	25101270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK5-71	NM_024940	exon2	c.G124T	p.E42X	ATGTACGAGGGTA	.	55	18	41	0	.	0	0	0	0	0
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27516983	27516983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCARA3-228	NM_182826	exon5	c.C1296T	p.S432S	CCTCTCCATGATC	.	93	17	107	0	.	0	0	0	0	0
ESCO2	157570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27646479	27646479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESCO2-90	NM_001017420	exon7	c.A1247T	p.E416V	TTCTGGAAGGAAT	.	59	17	83	0	.	0	0	0	0	0
SCARA5	286133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27779158	27779158	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCARA5-91	NM_173833	exon4	c.G846T	p.A282A	GGTGACCGCGTTG	.	213	61	127	1	.	0	0	0	0	0
NUGGC	389643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27898604	27898604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001010906	exon13	c.G1575T	p.R525S	AGAAGTCCTGGCG	.	68	23	100	0	.	0	0	0	0	0
PURG	29942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30889911	30889911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PURG-131	NM_013357	exon1	c.G388T	p.G130C	TCAGGCCCAGGTG	.	39	16	101	0	.	0	0	0	0	0
PPAPDC1B	84513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38123741	38123741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032483	exon6	c.G552T	p.R184S	ACAGAACCTCCAA	.	333	58	403	0	.	0	0	0	0	0
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38880770	38880770	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM9-227	NM_003816	exon9	c.G840T	p.V280V	TGATGTGCTGGGG	.	184	81	130	0	.	0	0	0	0	0
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41790513	41790513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099412	exon18	c.G5225A	p.G1742D	TAGCTGCCGGCAC	.	92	37	126	0	.	0	0	0	0	0
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52233364	52233364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PXDNL-70	NM_144651	exon22	c.T4240G	p.C1414G	GAGTGCAGTCTTC	.	104	52	69	0	.	0	0	0	0	0
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52284587	52284587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PXDNL-70	NM_144651	exon19	c.G3747T	p.K1249N	CGCCTGCTTCAGC	.	124	63	98	1	.	0	0	0	0	0
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55537620	55537620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RP1-102	NM_006269	exon4	c.C1178A	p.P393H	TGTCACCTATGGA	.	216	62	198	2	.	0	0	0	0	0
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	56435991	56435991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XKR4-92	NM_052898	exon3	c.G1158T	p.R386S	CGCCAGGGTCATC	.	270	115	186	0	.	0	0	0	0	0
TOX	9760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59750748	59750748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX-227	NM_014729	exon5	c.T816A	p.F272L	ATCACGAAAGAAT	.	164	73	136	0	.	0	0	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61654436	61654436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon2	c.G445T	p.A149S	CCCAGGGCTGTTC	.	231	116	129	0	.	0	0	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765660	61765660	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon31	c.G6376C	p.D2126H	TTCTTGGATGCAC	.	249	110	181	0	.	0	0	0	0	0
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	64099049	64099049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	ACCTAGTTCTCTT	.	262	84	185	0	.	0	0	0	0	0
VCPIP1	80124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67576973	67576973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCPIP1-662	NM_025054	exon1	c.G2221T	p.G741W	GTTGCCCTTTTTG	.	179	38	131	1	.	0	0	0	0	0
PPP1R42	286187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67926709	67926709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001013626	exon3	c.G248C	p.C83S	GAAATACAATTGT	.	81	25	53	0	.	0	0	0	0	0
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69069640	69069640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX2-390	NM_024870	exon35	c.G4315T	p.E1439X	TCACTGGAAAAGG	.	295	94	208	0	.	0	0	0	0	0
PRDM14	63978	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70981760	70981760	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM14-93	NM_024504	exon2	c.G336T	p.P112P	GAAGGGCGGCACT	.	98	27	70	1	.	0	0	0	0	0
NCOA2	10499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71036168	71036168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCOA2-639	NM_006540	exon21	c.C4244T	p.S1415L	GTCACTGAGGTCA	.	323	43	206	2	.	0	0	0	0	0
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73480116	73480116	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNB2-158	NM_004770	exon2	c.G147T	p.L49L	AGTCCTGTGGAGA	.	199	59	168	0	.	0	0	0	0	0
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	73849028	73849028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNB2-158	NM_004770	exon3	c.G1438T	p.D480Y	ACAAAGGACTCCG	.	115	32	86	2	.	0	0	0	0	0
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	8	77617610	77617610	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon2	c.G1287T	p.S429S	CTCATCGTCTGAG	.	163	36	142	2	.	0	0	0	0	0
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618388	77618388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon2	c.G2065T	p.G689C	GCCCGGGGTGAGA	.	119	73	119	0	.	0	0	0	0	0
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77620165	77620165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon3	c.2975delC	p.A992fs	GTATTGCCATTGG	.	290	69	193	0	.	0	0	0	0	0
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77763363	77763363	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.T4206C	p.C1402C	CCATTGTAGCTTG	.	141	43	159	1	.	0	0	0	0	0
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77763737	77763737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.C4580A	p.P1527H	AAGGGCCCAATTT	.	247	78	172	1	.	0	0	0	0	0
ZFHX4	79776	broad.mit.edu;bcgsc.ca	37	8	77764446	77764446	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.G5289T	p.G1763G	ATTTGGGATGCCT	.	65	33	62	1	.	0	0	0	0	0
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	8	77766416	77766416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.C7259A	p.P2420H	CCTCTCCCCCTTC	.	227	104	172	2	.	0	0	0	0	0
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77776722	77776722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon11	c.C10772G	p.S3591C	ATAATTCTTTGGA	.	262	38	178	0	.	0	0	0	0	0
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412557	81412557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB10-522	NM_023929	exon2	c.G1801T	p.V601L	TGCTCAGTAATGC	.	143	72	131	0	.	0	0	0	0	0
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82359617	82359617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMP2-90	NM_002677	exon1	c.G5A	p.S2N	TTGTTGCTCATCG	.	122	37	110	0	.	0	0	0	0	0
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	86162997	86162997	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CA13-90	NM_198584	exon2	c.T66A	p.P22P	TTTCCCTATTGCT	.	234	104	183	0	.	0	0	0	0	0
PSKH2	85481	bcgsc.ca	37	8	87076709	87076709	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSKH2-385	NM_033126	exon2	c.C337A	p.R113R	CCCGCCGCAGGAC	.	152	63	103	3	.	0	0	0	0	0
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87162446	87162446	+	Missense_Mutation	SNP	C	C	A	rs187338795	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP6V0D2-90	NM_152565	exon6	c.C745A	p.P249T	CTCTATCCTGAGG	.	202	69	106	1	C|0.999;T|0.001	0	0	0	0	0
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88885067	88885067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L2-91	NM_152418	exon1	c.C1133A	p.A378E	CCTGGTGCTCCTC	.	91	32	68	0	.	0	0	0	0	0
TMEM55A	55529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92008967	92008967	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM55A-90	NM_018710	exon6	c.C545G	p.S182X	CCCACTGAGGAGC	.	216	97	161	0	.	0	0	0	0	0
LRRC69	100130742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92145519	92145519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001129890	exon4	c.G565T	p.G189X	AACATTGGAGTTT	.	62	28	49	0	.	0	0	0	0	0
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92972688	92972688	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RUNX1T1-1196	NM_001198679	exon12	c.C1774A	p.R592R	AGTATCGGGCTGT	.	86	26	72	0	.	0	0	0	0	0
RAD54B	25788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95403988	95403988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAD54B-539	NM_012415	exon10	c.C1658A	p.A553E	TGTAGTGCTCCTG	.	137	31	106	1	.	0	0	0	0	0
MIR875	100126309	bcgsc.ca	37	8	100549080	100549080	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	GGTATAGTACCAC	.	60	9	68	0	.	0	0	0	0	0
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101154328	101154328	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO43-226	NM_001029860	exon2	c.154delG	p.D52fs	GAGAGTCCGCCCC	.	104	35	56	0	.	0	0	0	0	0
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101725319	101725319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PABPC1-68	NM_002568	exon5	c.A734C	p.Q245P	ACTTTCTGTGCAT	.	107	50	120	2	.	0	0	0	0	0
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104948841	104948841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon13	c.C2438T	p.T813I	ACCAAACATTCAT	.	106	26	80	0	.	0	0	0	0	0
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105263996	105263996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon24	c.C3998A	p.A1333D	GAAGAGCTTCCCA	.	153	49	120	0	.	0	0	0	0	0
DCSTAMP	81501	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105361150	105361150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001257317	exon2	c.G370T	p.G124C	CTAGATGGTATGA	.	152	65	152	2	.	0	0	0	0	0
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	105405152	105405152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPYS-229	NM_001385	exon8	c.G1303A	p.G435R	GCACCCCGTGGCA	.	107	11	98	0	.	0	0	0	0	0
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	105511738	105511738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP12-90	NM_013437	exon4	c.T282G	p.D94E	ATCAAAATCCTGA	.	26	10	19	0	.	0	0	0	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814687	106814687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPM2-139	NM_012082	exon8	c.G2377T	p.G793X	TTTCCAGGAATTG	.	276	76	231	0	.	0	0	0	0	0
PKHD1L1	93035	bcgsc.ca	37	8	110457146	110457146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon38	c.G5048C	p.G1683A	GCTCTGGATTTGC	.	342	147	315	4	.	0	0	0	0	0
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110464351	110464351	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon42	c.6351-2A>T	.	TTTTACAGTGAAA	.	126	64	121	0	.	0	0	0	0	0
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110502235	110502235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon60	c.G9935T	p.R3312M	GCTTCAGGGATAG	.	260	71	181	0	.	0	0	0	0	0
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113237100	113237100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon71	c.C11024G	p.A3675G	AAAGCTGCTTGGC	.	264	82	258	1	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113516042	113516042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon30	c.C5060A	p.T1687N	AATCCAGTGTAAC	.	106	48	78	0	.	0	0	0	0	0
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	114111074	114111074	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon5	c.G828T	p.G276G	TGTGTCCCCAGGC	.	188	59	139	1	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114326847	114326847	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon2	c.C354A	p.Y118X	TGATAAGTAGTCG	.	151	61	110	0	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114449071	114449071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon1	c.C13A	p.R5S	CTTTGCGGATCCC	.	74	24	59	0	.	0	0	0	0	0
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	118183272	118183272	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A8-229	NM_001172811	exon9	c.683-1G>C	.	TTGTCAGGTGTGC	.	172	68	128	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	25	22	0	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120252405	120252405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.G304A	p.D102N	TTTTAGGATTTTG	.	24	8	18	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120252497	120252497	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.T396C	p.N132N	TTGCAATACAACC	.	57	13	38	0	.	0	0	0	0	0
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121215990	121215990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL14A1-543	NM_021110	exon9	c.C920A	p.S307Y	TCGCCTCTGAACC	.	179	62	123	2	.	0	0	0	0	0
TMEM65	157378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125339634	125339634	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM65-68	NM_194291	exon3	c.A378T	p.I126I	AAACCCTATGAAA	.	190	51	156	0	.	0	0	0	0	0
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	128428179	128428179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.68delG	p.W23fs	GGCCATGGGGGGC	.	61	19	46	0	.	0	0	0	0	0
POU5F1B	5462	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	128428183	128428183	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G72T	p.G24G	ATGGGGGGCGGAG	.	60	20	49	0	.	0	0	0	0	0
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128428187	128428187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G76C	p.E26Q	GGGGCGGAGCCGG	.	61	23	52	0	.	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131964240	131964240	+	Missense_Mutation	SNP	C	C	A	rs138524416	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY8-157	NM_001115	exon3	c.G1115T	p.R372L	ACGAGCCGCTCCT	.	216	59	150	0	C|1.000;T|0.000	0	0	0	0	0
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133090001	133090001	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145095	exon11	c.C1143A	p.G381G	TGGGCTGCCAGGT	.	130	60	96	0	.	0	0	0	0	0
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133187720	133187720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNQ3-138	NM_004519	exon5	c.G913T	p.D305Y	GGGCATCTGCATA	.	227	108	166	0	.	0	0	0	0	0
SLA	6503	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	134050829	134050829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLA-279	NM_006748	exon7	c.G891T	p.M297I	ACCATACATCAGG	.	244	72	196	2	.	0	0	0	0	0
SLA	6503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134072520	134072520	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLA-279	NM_006748	exon1	c.C6G	p.L2L	TTTAGAGAGCATC	.	173	54	124	0	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134145773	134145773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TG-145	NM_003235	exon47	c.C8057A	p.P2686H	CCTGGCCTGACTT	.	169	73	163	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139158277	139158277	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon15	c.C3465A	p.L1155L	CAGCCGGAGGTCT	.	67	25	39	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139165292	139165292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon13	c.G1426T	p.V476F	TTATAACTTCTTC	.	163	33	138	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139190892	139190892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon10	c.G915T	p.K305N	CAGATCCTTGCTT	.	235	58	204	0	.	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139712358	139712358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL22A1-103	NM_152888	exon32	c.G2589T	p.M863I	TACGGGCATCCGT	.	136	47	103	0	.	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu	37	8	139890282	139890282	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL22A1-103	NM_152888	exon3	c.C369T	p.Y123Y	CGTGATGTAGCGG	.	130	15	5	0	.	0	0	0	0	0
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143694448	143694448	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARC-135	NM_015193	exon1	c.C1185A	p.P395P	CTACTCGGGCTGG	.	143	44	47	0	.	0	0	0	0	0
ARC	23237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143694832	143694832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARC-135	NM_015193	exon1	c.C801G	p.F267L	CTTCTTGAACTCC	.	169	87	126	1	.	0	0	0	0	0
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_016647	exon1	c.C429T	p.G143G	GGACGGCTTCGTG	.	7	7	0	0	C|0.534;T|0.466	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	8	0	0	A|0.118;G|0.882	0	0	0	0	0
TIGD5	84948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144681841	144681841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIGD5-90	NM_032862	exon1	c.G1768T	p.E590X	GCCGGGGAGGCCG	.	166	66	70	0	.	0	0	0	0	0
FAM83H	286077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144811162	144811162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83H-92	NM_198488	exon4	c.G712C	p.A238P	CCACGGCACAGTC	.	224	95	177	2	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940543	144940543	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	256	25	27	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940615	144940615	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.C6807T	p.T2269T	GAAGCCGGTGGCC	.	94	12	1	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144941957	144941957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.G5465T	p.G1822V	AGGCCCCCACTCT	.	160	57	110	0	.	0	0	0	0	0
PLEC	5339	broad.mit.edu;bcgsc.ca	37	8	144991067	144991067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon32	c.G13333C	p.G4445R	GCTGCCCCGTGAT	.	208	101	51	1	.	0	0	0	0	0
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144991254	144991254	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon32	c.C13146T	p.S4382S	GGAACGGGAGCGG	.	346	125	207	1	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	14	14	0	0	C|0.740;T|0.260	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	36	36	0	0	A|0.738;G|0.262	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	19	19	1	0	C|0.731;T|0.269	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	39	39	0	0	G|0.246;A|0.754	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPLAH-68	.	.	.	.	CCCGAGCCCCCCG	.	11	11	1	0	.	0	0	0	0	0
GPAA1	8733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145140943	145140943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPAA1-90	NM_003801	exon12	c.C1781A	p.T594N	ACCACACCTACGG	.	98	12	66	0	.	0	0	0	0	0
MROH1	727957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145245734	145245734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099280	exon8	c.G610T	p.D204Y	AACCTGGACCGAG	.	169	54	108	1	.	0	0	0	0	0
TONSL	4796	hgsc.bcm.edu	37	8	145661675	145661675	+	Missense_Mutation	SNP	G	G	A	rs7830832	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TONSL-92	NM_013432	exon17	c.C2141T	p.A714V	ACATGGGCCTGAG	.	11	6	4	0	G|0.593;A|0.407	0	0	0	0	0
CYHR1	50626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145678757	145678757	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CYHR1-90	NM_138496	exon3	c.C333T	p.P111P	ACAATTGGGGCAC	.	264	113	189	2	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	21	21	0	0	G|0.992;C|0.006	0	0	0	0	0
KANK1	23189	ucsc.edu;bcgsc.ca	37	9	712593	712593	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KANK1-517	NM_001256876	exon7	c.T1827A	p.S609S	GGAGTCTGTGAAC	.	181	106	234	3	.	0	0	0	0	0
DMRT3	58524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	990798	990798	+	Missense_Mutation	SNP	G	G	T	rs148970201	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMRT3-516	NM_021240	exon2	c.G1212T	p.R404S	GCTGAGGTCCCAG	.	98	55	130	0	G|0.999;A|0.000	0	0	0	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8518129	8518129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_130392	exon10	c.C1262A	p.P421Q	TCCCTCGGGGCAC	.	138	64	224	0	.	0	0	0	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8636699	8636699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_001040712	exon2	c.G210T	p.E70D	TAATACCTCAAAT	.	138	88	213	0	.	0	0	0	0	0
FREM1	158326	bcgsc.ca	37	9	14842322	14842322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FREM1-138	NM_144966	exon10	c.G1730C	p.G577A	ATCAGTCCTGGCC	.	61	27	102	3	.	0	0	0	0	0
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19063554	19063554	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAUS6-92	NM_017645	exon13	c.A1401G	p.S467S	TGAAACTGACTGC	.	139	77	234	0	.	0	0	0	0	0
LINGO2	158038	ucsc.edu;bcgsc.ca	37	9	27949236	27949236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LINGO2-516	NM_001258282	exon7	c.C1434A	p.S478R	CATCCCGCTGTCT	.	62	34	108	2	.	0	0	0	0	0
TMEM8B	51754	bcgsc.ca	37	9	35842566	35842566	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM8B-91	NM_001042590	exon6	c.A131T	p.N44I	TGCGCAACGAGCT	.	110	61	145	3	.	0	0	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170829	36170829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCIN-92	NM_005893	exon1	c.G1330T	p.V444L	GTCGGGGTAGTGG	.	156	86	198	0	.	0	0	0	0	0
SPATA31A6	389730	broad.mit.edu;mdanderson.org	37	9	43626768	43626768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145196	exon4	c.A1919T	p.Q640L	GAGGACTGCCAGG	.	27	15	24	0	.	0	0	0	0	0
SPATA31A6	389730	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	43627064	43627064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145196	exon4	c.G1623T	p.W541C	CAAAGGCCATTCA	.	16	10	22	0	.	0	0	0	0	0
CNTNAP3B	728577	bcgsc.ca	37	9	43815873	43815873	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001201380	exon5	c.T627C	p.S209S	TATTTCTTTGAAA	.	430	98	389	0	.	0	0	0	0	0
CNTNAP3B	728577	bcgsc.ca	37	9	43822703	43822703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001201380	exon8	c.C1257A	p.F419L	GAGTTTCGTCCTC	.	494	89	440	0	.	0	0	0	0	0
SPATA31A5	727905	broad.mit.edu;bcgsc.ca	37	9	65507526	65507526	+	Missense_Mutation	SNP	G	G	T	rs201014618	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001113541	exon3	c.C289A	p.L97M	AAAGCAGGTCCGA	.	1455	326	1209	2	G|0.998;C|0.002	0	0	0	0	0
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	73027994	73027994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLF9-90	NM_001206	exon1	c.G286C	p.D96H	CGCTGTCGGATCC	.	230	39	205	0	.	0	0	0	0	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	74349872	74349872	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM2-92	NM_013390	exon6	c.G1243T	p.G415X	TCACTCCATCTAC	.	76	20	55	0	.	0	0	0	0	0
GDA	9615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74810477	74810477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDA-230	NM_004293	exon2	c.C185A	p.P62Q	TCAAGCCGTGTGA	.	48	14	35	0	.	0	0	0	0	0
RORB	6096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	77249546	77249546	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RORB-229	NM_006914	exon3	c.94-1G>-	.	CCTCAAGGGATTC	.	45	15	45	0	.	0	0	0	0	0
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77423024	77423024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_017662	exon14	c.G1564T	p.G522C	CTCTACCAATGAG	.	155	46	139	0	.	0	0	0	0	0
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77431651	77431651	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_017662	exon11	c.G1242T	p.L414L	CATTGCCAGATTT	.	50	14	45	0	.	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320603	79320603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRUNE2-157	NM_015225	exon8	c.A6587T	p.N2196I	TCACCGTTTATTT	.	155	56	141	0	.	0	0	0	0	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82321726	82321726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLE4-524	NM_007005	exon11	c.G848T	p.R283L	AGACACGCCTGCT	.	90	30	108	0	.	0	0	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84607383	84607383	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.C1998A	p.V666V	CAAGGTCCATGTT	.	227	78	201	0	.	0	0	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84607770	84607770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.G2385T	p.K795N	AGACAAGGATCTG	.	571	178	505	0	.	0	0	0	0	0
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608003	84608003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.A2618T	p.H873L	TTAAACATCGAAA	.	553	150	541	2	.	0	0	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84608098	84608098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.G2713T	p.A905S	TTGGAAGCCCATA	.	160	65	172	0	.	0	0	0	0	0
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88162051	88162051	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGTPBP1-158	NM_015239	exon26	c.T3534A	p.S1178S	TAATTCAGAGTCA	.	130	45	141	0	.	0	0	0	0	0
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90318057	90318057	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAPK1-359	NM_004938	exon25	c.G2985T	p.V995V	CGACGTGCAGGAC	.	192	69	171	0	.	0	0	0	0	0
SYK	6850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	93637019	93637019	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYK-1402	NM_003177	exon9	c.G1069C	p.E357Q	CCCGAGGAGATCA	.	108	52	128	0	.	0	0	0	0	0
NOL8	55035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95076909	95076909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOL8-23	NM_017948	exon7	c.G1998C	p.K666N	ACTTCTCTTTTCA	.	166	47	142	2	.	0	0	0	0	0
NOL8	55035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95077071	95077071	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOL8-23	NM_017948	exon7	c.C1836T	p.S612S	TTCCATGGATATG	.	52	25	59	0	.	0	0	0	0	0
ECM2	1842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95263198	95263198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECM2-131	NM_001393	exon9	c.C1742A	p.P581Q	AGGCCTGGTTCCA	.	215	58	231	0	.	0	0	0	0	0
ECM2	1842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95263199	95263199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECM2-131	NM_001393	exon9	c.C1741A	p.P581T	GGCCTGGTTCCAT	.	219	60	227	1	.	0	0	0	0	0
FAM22G	441457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	99694487	99694487	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM22G-69	NM_001045477	exon2	c.500delC	p.A167fs	AGGTGGCCCCCAT	.	713	165	392	0	.	0	0	0	0	0
CCDC180	0	broad.mit.edu;bcgsc.ca	37	9	100122323	100122323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020893	exon26	c.G3555T	p.Q1185H	GAGCCAGAGGATT	.	258	90	220	1	.	0	0	0	0	0
HEMGN	55363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100693484	100693484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEMGN-91	NM_197978	exon3	c.C193A	p.Q65K	TCTGCTGCTTGCG	.	27	6	18	0	.	0	0	0	0	0
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101749611	101749611	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL15A1-96	NM_001855	exon4	c.C684A	p.P228P	CGACCCCAGGACT	.	80	30	62	0	.	0	0	0	0	0
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101765834	101765834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL15A1-96	NM_001855	exon8	c.A1165G	p.M389V	CTCTCTATGTCCA	.	266	91	260	1	.	0	0	0	0	0
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104390541	104390541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon4	c.T2495A	p.L832Q	CACTTCAGATACT	.	42	4	39	0	.	0	0	0	0	0
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104432880	104432880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon3	c.A1814T	p.Y605F	GCTCCATACTTTC	.	108	33	138	0	.	0	0	0	0	0
GRIN3A	116443	broad.mit.edu;mdanderson.org	37	9	104499917	104499917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon1	c.G345T	p.E115D	GGCGCCCTCCCCG	.	47	15	29	0	.	0	0	0	0	0
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107331611	107331611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR13C8-70	NM_001004483	exon1	c.C163A	p.L55M	TCTCACCTGCACA	.	96	30	97	0	.	0	0	0	0	0
ZNF462	58499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	109746465	109746465	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF462-95	NM_021224	exon10	c.6833-2A>T	.	TTCCACAGAAGAG	.	99	33	71	1	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113169869	113169869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon38	c.C8011A	p.H2671N	ATGAATGTGTAGC	.	116	35	96	0	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113265477	113265477	+	Missense_Mutation	SNP	G	G	T	rs200840190	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon6	c.C1324A	p.R442S	GCTGGCGGAGATG	.	251	85	209	0	G|0.999;A|0.001	0	0	0	0	0
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113547978	113547978	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUSK-1379	NM_005592	exon12	c.T1758A	p.F586L	AGCGTTTGGAAGG	.	141	68	110	0	.	0	0	0	0	0
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115969505	115969505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FKBP15-25	NM_015258	exon3	c.C241T	p.H81Y	ATGCATGGACTGC	.	191	83	136	0	.	0	0	0	0	0
ALAD	210	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116151361	116151361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALAD-90	NM_000031	exon11	c.A827T	p.Y276F	ACGTGGTACACGG	.	257	102	231	2	.	0	0	0	0	0
C9orf43	257169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116176080	116176080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C9orf43-90	NM_152786	exon3	c.G193A	p.G65S	GATTCCGGCTTTG	.	95	33	113	2	.	0	0	0	0	0
COL27A1	85301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117070019	117070019	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL27A1-94	NM_032888	exon59	c.T5178C	p.H1726H	CACTCATGGTGGA	.	259	85	191	1	.	0	0	0	0	0
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117143414	117143414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKNA-94	NM_030767	exon2	c.C200T	p.P67L	AGGGGCGGCAGGT	.	114	51	64	0	.	0	0	0	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118949703	118949703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon2	c.G686C	p.S229T	TATTCAGCCCACT	.	93	12	86	0	.	0	0	0	0	0
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118997834	118997834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon7	c.C2650G	p.L884V	AAGCCCCTGAAGT	.	142	43	137	1	.	0	0	0	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119097159	119097159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon13	c.C3417A	p.C1139X	GAGCTGCAGGAAC	.	129	27	106	0	.	0	0	0	0	0
ASTN2	23245	ucsc.edu;bcgsc.ca	37	9	120053671	120053671	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN2-161	NM_014010	exon2	c.C564G	p.A188A	AGTGGGGGCGGTG	.	259	94	224	3	.	0	0	0	0	0
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475502	120475502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLR4-577	NM_138554	exon3	c.G1096C	p.A366P	GGGAATGCTTTTT	.	128	35	137	0	.	0	0	0	0	0
CNTRL	11064	broad.mit.edu;bcgsc.ca	37	9	123888004	123888004	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTRL-661	NM_007018	exon12	c.A1815G	p.A605A	GATAGCAGCAAAT	.	100	31	70	2	.	0	0	0	0	0
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124936842	124936842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORN5-90	NM_198469	exon4	c.C375A	p.D125E	TGGAGACGGCTTC	.	106	46	124	0	.	0	0	0	0	0
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124971944	124971944	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX6-90	NM_014368	exon9	c.C1107A	p.P369P	GTGGACGGGGGGT	.	201	91	159	0	.	0	0	0	0	0
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125154577	125154577	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGS1-228	NM_000962	exon11	c.G1554T	p.G518G	CTTTGGGGAGAGT	.	178	67	129	0	.	0	0	0	0	0
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125562551	125562551	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1K1-69	NM_080859	exon1	c.C150A	p.I50I	TGCCATCCAGGCC	.	255	102	161	0	.	0	0	0	0	0
ZBTB26	57684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125681181	125681181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB26-90	NM_020924	exon2	c.C1033T	p.L345F	GGTTAAGATGATC	.	76	24	95	0	.	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	8	7	0	0	C|0.875;T|0.125	0	0	0	0	0
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127549290	127549290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2A-68	NM_182487	exon2	c.G127T	p.E43X	ACCTCGGAGGGCT	.	48	18	28	0	.	0	0	0	0	0
GOLGA1	2800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127670717	127670717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOLGA1-91	NM_002077	exon12	c.G1004A	p.R335K	TGTTGTCTGGTAT	.	96	34	78	0	.	0	0	0	0	0
SH2D3C	10044	broad.mit.edu;bcgsc.ca	37	9	130501188	130501188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2D3C-228	NM_170600	exon12	c.G2420T	p.R807L	TCCGGCCGGGCCT	.	122	49	100	2	.	0	0	0	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131395498	131395498	+	Missense_Mutation	SNP	G	G	A	rs141980692	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTAN1-158	NM_001130438	exon57	c.G7319A	p.R2440Q	TGACCCGGGAACA	.	97	21	77	0	G|0.999;A|0.001	0	0	0	0	0
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131513410	131513410	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZER1-91	NM_006336	exon7	c.G1176T	p.R392R	CAGGGCCCGCAGC	.	150	50	85	0	.	0	0	0	0	0
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133342123	133342123	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASS1-91	NM_054012	exon6	c.C432T	p.P144P	TGCTCCCTGGAGG	.	130	44	100	0	.	0	0	0	0	0
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135140278	135140278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon26	c.A7382T	p.K2461M	AGAATCTTCACTG	.	124	57	103	0	.	0	0	0	0	0
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135210060	135210060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon7	c.T773G	p.L258W	GAGCCCAACAACA	.	154	25	129	0	.	0	0	0	0	0
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135505693	135505693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX31-226	NM_022779	exon16	c.C1904T	p.S635L	GCCTCCGAAGGAG	.	84	14	74	0	.	0	0	0	0	0
GTF3C4	9329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135554353	135554353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GTF3C4-91	NM_012204	exon2	c.G1347T	p.Q449H	GAGGCAGCTGATT	.	216	77	165	1	.	0	0	0	0	0
TSC1	7248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135781060	135781060	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSC1-1906	NM_000368	exon15	c.A1905T	p.T635T	TTCCTCTGTGTTT	.	209	69	170	1	.	0	0	0	0	0
GBGT1	26301	bcgsc.ca	37	9	136029495	136029495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GBGT1-90	NM_021996	exon7	c.G513T	p.Q171H	GTGACCCTGGATG	.	124	41	95	2	.	0	0	0	0	0
ADAMTS13	11093	hgsc.bcm.edu;bcgsc.ca	37	9	136324173	136324173	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS13-229	NM_139025	exon29	c.4155delG	p.Q1385fs	CAGCCAGGCTGAG	.	226	81	174	1	.	0	0	0	0	0
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137658845	137658845	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A1-524	NM_000093	exon23	c.2134-1G>T	.	CCTGTAGGGTCCC	.	161	54	130	0	.	0	0	0	0	0
SOHLH1	402381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138585537	138585537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOHLH1-135	NM_001101677	exon8	c.G1070A	p.S357N	AGAGGGCTGTCCT	.	250	83	195	0	.	0	0	0	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138660771	138660771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNT1-137	NM_020822	exon15	c.G1498T	p.V500F	TTTCACGTCAAGT	.	65	15	43	0	.	0	0	0	0	0
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139341310	139341310	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014866	exon28	c.C6789T	p.P2263P	CACCTTGGGCTCT	.	80	33	73	1	.	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139391450	139391450	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH1-5459	NM_017617	exon34	c.G6741C	p.L2247L	CACGTTCAGGTGC	.	171	44	14	0	.	0	0	0	0	0
LCN6	158062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139639178	139639178	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCN6-90	NM_198946	exon5	c.C428G	p.A143G	TGGCTGGCTGTCT	.	134	53	120	0	.	0	0	0	0	0
SLC34A3	142680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140126591	140126591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC34A3-90	NM_001177317	exon3	c.G153T	p.K51N	GCTGAAGGACACA	.	165	64	143	0	.	0	0	0	0	0
NOXA1	10811	hgsc.bcm.edu	37	9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	rs112864733		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	17	11	0	0	C|0.934;G|0.066	0	0	0	0	0
EHMT1	79813	broad.mit.edu;bcgsc.ca	37	9	140671292	140671292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EHMT1-154	NM_001145527	exon12	c.G2014T	p.G672C	ACAACGGGCAGGT	.	98	34	79	2	.	0	0	0	0	0
PPP2R3B	28227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	322316	322316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP2R3B-136	NM_013239	exon2	c.C334T	p.R112W	CTTTCCGTGTCTG	.	278	154	312	1	.	0	0	0	0	0
ASMTL	8623	hgsc.bcm.edu	37	X	1571720	1571720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASMTL-62	NM_001173474	exon1	c.C14T	p.P5L	ATCACCGGGCACA	.	48	28	6	0	.	0	0	0	0	0
CD99	4267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2637737	2637737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD99-40	NM_002414	exon4	c.G184T	p.G62X	GTTGATGGAGAAA	.	413	222	537	2	.	0	0	0	0	0
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3229122	3229122	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon7	c.C7122T	p.P2374P	GGGCATGGGTTCT	.	157	74	192	1	.	0	0	0	0	0
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241638	3241638	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon5	c.G2088C	p.V696V	ATCCTCCACGATG	.	73	45	91	0	.	0	0	0	0	0
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248114	3248114	+	Silent	SNP	C	C	A	rs200950732	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon4	c.G654T	p.P218P	GGTCCACGGATTT	.	76	38	132	0	.	0	0	0	0	0
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8763196	8763196	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9A-130	NM_174951	exon7	c.G754T	p.G252X	CTCCTCCTTCTTC	.	48	32	59	0	.	0	0	0	0	0
AMELX	265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	11316882	11316882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMELX-130	NM_182680	exon6	c.C401T	p.P134L	ACCTCCCTCCGCC	.	162	77	153	0	.	0	0	0	0	0
ARHGAP6	395	hgsc.bcm.edu	37	X	11682852	11682852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP6-227	NM_006125	exon1	c.C97A	p.R33S	TCTGGCGCAGCTT	.	44	13	32	0	.	0	0	0	0	0
FAM9C	171484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13056583	13056583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9C-130	NM_174901	exon7	c.G478A	p.G160R	CTTTCCCATCTTG	.	17	8	35	0	.	0	0	0	0	0
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15841143	15841143	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZRSR2-133	NM_005089	exon11	c.A1227G	p.K409K	TCACAAACGCACA	.	214	125	210	1	.	0	0	0	0	0
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16168476	16168476	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRPR-565	NM_005314	exon2	c.G462A	p.L154L	TGCCCTGATGAAG	.	107	60	164	0	.	0	0	0	0	0
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18911675	18911675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon33	c.G3636T	p.M1212I	GTAGGTCATCGTC	.	231	103	155	0	.	0	0	0	0	0
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18942242	18942242	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon17	c.C1725T	p.G575G	GTCTGAGCCATCA	.	352	133	286	1	.	0	0	0	0	0
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19046318	19046318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR64-130	NM_001184834	exon10	c.G397T	p.E133X	TGCTTTCTTTATC	.	147	46	153	0	.	0	0	0	0	0
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	24383063	24383063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136234	exon1	c.C2186A	p.A729E	GTTCCGCACTAGG	.	320	170	475	2	.	0	0	0	0	0
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24383065	24383065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136234	exon1	c.C2188A	p.L730I	TCCGCACTAGGTT	.	320	171	479	1	.	0	0	0	0	0
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26212653	26212653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G690T	p.K230N	GTACAAGCCCTAC	.	126	66	208	0	.	0	0	0	0	0
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	26212780	26212780	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G817T	p.E273X	CCCAGTGAAGGAA	.	123	64	167	0	.	0	0	0	0	0
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27998833	27998833	+	Missense_Mutation	SNP	G	G	T	rs148833488	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF8L1-112	NM_001017930	exon1	c.C619A	p.R207S	TGCCACGCTGGTT	.	184	93	238	0	G|1.000;A|0.000	0	0	0	0	0
MAGEB1	4112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30268640	30268640	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB1-130	NM_177415	exon3	c.T30A	p.R10R	GCTCCGTGCTCGT	.	271	143	377	0	.	0	0	0	0	0
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	30849617	30849617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAB3-131	NM_152787	exon11	c.G2066T	p.C689F	CTATCACAATTCC	.	164	32	164	0	.	0	0	0	0	0
FTHL17	53940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31090008	31090008	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FTHL17-130	NM_031894	exon1	c.C63G	p.I21M	GCTGTTGATGGCG	.	566	131	305	0	.	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31222119	31222119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon67	c.G9766A	p.G3256S	TACTGCCCCCAAA	.	220	50	234	0	.	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	31514988	31514988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon57	c.C8464A	p.Q2822K	TCAGCTGTAGCCA	.	199	93	219	1	.	0	0	0	0	0
FAM47B	170062	ucsc.edu;bcgsc.ca	37	X	34960969	34960969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47B-196	NM_152631	exon1	c.G21T	p.Q7H	GCCACAGGACCGG	.	271	162	368	4	.	0	0	0	0	0
FAM47B	170062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34961915	34961915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47B-196	NM_152631	exon1	c.C967A	p.P323T	CCGGAGCCTCCCG	.	80	43	120	1	.	0	0	0	0	0
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35971805	35971805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf22-131	NM_152632	exon7	c.T1143G	p.F381L	TGGATTTTTGAGA	.	163	36	247	0	.	0	0	0	0	0
CXorf30	645090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	36319291	36319291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf30-62	NM_001098843	exon8	c.G305T	p.G102V	ACCTTGGCAAGTA	.	172	96	237	2	.	0	0	0	0	0
FAM47C	442444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37027035	37027035	+	Silent	SNP	G	G	T	rs61730915	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47C-111	NM_001013736	exon1	c.G552T	p.G184G	CTGTGGGGAATTC	.	71	49	93	0	G|0.992;A|0.008	0	0	0	0	0
FAM47C	442444	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37028109	37028109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47C-111	NM_001013736	exon1	c.C1626A	p.S542R	GAGTAGCGTATCT	.	92	41	117	1	.	0	0	0	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41025466	41025466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP9X-563	NM_001039591	exon16	c.G2327C	p.R776T	TTTGGAGGGTAAG	.	48	30	48	0	.	0	0	0	0	0
CHST7	56548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46433693	46433693	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHST7-133	NM_019886	exon1	c.C327A	p.T109T	TGCCACCTGGCGC	.	185	39	138	2	.	0	0	0	0	0
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46541866	46541866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A7-132	NM_001257291	exon2	c.G430T	p.V144L	CATTCACTAATAA	.	133	22	152	0	.	0	0	0	0	0
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47002022	47002022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.C329A	p.P110H	TAGTCAGGCAGAT	.	202	48	221	0	.	0	0	0	0	0
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47002127	47002127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.G224T	p.G75V	TCATAACCATGGG	.	253	48	322	0	.	0	0	0	0	0
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47032530	47032530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBM10-626	NM_001204468	exon5	c.C631A	p.R211S	TAGATCCGTGGCC	.	137	25	121	1	.	0	0	0	0	0
ZNF81	347344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47705685	47705685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF81-130	NM_007137	exon2	c.G19T	p.A7S	GAGGACGCTCCCC	.	89	24	82	0	.	0	0	0	0	0
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47919260	47919260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF630-131	NM_001037735	exon5	c.T571A	p.L191I	TTAGTAAGTCTGA	.	34	10	43	0	.	0	0	0	0	0
SLC38A5	92745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48319044	48319044	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC38A5-133	NM_033518	exon14	c.G1059T	p.V353V	GAACAGCACGACT	.	172	37	152	1	.	0	0	0	0	0
WAS	7454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48547809	48547809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WAS-563	NM_000377	exon11	c.C1439T	p.A480V	GCAGAGCCATCCA	.	342	75	360	0	.	0	0	0	0	0
HDAC6	10013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48676461	48676461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC6-230	NM_006044	exon21	c.G1939T	p.D647Y	ATTGTGGATTGGG	.	286	51	271	1	.	0	0	0	0	0
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48678641	48678641	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC6-230	NM_006044	exon23	c.C2316A	p.G772G	CAGTGGCCGCATT	.	80	15	77	0	.	0	0	0	0	0
OTUD5	55593	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48814313	48814313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD5-541	NM_001136157	exon1	c.G520T	p.G174C	TGTAGCCTGCGCC	.	148	31	86	1	.	0	0	0	0	0
KCND1	3750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48822694	48822694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCND1-133	NM_004979	exon5	c.G1486C	p.E496Q	TGAGCTCATCTGT	.	418	76	385	1	.	0	0	0	0	0
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48832699	48832699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIPAP1-227	NM_020137	exon23	c.A2138T	p.Q713L	AGCCGCTGAAAGA	.	228	46	222	1	.	0	0	0	0	0
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48853737	48853737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIPAP1-227	NM_020137	exon5	c.G231C	p.M77I	CTGCAGCATCTCA	.	51	13	36	0	.	0	0	0	0	0
PRAF2	11230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48929617	48929617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAF2-130	NM_007213	exon3	c.G448C	p.E150Q	TGTTCTCAATCTT	.	73	19	66	0	.	0	0	0	0	0
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48935536	48935536	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR45-131	NM_007075	exon4	c.C90T	p.R30R	GTAGATGCGCACA	.	91	19	93	0	.	0	0	0	0	0
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49074374	49074374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1F-176	NM_005183	exon25	c.G3052A	p.G1018R	GCACCCCGATGCA	.	152	46	155	0	.	0	0	0	0	0
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49142338	49142338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R3F-229	NM_033215	exon4	c.G1186T	p.D396Y	GAAGGTGATGTCC	.	329	49	260	0	.	0	0	0	0	0
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49851057	49851057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLCN5-132	NM_001127898	exon11	c.C1087T	p.R363C	ACTCTACGCTCCA	.	117	30	100	0	.	0	0	0	0	0
AKAP4	8852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49957836	49957836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP4-540	NM_003886	exon5	c.C1528A	p.Q510K	GCTTTTGGTTCCA	.	111	23	96	1	.	0	0	0	0	0
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	50054083	50054083	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNB3-482	NM_033031	exon5	c.2914delG	p.G972fs	CAAGTTGGAACCA	.	186	50	204	0	.	0	0	0	0	0
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50121627	50121627	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKK-227	.	.	.	.	CATCTGCACAGAA	.	166	71	161	1	.	0	0	0	0	0
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	50377365	50377365	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.C1708A	p.R570R	CACTTCGCCTACC	.	65	16	87	0	.	0	0	0	0	0
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50377405	50377405	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.G1668C	p.G556G	GCTGTCCCCTTCT	.	97	21	138	0	.	0	0	0	0	0
NUDT10	170685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51075872	51075872	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUDT10-90	NM_153183	exon2	c.C55A	p.R19R	AAGAAGCGGGCGG	.	759	121	541	1	.	0	0	0	0	0
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51487049	51487049	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSPT2-228	NM_018094	exon1	c.T327A	p.P109P	GGCACCTGTGGAA	.	67	12	28	0	.	0	0	0	0	0
MAGED1	9500	hgsc.bcm.edu;bcgsc.ca	37	X	51639728	51639728	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGED1-133	NM_001005333	exon5	c.1145delG	p.R382fs	CAGCTAGGCAGAC	.	283	106	349	2	.	0	0	0	0	0
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53105990	53105990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR173-130	NM_018969	exon2	c.G187T	p.D63Y	CTGCTGGACCTGT	.	121	26	145	0	.	0	0	0	0	0
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53278002	53278002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon6	c.G2360T	p.G787V	GCCACTCCCACCG	.	94	42	76	0	.	0	0	0	0	0
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279726	53279726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.G2032T	p.G678C	TCCGACCCCCAGC	.	68	18	57	0	.	0	0	0	0	0
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53279966	53279966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.C1792G	p.P598A	TAGGAGGCTCAAT	.	115	27	106	0	.	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53561133	53561133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon83	c.G12857A	p.R4286H	AAAGAACGCAATG	.	414	97	434	0	.	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53602737	53602737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon45	c.G5896T	p.D1966Y	TAGGATCAGATTT	.	146	26	178	0	.	0	0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53634661	53634661	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon26	c.2320-1G>T	.	TTTCATCTAGGTA	.	45	4	56	0	.	0	0	0	0	0
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54228531	54228531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon23	c.G4966T	p.D1656Y	TCCAGTCATCCAC	.	105	26	127	0	.	0	0	0	0	0
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54263789	54263789	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon20	c.G4210C	p.E1404Q	AGGTTTCCTGAAG	.	63	6	81	0	.	0	0	0	0	0
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon20	c.C4100A	p.S1367Y	TCACTAGAATGGT	.	15	5	21	0	.	0	0	0	0	0
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54586952	54586952	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNL3L-131	NM_019067	exon16	c.1667-1G>C	.	TTTGCAGATAAAA	.	106	20	79	0	.	0	0	0	0	0
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54800536	54800536	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198510	exon6	c.T881G	p.M294R	CCAAACATGGAGC	.	442	81	446	0	.	0	0	0	0	0
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54817377	54817377	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198510	exon4	c.T509A	p.L170X	TTCACCAATTGGC	.	223	45	217	0	.	0	0	0	0	0
KLF8	11279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	56259773	56259773	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLF8-131	NM_001159296	exon2	c.C6A	p.V2V	CATGGTCGGTAAG	.	104	21	140	1	.	0	0	0	0	0
SPIN3	169981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57020873	57020873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN3-131	NM_001010862	exon2	c.C508A	p.P170T	ATACAGGATCTTT	.	173	31	190	1	.	0	0	0	0	0
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57146348	57146348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006683	exon2	c.T715A	p.Y239N	TGAAATACACAGA	.	824	160	973	0	.	0	0	0	0	0
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57146372	57146372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006683	exon2	c.C691A	p.Q231K	CCACTTGGTGAAT	.	771	141	956	0	.	0	0	0	0	0
SPIN2A	54466	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	57162366	57162366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2A-130	NM_019003	exon2	c.C665G	p.S222C	CTTTTGGAGCCAT	.	734	148	824	1	.	0	0	0	0	0
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	65412128	65412128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEPH-135	NM_138737	exon7	c.G1382T	p.R461I	ATTTGAGAGAGCC	.	209	110	345	1	.	0	0	0	0	0
FAM155B	27112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	68748874	68748874	+	Missense_Mutation	SNP	C	C	G	rs200565192	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM155B-131	NM_015686	exon2	c.C900G	p.S300R	CTTCAGCGTGACC	.	135	80	204	0	C|0.999;T|0.001	0	0	0	0	0
OTUD6A	139562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69282886	69282886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD6A-541	NM_207320	exon1	c.G512T	p.R171L	TGCTGCGCTGCCG	.	269	154	318	0	.	0	0	0	0	0
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69646560	69646560	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDPD2-132	NM_017711	exon7	c.G525A	p.V175V	GCCTGTGGCTGAT	.	217	137	268	0	.	0	0	0	0	0
TAF1	6872	hgsc.bcm.edu;bcgsc.ca	37	X	70683717	70683717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF1-900	NM_004606	exon38	c.5503delG	p.D1835fs	ACCCAAGACACAA	.	337	188	480	2	.	0	0	0	0	0
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70776864	70776864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGT-113	NM_181672	exon10	c.A1229T	p.D410V	TGCAGGATGTTCA	.	207	91	320	0	.	0	0	0	0	0
CXCR3	2833	broad.mit.edu	37	X	70837423	70837423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXCR3-660	NM_001142797	exon2	c.A40G	p.T14A	TAACTGTCCCCGC	.	139	37	183	43	.	0	0	0	0	0
NHSL2	340527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71354404	71354404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NHSL2-108	NM_001013627	exon4	c.G610A	p.V204M	CAGGGTGTGAGGG	.	250	140	343	0	.	0	0	0	0	0
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	77912640	77912640	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC5-131	NM_152694	exon2	c.C1278A	p.I426I	GCAGTTGATTGCA	.	157	96	200	0	.	0	0	0	0	0
TBX22	50945	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79278676	79278676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX22-628	NM_016954	exon2	c.G293T	p.G98V	TTCAAGGATCTGA	.	190	102	286	2	.	0	0	0	0	0
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79971694	79971694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRWD3-134	NM_153252	exon20	c.G2287T	p.V763F	TTTCAACTGTATA	.	59	20	79	0	.	0	0	0	0	0
SATL1	340562	ucsc.edu;bcgsc.ca	37	X	84362970	84362970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SATL1-175	NM_001012980	exon1	c.C1005A	p.S335R	GCTCAGGCTTTGT	.	227	124	350	3	.	0	0	0	0	0
DACH2	117154	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	85404068	85404068	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH2-136	NM_001139514	exon1	c.C444T	p.T148T	CATCACCAGGAAA	.	81	40	116	1	.	0	0	0	0	0
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	86890618	86890618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL4-133	NM_019117	exon9	c.T1768A	p.F590I	GAATACTTTGACC	.	99	26	174	0	.	0	0	0	0	0
PCDH11X	27328	hgsc.bcm.edu;bcgsc.ca	37	X	91132646	91132646	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.T1407A	p.S469S	CCAGTCTTTCGTA	.	283	165	448	2	.	0	0	0	0	0
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	91133492	91133492	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.C2253G	p.V751V	GTTGGTCAAAGCT	.	519	292	782	0	.	0	0	0	0	0
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91133563	91133563	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.C2324A	p.S775X	ATGAGTCGGTGAC	.	526	312	785	2	.	0	0	0	0	0
PCDH11X	27328	ucsc.edu	37	X	91873458	91873458	+	Missense_Mutation	SNP	G	G	C	rs2556894	bycluster	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon7	c.G3563C	p.R1188P	GCCCACGAGTGAC	.	751	121	795	2	.	0	0	0	0	0
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873488	91873488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon7	c.G3593T	p.S1198I	GCCACAGCCCTCC	.	812	136	855	1	.	0	0	0	0	0
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	96724708	96724708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIAPH2-133	NM_007309	exon27	c.G3257T	p.C1086F	ATCCCTGTGCAAC	.	286	44	371	0	.	0	0	0	0	0
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99661493	99661493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH19-110	NM_001184880	exon1	c.C2103G	p.I701M	GCACTTGATTGCC	.	142	54	156	0	.	0	0	0	0	0
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	99854700	99854700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNMD-130	NM_022144	exon7	c.C940A	p.L314M	CGCATGCTGGGGA	.	84	15	80	0	.	0	0	0	0	0
TSPAN6	7105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99890216	99890216	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSPAN6-131	NM_003270	exon3	c.G310T	p.E104X	CCAGTTCGACCAA	.	175	37	187	0	.	0	0	0	0	0
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100093269	100093269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSTF2-131	NM_001325	exon13	c.G1653T	p.Q551H	AGACCAGATTGCC	.	195	33	218	0	.	0	0	0	0	0
ARL13A	392509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100243238	100243238	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL13A-131	NM_001162490	exon7	c.C710A	p.S237X	AATGCTCAATCGA	.	490	132	454	3	.	0	0	0	0	0
DRP2	1821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100509496	100509496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DRP2-132	NM_001939	exon18	c.C2060A	p.P687H	AACACCCTCAGCG	.	491	109	568	2	.	0	0	0	0	0
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100615077	100615077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTK-1395	NM_000061	exon9	c.G838T	p.E280X	CTTACTCATACAT	.	69	11	69	0	.	0	0	0	0	0
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100880257	100880257	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMCX3-131	NM_016607	exon5	c.C288A	p.A96A	AAGGGCCAGGGCT	.	93	23	127	0	.	0	0	0	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911671	100911671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMCX2-136	NM_014782	exon5	c.G904T	p.V302F	CTTCAACTTTGCT	.	92	14	87	2	.	0	0	0	0	0
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101096062	101096062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NXF5-204	NM_032946	exon8	c.G406T	p.D136Y	CAATGTCACGGCC	.	433	147	502	1	.	0	0	0	0	0
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101409039	101409039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX5-86	NM_001012978	exon3	c.G199A	p.D67N	CCATATCATCTCC	.	167	34	201	0	.	0	0	0	0	0
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909810	101909810	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP1-131	NM_001099411	exon3	c.T969A	p.A323A	GAGAGCTGGGAAG	.	46	25	70	0	.	0	0	0	0	0
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101970728	101970728	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP2-131	NM_138437	exon4	c.G931T	p.E311X	AGGGAGGAGGCAA	.	153	41	139	0	.	0	0	0	0	0
BEX1	55859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102317893	102317893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX1-109	NM_018476	exon3	c.A310G	p.S104G	GCAGACTATGACT	.	290	62	252	1	.	0	0	0	0	0
NXF3	56000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102334159	102334159	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NXF3-205	NM_022052	exon16	c.G1368T	p.V456V	CTTGAACACCCCG	.	432	194	481	2	.	0	0	0	0	0
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102471392	102471392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX4-62	NM_001080425	exon3	c.G311T	p.R104L	ATATGCGCTTCCA	.	323	118	309	2	.	0	0	0	0	0
RAB40A	142684	bcgsc.ca	37	X	102755188	102755188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAB40A-227	NM_080879	exon3	c.C497A	p.S166Y	GTGAAAGACTCTA	.	307	94	281	3	.	0	0	0	0	0
TCEAL1	9338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102884854	102884854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCEAL1-131	NM_001006639	exon3	c.C10A	p.P4T	GACAAACCACGCA	.	71	18	66	1	.	0	0	0	0	0
H2BFM	286436	bcgsc.ca	37	X	103294687	103294687	+	Missense_Mutation	SNP	C	C	A	rs200102787	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	H2BFM-109	NM_001164416	exon1	c.C144A	p.H48Q	GCGCCACGCCAAC	.	405	133	302	2	.	0	0	0	0	0
SLC25A53	401612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103349892	103349892	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001012755	exon2	c.C49A	p.R17R	CTGCTCGCGTCCT	.	209	69	208	0	.	0	0	0	0	0
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104464179	104464179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon5	c.G697T	p.A233S	TGGAGGCAGCCCT	.	48	14	47	0	.	0	0	0	0	0
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104465051	104465051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon2	c.G31T	p.G11W	GGAACCCGCTACT	.	90	33	71	0	.	0	0	0	0	0
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011209	105011209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL1RAPL2-194	NM_017416	exon11	c.C1616A	p.S539Y	AGGGATCCAAAAG	.	162	62	190	0	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	105132287	105132287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon5	c.G253T	p.D85Y	CCATAGGATGAGG	.	393	145	405	1	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105153825	105153825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon13	c.G2192T	p.W731L	GCAGATGGGAAGA	.	273	68	295	0	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105178368	105178368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon20	c.C3431G	p.S1144C	ATTTTTCTGCCAA	.	320	92	298	0	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105187993	105187993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon24	c.C4019A	p.A1340E	TTTATGCATGGGC	.	364	115	304	0	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105197070	105197070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon28	c.A4558G	p.I1520V	AAGGCCATTGAAG	.	299	130	239	0	.	0	0	0	0	0
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105279361	105279361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA7-226	NM_000354	exon3	c.C638T	p.P213L	TCAAAAGGATTTG	.	115	34	140	0	.	0	0	0	0	0
TBC1D8B	54885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106083404	106083404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8B-133	NM_198881	exon9	c.G1480T	p.G494X	TTAAGAGGAGAAC	.	392	131	394	0	.	0	0	0	0	0
CLDN2	9075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	106172103	106172103	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLDN2-131	NM_001171092	exon2	c.C645A	p.P215P	ACCTCCCAAAGTC	.	130	40	104	1	.	0	0	0	0	0
MORC4	79710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106185911	106185911	+	Missense_Mutation	SNP	G	G	T	rs150736453	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC4-131	NM_001085354	exon15	c.C2210A	p.S737Y	GCAGCAGAGGCCA	.	184	71	130	2	G|1.000;A|0.000	0	0	0	0	0
MORC4	79710	bcgsc.ca	37	X	106242923	106242923	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC4-131	NM_001085354	exon2	c.C159A	p.A53A	CGCGATGGCACTG	.	166	72	42	1	.	0	0	0	0	0
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107420097	107420097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A6-199	NM_001847	exon28	c.G2663T	p.G888V	GGCAACCCAGCGA	.	166	60	123	0	.	0	0	0	0	0
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	107911571	107911571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A5-133	NM_000495	exon41	c.A3627T	p.L1209F	AGGATTACCTGGG	.	294	78	274	2	.	0	0	0	0	0
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107976957	107976957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRS4-623	NM_003604	exon1	c.C2618T	p.P873L	TTTGAAGGTGATC	.	117	35	137	0	.	0	0	0	0	0
GUCY2F	2986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	108708517	108708517	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GUCY2F-540	NM_001522	exon3	c.C886A	p.R296R	GGACCCGGTAGGG	.	234	84	212	1	.	0	0	0	0	0
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109507776	109507776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMMECR1-130	NM_015365	exon2	c.C525G	p.C175W	ACCTATGCATCCA	.	375	105	334	0	.	0	0	0	0	0
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109696335	109696335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGAG1-132	NM_020769	exon3	c.G2490C	p.M830I	TGGAATGATGTCA	.	187	60	175	0	.	0	0	0	0	0
RGAG1	57529	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109696663	109696663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGAG1-132	NM_020769	exon3	c.C2818A	p.Q940K	ACTGCACAAACAA	.	153	48	157	3	.	0	0	0	0	0
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110490730	110490730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAPN6-195	NM_014289	exon12	c.G1609T	p.V537L	GGTTTACAGCTGG	.	149	51	139	0	.	0	0	0	0	0
DCX	1641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110653544	110653544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCX-554	NM_000555	exon2	c.G326A	p.S109N	GTGGGGCTAGGCA	.	227	72	197	0	.	0	0	0	0	0
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110964940	110964940	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALG13-130	NM_001257230	exon12	c.1123+1G>T	.	GAAAAGGTAAAGA	.	125	24	126	0	.	0	0	0	0	0
TRPC5	7224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	111025191	111025191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC5-130	NM_012471	exon8	c.G2072A	p.R691Q	CTTCTCCGTCTAC	.	159	49	137	2	.	0	0	0	0	0
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698228	111698228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC16-91	NM_001004308	exon3	c.C272A	p.A91E	ATCCTGCAAATGA	.	153	36	139	1	.	0	0	0	0	0
ZCCHC16	340595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698591	111698591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC16-91	NM_001004308	exon3	c.G635C	p.C212S	CTCAGTGCATTCA	.	333	114	325	0	.	0	0	0	0	0
MIR448	554212	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114058112	114058112	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CATCTCCCAGCCC	.	73	36	75	0	.	0	0	0	0	0
RBMXL3	139804	ucsc.edu;bcgsc.ca	37	X	114424922	114424922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145346	exon1	c.C918A	p.S306R	CAAGAGCTACGGA	.	345	115	270	3	.	0	0	0	0	0
RBMXL3	139804	ucsc.edu;bcgsc.ca	37	X	114425751	114425751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145346	exon1	c.A1747C	p.N583H	CAGAGCAACCGCT	.	303	56	224	2	.	0	0	0	0	0
RBMXL3	139804	bcgsc.ca	37	X	114425772	114425772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145346	exon1	c.T1768C	p.C590R	GGAGGCTGCTACG	.	301	39	237	3	.	0	0	0	0	0
RBMXL3	139804	bcgsc.ca	37	X	114425840	114425840	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145346	exon1	c.C1836T	p.S612S	CTACAGCGGGGGC	.	358	19	263	1	.	0	0	0	0	0
LUZP4	51213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114540824	114540824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LUZP4-132	NM_016383	exon4	c.G397C	p.E133Q	CAGTCAGAGGGGA	.	302	106	258	0	.	0	0	0	0	0
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	115568956	115568956	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A14-133	NM_007231	exon2	c.49-2A>C	.	TTCCCCAGAAAGT	.	61	13	67	0	.	0	0	0	0	0
CXorf61	203413	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115593996	115593996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf61-130	NM_001017978	exon1	c.G22A	p.A8T	TGCTCGCTAGGAG	.	405	155	367	2	.	0	0	0	0	0
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117043644	117043644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168299	exon6	c.A995T	p.Q332L	TCTGACTGCATAA	.	190	71	203	0	.	0	0	0	0	0
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117043657	117043657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168299	exon6	c.C982A	p.Q328K	CTGGCTGCATATA	.	195	78	201	0	.	0	0	0	0	0
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117700598	117700598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK11-93	NM_144658	exon9	c.G933T	p.M311I	GAGCATGCATCCG	.	356	129	292	0	.	0	0	0	0	0
ZCCHC12	170261	ucsc.edu;bcgsc.ca	37	X	117959692	117959692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC12-131	NM_173798	exon4	c.C485A	p.A162E	TTCAGGCAGGCAT	.	228	86	216	2	.	0	0	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118215375	118215375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon14	c.G5047C	p.V1683L	GCTCAACTGGGTT	.	185	64	148	0	.	0	0	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118221793	118221793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.C3400A	p.Q1134K	ACAGTTGCTGGAC	.	142	34	146	0	.	0	0	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118222705	118222705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.G2488T	p.E830X	GCTCCTCCTCAGA	.	19	6	33	0	.	0	0	0	0	0
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118370647	118370647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon1	c.C321A	p.Y107X	ATTCTACGGGCCC	.	245	79	121	0	.	0	0	0	0	0
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118374361	118374361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon2	c.G418C	p.D140H	GAGTACGATGACC	.	151	43	139	0	.	0	0	0	0	0
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118723944	118723944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.G1489C	p.V497L	GAATCACTTTGCA	.	54	22	55	0	.	0	0	0	0	0
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118763333	118763333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT6-969	NM_145802	exon9	c.G1228A	p.G410S	GGGAGCCCTGGGA	.	106	17	75	0	.	0	0	0	0	0
AKAP14	158798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119048832	119048832	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP14-226	NM_178813	exon5	c.C432A	p.T144T	CAAAACCAAACCA	.	134	36	103	0	.	0	0	0	0	0
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	120009189	120009189	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145718	exon1	c.C336G	p.T112T	CCGACGGGTGGCC	.	638	230	416	1	.	0	0	0	0	0
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122532571	122532571	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA3-134	NM_000828	exon7	c.C997A	p.R333R	GTGTCCCGGAGAG	.	218	64	202	0	.	0	0	0	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122747368	122747368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon36	c.C4559T	p.S1520F	TAAGGAGATTCAC	.	27	15	20	0	.	0	0	0	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122755031	122755031	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon31	c.C4193G	p.S1398X	ATATCTGATCTGG	.	69	16	66	0	.	0	0	0	0	0
TENM1	10178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123657285	123657285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001163278	exon17	c.G2962T	p.V988L	GAAGCACAATAGG	.	192	70	189	1	.	0	0	0	0	0
TENM1	10178	ucsc.edu;bcgsc.ca	37	X	123663787	123663787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001163278	exon16	c.C2698A	p.P900T	CTAGAGGAGTTCC	.	319	108	224	2	.	0	0	0	0	0
TENM1	10178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123680874	123680874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001163278	exon15	c.G2501T	p.C834F	CCCTGGCAGAGAG	.	206	76	216	1	.	0	0	0	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123870853	123870853	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001163278	exon4	c.C730T	p.L244L	TATGCAGATGGAC	.	97	31	91	0	.	0	0	0	0	0
DCAF12L2	340578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125299535	125299535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L2-113	NM_001013628	exon1	c.G373T	p.V125L	ACTGCACGTCCAC	.	452	154	319	0	.	0	0	0	0	0
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125686226	125686226	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L1-132	NM_178470	exon1	c.G366C	p.V122V	GTCCACCACGAAA	.	629	200	431	1	.	0	0	0	0	0
CXorf64	100130613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125954967	125954967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001122716	exon2	c.G346T	p.A116S	GCACTGGCAGGCT	.	279	103	247	0	.	0	0	0	0	0
ACTRT1	139741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	127185766	127185766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTRT1-133	NM_138289	exon1	c.T420A	p.H140Q	CACCGCATGATTA	.	219	68	208	0	.	0	0	0	0	0
ACTRT1	139741	ucsc.edu;bcgsc.ca	37	X	127186027	127186027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTRT1-133	NM_138289	exon1	c.G159A	p.Q53Q	GTACTTCTGATTA	.	293	95	276	3	.	0	0	0	0	0
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128649928	128649928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA1-230	NM_139035	exon4	c.C472A	p.L158M	CAGACAGTAGCTC	.	151	63	137	0	.	0	0	0	0	0
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128888456	128888456	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPNPEP2-130	NM_003399	exon12	c.C1116T	p.D372D	GCGGGACGCTGTG	.	131	38	95	0	.	0	0	0	0	0
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128940383	128940383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDHHC9-131	NM_001008222	exon10	c.C1058A	p.P353Q	GGCTCTGGGGGCT	.	96	29	85	0	.	0	0	0	0	0
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129053172	129053172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UTP14A-132	NM_006649	exon7	c.G559A	p.E187K	GAGCAGGAAATTT	.	173	33	146	0	.	0	0	0	0	0
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129148844	129148844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon3	c.C2096A	p.P699Q	GGGACCCGAGCAC	.	229	76	188	1	.	0	0	0	0	0
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129154972	129154972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon4	c.C3454A	p.P1152T	AAGCTGCCCAGTG	.	174	66	153	1	.	0	0	0	0	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129173157	129173157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon9	c.G4518T	p.W1506C	CATCTGGCTCCTG	.	148	41	130	0	.	0	0	0	0	0
AIFM1	9131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129289211	129289211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AIFM1-586	NM_145812	exon2	c.G157T	p.G53C	AAGCACCTGTAGA	.	227	82	164	0	.	0	0	0	0	0
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129843245	129843245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX2-131	NM_182314	exon4	c.G21T	p.W7C	CCACAGCCATCTA	.	192	63	159	0	.	0	0	0	0	0
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130222738	130222738	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP36-133	NM_144967	exon12	c.C1623G	p.G541G	AACTGGCGTCAGC	.	116	37	125	0	.	0	0	0	0	0
IGSF1	3547	ucsc.edu;bcgsc.ca	37	X	130419880	130419880	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF1-133	NM_001555	exon4	c.C240A	p.I80I	AGGGCGGATCCAG	.	256	87	194	2	.	0	0	0	0	0
FRMD7	90167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	131214283	131214283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FRMD7-228	NM_194277	exon10	c.A917G	p.Q306R	TGCCTTTGGGTTC	.	205	60	185	1	.	0	0	0	0	0
RAP2C	57826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	131348263	131348263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2C-848	NM_021183	exon3	c.G485T	p.R162M	ATTTGCCTGACGA	.	447	150	417	0	.	0	0	0	0	0
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134679347	134679347	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.190-1G>T	.	TTTGCAGGCTGGT	.	138	49	117	0	.	0	0	0	0	0
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134707987	134707987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon12	c.G1630C	p.D544H	GATGAAGGTAAAA	.	208	65	242	0	.	0	0	0	0	0
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134992242	134992242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAGE1-133	NM_018666	exon15	c.G1777T	p.A593S	CAAGCAGCATCCG	.	270	90	295	0	.	0	0	0	0	0
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135098854	135098854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A6-131	NM_001042537	exon10	c.G1287T	p.M429I	CTACATGGGGCTG	.	100	40	101	0	.	0	0	0	0	0
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135112310	135112310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A6-131	NM_001042537	exon13	c.C1636A	p.Q546K	TCAGACCAAGAAC	.	181	69	150	2	.	0	0	0	0	0
FHL1	2273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135288629	135288629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FHL1-130	NM_001159701	exon2	c.C125G	p.P42R	GGGATCCCTTGCA	.	447	77	439	1	.	0	0	0	0	0
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135313958	135313958	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP7D3-110	NM_024597	exon8	c.G1158A	p.P386P	CGCCTCCGGGGAT	.	137	60	120	0	.	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135428212	135428212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon6	c.G2347C	p.V783L	ACTGTTGTTCCAT	.	250	87	286	0	.	0	0	0	0	0
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135430562	135430562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon6	c.C4697A	p.P1566Q	CAATACCAGTTAA	.	241	72	224	1	.	0	0	0	0	0
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135474475	135474475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon17	c.C7996A	p.P2666T	GCTGACCCAGTGG	.	302	80	294	1	.	0	0	0	0	0
MIR504	574507	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	137749950	137749950	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	CCAACAGCAGCTG	.	53	23	53	0	.	0	0	0	0	0
FGF13	2258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	137790993	137790993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF13-626	NM_001139500	exon4	c.G315T	p.E105D	GCTGTCCTCATCT	.	131	35	126	2	.	0	0	0	0	0
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138699719	138699719	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2-227	NM_001171876	exon11	c.C1132A	p.R378R	GTATCCGTTTTGC	.	115	35	112	0	.	0	0	0	0	0
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140993233	140993233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC1-133	NM_005462	exon4	c.C43G	p.L15V	AGTCTTCTCCAGA	.	114	29	99	0	.	0	0	0	0	0
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291129	141291129	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC2-193	NM_016249	exon3	c.C645A	p.T215T	CTCATCGGTGAGG	.	261	101	253	0	.	0	0	0	0	0
SPANXN3	139067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142605191	142605191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPANXN3-132	NM_001009609	exon1	c.G29T	p.G10V	TTCTCCCCATTGG	.	118	31	111	0	.	0	0	0	0	0
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	142717517	142717517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK4-193	NM_001184750	exon2	c.G1408A	p.D470N	TGGAGTCAAAGGT	.	165	66	168	0	.	0	0	0	0	0
UBE2NL	389898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142967266	142967266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBE2NL-226	NM_001012989	exon1	c.G64T	p.G22C	GTTCCTGGCATCA	.	211	79	212	1	.	0	0	0	0	0
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904123	144904123	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.C180A	p.P60P	GCCCCCCCAGTAT	.	185	64	188	0	.	0	0	0	0	0
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144905093	144905093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.G1150T	p.G384W	CTAACAGGGAACT	.	206	87	202	1	.	0	0	0	0	0
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905170	144905170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.C1227A	p.N409K	AAACAACAGGATT	.	257	66	242	0	.	0	0	0	0	0
MIR892B	100126307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	145078780	145078780	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TTCTGAGTAGGGC	.	491	179	456	0	.	0	0	0	0	0
MIR506	574511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	146312360	146312360	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	GTGGTGGCACTGA	.	293	87	257	0	.	0	0	0	0	0
MIR509-1	574514	hgsc.bcm.edu	37	X	146340338	146340339	+	RNA	DEL	CT	CT	-	rs36092315	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TTGCCACTGTCTG	.	795	0	605	0	-|0.063;T|0.937	0	0	0	0	0
MIR509-3	100126337	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	146341225	146341225	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	TTGCCACGTCTGC	.	1696	344	1460	2	.	0	0	0	0	0
FMR1	2332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147030346	147030346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMR1-133	NM_001185075	exon16	c.C1610A	p.S537X	ACCACTCGTGAAT	.	216	60	192	0	.	0	0	0	0	0
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148049222	148049222	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AFF2-135	NM_002025	exon15	c.G3267T	p.L1089L	TGCACTGGTAAGT	.	77	28	65	0	.	0	0	0	0	0
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148582538	148582538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDS-130	NM_006123	exon4	c.C449A	p.P150Q	CTATACGGAGAAT	.	90	26	83	0	.	0	0	0	0	0
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148797322	148797322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA11-132	NM_005366	exon4	c.C251A	p.T84N	GGATCACTGGAGG	.	227	81	206	0	.	0	0	0	0	0
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149639349	149639349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAMLD1-130	NM_005491	exon3	c.C1504A	p.Q502K	CAGCAGCAAGCAA	.	294	104	250	0	.	0	0	0	0	0
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149818249	149818249	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTM1-228	NM_000252	exon10	c.G928C	p.D310H	TTCTTAGACATTC	.	174	54	152	0	.	0	0	0	0	0
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149905230	149905230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR1-131	NM_003828	exon10	c.C1220A	p.T407K	ATGGGACGCATTG	.	148	49	170	0	.	0	0	0	0	0
GPR50	9248	ucsc.edu;bcgsc.ca	37	X	150348568	150348568	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR50-176	NM_004224	exon2	c.C513G	p.Y171X	CGAGTACGATCCT	.	274	97	251	3	.	0	0	0	0	0
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150349375	150349375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR50-176	NM_004224	exon2	c.G1320T	p.K440N	CCCTAAGCCTGCC	.	152	53	118	0	.	0	0	0	0	0
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150891194	150891194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FATE1-131	NM_033085	exon5	c.C515G	p.A172G	TGTCGGCCAGCAT	.	470	159	386	1	.	0	0	0	0	0
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150911588	150911588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G613T	p.V205F	CTGCTGGTCAAAG	.	205	65	240	1	.	0	0	0	0	0
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150911921	150911921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G946T	p.E316X	GACCCTGAGTATG	.	319	93	296	0	.	0	0	0	0	0
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150912769	150912769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G1794A	p.Q598Q	CGTGCAGGAGAAG	.	172	65	180	0	.	0	0	0	0	0
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151092271	151092271	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA4-194	NM_001011548	exon3	c.T135A	p.P45P	CTCTCCTCTGGTC	.	409	134	316	0	.	0	0	0	0	0
PNMA5	114824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152159412	152159412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA5-131	NM_001103150	exon2	c.C731G	p.S244C	AACTGAGAGGCTC	.	57	25	51	0	.	0	0	0	0	0
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152226512	152226512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.C1100T	p.P367L	CAGTACCTCTCCC	.	179	53	169	0	.	0	0	0	0	0
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152226745	152226745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.G1333C	p.E445Q	GCAGTTGAGTCGG	.	287	97	220	0	.	0	0	0	0	0
MAGEA1	4100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152482814	152482814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA1-622	NM_004988	exon3	c.C197A	p.T66N	ATGGTAGTGGGAA	.	419	100	358	0	.	0	0	0	0	0
TREX2	11219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TREX2-227	NM_080701	exon2	c.G110T	p.R37L	GAGGAGCGGTGGA	.	447	156	277	1	.	0	0	0	0	0
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152807877	152807877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP2B3-109	NM_001001344	exon4	c.C761A	p.S254X	GCAAGTCAGCTGA	.	298	114	205	1	.	0	0	0	0	0
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152823605	152823605	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP2B3-109	NM_001001344	exon15	c.C2469A	p.S823S	GGCCTCCGACATC	.	638	220	555	2	.	0	0	0	0	0
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152936621	152936621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNCK-207	NM_001039582	exon8	c.C888A	p.Y296X	CTCGTCGTAGAAG	.	103	34	109	0	.	0	0	0	0	0
SLC6A8	6535	hgsc.bcm.edu	37	X	152954055	152954055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A8-131	NM_005629	exon1	c.G26A	p.G9D	AGAACGGCATCTA	.	12	7	0	0	.	0	0	0	0	0
SLC6A8	6535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152958807	152958807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A8-131	NM_005629	exon6	c.C1002A	p.N334K	CTTCAACAACAAC	.	361	121	269	0	.	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu	37	X	153033266	153033266	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon4	c.G1053C	p.Q351H	GGAGCAGGCCCGG	.	81	27	5	0	.	0	0	0	0	0
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	X	153035684	153035684	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon9	c.A1836T	p.P612P	GGTGCCACTTAAC	.	152	50	145	2	.	0	0	0	0	0
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153036070	153036070	+	Silent	SNP	C	C	A	rs143446986	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon11	c.C2052A	p.G684G	AGAGGGCGAGAGG	.	301	97	240	1	C|1.000;T|0.000	0	0	0	0	0
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153036423	153036423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon13	c.C2209A	p.L737M	CAGGGCCTGCCTG	.	333	119	263	1	.	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153042416	153042416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon30	c.G4977T	p.Q1659H	GGCCCAGAGGTGC	.	330	128	311	0	.	0	0	0	0	0
IDH3G	3421	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153055722	153055722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDH3G-90	NM_004135	exon4	c.G161C	p.R54P	GTGTGCCGCCCGC	.	311	82	309	1	.	0	0	0	0	0
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153133825	153133825	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	L1CAM-138	NM_000425	exon13	c.C1635A	p.P545P	CAAGGAGGGGTCA	.	318	123	270	0	.	0	0	0	0	0
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153220099	153220099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCFC1-132	NM_005334	exon17	c.G3751T	p.E1251X	GGGGCTCCCCAGC	.	147	59	42	1	.	0	0	0	0	0
HCFC1	3054	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153222835	153222835	+	Silent	SNP	G	G	C	rs2071134	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCFC1-132	NM_005334	exon13	c.C2283G	p.T761T	GGGCTTGGTGGTA	.	188	57	233	0	G|0.666;C|0.334	0	0	0	0	0
SLC10A3	8273	ucsc.edu;bcgsc.ca	37	X	153716005	153716005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A3-132	NM_001142392	exon3	c.C1275A	p.N425K	CAGGCTGTTCTGC	.	445	174	422	2	.	0	0	0	0	0
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153762677	153762677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	G6PD-135	NM_000402	exon6	c.G610C	p.G204R	CCCTCCCGAAGGG	.	164	72	161	1	.	0	0	0	0	0
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153927602	153927602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB3-227	NM_001081573	exon6	c.C1312A	p.P438T	TCACTGGGGGAGG	.	172	65	129	0	.	0	0	0	0	0
DKC1	1736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154001499	154001499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKC1-227	NM_001363	exon11	c.C1130A	p.P377H	CTTACCCTCGGAA	.	588	237	454	0	.	0	0	0	0	0
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154157538	154157538	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.C4527G	p.G1509G	AACTTTGCCAGAT	.	103	35	70	0	.	0	0	0	0	0
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154158316	154158316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.G3749T	p.S1250I	CTAGTGCTCAGTA	.	64	26	52	0	.	0	0	0	0	0
F8	2157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154176151	154176151	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon13	c.G1935A	p.Q645Q	TGACAACTGCAAA	.	182	75	133	2	.	0	0	0	0	0
MTCP1	4515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154294183	154294183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTCP1-658	NM_001018025	exon2	c.G103T	p.E35X	TTACCTCTTCCAC	.	81	28	70	3	.	0	0	0	0	0
IL9R	3581	ucsc.edu;bcgsc.ca	37	X	155235035	155235035	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_176786	exon7	c.G777T	p.L259L	CAGGCTGCGTGTC	.	684	245	550	4	.	0	0	0	0	0
IL9R	3581	bcgsc.ca	37	X	155239892	155239892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_002186	exon9	c.C1384A	p.Q462K	AACACACAGAGCT	.	332	65	336	1	.	0	0	0	0	0
PLCH2	9651	hgsc.bcm.edu	37	1	2430086	2430087	+	In_Frame_Ins	INS	-	-	GTGGGGGCC	rs142848828	by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCH2-229	NM_014638	exon17	c.2349_2350insGTGGGGGCC	p.E783delinsEVGA	TGGGGAGGTGGGG	.	36	14	21	0	.	0	0	0	0	0
MPL	4352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43818247	43818248	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MPL-9885	NM_005373	exon12	c.1712_1713insC	p.L571fs	AAATCCTCCCCAA	.	215	47	176	0	.	0	0	0	0	0
BRDT	676	hgsc.bcm.edu;bcgsc.ca	37	1	92447227	92447228	+	In_Frame_Ins	INS	-	-	AGC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRDT-374	NM_001242806	exon12	c.1929_1930insAGC	p.E643delinsES	GAGTGAGAGCAGC	.	348	132	281	0	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	23	22	2	2	-|0.389;CGC|0.611	0	0	0	0	0
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158549352	158549353	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10X1-69	NM_001004477	exon1	c.338_339insT	p.C113fs	AAGCTACAACCTG	.	563	61	370	0	.	0	0	0	0	0
PAX2	5076	hgsc.bcm.edu;bcgsc.ca	37	10	102509533	102509534	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003987	exon2	c.74_75insA	p.G25fs	TCGGGGGGGTGTT	.	114	30	59	0	.	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCGF6-226	NM_032154	exon1	c.84_85insGCCTCC	p.P28delinsPPP	GGAGACAGGAGGC	.	21	15	0	0	-|0.590;GGAGGC|0.410	0	0	0	0	0
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	7981838	7981839	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP10-209	NM_176821	exon2	c.1321_1322insA	p.P441fs	GCCTGGGGCCATC	.	54	30	66	0	.	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;bcgsc.ca	37	11	92616454	92616455	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon23	c.12832_12833insG	p.R4278fs	GCCCGGCGGGGCG	.	82	35	59	0	.	0	0	0	0	0
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	116444164	116444165	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MED13L-232	NM_015335	exon12	c.2291_2292insG	p.P764fs	GGCACCGGCGTGG	.	127	77	157	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	57	31	4	0	.	0	0	0	0	0
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1706047	1706048	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.1289_1290insC	p.G430fs	AGGGCGGCCGGTG	.	141	59	55	0	.	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	TGCTGCCAGCCTT	.	186	0	93	0	.	0	0	0	0	0
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42930702	42930703	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFTUD2-91	NM_004247	exon25	c.2523_2524insGA	p.D841fs	GACGCAATCTGCA	.	109	43	117	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	105	16	25	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	391	10	367	0	.	0	0	0	0	0
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	84	44	18	0	.	0	0	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	85722990	85722991	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon17	c.2635_2636insT	p.A879fs	TATTTGCCACGGC	.	114	26	128	0	.	0	0	0	0	0
FYB	2533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	39202214	39202215	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FYB-24	NM_001243093	exon2	c.879_880insA	p.K293fs	ATCTTCCTTTTTT	.	67	20	58	0	.	0	0	0	0	0
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72199544	72199545	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNPO1-228	NM_002270	exon23	c.2523_2524insT	p.I841fs	TTTTATATTTTTT	.	46	24	79	0	.	0	0	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615190	30615191	+	In_Frame_Ins	INS	-	-	GCG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf136-90	NM_001161376	exon1	c.182_183insGCG	p.P61delinsPR	GACACCCGCCGCC	.	41	16	4	0	.	0	0	0	0	0
GPR111	222611	broad.mit.edu;bcgsc.ca	37	6	47649793	47649794	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.1294_1295insA	p.V432fs	GCAGATGTGTGGT	.	281	35	267	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	30	0	0	0	.	0	0	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44063549	44063550	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRF-232	NM_002840	exon12	c.G1945T	p.V649L	GAGGCGGTGGACG	.	280	0	49	0	.	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182499425	182499426	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon12	c.A2173T	p.M725L	GCTTCCATGCGTC	.	165	0	95	0	.	0	0	0	0	0
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201009798	201009799	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon42	c.T5177C	p.L1726P	TGGGTCAGCAGTC	.	140	0	74	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237954769	237954770	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon93	c.C13518A	p.A4512E	GTTAGCCTTATTT	.	139	8	99	0	.	0	0	0	0	0
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	68139070	68139071	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA3-234	NM_013266	exon12	c.C1571A	p.A524E	CTTAAGGCTATGA	.	123	7	115	0	.	0	0	0	0	0
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	124907940	124907941	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon1	c.G47T	p.G16F	CCGGTGGCGTCTC	.	226	13	102	0	.	0	0	0	0	0
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	125639753	125639754	+	Missense_Mutation	DNP	CG	CG	AC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon2	c.C376G	p.R126V	CCACACGGACACT	.	138	0	91	0	.	0	0	0	0	0
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55433022	55433023	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C6-70	NM_001004704	exon1	c.C381A	p.P127Q	TAAGCCCCTGCAC	.	98	13	115	0	.	0	0	0	0	0
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103818443	103818444	+	Nonsense_Mutation	DNP	GG	GG	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFD-723	NM_025208	exon4	c.C519A	p.FQ173L*	GGGTTGGAAATCT	.	43	0	88	0	.	0	0	0	0	0
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102055036	102055037	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC1-94	NM_206819	exon20	c.C2029A	p.L652I	CCAATCCTAGGTA	.	54	10	87	0	.	0	0	0	0	0
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	70281793	70281794	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon10	c.T2150C	p.M717T	GATTCCATAGTGT	.	92	0	150	0	.	0	0	0	0	0
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	72063190	72063191	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH1-135	NM_080759	exon7	c.C1666A	p.P608I	GAGATGGAAAACC	.	56	0	110	0	.	0	0	0	0	0
EHD4	30844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42246065	42246066	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EHD4-92	NM_139265	exon2	c.G309A	p.M104L	ATACATCACGGCG	.	60	0	90	0	.	0	0	0	0	0
ULK3	25989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75132951	75132952	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ULK3-290	NM_001099436	exon5	c.G500T	p.W178F	TCATCCCACGGGG	.	143	5	154	0	.	0	0	0	0	0
TEKT5	146279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10769881	10769882	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEKT5-92	NM_144674	exon5	c.G1020T	p.A341S	GAAGGCCAGGTTG	.	134	4	111	0	.	0	0	0	0	0
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67579578	67579579	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM65A-92	NM_001193523	exon19	c.G3263T	p.R1088L	TGGTGCGGAATCT	.	118	21	141	0	.	0	0	0	0	0
CDRT15L2	256223	hgsc.bcm.edu	37	17	20483562	20483563	+	Nonsense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001190790	exon2	c.G367T	p.EG122D*	GTGGAGGGAGCTC	.	194	6	184	0	.	0	0	0	0	0
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27383223	27383224	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIPOX-90	NM_016518	exon8	c.G1074A	p.G358E	GGTGGGGAAGATC	.	104	12	133	0	.	0	0	0	0	0
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67285343	67285344	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA5-93	NM_018672	exon13	c.G1876C	p.G626L	CAATTCCTAATGA	.	33	0	29	0	.	0	0	0	0	0
RBFOX3	146713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77111616	77111617	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001082575	exon5	c.G181T	p.E61L	TGGCCTCGGAGCC	.	22	2	26	0	.	0	0	0	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769009	31769010	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C1689A	p.L564V	GCCCAGGGACAAC	.	156	0	211	0	.	0	0	0	0	0
MEIS1	4211	broad.mit.edu	37	2	66667049	66667050	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEIS1-226	NM_002398	exon3	c.G315T	p.G105V	GCCGGGGGTGGCG	.	47	1	54	0	.	0	0	0	0	0
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74761338	74761339	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL3-226	NM_032603	exon12	c.C1964A	p.A655E	AAGTTGGCACACT	.	190	2	204	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179481738	179481739	+	Missense_Mutation	DNP	CA	CA	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon256	c.T47877A	p.E13392K	TGGTTCAACTACA	.	31	2	46	0	.	0	0	0	0	0
DNPEP	23549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220239604	220239605	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNPEP-90	NM_012100	exon14	c.G1379A	p.G468D	AGGACTCCTGTGG	.	121	0	72	0	.	0	0	0	0	0
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5904314	5904315	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.C1525A	p.H509N	AGCTCCCATCACA	.	90	3	124	0	.	0	0	0	0	0
LAMP5	24141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9510300	9510301	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_012261	exon6	c.C677A	p.P226K	AATGCCCAGTGGA	.	72	2	113	0	C|0.500;T|0.500	0	0	0	0	0
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	19666953	19666954	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS15-160	NM_002772	exon20	c.G2277A	p.D760Y	GGAATCCTGTAAA	.	227	0	277	0	.	0	0	0	0	0
KRTAP15-1	254950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31812927	31812928	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP15-1-90	NM_181623	exon1	c.C283A	p.L95I	AGATCCCTTGGAT	.	119	35	107	0	.	0	0	0	0	0
TRH	7200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129695711	129695712	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRH-91	NM_007117	exon3	c.G382A	p.D128N	TCAGTCGATGTAA	.	188	5	189	0	.	0	0	0	0	0
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130159376	130159377	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153264	exon35	c.C6195A	p.T2065K	GTGGACCACTGAA	.	146	30	126	0	.	0	0	0	0	0
TM4SF1	4071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149095253	149095254	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM4SF1-90	NM_014220	exon1	c.G81A	p.L28I	GTAAAGCAAAATA	.	241	30	276	0	.	0	0	0	0	0
GRIA2	2891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158281286	158281287	+	Nonsense_Mutation	DNP	CC	CC	AG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA2-515	NM_000826	exon13	c.C2283G	p.S761*	AGGATCCTCATTA	.	151	0	231	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539244	187539245	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G8495T	p.R2834I	GATGCCCTGATCT	.	64	3	112	0	.	0	0	0	0	0
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	45262200	45262201	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon8	c.G2495T	p.R832I	GTGCTCCTGCCCC	.	70	7	44	0	C|0.999;G|0.000	0	0	0	0	0
HLA-DQB2	3120	broad.mit.edu;bcgsc.ca	37	6	32729575	32729576	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001198858	exon2	c.C225A	p.FQ75LE	CGCCTGGAACTCC	.	179	0	122	0	.	0	0	0	0	0
GPR111	222611	hgsc.bcm.edu	37	6	47649787	47649788	+	Nonsense_Mutation	DNP	GC	GC	TG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.C1289G	p.A498*	TGATGGCAGATGT	.	276	0	264	0	.	0	0	0	0	0
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	8258073	8258074	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ICA1-515	NM_022307	exon6	c.G440T	p.R147L	ATGGCCCGATGCC	.	89	7	123	0	.	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	11419314	11419315	+	Missense_Mutation	DNP	AG	AG	CA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.C4532T	p.P1511L	GCATCAGGCTGGC	.	86	0	127	0	.	0	0	0	0	0
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45697346	45697347	+	Missense_Mutation	DNP	AG	AG	GA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon6	c.G1170A	p.E390G	CACCGAGGTGGAT	.	136	0	200	0	.	0	0	0	0	0
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	81359060	81359061	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGF-516	NM_000601	exon8	c.G900T	p.LE300F*	TGTTTCCAAAGGA	.	59	4	94	0	.	0	0	0	0	0
EPO	2056	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100320745	100320746	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPO-514	NM_000799	exon5	c.G572T	p.G191M	GGACAGGGGACAG	.	167	0	135	0	.	0	0	0	0	0
PLOD3	8985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100855544	100855545	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLOD3-92	NM_001084	exon10	c.G1116A	p.D373Y	CATGTCCCTGGCC	.	162	0	104	0	.	0	0	0	0	0
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140269463	140269464	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon5	c.G1521T	p.ME507I*	GCTCTCCATTGAC	.	95	4	56	0	.	0	0	0	0	0
FAM115A	9747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143573262	143573263	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM115A-68	NM_001206938	exon2	c.G439T	p.G147F	GCAAGCCGCCACC	.	187	12	132	0	C|0.999;T|0.001	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32360319	32360320	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon41	c.G5819T	p.G1940V	GCGGCCCCATCCT	.	179	9	195	0	.	0	0	0	0	0
RBMXL3	139804	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114425745	114425746	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145346	exon1	c.A1742G	p.Q581W	CCAGCCAGAGCAA	.	294	0	207	0	.	0	0	0	0	0
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118723961	118723962	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.C1471A	p.L491N	AGCGGAGGCCTGT	.	54	5	48	0	.	0	0	0	0	0
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129147234	129147235	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon3	c.G487T	p.LD162FY	GCTTTGGACTCTC	.	237	10	208	0	.	0	0	0	0	0
OR13H1	347468	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130678317	130678318	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR13H1-108	NM_001004486	exon1	c.T271A	p.Y91N	CATCCCTACCTCT	.	185	10	204	0	.	0	0	0	0	0
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134679497	134679498	+	Splice_Site	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.339+1G>T	.	GGACAGGTAAAAA	.	87	2	113	0	.	0	0	0	0	0
IL9R	3581	broad.mit.edu;bcgsc.ca	37	X	155239857	155239858	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_002186	exon9	c.G1350T	p.G450V	CTATGGGGGATGG	.	360	20	336	0	.	0	0	0	0	0
