Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MIB2	142678	hgsc.bcm.edu	37	1	1564067	1564067	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIB2-90	NM_080875	exon16	c.2512delG	p.G838fs	GGGGCCGGGGGGG	.	61	22	18	1	.	0	0	0	0	0
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2316501	2316501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MORN1-92	NM_024848	exon6	c.C453T	p.N151N	GTCACCGTTCCTG	.	69	29	32	0	.	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6246838	6246840	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPL22-650	NM_000983	exon4	c.279_281del	p.93_94del	AGATTATTCTTCT	.	297	191	323	0	.	0	0	0	0	0
DFFA	1676	broad.mit.edu	37	1	10521671	10521671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DFFA-90	NM_004401	exon6	c.G872A	p.R291Q	AGCTCCCGCTCAC	.	320	6	308	0	.	9	9	0	0	0
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22852723	22852723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZBTB40-91	NM_001083621	exon19	c.C3554T	p.P1185L	TGGCCCCGACAGA	.	136	125	115	1	.	0	0	0	0	0
HPCAL4	51440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40148354	40148354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPCAL4-90	NM_016257	exon4	c.G430A	p.G144R	TGAGCCCGTCCTG	.	235	217	210	0	.	0	0	0	0	0
TRIT1	54802	bcgsc.ca	37	1	40309802	40309802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIT1-91	NM_017646	exon10	c.G1205A	p.R402Q	ATGATTCGATCAC	.	92	84	81	3	.	7	0	7	0	0
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47610627	47610627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CYP4A22-139	NM_001010969	exon9	c.C1207G	p.R403G	GATGGGCGCTCCT	.	194	173	206	1	.	0	0	0	0	0
RPF1	80135	broad.mit.edu;bcgsc.ca	37	1	84945010	84945010	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPF1-90	NM_025065	exon1	c.C46G	p.L16V	AAAAGTCTAAAAC	.	129	7	111	1	.	15	15	0	0	0
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90487883	90487883	+	Silent	SNP	G	G	A	rs146247512	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF326-91	NM_182976	exon11	c.G1380A	p.A460A	GAAGGCGCGATAT	.	170	152	197	0	G|0.999;A|0.001	24	0	24	0	0
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DPYD-278	NM_000110	exon17	c.2121delT	p.F707fs	CTTGGCAAAAAAA	.	87	70	72	0	.	0	0	0	0	0
KCNC4	3749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110766300	110766300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNC4-154	NM_001039574	exon2	c.G1393A	p.A465T	ACCATCGCCATGC	.	165	42	155	1	.	0	0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216774	111216774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNA3-95	NM_002232	exon1	c.G658A	p.V220M	GCCACACCTGGCG	.	81	4	57	0	.	0	0	0	0	0
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117131615	117131615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IGSF3-92	NM_001542	exon9	c.C2201T	p.A734V	AGCACCGCAAAGT	.	236	218	221	1	.	4	0	4	0	0
BOLA1	51027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149871945	149871945	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BOLA1-69	NM_016074	exon2	c.C333T	p.P111P	GACCCCCGCCCAG	.	117	105	64	1	.	15	0	15	0	0
FLG	2312	broad.mit.edu;bcgsc.ca	37	1	152286313	152286313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FLG-106	NM_002016	exon3	c.C1049T	p.A350V	CTGTCTGCAGAGT	.	371	11	280	0	.	0	0	0	0	0
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRR3-45	NM_001097589	exon2	c.C219T	p.G73G	GCCAGGCTGTACC	.	105	49	116	0	A|0.000;C|0.697;T|0.303	0	0	0	0	0
SPRR2G	6706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153122484	153122484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRR2G-68	NM_001014291	exon2	c.C103A	p.P35T	GGTAAGGCTCAGG	.	76	68	73	0	.	0	0	0	0	0
PBXIP1	57326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154917581	154917583	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PBXIP1-153	NM_020524	exon11	c.2113_2115del	p.705_705del	CTTGTCCTTCTTC	.	90	62	81	0	.	0	0	0	0	0
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156498355	156498355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IQGAP3-96	NM_178229	exon36	c.C4619T	p.A1540V	AGCTGAGCAGCAG	.	60	51	64	0	.	1	0	1	0	0
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161068381	161068382	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHDC9-22	NM_152366	exon1	c.56_57del	p.19_19del	GGAGGCCAGTGGC	.	131	113	72	0	.	0	0	0	0	0
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175372700	175372700	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNR-324	NM_003285	exon4	c.G552A	p.E184E	ACAGGACTCAAAG	.	190	162	161	2	.	0	0	0	0	0
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179621206	179621206	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TDRD5-94	NM_001199091	exon13	c.C2034T	p.Y678Y	TTTATACACGACA	.	143	127	135	0	.	1	0	1	0	0
CFH	3075	broad.mit.edu;bcgsc.ca	37	1	196659363	196659363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CFH-566	NM_001014975	exon9	c.C1330T	p.R444C	TGCATCCGTGTCA	.	464	22	417	1	.	0	0	0	0	0
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197031011	197031011	+	Silent	SNP	G	G	A	rs142562955		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	F13B-92	NM_001994	exon3	c.C354T	p.C118C	TGAAGCGCAACCA	.	108	94	89	0	G|1.000;A|0.000	0	0	0	0	0
NUAK2	81788	ucsc.edu;bcgsc.ca	37	1	205273536	205273536	+	Missense_Mutation	SNP	C	C	T	rs200627742		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUAK2-391	NM_030952	exon7	c.G929A	p.R310Q	CCCACTCGGGTGG	.	212	191	178	3	.	3	0	3	0	0
SLC41A1	254428	broad.mit.edu;bcgsc.ca	37	1	205760791	205760791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC41A1-92	NM_173854	exon11	c.G1412A	p.G471D	TCCAGGCCCCGGC	.	248	8	229	0	.	7	7	0	0	0
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu	37	1	226352491	226352491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACBD3-226	NM_022735	exon3	c.568delA	p.R190fs	TTCACCTTTTTTT	.	120	30	127	0	.	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233135059	233135059	+	Missense_Mutation	SNP	G	G	A	rs201746355		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCNXL2-91	NM_014801	exon31	c.C5395T	p.R1799C	GATTGCGGTTGCG	.	98	35	113	0	.	5	2	3	0	0
IDI1	3422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1088637	1088637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IDI1-90	NM_004508	exon4	c.G472T	p.A158S	CAAGGGCGTCACT	.	196	32	94	1	.	443	366	76	0	1
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5948345	5948345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO18-228	NM_032807	exon4	c.A656G	p.D219G	CAGAGGACAGTAC	.	464	99	225	0	.	15	11	4	0	0
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7269870	7269870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SFMBT2-141	NM_001029880	exon10	c.G1150C	p.D384H	GATAATCTGCCCA	.	108	59	54	0	.	0	0	0	0	0
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	8051255	8051255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TAF3-69	NM_031923	exon5	c.G2530A	p.V844M	GCCCCCGTGCGCA	.	75	37	17	0	.	15	5	10	0	0
KIAA1217	56243	hgsc.bcm.edu;ucsc.edu	37	10	24783527	24783527	+	Missense_Mutation	SNP	C	C	T	rs148941784	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1217-98	NM_019590	exon7	c.C1778T	p.A593V	AAGATGCGTCTAG	.	56	6	19	0	C|0.999;T|0.001	0	0	0	0	0
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu	37	10	27687470	27687470	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTCHD3-94	NM_001034842	exon4	c.2057delA	p.N686fs	TAGACATTTTTTT	.	33	12	17	0	.	0	0	0	0	0
ZNF25	219749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	38241708	38241710	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF25-154	NM_145011	exon6	c.716_718del	p.239_240del	TCACATAGAAGAA	.	195	74	117	0	.	0	0	0	0	0
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45484790	45484790	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASSF4-290	NM_032023	exon7	c.G600A	p.L200L	AACCCTGCAGGTG	.	299	148	162	0	.	3	2	1	0	0
NCOA4	8031	broad.mit.edu	37	10	51579175	51579175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NCOA4-1042	NM_001145261	exon3	c.A82C	p.S28R	AGCTCCAGTAATA	.	90	10	45	0	.	16	15	1	0	0
ASAH2B	653308	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52502717	52502717	+	Silent	SNP	G	G	A	rs2820742	by2hit2allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001079516	exon2	c.G33A	p.T11T	CCGCACGCATTAT	.	1088	394	589	3	G|0.500;A|0.500	8	4	4	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	56423995	56423995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCDH15-193	NM_001142763	exon2	c.T28G	p.C10G	CTAAACATGTCCA	.	108	51	44	0	.	0	0	0	0	0
EGR2	1959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64573625	64573625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EGR2-92	NM_000399	exon2	c.T773C	p.V258A	GGGGGCACCCGCA	.	146	62	108	0	.	0	0	0	0	0
UNC5B	219699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73046620	73046620	+	Missense_Mutation	SNP	G	G	A	rs143653939	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UNC5B-228	NM_001244889	exon5	c.G727A	p.V243I	GTCATCGTCTACG	.	274	126	160	1	G|0.999;A|0.001	0	0	0	0	0
HTR7	3363	broad.mit.edu	37	10	92617259	92617259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HTR7-91	NM_019860	exon1	c.C170A	p.A57E	GTGGGCGCCGGGC	.	85	5	27	0	.	0	0	0	0	0
MYOF	26509	broad.mit.edu;bcgsc.ca	37	10	95191176	95191176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOF-93	NM_133337	exon4	c.C334A	p.Q112K	TATCTTGCCCTTT	.	225	8	152	0	.	0	0	0	0	0
GBF1	8729	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104136514	104136514	+	Silent	SNP	C	C	T	rs139000128		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GBF1-91	NM_001199378	exon32	c.C4245T	p.C1415C	GCTCTGCGTCAAG	.	40	6	30	1	C|1.000;T|0.000	57	47	10	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	4	4	0	0	C|0.759;A|0.241	1	1	0	0	0
CALHM1	255022	bcgsc.ca	37	10	105215373	105215373	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CALHM1-91	NM_001001412	exon2	c.G687A	p.K229K	GAAGAGCTTGCGC	.	323	152	156	4	.	0	0	0	0	0
ADRA2A	150	broad.mit.edu	37	10	112839104	112839104	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADRA2A-90	NM_000681	exon1	c.C1350T	p.R450R	CCGCCGCGCCTTC	.	190	5	86	1	.	33	32	1	0	0
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115904312	115904312	+	Missense_Mutation	SNP	C	C	T	rs201374071		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C10orf118-92	NM_018017	exon6	c.G1165A	p.V389I	TGATGACGTGAGA	.	238	35	120	0	C|0.999;T|0.000	3	3	0	0	0
PNLIPRP3	119548	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118220558	118220558	+	Missense_Mutation	SNP	G	G	A	rs114674677	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNLIPRP3-91	NM_001011709	exon6	c.G646A	p.V216I	GTTGACGTTATTC	.	182	80	106	0	G|0.999;A|0.001	1	1	0	0	0
PRLHR	2834	broad.mit.edu	37	10	120354224	120354224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRLHR-90	NM_004248	exon2	c.A533G	p.Y178C	ACAGCGTAGGCGC	.	21	4	8	0	.	0	0	0	0	0
FAM45A	404636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	120879946	120879946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAM45A-91	NM_207009	exon5	c.C575T	p.A192V	TAGAAGCGGTCCA	.	517	102	273	2	.	19	15	4	0	0
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	128830513	128830513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DOCK1-698	NM_001380	exon18	c.G1778A	p.G593E	GCCTTGGGAGCTG	.	620	277	286	2	.	5	0	5	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218800	134218800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PWWP2B-90	NM_001098637	exon2	c.G796A	p.V266M	GGAGAGGTGGTCA	.	344	8	103	0	.	48	47	1	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651158	1651169	+	In_Frame_Del	DEL	GGCTGTGGCTCT	GGCTGTGGCTCT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KRTAP5-5-23	NM_001001480	exon1	c.88_99del	p.30_33del	TGTGGAGGCTGTG	.	72	7	17	0	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu;ucsc.edu	37	11	1858479	1858479	+	Missense_Mutation	SNP	G	G	A	rs138799724	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYT8-91	NM_138567	exon9	c.G1024A	p.V342I	GAGCCCGTAGGCA	.	24	11	17	0	G|0.998;A|0.002	0	0	0	0	0
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6550209	6550209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNHD1-24	NM_144666	exon12	c.G2205A	p.M735I	AGACATGAGAGGT	.	149	128	142	2	.	0	0	0	0	0
RNF141	50862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10540661	10540663	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RNF141-226	NM_016422	exon5	c.460_462del	p.154_154del	ACAACACTCCTCC	.	44	35	34	0	.	0	0	0	0	0
KCNJ11	3767	bcgsc.ca	37	11	17409071	17409071	+	Missense_Mutation	SNP	C	C	T	rs77131926		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNJ11-91	NM_000525	exon1	c.G568A	p.A190T	GCAGGGCGATCAC	.	93	82	107	3	C|0.999;T|0.001	0	0	0	0	0
ABCC8	6833	bcgsc.ca	37	11	17452492	17452492	+	Silent	SNP	G	G	A	rs1799857	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABCC8-91	NM_000352	exon12	c.C1686T	p.H562H	GCTGACGTGGCCC	.	182	7	156	1	G|0.566;A|0.434	0	0	0	0	0
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18303703	18303703	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPS5-133	NM_181507	exon22	c.G3123A	p.T1041T	TGGCCTCGTGCTC	.	72	66	85	0	.	14	0	14	0	0
BDNF	627	ucsc.edu;bcgsc.ca	37	11	27681195	27681195	+	Splice_Site	SNP	T	T	C	rs28405820		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BDNF-514	.	.	.	.	TGTGTGTGCGCGC	.	38	34	39	1	.	3	3	0	0	0
SLC39A13	91252	broad.mit.edu	37	11	47433996	47433996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC39A13-90	NM_152264	exon4	c.G515A	p.S172N	TGGACAGCAAGGA	.	129	4	141	0	.	31	31	0	0	0
PGA5	5222	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61018642	61018642	+	Silent	SNP	C	C	T	rs12280940	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PGA5-91	NM_014224	exon9	c.C1056T	p.N352N	CATGAACGTCCCC	.	524	103	462	1	C|0.912;T|0.088	0	0	0	0	0
MIR194-2	406970	ucsc.edu;bcgsc.ca	37	11	64658846	64658846	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	.	.	.	.	CAGATAACAGCAG	.	167	150	135	3	.	0	0	0	0	0
DPP3	10072	broad.mit.edu	37	11	66272116	66272116	+	Missense_Mutation	SNP	C	C	T	rs147163996		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DPP3-46	NM_130443	exon17	c.C1912T	p.R638W	GGAGGGCGGGCCC	.	63	3	66	0	C|1.000;T|0.000	19	18	1	0	0
CCS	9973	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66361154	66361154	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCS-90	NM_005125	exon2	c.C81T	p.D27D	TGTGGACGCGGTG	.	98	89	99	1	.	29	1	28	0	0
MYO7A	4647	broad.mit.edu;bcgsc.ca	37	11	76900479	76900479	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYO7A-138	NM_000260	exon28	c.C3594T	p.C1198C	TCTCTGCGTGGGC	.	83	5	121	1	.	0	0	0	0	0
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115111112	115111112	+	Silent	SNP	G	G	A	rs138296059		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CADM1-92	NM_014333	exon2	c.C153T	p.D51D	TGTCACGTCTTTC	.	86	34	96	0	G|1.000;A|0.000	14	8	6	0	0
SIK3	23387	ucsc.edu;bcgsc.ca	37	11	116734454	116734454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SIK3-919	NM_025164	exon15	c.C1715T	p.A572V	ATGCTCGCAGCCC	.	214	192	196	2	.	5	0	4	1	0
MLL	4297	broad.mit.edu	37	11	118344186	118344186	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon3	c.2312delC	p.T771fs	CTCTCACCCCCCC	.	119	8	128	0	.	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118344494	118344495	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon3	c.2620_2621del	p.874_874del	AAGAGTAGAGAGA	.	46	38	47	0	.	0	0	0	0	0
MLL	4297	bcgsc.ca	37	11	118367048	118367048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon20	c.C5630T	p.A1877V	AGTGTGCGTTATG	.	123	110	128	3	.	0	0	0	0	0
CCDC77	84318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	539878	539878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCDC77-91	NM_032358	exon7	c.A559C	p.S187R	GAGCAGAGTGAAT	.	169	77	94	0	.	8	3	5	0	0
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3736625	3736625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EFCAB4B-92	NM_001144958	exon17	c.C1909T	p.R637W	ACCGCCGGACCGA	.	198	35	91	0	.	0	0	0	0	0
VWF	7450	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6219643	6219643	+	Silent	SNP	G	G	A	rs202062122		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWF-163	NM_000552	exon5	c.C429T	p.S143S	GTTGCCGCTGCCA	.	315	163	148	1	G|0.999;A|0.000	15	15	0	0	0
IFFO1	25900	hgsc.bcm.edu;bcgsc.ca	37	12	6657974	6657974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IFFO1-68	NM_001193457	exon6	c.1122delG	p.G374fs	CTTCCGCCCCCCC	.	343	48	153	1	.	0	0	0	0	0
LPAR5	57121	broad.mit.edu	37	12	6729418	6729418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPAR5-70	NM_001142961	exon2	c.G997A	p.E333K	ACCTTTCGGATTG	.	72	3	33	0	.	0	0	0	0	0
ZNF384	171017	hgsc.bcm.edu	37	12	6787405	6787405	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF384-1083	NM_133476	exon6	c.574delC	p.R192fs	GGCCCCGGGGTGG	.	189	23	88	1	.	0	0	0	0	0
ATN1	1822	ucsc.edu	37	12	7045912	7045912	+	Silent	SNP	G	G	A	rs144280633	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	202	29	131	0	G|0.972;A|0.028	3285	3220	60	4	1
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7356126	7356126	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PEX5-91	NM_001131023	exon10	c.T990G	p.L330L	TGACCTTACGTCA	.	245	138	123	0	.	12	8	4	0	0
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10766108	10766108	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGOHB-153	NM_018048	exon1	c.C24T	p.Y8Y	GCGCAGGTAGAAA	.	260	107	89	0	.	19	13	6	0	0
PRB3	5544	hgsc.bcm.edu	37	12	11420332	11420458	+	Splice_Site	DEL	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRB3-1	.	.	.	.	CTGGATGAGGGTG	.	87	0	35	0	.	0	0	0	0	0
C12orf36	283422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13526224	13526224	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C12orf36-90	.	.	.	.	CCGTCTGTCCACT	.	156	65	68	1	.	0	0	0	0	0
KIF21A	55605	broad.mit.edu;bcgsc.ca	37	12	39751149	39751149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF21A-97	NM_001173463	exon9	c.C1306T	p.R436C	TTACACGCAGGTT	.	234	7	100	1	.	1	1	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40422218	40422218	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC2A13-515	NM_052885	exon3	c.A810T	p.G270G	AGTCTGTCCTTTC	.	62	9	42	0	.	4	4	0	0	0
CACNB3	784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49218962	49218962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CACNB3-90	NM_000725	exon7	c.C509T	p.P170L	TTCCCCCATATGA	.	333	59	161	0	.	6	4	2	0	0
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51453177	51453177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LETMD1-90	NM_001243689	exon9	c.T1085C	p.V362A	ACGTGGTCCTGCT	.	406	187	175	0	.	59	32	27	0	0
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54448765	54448765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXC4-91	NM_014620	exon4	c.C571A	p.H191N	ATCGCCCACTCGC	.	430	196	200	0	.	8	5	3	0	0
CBX5	23468	hgsc.bcm.edu;broad.mit.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CBX5-226	NM_012117	exon3	c.317delA	p.K106fs	TCTCTCTTTTTTT	.	25	13	13	0	.	0	0	0	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57579562	57579562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRP1-596	NM_002332	exon41	c.G6712A	p.A2238T	GTCATCGCCCTGG	.	243	106	119	2	.	2	2	0	0	0
XPOT	11260	hgsc.bcm.edu;broad.mit.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XPOT-652	NM_007235	exon6	c.370delT	p.F124fs	CCCAAGTTTTTTT	.	250	135	122	0	.	0	0	0	0	0
KRR1	11103	hgsc.bcm.edu;broad.mit.edu	37	12	75893593	75893593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KRR1-92	NM_007043	exon10	c.1142delA	p.K381fs	TGTTACTTTTTTT	.	59	19	24	0	.	0	0	0	0	0
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102437938	102437938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_016053	exon4	c.A269G	p.N90S	GTGACATTTAAAG	.	224	96	85	0	.	105	65	40	0	0
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105446693	105446693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ALDH1L2-91	NM_001034173	exon11	c.A1304T	p.N435I	ATTTCATTGACCT	.	196	68	108	0	.	0	0	0	0	0
CUX2	23316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111760254	111760254	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CUX2-140	NM_015267	exon18	c.C2796T	p.S932S	CGTGAGCGACATG	.	318	175	58	1	.	0	0	0	0	0
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122242658	122242658	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SETD1B-86	NM_015048	exon1	c.15delC	p.H5fs	CAGTCACCCCCCC	.	164	70	87	0	.	0	0	0	0	0
EP400	57634	ucsc.edu;bcgsc.ca	37	12	132547090	132547090	+	Silent	SNP	A	A	G	rs7974276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EP400-520	NM_015409	exon47	c.A8178G	p.Q2726Q	GCAGCAACAACAG	.	291	81	164	2	A|0.794;G|0.206	79	6	72	0	1
EP400	57634	bcgsc.ca	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs28513925	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EP400-520	NM_015409	exon47	c.A8181G	p.Q2727Q	GCAACAACAGCAG	.	298	77	169	3	A|0.500;G|0.500	43	6	37	0	0
NUFIP1	26747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45563471	45563471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUFIP1-90	NM_012345	exon1	c.G101A	p.R34Q	CTGTCCCGCGGCG	.	128	111	90	1	.	1	0	1	0	0
TRIM13	10206	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50590277	50590277	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIM13-228	.	.	.	.	AAGTTCCTCAGGC	.	63	24	54	0	.	0	0	0	0	0
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454943	84454943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLITRK1-94	NM_052910	exon1	c.G700T	p.A234S	TCAGGGCATTCTT	.	107	86	117	1	.	0	0	0	0	0
SLC15A1	6564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99339879	99339879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC15A1-91	NM_005073	exon21	c.G1783A	p.E595K	CCACTTCGCCACA	.	118	19	116	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu	37	13	103381996	103381996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146197	exon4	c.21051delT	p.F7017fs	ACAGGCAAAAAAA	.	70	21	55	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103391148	103391148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146197	exon4	c.G11899T	p.E3967X	AAATCTCAACTTC	.	37	32	40	0	.	0	0	0	0	0
SLC10A2	6555	broad.mit.edu;bcgsc.ca	37	13	103718400	103718400	+	Missense_Mutation	SNP	C	C	T	rs201168803		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC10A2-94	NM_000452	exon1	c.G200A	p.G67D	CAAATGCCCCACG	.	158	15	139	0	.	0	0	0	0	0
RPGRIP1	57096	bcgsc.ca	37	14	21793413	21793413	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPGRIP1-140	NM_020366	exon15	c.G2238T	p.G746G	GTTCGGGGTTCTA	.	261	120	128	4	.	0	0	0	0	0
SALL2	6297	broad.mit.edu;bcgsc.ca	37	14	21992636	21992636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SALL2-92	NM_005407	exon2	c.G1226A	p.R409H	GTAAAACGGTTTC	.	548	12	290	1	.	8	8	0	0	0
REM2	161253	broad.mit.edu;bcgsc.ca	37	14	23355347	23355347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	REM2-704	NM_173527	exon4	c.C634T	p.R212W	CTACTTCGGCTCC	.	281	13	134	1	.	0	0	0	0	0
ACIN1	22985	bcgsc.ca	37	14	23549785	23549785	+	Missense_Mutation	SNP	T	T	C	rs3811182	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACIN1-156	NM_001164814	exon6	c.A933G	p.I311M	TCTAGGTATCTCT	.	249	7	122	2	T|0.511;C|0.489	20	20	0	0	0
EFS	10278	broad.mit.edu	37	14	23829997	23829997	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EFS-153	NM_005864	exon2	c.64delC	p.Q22fs	GCTCCTGGGGGGA	.	213	9	84	0	.	0	0	0	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	23859651	23859651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYH6-94	NM_002471	exon26	c.G3347A	p.R1116H	TCGATGCGTGCCT	.	103	39	23	0	.	0	0	0	0	0
AP1G2	8906	bcgsc.ca	37	14	24031492	24031495	+	Splice_Site	DEL	CTTA	CTTA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTTA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AP1G2-45	.	.	.	.	CCCCTTCTTACTT	.	321	154	191	1	.	0	0	0	0	0
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24538366	24538366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRRC16B-139	NM_138360	exon39	c.C4003T	p.R1335W	GGCCGGCGGACTG	.	241	106	128	0	.	0	0	0	0	0
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24885257	24885258	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NYNRIN-3	NM_025081	exon9	c.4302_4303del	p.1434_1435del	CCGGGGCTCTCTG	.	124	74	68	0	.	0	0	0	0	0
C14orf23	387978	bcgsc.ca	37	14	29261305	29261305	+	RNA	DEL	A	A	-	rs200251419	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C14orf23-23	.	.	.	.	AGCACTAAAAAAA	.	152	83	72	9	-|0.667;AAC|0.333	0	0	0	0	0
INSM2	84684	broad.mit.edu	37	14	36004658	36004658	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	INSM2-226	NM_032594	exon1	c.C1200A	p.G400G	TCAGGGCCCCTAC	.	146	5	39	1	.	0	0	0	0	0
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	55818555	55818555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO34-228	NM_017943	exon2	c.1447delT	p.F483fs	ATGTTGTTTTTTT	.	197	78	106	0	.	0	0	0	0	0
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596621	64596621	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYNE2-164	NM_182914	exon75	c.14139+2T>C	.	TAGAGGTATGCCT	.	230	95	91	2	.	0	0	0	0	0
ZBTB1	22890	broad.mit.edu	37	14	64989787	64989787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZBTB1-91	NM_014950	exon2	c.1565delA	p.Q522fs	GTATCCAAAAAAA	.	198	13	108	0	.	0	0	0	0	0
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91701094	91701094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPR68-91	NM_001177676	exon2	c.C301A	p.L101M	CGTACAGGAGGAT	.	405	199	186	0	.	0	0	0	0	0
GSC	145258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95235475	95235475	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSC-90	NM_173849	exon2	c.G435A	p.S145S	GGTGCGCGACAGC	.	343	83	114	0	.	0	0	0	0	0
BDKRB2	624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	96706741	96706741	+	Missense_Mutation	SNP	G	G	A	rs200693201		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BDKRB2-662	NM_000623	exon3	c.G76A	p.A26T	TTCAGCGCCGACA	.	148	68	86	1	.	0	0	0	0	0
ADSSL1	122622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105201420	105201420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADSSL1-515	NM_199165	exon2	c.C385T	p.P129S	CTGCTGCCCAGCG	.	459	89	201	1	.	5	3	2	0	0
ADSSL1	122622	broad.mit.edu	37	14	105201447	105201447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADSSL1-515	NM_199165	exon2	c.G412A	p.V138M	AAGGCCGTGTCCT	.	462	10	197	0	.	0	0	0	0	0
CEP170B	283638	broad.mit.edu	37	14	105352885	105352890	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001112726	exon12	c.2309_2314del	p.770_772del	GCAGACGCAGGAG	.	24	10	6	0	.	0	0	0	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	308	132	132	0	.	0	0	0	0	0
RYR3	6263	ucsc.edu;bcgsc.ca	37	15	34080629	34080629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR3-520	NM_001243996	exon67	c.C9800T	p.P3267L	TCTACCCCATGCT	.	283	124	131	2	.	0	0	0	0	0
LPCAT4	254531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34651423	34651423	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPCAT4-90	NM_153613	exon14	c.C1480T	p.R494X	TGCCTCGAGAGGT	.	93	48	41	0	.	29	22	7	0	0
SPRED1	161742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38643332	38643332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRED1-1085	NM_152594	exon7	c.A802G	p.K268E	ATGTGGAAAAATG	.	171	29	83	0	.	11	7	4	0	0
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38786797	38786797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGRP1-697	NM_005739	exon16	c.G2045A	p.G682D	TCACTGCCAATCC	.	142	68	78	0	.	2	0	2	0	0
INO80	54617	broad.mit.edu	37	15	41337219	41337219	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	INO80-72	NM_017553	exon24	c.C2790A	p.R930R	CCAGGAGCGTAGC	.	97	5	46	1	.	14	12	2	0	0
SPTBN5	51332	bcgsc.ca	37	15	42169369	42169369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPTBN5-91	NM_016642	exon18	c.G3551A	p.G1184D	GTGAAACCATCCA	.	656	620	351	4	.	0	0	0	0	0
B2M	567	hgsc.bcm.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	B2M-93	NM_004048	exon1	c.37_38del	p.13_13del	GCGCTACTCTCTC	.	201	177	65	2	.	0	0	0	0	0
SPATA5L1	79029	hgsc.bcm.edu	37	15	45695445	45695445	+	Missense_Mutation	SNP	C	C	G	rs143453038		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPATA5L1-94	NM_024063	exon1	c.C818G	p.S273C	AGGGTTCCCGGCC	.	15	14	2	0	C|0.982;G|0.018	3	0	3	0	0
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	53908071	53908071	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR72-92	NM_182758	exon15	c.2332delA	p.M778fs	GCTGCATTTTTTT	.	130	23	69	0	.	0	0	0	0	0
MNS1	55329	hgsc.bcm.edu	37	15	56736723	56736723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MNS1-91	NM_018365	exon5	c.605delA	p.K202fs	TCCTGCTTTTTTT	.	94	42	36	0	.	0	0	0	0	0
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	59182525	59182526	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLTM-91	NM_024755	exon15	c.2033_2034del	p.678_678del	TTCCATTCTCTCT	.	136	27	83	0	.	0	0	0	0	0
NR2E3	10002	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	72105935	72105935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR2E3-22	NM_016346	exon7	c.C953T	p.T318M	CCCCCACGGAGTT	.	131	46	31	0	.	0	0	0	0	0
PML	5371	broad.mit.edu;bcgsc.ca	37	15	74315257	74315257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PML-1083	NM_033250	exon3	c.G691A	p.A231T	ATCAGCGCAGAGA	.	193	7	71	0	.	13	12	1	0	0
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74315308	74315308	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PML-1083	NM_033250	exon3	c.C742T	p.Q248X	GCGCTGCAGGAGC	.	133	57	37	0	.	2	2	0	0	0
C15orf37	283687	hgsc.bcm.edu;broad.mit.edu	37	15	80215495	80215495	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	.	.	.	.	TCTCCTCCCCCTC	.	37	16	16	0	.	0	0	0	0	0
KIAA1199	57214	broad.mit.edu	37	15	81201549	81201549	+	Missense_Mutation	SNP	G	G	A	rs200544972		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1199-93	NM_018689	exon13	c.G1699A	p.E567K	GTAGACGAAAGGG	.	338	8	167	0	G|0.999;A|0.001	0	0	0	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81218052	81218052	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1199-93	NM_018689	exon18	c.C2376T	p.H792H	GGACCACGGGGCC	.	170	159	64	0	.	0	0	0	0	0
KIF7	374654	hgsc.bcm.edu	37	15	90171910	90171910	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon19	c.3772delG	p.A1258fs	GGGGGGCCCCCTC	.	113	19	49	2	.	0	0	0	0	0
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90192528	90192528	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon4	c.C600T	p.N200N	CGCCGCGTTGCCC	.	152	80	33	0	.	0	0	0	0	0
TPSAB1	7177	broad.mit.edu	37	16	1291287	1291287	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TPSAB1-22	NM_003294	exon3	c.C195T	p.H65H	CATCCACCCCCAG	.	214	7	120	0	.	0	0	0	0	0
TELO2	9894	hgsc.bcm.edu	37	16	1544462	1544462	+	Silent	SNP	G	G	T	rs146829780	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TELO2-90	NM_016111	exon2	c.G180T	p.S60S	CTTCTCGCCTGTC	.	107	6	96	0	G|1.000;C|0.000	18	18	0	0	0
IFT140	9742	broad.mit.edu;bcgsc.ca	37	16	1608017	1608017	+	Missense_Mutation	SNP	C	C	A	rs140458893	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IFT140-95	NM_014714	exon19	c.G2318T	p.R773L	GCGTCCCGGGTGG	.	157	8	125	2	C|1.000;T|0.000	1	1	0	0	0
DNAJA3	9093	ucsc.edu;bcgsc.ca	37	16	4496977	4496977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAJA3-291	NM_001135110	exon8	c.G1087A	p.A363T	GGTACAGCCAGAG	.	149	137	166	3	.	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	18864971	18864974	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGT	GAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMG1-1160	NM_015092	exon31	c.4699_4702del	p.1567_1568del	CTATTAGAGTGAG	.	222	87	123	0	.	0	0	0	0	0
GPR139	124274	broad.mit.edu	37	16	20043749	20043749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPR139-92	NM_001002911	exon2	c.A370G	p.I124V	TGTCAATGGTTAA	.	417	11	215	0	.	0	0	0	0	0
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22128481	22128481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWA3A-1	NM_173615	exon11	c.A974T	p.Y325F	ACTGCTACAGCCC	.	357	161	151	0	.	0	0	0	0	0
GTF3C1	2975	broad.mit.edu	37	16	27512657	27512657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GTF3C1-94	NM_001520	exon12	c.A1916C	p.K639T	ATCATCTTCTGAA	.	312	7	183	0	.	0	0	0	0	0
APOBR	55911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	28509449	28509449	+	Silent	SNP	C	C	T	rs186642005	by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	APOBR-90	NM_018690	exon3	c.C3003T	p.R1001R	GAGTCGCGTGCAC	.	34	15	13	0	C|0.999;T|0.000	1	1	0	0	0
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28909569	28909569	+	Missense_Mutation	SNP	G	G	A	rs200092983		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP2A1-93	NM_004320	exon14	c.G1561A	p.V521I	GAGGGCGTCATCG	.	120	50	71	0	G|0.999;A|0.001	2	2	0	0	0
INO80E	283899	hgsc.bcm.edu	37	16	30007665	30007665	+	Frame_Shift_Del	DEL	A	A	-	rs34220380		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	INO80E-91	NM_173618	exon1	c.34delA	p.K12fs	GACTACAAAAAAA	.	455	12	180	2	.	0	0	0	0	0
SRCAP	10847	hgsc.bcm.edu;bcgsc.ca	37	16	30736371	30736371	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SRCAP-94	NM_006662	exon25	c.5626delC	p.P1876fs	CGCCAGCCCCCCC	.	93	44	48	1	.	0	0	0	0	0
BCL7C	9274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30904237	30904238	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BCL7C-227	NM_004765	exon3	c.203_204del	p.68_68del	ACGGGATCTCTCT	.	47	22	24	0	.	0	0	0	0	0
WDR59	79726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74937919	74937919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR59-92	NM_030581	exon18	c.C1792T	p.R598C	ATAAACGAAGGTT	.	73	60	100	1	.	6	1	5	0	0
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81164209	81164209	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PKD1L2-92	.	.	.	.	CTGCCCGTAGGCC	.	123	50	116	0	.	0	0	0	0	0
ZZEF1	23140	bcgsc.ca	37	17	3926110	3926110	+	Missense_Mutation	SNP	C	C	G	rs711177	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZZEF1-93	NM_015113	exon44	c.G7105C	p.E2369Q	TCTCCTCAAAACC	.	136	5	141	0	C|0.870;G|0.130	0	0	0	0	0
SMTNL2	342527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4497117	4497119	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMTNL2-90	NM_001114974	exon4	c.731_733del	p.244_245del	CCACAGAGAAGAA	.	69	16	79	0	.	0	0	0	0	0
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7251702	7251702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACAP1-153	NM_014716	exon17	c.G1586A	p.R529Q	GAGGGCGAAGAGG	.	88	77	72	0	.	0	0	0	0	0
NLGN2	57555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7318830	7318830	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NLGN2-90	NM_020795	exon6	c.C1038T	p.R346R	CCCCAGCTACCAC	.	224	12	160	0	.	0	0	0	0	0
SHISA6	388336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11461177	11461177	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SHISA6-67	NM_207386	exon6	c.G1212A	p.P404P	GAAGCCGTTGCCA	.	128	113	107	0	.	0	0	0	0	0
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12649333	12649333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOCD-93	NM_001146312	exon9	c.A1069G	p.T357A	GGACAAACTGGTG	.	98	94	75	0	.	0	0	0	0	0
TMEM97	27346	hgsc.bcm.edu;broad.mit.edu	37	17	26653807	26653807	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM97-90	NM_014573	exon3	c.519delA	p.R173fs	GAAAAGAAAAAAA	.	30	23	19	0	.	0	0	0	0	0
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33747391	33747391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLFN12-91	NM_018042	exon3	c.G1049A	p.S350N	TATGAACTGGAAA	.	73	59	87	0	.	1	0	1	0	0
C17orf66	256957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34191866	34191866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C17orf66-155	NM_152781	exon4	c.A349T	p.I117F	TTTTGATGTGGGT	.	241	215	233	0	.	0	0	0	0	0
KRTAP4-6	81871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39296288	39296288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_030976	exon1	c.G452A	p.R151H	GAGGGGCGGCAGC	.	197	81	69	2	.	0	0	0	0	0
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39463994	39463994	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001146182	exon1	c.C1512T	p.A504A	TGCTGCGGCCTCA	.	34	29	33	0	.	0	0	0	0	0
MPP3	4356	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41879215	41879215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPP3-91	NM_001932	exon20	c.G1612A	p.A538T	AGGCGGCAGAAGC	.	50	44	46	1	.	0	0	0	0	0
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43347830	43347830	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAP3K14-1453	.	.	.	.	GACACGCGGTGGA	.	143	70	66	0	.	7	0	7	0	0
HOXB13	10481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46805884	46805884	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXB13-514	NM_006361	exon1	c.72delG	p.G24fs	ATTCCGCCCCCCT	.	133	111	122	0	.	0	0	0	0	0
NGFR	4804	hgsc.bcm.edu	37	17	47583762	47583762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NGFR-947	NM_002507	exon3	c.G310A	p.D104N	GCCGACGACGCCG	.	13	11	0	0	.	0	0	0	0	0
PCTP	58488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53851112	53851112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCTP-91	NM_021213	exon4	c.C367G	p.L123V	CGAGACCTGGACA	.	158	143	137	0	.	4	0	4	0	0
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	54543810	54543810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANKFN1-136	NM_153228	exon14	c.G1660A	p.E554K	GAGGTGGAGATGC	.	191	10	168	0	.	0	0	0	0	0
PRKCA	5578	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	64731690	64731690	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRKCA-1404	NM_002737	exon10	c.C1140T	p.D380D	TGATGACGTGGAG	.	249	228	276	2	.	4	0	4	0	0
DNAH17	8632	bcgsc.ca	37	17	76497920	76497920	+	Missense_Mutation	SNP	C	C	A	rs690844	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAH17-142	NM_173628	exon34	c.G5226T	p.M1742I	GTTCCCCATGAGC	.	120	5	122	1	C|0.273;A|0.727	0	0	0	0	0
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78933974	78933974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPTOR-847	NM_020761	exon30	c.G3574A	p.V1192I	ATCCGCGTCTACG	.	211	44	203	0	.	13	9	4	0	0
RAB40B	10966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80616520	80616520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAB40B-227	NM_006822	exon5	c.A412G	p.T138A	GCTCCGTGGGCAC	.	80	56	63	1	.	6	0	6	0	0
MPPE1	65258	broad.mit.edu	37	18	11889445	11889445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPPE1-90	NM_001242904	exon4	c.C435A	p.H145Q	ACTTGGGTGTCTG	.	83	4	91	0	.	18	18	0	0	0
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19244151	19244151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABHD3-90	NM_138340	exon5	c.A596C	p.E199A	ACTGTCTCCAAGT	.	79	68	89	0	.	2	0	2	0	0
ZNF521	25925	broad.mit.edu;bcgsc.ca	37	18	22806811	22806811	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF521-275	NM_015461	exon4	c.G1071A	p.T357T	TGGAGTCGTACTG	.	73	5	68	1	.	13	13	0	0	0
SLC39A6	25800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33706547	33706547	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC39A6-92	NM_012319	exon2	c.C424T	p.R142X	CTTTTCGCTTATT	.	234	203	221	1	.	3	0	3	0	0
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34289245	34289245	+	Silent	SNP	C	C	T	rs141915411		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FHOD3-139	NM_025135	exon15	c.C1899T	p.N633N	GCAGAACGAGGGG	.	226	196	209	2	C|0.999;T|0.000	13	0	13	0	0
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44470593	44470593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PIAS2-662	NM_173206	exon2	c.449delA	p.N150fs	GGCAGATTTTTTA	.	277	241	260	0	.	0	0	0	0	0
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77893731	77893732	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADNP2-140	NM_014913	exon4	c.435_436del	p.145_146del	TGAAACTAAATCA	.	103	94	110	0	.	0	0	0	0	0
LMNB2	84823	ucsc.edu;bcgsc.ca	37	19	2438488	2438488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LMNB2-290	NM_032737	exon3	c.G443A	p.R148H	TTCACACGGCCCT	.	806	359	320	2	.	3	1	2	0	0
MFSD12	126321	broad.mit.edu	37	19	3547501	3547501	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001042680	exon5	c.C882A	p.S294S	GGTCTGGGACAGG	.	610	10	308	0	.	48	48	0	0	0
MFSD12	126321	hgsc.bcm.edu	37	19	3547981	3547981	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001042680	exon4	c.A702C	p.L234L	GTGGAATAGCAGT	.	11	9	2	0	.	47	29	18	0	0
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4409751	4409751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHAF1A-92	NM_005483	exon3	c.C955T	p.R319C	CCCCTCCGCAGAG	.	117	49	79	0	.	0	0	0	0	0
KDM4B	23030	hgsc.bcm.edu	37	19	5151503	5151503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KDM4B-226	NM_015015	exon23	c.G3272T	p.R1091L	AGGGCCGGCCCGG	.	43	5	9	0	.	27	27	0	0	0
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5831871	5831871	+	Silent	SNP	C	C	T	rs141754965		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FUT6-90	NM_000150	exon3	c.G708A	p.T236T	GGACAGCGTCTCC	.	663	282	325	1	C|1.000;T|0.000	0	0	0	0	0
PSPN	5623	bcgsc.ca	37	19	6375624	6375624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PSPN-91	NM_004158	exon2	c.C152T	p.T51I	CGGTGGGTGCCTG	.	407	200	132	4	.	6	4	2	0	0
VAV1	7409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6822269	6822269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VAV1-1276	NM_005428	exon5	c.G487A	p.V163M	GACTGCGTGGAGA	.	411	54	148	1	.	0	0	0	0	0
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu	37	19	7605851	7605851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNPLA6-47	NM_001166111	exon9	c.C865T	p.R289W	GCGGCCCGGGACT	.	203	14	40	0	.	10	10	0	0	0
TIMM44	10469	broad.mit.edu	37	19	7998852	7998852	+	Missense_Mutation	SNP	C	C	T	rs147925283	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TIMM44-91	NM_006351	exon6	c.G580A	p.V194I	CCAGGACGCTGTC	.	109	4	56	0	C|0.999;T|0.001	84	83	1	0	0
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8206917	8206917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN3-100	NM_032447	exon6	c.C646T	p.R216C	AGGCACGGCCCAC	.	163	50	99	0	.	0	0	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8587291	8587291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYO1F-93	NM_012335	exon27	c.G3190A	p.V1064M	CGTTCACGTTGAA	.	259	13	91	0	.	4	4	0	0	0
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10394443	10394443	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ICAM1-91	NM_000201	exon3	c.C618A	p.P206P	GGCCCCCTACCAG	.	100	39	57	0	.	2	2	0	0	0
S1PR5	53637	broad.mit.edu;bcgsc.ca	37	19	10624719	10624719	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	S1PR5-523	NM_030760	exon2	c.C969A	p.C323X	GCGTCCGCAGCAG	.	193	6	44	0	.	0	0	0	0	0
TMED1	11018	broad.mit.edu	37	19	10946806	10946806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMED1-155	NM_006858	exon1	c.T62G	p.V21G	CCTCCCACCTCCA	.	155	30	55	5	.	10	10	0	0	0
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14272167	14272167	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPHN1-523	NM_001008701	exon7	c.G1482A	p.Q494Q	GCCCTGCTGGGTG	.	142	64	34	0	.	4	1	3	0	0
CD97	976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14515325	14515325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CD97-570	NM_078481	exon13	c.G1580A	p.C527Y	GCCAATGCAGCCA	.	261	54	101	0	.	1	1	0	0	0
EMR2	30817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14854448	14854448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EMR2-524	NM_013447	exon19	c.T2332C	p.Y778H	GGCAGTACACCAG	.	454	87	245	0	.	0	0	0	0	0
AKAP8	10270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15484604	15484604	+	Missense_Mutation	SNP	G	G	A	rs140271912		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AKAP8-290	NM_005858	exon4	c.C364T	p.R122W	TCTCCCGGTCCTG	.	78	35	37	0	G|1.000;A|0.000	0	0	0	0	0
OR10H5	284433	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15905080	15905080	+	Silent	SNP	C	C	T	rs201176627		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	OR10H5-69	NM_001004466	exon1	c.C222T	p.T74T	CTACACCGTGGCC	.	766	330	338	3	C|0.999;T|0.001	0	0	0	0	0
SLC5A5	6528	broad.mit.edu;bcgsc.ca	37	19	17994831	17994831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC5A5-93	NM_000453	exon12	c.C1502T	p.A501V	TCCCTGCTAACGA	.	162	76	68	2	.	0	0	0	0	0
ARRDC2	27106	broad.mit.edu	37	19	18119374	18119374	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ARRDC2-91	NM_015683	exon1	c.C255T	p.R85R	CCACCGCGCCACG	.	30	4	16	0	.	12	10	2	0	0
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19243492	19243492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM161A-154	NM_001256766	exon4	c.G260T	p.C87F	AGGGGGCAGGTCT	.	119	20	59	0	.	152	122	30	0	0
SLC7A10	56301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33706703	33706703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC7A10-91	NM_019849	exon2	c.G328A	p.V110I	CTGTGACGTAGGC	.	158	36	85	0	.	0	0	0	0	0
COX6B1	1340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36145482	36145482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COX6B1-226	NM_001863	exon3	c.G116A	p.R39H	TCCACCGCTGTCA	.	301	57	167	0	.	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu	37	19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL4-697	NM_014727	exon27	c.5631delG	p.L1877fs	GCCCTTGGGGGGT	.	40	10	33	0	.	0	0	0	0	0
LRFN3	79414	hgsc.bcm.edu	37	19	36431134	36431134	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRFN3-90	NM_024509	exon2	c.C807T	p.L269L	CGACCTCGAGGCC	.	18	5	4	0	.	12	12	0	0	0
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37038306	37038306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF529-67	NM_001145649	exon6	c.A1154C	p.Q385P	ATTCTCTGATGAC	.	102	57	49	0	.	1	1	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38939333	38939333	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR1-100	NM_001042723	exon11	c.1002delC	p.G334fs	CATGGGCCCCCCT	.	344	136	166	0	.	0	0	0	0	0
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39018334	39018334	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR1-100	NM_000540	exon73	c.C10734T	p.G3578G	CCGGGGCGTCCCG	.	374	195	161	1	.	0	0	0	0	0
FBXO27	126433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39521937	39521937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO27-227	NM_178820	exon3	c.C388T	p.Q130X	CGTGTTGCACCAT	.	269	50	142	0	.	0	0	0	0	0
FCGBP	8857	ucsc.edu;bcgsc.ca	37	19	40362754	40362754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FCGBP-98	NM_003890	exon32	c.G15316A	p.V5106M	CGGCCACGCCAGC	.	509	241	172	3	.	2	1	1	0	0
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40900691	40900691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRX-92	NM_181882	exon7	c.G3568A	p.V1190M	GGGTCACCTGGGG	.	225	107	87	1	.	12	6	6	0	0
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42914911	42914913	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LIPE-154	NM_005357	exon2	c.965_967del	p.322_323del	GGCTCGAGAAGAA	.	82	70	51	0	.	0	0	0	0	0
PSG6	5675	hgsc.bcm.edu	37	19	43421937	43421937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PSG6-92	NM_001031850	exon1	c.C8T	p.P3L	GAGAGGGGTCCCA	.	65	5	27	0	.	0	0	0	0	0
NKPD1	284353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45655516	45655516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NKPD1-68	NM_198478	exon4	c.G2179A	p.A727T	AGTCGGCGCCCAG	.	165	27	34	0	.	0	0	0	0	0
ERCC1	2067	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45922382	45922382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERCC1-659	NM_001983	exon5	c.C499T	p.R167W	GGACCCGCAAGGC	.	73	25	40	1	.	81	59	22	0	0
GRIN2D	2906	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	48918195	48918195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRIN2D-156	NM_000836	exon6	c.C1487T	p.A496V	GGCTGGCGCATAC	.	335	136	160	0	.	0	0	0	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50156709	50156711	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SCAF1-68	NM_021228	exon7	c.3063_3065del	p.1021_1022del	TGGGGCGGAGGAG	.	86	37	33	1	.	0	0	0	0	0
MED25	81857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50333113	50333113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MED25-91	NM_030973	exon6	c.596delC	p.A199fs	AGGCAGCCCCCCC	.	240	29	122	0	.	0	0	0	0	0
PTOV1	53635	hgsc.bcm.edu;bcgsc.ca	37	19	50360301	50360303	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTOV1-226	NM_017432	exon6	c.628_630del	p.210_210del	TCGTCCAAGAAGA	.	337	144	163	1	.	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51051969	51051969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRRC4B-205	NM_001080457	exon2	c.G127A	p.V43M	ACGTCACGGCCAC	.	14	7	1	0	.	1	0	1	0	0
ZNF841	284371	broad.mit.edu;bcgsc.ca	37	19	52568564	52568564	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001136499	exon7	c.G2571A	p.A857A	CCCAAACGCCTTG	.	320	10	145	0	.	2	2	0	0	0
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53577421	53577421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF160-90	NM_001102603	exon6	c.G243A	p.T81T	TTCCGGCGTTCTT	.	175	83	85	0	.	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	92	3	43	0	.	0	0	0	0	0
ZNF444	55311	hgsc.bcm.edu	37	19	56658405	56658405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF444-90	NM_001253792	exon3	c.G125A	p.R42H	TGCTCCGCGCCCT	.	9	8	2	0	.	15	9	6	0	0
ZNF211	10520	hgsc.bcm.edu;bcgsc.ca	37	19	58153343	58153345	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	ATT	ATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF211-92	NM_001265597	exon5	c.1684_1686del	p.562_562del	AACCTCATTAAAC	.	213	104	99	0	.	0	0	0	0	0
TAF1B	9014	hgsc.bcm.edu;bcgsc.ca	37	2	10059788	10059788	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TAF1B-92	NM_005680	exon14	c.1404delA	p.G468fs	TGCTGGAAAAAAA	.	164	33	141	1	.	0	0	0	0	0
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10105471	10105471	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRHL1-92	NM_198182	exon8	c.C1071T	p.N357N	GTATAACGCCATT	.	73	67	74	0	.	0	0	0	0	0
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74779681	74779681	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LOXL3-226	NM_032603	exon2	c.G81A	p.P27P	AGGGGACGGAGAC	.	175	16	142	0	.	0	0	0	0	0
HK2	3099	ucsc.edu;bcgsc.ca	37	2	75105940	75105940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HK2-252	NM_000189	exon9	c.G1157A	p.C386Y	GCCTGTGCGCAGC	.	346	133	142	2	.	0	0	0	0	0
CAPG	822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85628351	85628351	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPG-204	NM_001256140	exon5	c.C453T	p.T151T	CCGCTCGGTGGCA	.	183	161	195	0	.	5	5	0	0	0
CAPG	822	ucsc.edu;bcgsc.ca	37	2	85628769	85628769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPG-204	NM_001256140	exon4	c.C234T	p.A78A	CAGCACGGCACAG	.	141	123	113	2	.	5	5	0	0	0
ZAP70	7535	broad.mit.edu	37	2	98354472	98354472	+	Silent	SNP	G	G	A	rs115143372	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZAP70-955	NM_001079	exon13	c.G1638A	p.P546P	AGGGCCGGAGGTC	.	194	4	223	0	G|0.999;A|0.001	0	0	0	0	0
NPHP1	4867	broad.mit.edu;bcgsc.ca	37	2	110962528	110962528	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NPHP1-92	NM_207181	exon1	c.G18A	p.Q6Q	ATCTCGCTGTCGT	.	183	62	89	2	.	8	5	3	0	0
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135738728	135738728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_025052	exon9	c.A3583G	p.M1195V	TTGGCATGAGCAT	.	56	51	48	0	.	0	0	0	0	0
PLA2R1	22925	bcgsc.ca	37	2	160869814	160869814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLA2R1-93	NM_001195641	exon10	c.G1624A	p.G542S	AATAACCGCTGGA	.	70	4	53	0	.	3	3	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190430180	190430180	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC40A1-91	NM_014585	exon6	c.C660T	p.Y220Y	CAGAACGTACTCC	.	130	106	114	0	.	0	0	0	0	0
ORMDL1	94101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190640321	190640321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ORMDL1-68	NM_016467	exon4	c.G296A	p.R99Q	AACTTCCGTGAAG	.	69	20	64	1	.	37	26	11	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	160	4	174	1	.	438	436	1	1	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	168	4	168	1	.	364	364	0	0	0
SPEG	10290	broad.mit.edu	37	2	220354177	220354177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPEG-383	NM_005876	exon36	c.A8437C	p.T2813P	GCCCCCACACCCC	.	28	3	26	2	.	0	0	0	0	0
DNAJB3	414061	hgsc.bcm.edu;bcgsc.ca	37	2	234652188	234652188	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001001394	exon1	c.375delG	p.G125fs	CTCTGACCCCCCC	.	74	61	117	0	.	0	0	0	0	0
SH3BP4	23677	broad.mit.edu	37	2	235949696	235949696	+	Missense_Mutation	SNP	G	G	A	rs199774203		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SH3BP4-94	NM_014521	exon4	c.G283A	p.A95T	TGGTACGCACACA	.	305	10	277	1	G|0.999;A|0.000	11	11	0	0	0
ANO7	50636	bcgsc.ca	37	2	242148703	242148703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANO7-92	NM_001001891	exon12	c.G1243A	p.G415S	CAGGCCGGCCGGC	.	63	4	62	0	.	0	0	0	0	0
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2637510	2637510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NOP56-92	NM_006392	exon10	c.A1250T	p.N417I	GAAAGAATCTGGA	.	304	138	128	0	.	101	56	45	0	0
VSX1	30813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25052585	25052585	+	Missense_Mutation	SNP	G	G	T	rs149938697	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VSX1-90	NM_001256272	exon5	c.C878A	p.P293Q	CACCACGGGGTCT	.	166	86	79	0	G|0.998;A|0.002	0	0	0	0	0
ID1	3397	hgsc.bcm.edu	37	20	30193226	30193226	+	Silent	SNP	C	C	G	rs11545368	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ID1-651	NM_002165	exon1	c.C36G	p.A12A	CGCCGCCGCGGGC	.	8	5	1	0	C|0.993;G|0.007	1	0	1	0	0
E2F1	1869	broad.mit.edu;bcgsc.ca	37	20	32266084	32266084	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	E2F1-838	NM_005225	exon4	c.C648T	p.S216S	CTGCTCGCTCTCC	.	369	10	168	0	.	22	22	0	0	0
GSS	2937	hgsc.bcm.edu	37	20	33519853	33519855	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSS-93	NM_000178	exon10	c.916_918del	p.306_306del	CTGCACCTTCTTA	.	550	257	247	4	.	0	0	0	0	0
MIR298	100126296	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57393302	57393302	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	.	.	.	.	AAAGCAGCAGGCT	.	350	160	202	1	.	0	0	0	0	0
NELFCD	51497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57568155	57568155	+	Silent	SNP	G	G	A	rs141996345	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_198976	exon11	c.G1386A	p.A462A	CCTGGCGTTGCTG	.	639	152	315	0	G|0.999;A|0.001	6	6	0	0	0
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57769225	57769225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF831-126	NM_178457	exon1	c.G3151A	p.A1051T	AGGGAGGCTACCT	.	139	67	73	1	.	0	0	0	0	0
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58342325	58342325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PHACTR3-93	NM_080672	exon5	c.C626A	p.A209D	CCTTAGCTGGGGC	.	357	23	170	0	.	0	0	0	0	0
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60966048	60966048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CABLES2-91	NM_031215	exon10	c.G1416T	p.R472S	GAGGCGCCTGTAA	.	239	125	112	1	.	1	0	1	0	0
COL20A1	57642	broad.mit.edu	37	20	61938844	61938844	+	Missense_Mutation	SNP	G	G	A	rs201827276		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COL20A1-90	NM_020882	exon6	c.G499A	p.G167S	CCAGCCGGCCCCC	.	129	4	36	0	.	0	0	0	0	0
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61944185	61944185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COL20A1-90	NM_020882	exon16	c.C1975T	p.P659S	GAGCTGCCAGGGG	.	276	121	137	1	.	0	0	0	0	0
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30701923	30701925	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BACH1-92	NM_206866	exon4	c.1685_1687del	p.562_563del	ATATTCGAAGAAG	.	232	107	100	0	.	0	0	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32638636	32638636	+	Missense_Mutation	SNP	G	G	A	rs202148756		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TIAM1-724	NM_003253	exon5	c.C653T	p.A218V	GGACTCGCCCGCG	.	145	72	70	0	G|0.999;A|0.001	0	0	0	0	0
UMODL1	89766	broad.mit.edu	37	21	43531700	43531700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UMODL1-93	NM_173568	exon11	c.C2368A	p.R790S	GCCACCCGTTCCA	.	225	5	134	0	.	0	0	0	0	0
CCT8L2	150160	ucsc.edu;bcgsc.ca	37	22	17072883	17072883	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCT8L2-69	NM_014406	exon1	c.C558T	p.H186H	GCAGGCGTGGGCC	.	180	166	146	2	.	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	62	14	61	0	.	0	0	0	0	0
RAB36	9609	bcgsc.ca	37	22	23503121	23503121	+	Silent	SNP	G	G	A	rs5759611	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAB36-228	NM_004914	exon10	c.G873A	p.S291S	GCAGTCGGTGCTG	.	301	8	245	1	G|0.776;A|0.224	5	5	0	0	0
MIF	4282	hgsc.bcm.edu	37	22	24237074	24237074	+	Missense_Mutation	SNP	C	C	T	rs182012324		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIF-514	NM_002415	exon2	c.C224T	p.S75F	ACCGCTCCTACAG	.	5	5	4	0	C|0.999;T|0.000	837	9	827	0	1
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	28501523	28501523	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001145418	exon8	c.G3051A	p.L1017L	GTACTGCAGGGCT	.	185	174	172	1	.	1	1	0	0	0
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29130427	29130427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHEK2-1515	NM_145862	exon2	c.C283T	p.R95X	ATAATCGAGCCCA	.	49	47	61	0	.	0	0	0	0	0
XBP1	7494	broad.mit.edu	37	22	29191569	29191569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XBP1-290	NM_005080	exon5	c.C751T	p.R251C	GATGACGTCCCCA	.	114	4	90	1	.	71	71	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29445345	29445345	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNRF3-69	NM_001206998	exon8	c.1176delC	p.N392fs	CGGCAACCCCGTC	.	165	146	117	0	.	0	0	0	0	0
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50319196	50319196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CRELD2-90	NM_001135101	exon10	c.G1147A	p.A383T	CCGCCGGCAGAGG	.	94	88	68	0	.	0	0	0	0	0
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50722344	50722344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon14	c.C2339T	p.A780V	CACCACGCACACC	.	88	75	34	0	.	24	0	24	0	0
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50722601	50722601	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon13	c.C2223T	p.Y741Y	CTTGACGTAGAGG	.	71	65	48	0	.	32	1	31	0	0
SCO2	9997	bcgsc.ca	37	22	50962208	50962208	+	Silent	SNP	T	T	G	rs12148	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SCO2-226	NM_001169111	exon2	c.A633C	p.A211A	GGGGCCTGCATTG	.	225	7	230	2	T|0.349;G|0.651	93	93	0	0	0
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9516182	9516182	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SETD5-70	NM_001080517	exon21	c.A3547T	p.K1183X	ATCCCCAAGGTCC	.	105	86	70	0	.	31	4	27	0	0
SLC6A11	6538	broad.mit.edu;bcgsc.ca	37	3	10858122	10858122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC6A11-132	NM_014229	exon1	c.G172A	p.E58K	AAGGTGGAGTTCG	.	291	10	172	0	.	0	0	0	0	0
STAC	6769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	36570404	36570406	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STAC-94	NM_003149	exon10	c.1037_1039del	p.346_347del	AAAATGAGAAGAT	.	80	75	85	0	.	0	0	0	0	0
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37042447	37042449	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLH1-2559	NM_000249	exon3	c.209_211del	p.70_71del	AACAGAAAGAAGA	.	61	51	65	0	.	0	0	0	0	0
XIRP1	165904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39230192	39230192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XIRP1-158	NM_001198621	exon2	c.G745A	p.A249T	GGATGGCGCCCTC	.	57	45	47	0	.	0	0	0	0	0
SEMA3G	56920	broad.mit.edu	37	3	52476810	52476810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SEMA3G-70	NM_020163	exon2	c.G229A	p.A77T	AGAGGGCGTCCAG	.	211	4	172	0	.	1	1	0	0	0
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	73432786	73432788	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PDZRN3-232	NM_015009	exon10	c.2929_2931del	p.977_977del	CTTCCTCTCCTCC	.	94	82	85	0	.	0	0	0	0	0
ITGB5	3693	broad.mit.edu;bcgsc.ca	37	3	124515279	124515279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ITGB5-227	NM_002213	exon10	c.G1649A	p.C550Y	TTGTCGCACTCAC	.	147	7	113	0	.	55	54	1	0	0
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	130159651	130159651	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_153264	exon35	c.6469delT	p.F2157fs	AAGCCATTTTTAT	.	77	33	54	0	.	0	0	0	0	0
SLC35G2	80723	hgsc.bcm.edu;broad.mit.edu	37	3	136573486	136573486	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_025246	exon2	c.184delA	p.K62fs	GAAATGAAAAAAA	.	52	45	48	0	.	0	0	0	0	0
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FXR1-153	NM_001013438	exon5	c.364delA	p.K122fs	ACTGTCAAAAAAA	.	75	60	54	0	.	0	0	0	0	0
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184299402	184299402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EPHB3-1455	NM_004443	exon16	c.C2989A	p.Q997K	CCTGTGCAGGTCT	.	124	107	130	0	.	2	1	1	0	0
FAM43A	131583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194407766	194407766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAM43A-90	NM_153690	exon1	c.A211G	p.T71A	ACTTACACCGTGC	.	351	310	279	1	.	4	4	0	0	0
MUC4	4585	bcgsc.ca	37	3	195505791	195505791	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.T12660A	p.G4220G	GGCGTGACCTGTG	.	326	34	283	4	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195505870	195505870	+	Missense_Mutation	SNP	G	G	A	rs201928034		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.C12581T	p.P4194L	GTGACAGGAAGAG	.	316	21	251	6	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510020	195510020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.A8431T	p.T2811S	GACCTGTGGACAC	.	96	27	276	5	.	0	0	0	0	0
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1991593	1991593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_005663	exon3	c.G419A	p.G140D	CACTCACCCACTG	.	237	107	109	0	.	0	0	0	0	0
TRMT44	152992	hgsc.bcm.edu;bcgsc.ca	37	4	8470030	8470032	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_152544	exon9	c.1884_1886del	p.628_629del	AAACACAAGAAGT	.	236	105	135	1	.	0	0	0	0	0
CPEB2	132864	hgsc.bcm.edu;broad.mit.edu	37	4	15067858	15067858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPEB2-91	NM_001177382	exon12	c.2959delT	p.F987fs	GCTCCCTTTTTTT	.	446	15	170	0	.	0	0	0	0	0
FAM200B	285550	broad.mit.edu	37	4	15689832	15689832	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001145191	exon2	c.1232delA	p.E411fs	TCATTGAAAAAAA	.	135	8	65	0	.	0	0	0	0	0
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	27000929	27000929	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STIM2-91	NM_001169118	exon5	c.G585A	p.Q195Q	ACTTCAGCTCAAG	.	144	62	59	0	.	9	7	2	0	0
TLR6	10333	hgsc.bcm.edu;bcgsc.ca	37	4	38830935	38830935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TLR6-524	NM_006068	exon2	c.160delA	p.T54fs	CTTTGGTTTTCAG	.	171	83	79	1	.	0	0	0	0	0
FRYL	285527	bcgsc.ca	37	4	48592687	48592687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FRYL-69	NM_015030	exon17	c.C1496A	p.A499E	ACTTTTGCTTCTT	.	58	4	34	0	.	0	0	0	0	0
UGT2B15	7366	hgsc.bcm.edu	37	4	69536320	69536320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UGT2B15-46	NM_001076	exon1	c.C17T	p.T6M	ACTGACGTCCATT	.	133	8	60	0	.	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662309	77662309	+	Silent	SNP	C	C	T	rs344143	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SHROOM3-93	NM_020859	exon5	c.C2983T	p.L995L	GGCGACCTGGCCA	.	10	10	0	0	C|0.604;T|0.396	3	0	3	0	0
PRKG2	5593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82126123	82126123	+	Missense_Mutation	SNP	G	G	A	rs187350442		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRKG2-524	NM_006259	exon1	c.C79T	p.R27W	TGTTCCGCAGAGC	.	295	139	137	2	G|0.999;A|0.001	0	0	0	0	0
UNC5C	8633	hgsc.bcm.edu;bcgsc.ca	37	4	96140294	96140294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UNC5C-94	NM_003728	exon9	c.1471delC	p.Q491fs	CATCTTGGGGGGT	.	450	214	149	0	.	0	0	0	0	0
AP1AR	55435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113189441	113189441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AP1AR-90	NM_018569	exon10	c.A785G	p.N262S	GGGAAAATGATTT	.	213	92	133	0	.	49	32	16	0	1
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114276759	114276759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANK2-583	NM_001148	exon38	c.G6985A	p.G2329S	TGCACAGGCAGCT	.	154	70	82	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126369791	126369791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAT4-108	NM_024582	exon9	c.7620delA	p.V2540fs	GCATGTAAAAGAT	.	259	115	105	0	.	0	0	0	0	0
NAA15	80155	hgsc.bcm.edu;bcgsc.ca	37	4	140291458	140291459	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NAA15-92	NM_057175	exon15	c.1847_1848del	p.616_616del	ATGCAGAAAAAGA	.	214	109	123	2	.	0	0	0	0	0
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142143548	142143548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF330-90	NM_014487	exon2	c.C23T	p.A8V	CTGGTGCGAGGAA	.	333	160	164	0	.	52	23	29	0	0
DCLK2	166614	bcgsc.ca	37	4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DCLK2-300	NM_001040260	exon1	c.203_205del	p.68_69del	GCTCGGAGAAGAA	.	665	0	297	4	.	0	0	0	0	0
TENM3	55714	hgsc.bcm.edu	37	4	183721231	183721231	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001080477	exon27	c.C7827T	p.Y2609Y	GCGCTACGGCATG	.	13	5	3	0	.	1	0	1	0	0
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185684335	185684335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACSL1-92	NM_001995	exon16	c.G1507A	p.E503K	CGCCCTCGGCAGC	.	72	66	72	0	.	13	0	13	0	0
DNAH5	1767	bcgsc.ca	37	5	13766210	13766210	+	Missense_Mutation	SNP	C	C	T	rs149452082	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAH5-182	NM_001369	exon59	c.G9976A	p.V3326I	GCAGTACGCAATC	.	192	114	97	2	C|1.000;A|0.000	0	0	0	0	0
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34998917	34998917	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AGXT2-94	NM_031900	exon14	c.G1452A	p.A484A	TGAGGGCGCAATG	.	100	40	65	0	.	0	0	0	0	0
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37348627	37348628	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUP155-205	NM_153485	exon9	c.974_975del	p.325_325del	AGCAGCAGAGACA	.	683	313	384	0	.	0	0	0	0	0
OSMR	9180	hgsc.bcm.edu;broad.mit.edu	37	5	38923329	38923329	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	OSMR-496	NM_003999	exon13	c.1843delA	p.K615fs	TTAGAGAAAAAAA	.	62	11	37	0	.	0	0	0	0	0
ANXA2R	389289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43039623	43039623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001014279	exon1	c.G526A	p.A176T	AGAACGCGGCAAA	.	219	119	112	0	.	5	3	1	1	0
SPATA9	83890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPATA9-90	NM_031952	exon5	c.G566T	p.C189F	TTTCTACAATTTT	.	62	29	44	0	.	1	0	1	0	0
MCC	4163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112720886	112720886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MCC-69	NM_001085377	exon2	c.G194A	p.R65H	AGCTGGCGACAGA	.	260	108	144	0	.	0	0	0	0	0
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	115335468	115335468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_173800	exon7	c.1384delT	p.F462fs	GAGATCTTTTTTT	.	200	92	102	0	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127728872	127728872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN2-146	NM_001999	exon10	c.C1421T	p.A474V	ACACCGGCTCCCC	.	126	61	61	0	.	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu	37	5	131931452	131931452	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAD50-229	NM_005732	exon13	c.2157delA	p.L719fs	AGAGCTAAAAAAA	.	74	24	40	1	.	0	0	0	0	0
PCDHA10	56139	bcgsc.ca	37	5	140237079	140237079	+	Silent	SNP	C	C	T	rs189056024	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCDHA10-99	NM_031859	exon1	c.C1446T	p.D482D	CGCGGACGCGCAG	.	987	432	247	4	C|0.999;A|0.000	2	0	2	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674716	167674716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001122679	exon27	c.G6745A	p.G2249R	AGACTCGGGGATG	.	190	36	102	0	.	0	0	0	0	0
ERGIC1	57222	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172315747	172315747	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERGIC1-93	NM_001031711	exon2	c.G66A	p.T22T	GCCAACGTACACC	.	346	133	165	1	.	62	34	28	0	0
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	175824972	175824972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CLTB-90	NM_001834	exon3	c.G311A	p.R104H	CACTTGCGGATGC	.	239	39	122	0	.	386	315	71	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176687121	176687121	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NSD1-188	NM_022455	exon14	c.C5098T	p.R1700X	GGCTGCCGAAATC	.	205	28	97	0	.	4	3	1	0	0
RASGEF1C	255426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179564923	179564923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGEF1C-228	NM_175062	exon2	c.G130T	p.E44X	GTGTTTCCAGGGA	.	388	66	170	0	.	0	0	0	0	0
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31857309	31857311	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EHMT2-91	NM_025256	exon8	c.933_935del	p.311_312del	TCTTCCTCTTCTT	.	52	10	74	0	.	0	0	0	0	0
TNXB	7148	hgsc.bcm.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNXB-90	NM_019105	exon3	c.2116_2117del	p.706_706del	CCCTCTACACACA	.	424	14	284	2	.	0	0	0	0	0
BTNL2	56244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32370751	32370751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BTNL2-90	NM_019602	exon3	c.G670A	p.V224I	TGAGGACGGGGTT	.	182	159	178	2	.	0	0	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32628022	32628022	+	Silent	SNP	A	A	G	rs1140347	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HLA-DQB1-22	NM_001243961	exon6	c.T801C	p.L267L	GTGCAGAAGCCCT	.	14	5	81	1	A|0.440;G|0.560	0	0	0	0	0
B3GALT4	8705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33245779	33245779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	B3GALT4-68	NM_003782	exon1	c.C583T	p.R195C	GGGGGCCGTTGGG	.	125	111	101	1	.	15	2	13	0	0
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33288228	33288232	+	Frame_Shift_Del	DEL	TCTTT	TCTTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCTTT	TCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DAXX-731	NM_001141970	exon4	c.1212_1216del	p.404_406del	CTCTTCTCTTTTT	.	48	41	62	0	.	0	0	0	0	0
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53519456	53519456	+	Silent	SNP	C	C	A	rs114605120	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHL31-23	NM_001003760	exon2	c.G615T	p.S205S	CTGATCCGATTCT	.	56	48	71	0	C|0.999;T|0.001	0	0	0	0	0
FAXC	84553	broad.mit.edu;bcgsc.ca	37	6	99771340	99771340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_032511	exon4	c.G803A	p.R268Q	AAAGACCGCATGT	.	88	81	110	2	.	0	0	0	0	0
MARCKS	4082	broad.mit.edu	37	6	114181210	114181210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MARCKS-90	NM_002356	exon2	c.454delA	p.K152fs	ACCCCGAAAAAAA	.	7	6	6	0	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152751308	152751308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYNE1-607	NM_033071	exon36	c.C4748T	p.A1583V	GGAACAGCAAGTT	.	119	109	137	0	.	0	0	0	0	0
PMS2	5395	broad.mit.edu;bcgsc.ca	37	7	6026767	6026767	+	Silent	SNP	G	G	A	rs111673299		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PMS2-1083	NM_000535	exon11	c.C1629T	p.D543D	AGAGTCGTCAGTT	.	161	74	69	2	A|1.000;|0.000	3	0	3	0	0
TMEM196	256130	hgsc.bcm.edu;broad.mit.edu	37	7	19769017	19769017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM196-22	NM_152774	exon2	c.192delA	p.K64fs	TCCTGATTTTTTT	.	94	40	42	0	.	0	0	0	0	0
TNS3	64759	hgsc.bcm.edu;bcgsc.ca	37	7	47385878	47385878	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNS3-94	NM_022748	exon18	c.2358delG	p.G786fs	CAGCTGCCCCCCA	.	169	82	72	1	.	0	0	0	0	0
ABCA13	154664	bcgsc.ca;mdanderson.org	37	7	48311657	48311657	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABCA13-521	NM_152701	exon17	c.C2394T	p.N798N	TGGCAACGAAGTG	.	103	43	27	1	.	0	0	0	0	0
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50129273	50129273	+	Missense_Mutation	SNP	G	G	A	rs200921057	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZPBP-90	NM_007009	exon2	c.C160T	p.R54C	TCAAGCGAAAAGC	.	202	86	122	0	G|0.999;T|0.001	0	0	0	0	0
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73944069	73944069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GTF2IRD1-94	NM_001199207	exon9	c.G1192A	p.A398T	GCGGAAGCCCTGG	.	112	24	50	0	.	0	0	0	0	0
DTX2	113878	broad.mit.edu	37	7	76112242	76112242	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DTX2-524	NM_001102596	exon2	c.686delA	p.H229fs	CCCAGCACCCCCC	.	1156	9	496	0	.	0	0	0	0	0
DTX2	113878	hgsc.bcm.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DTX2-524	NM_001102596	exon2	c.693delA	p.P231fs	CCCCCCACACAGG	.	1177	243	501	2	.	0	0	0	0	0
TMEM60	85025	hgsc.bcm.edu;broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM60-90	NM_032936	exon2	c.231delA	p.K77fs	CCAGGCTTTTTTT	.	127	51	61	0	.	0	0	0	0	0
ACHE	43	hgsc.bcm.edu	37	7	100491127	100491127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACHE-92	NM_000665	exon2	c.C727T	p.H243Y	GCAGGTGCATGCC	.	46	26	6	0	.	2	2	0	0	0
THAP5	168451	hgsc.bcm.edu;broad.mit.edu	37	7	108205526	108205526	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	THAP5-68	NM_001130475	exon3	c.297delA	p.K99fs	CTGGGATTTTTTT	.	71	25	39	0	.	0	0	0	0	0
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113519565	113519565	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PPP1R3A-832	NM_002711	exon4	c.G1582T	p.E528X	GTTTTTCATTAAC	.	61	10	53	0	.	0	0	0	0	0
KCP	375616	broad.mit.edu	37	7	128517759	128517759	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCP-68	.	.	.	.	GCCTCACGCCTGG	.	682	18	268	0	.	0	0	0	0	0
CPA1	1357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130020366	130020366	+	Missense_Mutation	SNP	G	G	A	rs145988366	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPA1-91	NM_001868	exon1	c.G5A	p.R2Q	GCATGCGGGGGTT	.	53	34	31	0	G|1.000;A|0.000	0	0	0	0	0
CPA1	1357	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130021521	130021521	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPA1-91	NM_001868	exon3	c.A198G	p.R66R	CGTCCGAGTGCCC	.	288	127	99	1	.	0	0	0	0	0
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	132959896	132959896	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXOC4-159	NM_021807	exon2	c.C246T	p.R82R	AGAGCGCATCACT	.	362	148	159	0	.	9	5	4	0	0
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139726084	139726084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PARP12-525	NM_022750	exon11	c.G1693A	p.G565S	TGGTGCCGTGGAA	.	167	90	86	0	.	32	18	14	0	0
MLL3	58508	broad.mit.edu;bcgsc.ca	37	7	151878058	151878058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL3-1398	NM_170606	exon36	c.G6887A	p.R2296H	GGATCACGGGCAG	.	424	11	174	0	.	3	3	0	0	0
MLL3	58508	broad.mit.edu	37	7	151879078	151879078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL3-1398	NM_170606	exon36	c.C5867T	p.S1956F	GTCGTGGAAGAAG	.	241	6	103	0	.	3	3	0	0	0
WDR60	55112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158738347	158738347	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR60-92	NM_018051	exon25	c.G3078A	p.A1026A	CAGGGCGTCTGGC	.	213	91	64	0	.	19	9	10	0	0
MYOM2	9172	bcgsc.ca	37	8	2021421	2021421	+	Missense_Mutation	SNP	G	G	T	rs2272720	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOM2-95	NM_003970	exon10	c.G961T	p.V321L	TCAGACGTGCTGT	.	154	5	100	0	G|0.687;T|0.313	0	0	0	0	0
DEFB135	613209	broad.mit.edu;bcgsc.ca	37	8	11839860	11839860	+	Missense_Mutation	SNP	G	G	A	rs141141605		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DEFB135-68	NM_001033017	exon1	c.G31A	p.V11M	GCCCTCGTGGTCC	.	83	75	88	2	G|0.999;A|0.001	0	0	0	0	0
HOOK3	84376	ucsc.edu	37	8	42819577	42819577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOOK3-154	NM_032410	exon9	c.C739A	p.L247I	TTGCAGCTCCAGA	.	45	4	47	0	.	2	2	0	0	0
ST18	9705	hgsc.bcm.edu;bcgsc.ca	37	8	53062482	53062482	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ST18-95	NM_014682	exon16	c.1862delA	p.N621fs	ATTCGATTTTTTT	.	175	148	140	1	.	0	0	0	0	0
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67511292	67511294	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYBL1-395	NM_001080416	exon4	c.282_284del	p.94_95del	CTCTGATCTTCTT	.	46	34	38	0	.	0	0	0	0	0
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	116	3	117	1	.	352	351	0	1	0
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103297940	103297940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UBR5-761	NM_015902	exon39	c.C5285A	p.A1762D	GCTGCAGCACTTG	.	137	123	103	1	.	1	0	1	0	0
TYRP1	7306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	12704553	12704553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TYRP1-226	NM_000550	exon6	c.A1109G	p.D370G	AGTATGACCCTGC	.	46	45	46	1	.	0	0	0	0	0
NUDT2	318	hgsc.bcm.edu	37	9	34339072	34339072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUDT2-90	NM_147173	exon3	c.G35T	p.R12L	TCTTCCGAAGATG	.	100	6	82	0	.	37	37	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu	37	9	36170452	36170452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCIN-92	NM_005893	exon1	c.C953A	p.A318E	GGGCAGCAGCACT	.	74	4	66	0	.	0	0	0	0	0
C9orf41	138199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77613553	77613553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf41-92	NM_152420	exon5	c.A871G	p.M291V	CTGTCATAGAAAA	.	240	108	138	0	.	7	5	2	0	0
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	91949587	91949587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SECISBP2-93	NM_024077	exon7	c.C1031T	p.A344V	CTGAAGCTTTATC	.	117	43	81	0	.	37	13	24	0	0
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123290085	123290085	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CDK5RAP2-229	NM_018249	exon10	c.998delA	p.K333fs	CATACCTTTTTTT	.	53	26	28	0	.	0	0	0	0	0
NR5A1	2516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127253373	127253375	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR5A1-186	NM_004959	exon6	c.1123_1125del	p.375_375del	GAAGAGGATGATG	.	240	106	98	0	.	0	0	0	0	0
GOLGA1	2800	ucsc.edu;bcgsc.ca	37	9	127674275	127674275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GOLGA1-91	NM_002077	exon11	c.G874A	p.V292I	TGATAACGTCTTC	.	214	117	106	2	.	11	7	4	0	0
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	128069806	128069806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GAPVD1-93	NM_015635	exon5	c.T1231C	p.Y411H	ATAACCTACAGTC	.	82	6	59	0	.	4	4	0	0	0
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu	37	9	131022875	131022875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GOLGA2-91	NM_004486	exon17	c.1546delG	p.E516fs	CCTGCTCCCCCCA	.	127	19	31	0	.	0	0	0	0	0
C9orf96	169436	hgsc.bcm.edu;bcgsc.ca	37	9	136262309	136262311	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf96-334	NM_153710	exon10	c.885_887del	p.295_296del	CATCACCTTCTTG	.	252	103	116	1	.	0	0	0	0	0
ADAMTS13	11093	broad.mit.edu;bcgsc.ca	37	9	136303424	136303424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADAMTS13-229	NM_139027	exon14	c.G1643A	p.C548Y	AGGTGTGTGGTGG	.	314	12	160	0	.	3	3	0	0	0
BRD3	8019	broad.mit.edu;bcgsc.ca	37	9	136918407	136918407	+	Missense_Mutation	SNP	C	C	T	rs200965087		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BRD3-377	NM_007371	exon2	c.G193A	p.A65T	TGATTGCGTCCAC	.	125	59	65	3	C|0.999;T|0.000	8	2	6	0	0
FCN2	2220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137777089	137777089	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FCN2-153	NM_004108	exon5	c.G306A	p.P102P	AGGCCCGCGTACC	.	181	98	94	1	.	0	0	0	0	0
PPP1R26	9858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138377451	138377451	+	Silent	SNP	C	C	T	rs138779417		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_014811	exon4	c.C1095T	p.D365D	CAGCGACGATGGC	.	331	159	171	1	C|1.000;T|0.000	10	8	2	0	0
KCNT1	57582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138662903	138662903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNT1-137	NM_020822	exon18	c.C1970T	p.P657L	AGGGTCCGGCCCG	.	258	139	94	1	.	1	0	1	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138669186	138669186	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNT1-137	NM_020822	exon21	c.C2352T	p.G784G	CCAGGGCTGCAAG	.	464	42	230	0	.	0	0	0	0	0
GRIN1	2902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140055846	140055846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRIN1-187	NM_001185091	exon11	c.G1508A	p.G503D	CAGATGGCAAGTT	.	674	100	269	1	.	0	0	0	0	0
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140099815	140099815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM203-22	NM_053045	exon1	c.G52T	p.E18X	AGATCTCGAAGGT	.	604	184	172	0	.	85	63	22	0	0
CACNA1B	774	broad.mit.edu;bcgsc.ca	37	9	141015261	141015261	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CACNA1B-138	NM_001243812	exon45	c.G6417A	p.P2139P	GCCCCCGAAGCCC	.	219	84	70	2	.	2	1	1	0	0
YY2	404281	broad.mit.edu	37	X	21875129	21875129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	YY2-193	NM_206923	exon1	c.T527G	p.V176G	TGCAGGTCAAAAC	.	104	3	67	1	.	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	53438821	53438823	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMC1A-232	NM_006306	exon7	c.1142_1144del	p.381_382del	TGCTGGCTTCTTC	.	123	109	63	0	.	0	0	0	0	0
FGD1	2245	broad.mit.edu	37	X	54497148	54497148	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FGD1-231	NM_004463	exon3	c.527delC	p.P176fs	TCCAGTGGGGGGG	.	27	7	8	0	.	0	0	0	0	0
CDX4	1046	broad.mit.edu;bcgsc.ca	37	X	72667191	72667191	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CDX4-130	NM_005193	exon1	c.C102T	p.G34G	AGGGGGCGGTGGG	.	107	95	42	2	.	0	0	0	0	0
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	96139817	96139817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPA4-227	NM_013347	exon1	c.A508G	p.K170E	CTGGATAAAGCCC	.	179	69	83	0	.	0	0	0	0	0
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100667308	100667308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HNRNPH2-130	NM_001032393	exon2	c.G332A	p.G111D	ACGATGGCTTCGT	.	357	328	184	0	.	94	6	88	0	0
RNF128	79589	hgsc.bcm.edu;broad.mit.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RNF128-227	NM_024539	exon1	c.24delT	p.S8fs	GTCCAGTTTTTTT	.	142	13	86	0	.	0	0	0	0	0
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110497633	110497633	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPN6-195	NM_014289	exon4	c.166-2A>G	.	ATGTCCTATGAAT	.	142	80	62	0	.	0	0	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118215302	118215302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1210-67	NM_020721	exon14	c.T5120A	p.I1707N	TGCGTGATTTCTG	.	81	78	34	0	.	0	0	0	0	0
GPC4	2239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132437297	132437297	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPC4-226	NM_001448	exon8	c.C1365T	p.S455S	TGGTTTGCTGGTG	.	140	126	71	0	.	22	0	22	0	0
SPANXB2	100133171	hgsc.bcm.edu	37	X	140085641	140085641	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_145664	exon2	c.136delA	p.K46fs	GCTCCTAAAAAAA	.	397	232	227	0	.	0	0	0	0	0
SPANXC	64663	broad.mit.edu;bcgsc.ca	37	X	140336572	140336572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPANXC-62	NM_022661	exon1	c.G19T	p.A7S	CGCCGGCACTGGA	.	466	12	262	1	.	0	0	0	0	0
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140994548	140994548	+	Missense_Mutation	SNP	A	A	G	rs58117541	bycluster;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGEC1-133	NM_005462	exon4	c.A1358G	p.Y453C	TCTCCTACACTTT	.	87	82	39	0	A|0.500;C|0.500	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu;bcgsc.ca	37	X	153042691	153042691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB3-130	NM_001163257	exon31	c.5025delG	p.E1675fs	CGAGGAGGGGGGG	.	106	90	44	1	.	0	0	0	0	0
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153225825	153225825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HCFC1-132	NM_005334	exon7	c.G945T	p.E315D	GTTGTCCTCCAGT	.	169	154	78	0	.	8	0	8	0	0
DKC1	1736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154004462	154004462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DKC1-227	NM_001363	exon14	c.C1339T	p.R447W	TCTCAGCGGAAGC	.	131	49	80	1	.	1	0	1	0	0
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222803533	222803534	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIA3-98	NM_198551	exon4	c.2971_2972insA	p.E991fs	ATAGCAGAAAAAA	.	119	96	141	0	.	0	0	0	0	0
TRIM21	6737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4409704	4409705	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIM21-229	NM_003141	exon4	c.561_562insA	p.N187fs	CAGGAAGTTTTTT	.	32	21	50	0	.	0	0	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108383875	108383876	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXPH5-95	NM_015065	exon6	c.2359_2360insCA	p.D787fs	ATTTATCTGTGTG	.	75	57	73	0	.	0	0	0	0	0
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12974637	12974638	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DDX47-226	NM_016355	exon4	c.419_420insA	p.A140fs	CCCTTGCAAAAAA	.	64	23	34	0	.	0	0	0	0	0
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123645709	123645710	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPHOSPH9-514	NM_022782	exon18	c.2899_2900insT	p.D967_E968delinsX	GTTCATCAAAAAA	.	67	32	35	0	.	0	0	0	0	0
ATP7B	540	hgsc.bcm.edu;bcgsc.ca	37	13	52548260	52548261	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP7B-92	NM_000053	exon2	c.1096_1097insTT	p.A366fs	TGCCGGCAATGGC	.	131	116	136	1	.	0	0	0	0	0
BRF1	2972	hgsc.bcm.edu;broad.mit.edu	37	14	105693009	105693010	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BRF1-155	NM_001519	exon8	c.877_878insC	p.S293fs	TGTACGAGGGGGG	.	75	12	45	0	.	0	0	0	0	0
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	90190208	90190209	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon7	c.1641_1642insG	p.G547fs	CCGCGGGCCCCCC	.	156	63	29	0	.	0	0	0	0	0
MYH11	4629	hgsc.bcm.edu	37	16	15802686	15802687	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYH11-666	NM_001040113	exon42	c.5820_5821insC	p.P1940fs	TTCCTGTGGGGGG	.	158	20	69	0	.	0	0	0	0	0
ATP2A1	487	hgsc.bcm.edu;bcgsc.ca	37	16	28913639	28913640	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP2A1-93	NM_004320	exon17	c.2456_2457insC	p.R819fs	TGGACCGCCCCCC	.	191	54	103	1	.	0	0	0	0	0
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28996226	28996227	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LAT-44	NM_001014989	exon1	c.44_45insG	p.L15fs	CCGTCTTGGGGGG	.	58	24	35	0	.	0	0	0	0	0
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	20308051	20308052	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF486-47	NM_052852	exon4	c.532_533insA	p.E178fs	CATACTGAAAAAA	.	98	44	87	0	.	0	0	0	0	0
RTN2	6253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45996512	45996513	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RTN2-93	NM_005619	exon5	c.939_940insC	p.P313fs	AGGAGTAGGGGGG	.	82	39	44	0	.	0	0	0	0	0
C1D	10438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68270087	68270088	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C1D-186	NM_001190263	exon6	c.360_361insA	p.N120fs	GAGGGCATTTTTT	.	104	35	111	0	.	0	0	0	0	0
SMYD5	10322	broad.mit.edu	37	2	73441441	73441442	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMYD5-226	NM_006062	exon1	c.47_48insGG	p.A16fs	GCGTGGCGGGCCG	.	152	11	62	0	.	0	0	0	0	0
ERCC3	2071	hgsc.bcm.edu;bcgsc.ca	37	2	128046943	128046944	+	In_Frame_Ins	INS	-	-	TCT	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERCC3-723	NM_000122	exon6	c.792_793insAGA	p.E264delinsEE	CTGTGTCTCTTCT	.	305	196	248	0	.	0	0	0	0	0
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu	37	20	30914608	30914609	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF3B-517	NM_004798	exon6	c.1783_1784insA	p.E595fs	CTGGAAGAAAAAA	.	49	14	22	0	.	0	0	0	0	0
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39713140	39713141	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TOP1-1148	NM_003286	exon8	c.546_547insA	p.D182fs	TAAAGATAAAAAA	.	76	24	68	0	.	0	0	0	0	0
RBM5	10181	hgsc.bcm.edu	37	3	50155887	50155888	+	Frame_Shift_Ins	INS	-	-	GA	rs112672304		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RBM5-278	NM_005778	exon25	c.2446_2447insGA	p.X816delinsX	ATGGAGTGAGAGA	.	59	21	72	0	-|0.500;GA|0.500	0	0	0	0	0
HERC6	55008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89311864	89311865	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HERC6-658	NM_017912	exon4	c.497_498insC	p.F166fs	AGGAGTTCCCCTC	.	165	76	80	0	.	0	0	0	0	0
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	64100133	64100134	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CWC27-90	NM_005869	exon10	c.858_859insA	p.A286fs	AATTGCCAAAAAA	.	68	33	28	0	.	0	0	0	0	0
PHACTR2	9749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	144086413	144086414	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PHACTR2-92	NM_001100164	exon6	c.710_711insA	p.S237fs	CTCATTCAAAAAA	.	25	20	24	0	.	0	0	0	0	0
ICA1	3382	hgsc.bcm.edu	37	7	8198250	8198251	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ICA1-515	NM_022307	exon7	c.612_613insA	p.N204fs	GTCAAAGTTTTTT	.	134	25	63	0	.	0	0	0	0	0
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98452922	98452923	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM130-91	NM_152913	exon5	c.744_745insT	p.L248fs	GGGCCCCAACACT	.	256	41	145	0	.	0	0	0	0	0
