Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACAT2	0	genome.wustl.edu	37	6	160189620	160189620	+	Silent	SNP	T	T	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160189620	160189620	T	A	SNP	ACAT2	ENST00000541436	human	ensembl	69_37n	+1	known	silent	c.537	p.G179	0.983	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT2	HGNC	ENSG00000120437	256	0	0.00	124	141	53.21	-	-	-
APBB1IP	0	genome.wustl.edu	37	10	26856303	26856304	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	10	26856303	26856304	-	C	INS	APBB1IP	ENST00000376236	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1887_1888	p.K631fs	0.012:0.995	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420	14	0	0.00	6	2	25.00	-	-	-
ARHGAP10	0	genome.wustl.edu	37	4	148985600	148985600	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	148985600	148985600	G	A	SNP	ARHGAP10	ENST00000507661	human	ensembl	69_37n	+1	putative	missense	c.1093	p.V365M	0.022	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARHGAP10	HGNC	ENSG00000071205	284	0	0.00	280	46	14.11	-	-	-
ATG2A	0	genome.wustl.edu	37	11	64666107	64666107	+	Splice_Site	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	64666107	64666107	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	69_37n	-1	known	splice_site	c.4677+1	e32+1	1.000	-	-	-	no_errors	ATG2A	HGNC	ENSG00000110046	62	0	0.00	22	12	35.29	-	-	-
BICD2	0	genome.wustl.edu	37	9	95481299	95481300	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	95481299	95481300	-	G	INS	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1628_1627	p.M543fs	1.000:1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	14	0	0.00	5	7	58.33	-	-	-
BICD2	0	genome.wustl.edu	37	9	95481305	95481306	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	95481305	95481306	-	G	INS	BICD2	ENST00000356884	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1622_1621	p.V541fs	1.000:1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963	15	0	0.00	6	7	53.85	-	-	-
BPIFB4	0	genome.wustl.edu	37	20	31671605	31671605	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	20	31671605	31671605	G	A	SNP	BPIFB4	ENST00000375483	human	ensembl	69_37n	+1	known	missense	c.602	p.G201E	0.997	smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191	173	0	0.00	33	20	37.74	-	-	-
C16orf58	0	genome.wustl.edu	37	16	31510720	31510720	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	31510720	31510720	G	-	DEL	C16orf58	ENST00000327237	human	ensembl	69_37n	-1	known	frame_shift_del	c.503	p.A168fs	1.000	pfam_DUF647	pfam_DUF647	-	no_errors	C16orf58	HGNC	ENSG00000140688	163	0	0.00	78	67	44.97	-	-	-
C8orf40	0	genome.wustl.edu	37	8	42407725	42407725	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	42407725	42407725	G	A	SNP	C8orf40	ENST00000414154	human	ensembl	69_37n	+1	known	missense	c.298	p.D100N	1.000	NULL	NULL	-	no_errors	C8orf40	HGNC	ENSG00000176209	152	0	0.00	559	179	24.25	-	-	-
CDC42BPG	0	genome.wustl.edu	37	11	64597451	64597451	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	64597451	64597451	G	-	DEL	CDC42BPG	ENST00000342711	human	ensembl	69_37n	-1	known	frame_shift_del	c.3459	p.S1154fs	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219	17	0	0.00	3	4	57.14	-	-	-
CELSR1	0	genome.wustl.edu	37	22	46929574	46929575	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	22	46929574	46929575	-	C	INS	CELSR1	ENST00000262738	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3494_3493	p.D1165fs	1.000:1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	16	0	0.00	4	3	42.86	-	-	-
CENPJ	0	genome.wustl.edu	37	13	25480533	25480533	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	13	25480533	25480533	T	-	DEL	CENPJ	ENST00000381884	human	ensembl	69_37n	-1	known	frame_shift_del	c.1643	p.E548fs	0.001	NULL	pfam_Tcp10/CenJ_C	-	no_errors	CENPJ	HGNC	ENSG00000151849	118	0	0.00	61	25	28.74	-	-	-
CLECL1	0	genome.wustl.edu	37	12	9885557	9885558	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	9885557	9885558	-	A	INS	CLECL1	ENST00000327839	human	ensembl	69_37n	-1	known	frame_shift_ins	c.304_303	p.L101fs	0.003:0.002	NULL	superfamily_C-type_lectin_fold	-	no_errors	CLECL1	HGNC	ENSG00000184293	68	0	0.00	74	10	11.90	-	-	-
CRY2	0	genome.wustl.edu	37	11	45882531	45882531	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	45882531	45882531	G	A	SNP	CRY2	ENST00000443527	human	ensembl	69_37n	+1	known	silent	c.663	p.E221	1.000	superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671	96	0	0.00	32	18	36.00	-	-	-
DCAF4L2	0	genome.wustl.edu	37	8	88885215	88885215	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	88885215	88885215	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	69_37n	-1	known	missense	c.985	p.V329M	0.993	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	175	0	0.00	103	241	70.06	-	-	-
DDIT4L	0	genome.wustl.edu	37	4	101108852	101108852	+	Silent	SNP	T	T	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	101108852	101108852	T	C	SNP	DDIT4L	ENST00000273990	human	ensembl	69_37n	-1	known	silent	c.564	p.T188	0.999	NULL	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358	36	0	0.00	23	20	46.51	-	-	-
ECH1	0	genome.wustl.edu	37	19	39306943	39306943	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	39306943	39306943	G	-	DEL	ECH1	ENST00000221418	human	ensembl	69_37n	-1	known	frame_shift_del	c.712	p.L238fs	0.998	pfam_Crotonase_core	pfam_Crotonase_core	-	no_errors	ECH1	HGNC	ENSG00000104823	113	0	0.00	31	15	31.25	-	-	-
EML6	0	genome.wustl.edu	37	2	55119763	55119763	+	Silent	SNP	G	G	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	55119763	55119763	G	T	SNP	EML6	ENST00000356458	human	ensembl	69_37n	+1	novel	silent	c.2712	p.G904	0.997	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595	274	0	0.00	310	49	13.65	-	-	-
EML6	0	genome.wustl.edu	37	2	55177837	55177838	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	55177837	55177838	-	C	INS	EML6	ENST00000356458	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.4134_4135	p.N1378fs	0.999:1.000	pfam_HELP	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595	49	0	0.00	66	69	51.11	-	-	-
EP400	0	genome.wustl.edu	37	12	132551918	132551919	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	132551918	132551919	-	T	INS	EP400	ENST00000333577	human	ensembl	69_37n	+1	known	frame_shift_ins	c.8869_8870	p.A2958fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	48	0	0.00	16	3	15.79	-	-	-
FFAR1	0	genome.wustl.edu	37	19	35843061	35843061	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	35843061	35843061	G	A	SNP	FFAR1	ENST00000246553	human	ensembl	69_37n	+1	known	missense	c.607	p.V203M	0.998	pfam_7TM_GPCR_Rhodpsn,prints_GPR40-rel_recept,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_GPR40_recept_FA,prints_GPR40-rel_recept,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	FFAR1	HGNC	ENSG00000126266	35	0	0.00	0	7	100.00	-	-	-
FMO5	0	genome.wustl.edu	37	1	146680607	146680607	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	146680607	146680607	G	T	SNP	FMO5	ENST00000254090	human	ensembl	69_37n	-1	known	missense	c.637	p.L213I	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781	97	0	0.00	56	57	50.44	-	-	-
GPR98	0	genome.wustl.edu	37	5	90052316	90052316	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	90052316	90052316	G	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	nonsense	c.11626	p.E3876*	0.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	198	0	0.00	71	86	54.78	-	-	-
GRIN1	0	genome.wustl.edu	37	9	140052856	140052856	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	140052856	140052856	G	C	SNP	GRIN1	ENST00000371561	human	ensembl	69_37n	+1	known	missense	c.994	p.D332H	0.966	pfam_ANF_lig-bd_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884	26	0	0.00	1	6	85.71	-	-	-
GYLTL1B	0	genome.wustl.edu	37	11	45945095	45945095	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	45945095	45945095	G	-	DEL	GYLTL1B	ENST00000325468	human	ensembl	69_37n	+1	known	frame_shift_del	c.357	p.M119fs	0.970	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905	35	0	0.00	11	16	59.26	-	-	-
HDLBP	0	genome.wustl.edu	37	2	242202140	242202140	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	242202140	242202140	T	C	SNP	HDLBP	ENST00000310931	human	ensembl	69_37n	-1	known	missense	c.436	p.R146G	0.030	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677	281	0	0.00	129	77	37.38	-	-	-
HELZ	0	genome.wustl.edu	37	17	65184713	65184713	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	65184713	65184713	C	T	SNP	HELZ	ENST00000358691	human	ensembl	69_37n	-1	known	missense	c.884	p.R295H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265	57	0	0.00	14	50	78.12	-	-	-
IDH3G	0	genome.wustl.edu	37	X	153055671	153055671	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	153055671	153055671	A	G	SNP	IDH3G	ENST00000217901	human	ensembl	69_37n	-1	known	missense	c.212	p.L71P	0.943	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829	46	0	0.00	15	9	37.50	-	-	-
IGF2R	0	genome.wustl.edu	37	6	160489290	160489290	+	Silent	SNP	T	T	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	6	160489290	160489290	T	C	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	+1	known	silent	c.4125	p.A1375	1.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	102	1	0.97	63	10	13.70	-	-	-
ISLR2	0	genome.wustl.edu	37	15	74425224	74425224	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	74425224	74425224	T	-	DEL	ISLR2	ENST00000361742	human	ensembl	69_37n	+1	known	frame_shift_del	c.129	p.E44fs	0.973	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like	-	no_errors	ISLR2	HGNC	ENSG00000167178	109	0	0.00	42	18	30.00	-	-	-
KATNB1	0	genome.wustl.edu	37	16	57790846	57790847	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	57790846	57790847	-	G	INS	KATNB1	ENST00000379661	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1956_1957	p.S652fs	0.868:0.394	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854	8	0	0.00	3	7	70.00	-	-	-
KCNA5	0	genome.wustl.edu	37	12	5153647	5153647	+	Silent	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	5153647	5153647	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	69_37n	+1	known	silent	c.334	p.L112	0.003	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	31	0	0.00	8	9	52.94	-	-	-
KIAA2026	0	genome.wustl.edu	37	9	6007235	6007235	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	6007235	6007235	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	silent	c.553	p.L185	1.000	superfamily_Bromodomain	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	34	0	0.00	3	10	76.92	-	-	-
LRP12	0	genome.wustl.edu	37	8	105503535	105503535	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	105503535	105503535	G	A	SNP	LRP12	ENST00000424843	human	ensembl	69_37n	-1	known	missense	c.1889	p.S630F	1.000	NULL	pfam_CUB,pfam_LDrepeatLR_classA_rpt,superfamily_CUB,superfamily_LDrepeatLR_classA_rpt,smart_CUB,smart_LDrepeatLR_classA_rpt,pfscan_CUB,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	168	0	0.00	306	64	17.30	-	-	-
MAML3	0	genome.wustl.edu	37	4	140811603	140811603	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	140811603	140811603	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	silent	c.987	p.F329	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	388	0	0.00	259	40	13.38	-	-	-
MKI67	0	genome.wustl.edu	37	10	129921415	129921415	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	10	129921415	129921415	G	A	SNP	MKI67	ENST00000368654	human	ensembl	69_37n	-1	known	silent	c.111	p.I37	0.933	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	136	0	0.00	64	48	42.86	-	-	-
MNAT1	0	genome.wustl.edu	37	14	61285489	61285489	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	61285489	61285489	G	C	SNP	MNAT1	ENST00000261245	human	ensembl	69_37n	+1	known	missense	c.611	p.R204T	1.000	pirsf_MAT1_metazoa,pfam_Cdk-activating_kinase_MAT1_cen,tigrfam_MAT1	pirsf_MAT1_metazoa,pfam_Cdk-activating_kinase_MAT1_cen,smart_Znf_RING,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING,tigrfam_MAT1	-	no_errors	MNAT1	HGNC	ENSG00000020426	192	0	0.00	244	37	13.17	-	-	-
MUC16	0	genome.wustl.edu	37	19	9084121	9084121	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	9084121	9084121	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.7694	p.T2565M	0.183	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	738	1	0.14	606	236	28.03	-	-	-
MYT1L	0	genome.wustl.edu	37	2	1843052	1843052	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	1843052	1843052	C	G	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.2949	p.K983N	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	33	0	0.00	53	11	17.19	-	-	-
NARFL	0	genome.wustl.edu	37	16	787259	787260	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	787259	787260	-	C	INS	NARFL	ENST00000251588	human	ensembl	69_37n	-1	known	frame_shift_ins	c.233_232	p.I78fs	1.000:1.000	superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245	16	0	0.00	11	10	47.62	-	-	-
NAT8	0	genome.wustl.edu	37	2	73868674	73868674	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	73868674	73868674	G	T	SNP	NAT8	ENST00000272425	human	ensembl	69_37n	-1	known	missense	c.82	p.H28N	0.987	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035	94	0	0.00	63	14	18.18	-	-	-
NUDT14	0	genome.wustl.edu	37	14	105639485	105639485	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	105639485	105639485	A	-	DEL	NUDT14	ENST00000392568	human	ensembl	69_37n	-1	known	frame_shift_del	c.542	p.V181fs	0.975	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,tigrfam_NDP_pyrophosphatase	-	no_errors	NUDT14	HGNC	ENSG00000183828	8	0	0.00	5	8	61.54	-	-	-
NXF3	0	genome.wustl.edu	37	X	102339332	102339332	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	102339332	102339332	G	C	SNP	NXF3	ENST00000395065	human	ensembl	69_37n	-1	known	missense	c.289	p.P97A	0.143	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	362	0	0.00	173	91	34.34	-	-	-
OR5A1	0	genome.wustl.edu	37	11	59211431	59211431	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	59211431	59211431	C	T	SNP	OR5A1	ENST00000302030	human	ensembl	69_37n	+1	known	nonsense	c.790	p.R264*	0.337	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5A1	HGNC	ENSG00000172320	522	0	0.00	284	244	46.12	-	-	-
PDE6A	0	genome.wustl.edu	37	5	149310672	149310672	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	149310672	149310672	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	69_37n	-1	known	silent	c.777	p.F259	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	199	0	0.00	53	58	52.25	-	-	-
PDHA1	0	genome.wustl.edu	37	X	19371264	19371264	+	Silent	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	19371264	19371264	C	T	SNP	PDHA1	ENST00000379806	human	ensembl	69_37n	+1	known	silent	c.597	p.Y199	0.996	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828	446	0	0.00	268	75	21.80	-	-	-
PIF1	0	genome.wustl.edu	37	15	65110250	65110251	+	In_Frame_Ins	INS	-	-	GAA			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	65110250	65110251	-	GAA	INS	PIF1	ENST00000333425	human	ensembl	69_37n	-1	known	in_frame_ins	c.1569_1568	p.524in_frame_insS	1.000:1.000	pfam_DNA_helicase_PIF1	pfam_DNA_helicase_PIF1,pfam_DNA_helicase	-	no_errors	PIF1	HGNC	ENSG00000140451	104	0	0.00	47	32	40.51	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	106	0	0.00	144	72	33.33	-	-	-
PLCL2	0	genome.wustl.edu	37	3	17053177	17053177	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	17053177	17053177	A	T	SNP	PLCL2	ENST00000418129	human	ensembl	69_37n	+1	known	missense	c.1961	p.D654V	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822	171	0	0.00	99	102	50.75	-	-	-
PLEKHG2	0	genome.wustl.edu	37	19	39905655	39905656	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	19	39905655	39905656	-	C	INS	PLEKHG2	ENST00000409794	human	ensembl	69_37n	+1	known	frame_shift_ins	c.133_134	p.R47fs	1.000:1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	15	0	0.00	6	3	33.33	-	-	-
PRRT4	0	genome.wustl.edu	37	7	127999474	127999474	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	127999474	127999474	G	A	SNP	PRRT4	ENST00000446477	human	ensembl	69_37n	-1	known	missense	c.572	p.T191M	0.973	NULL	NULL	-	no_errors	PRRT4	HGNC	ENSG00000224940	83	0	0.00	21	17	44.74	-	-	-
RNF133	0	genome.wustl.edu	37	7	122338268	122338268	+	Silent	SNP	T	T	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	122338268	122338268	T	G	SNP	RNF133	ENST00000340112	human	ensembl	69_37n	-1	known	silent	c.705	p.G235	0.025	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF133	HGNC	ENSG00000188050	212	0	0.00	149	99	39.92	-	-	-
SALL1	0	genome.wustl.edu	37	16	51174941	51174941	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	51174941	51174941	C	T	SNP	SALL1	ENST00000251020	human	ensembl	69_37n	-1	known	missense	c.1192	p.A398T	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	246	1	0.40	217	26	10.66	-	-	-
SHANK2	0	genome.wustl.edu	37	11	70332712	70332713	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	70332712	70332713	-	A	INS	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3689_3688	p.E1230fs	1.000:1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	43	0	0.00	20	56	73.68	-	-	-
SHANK2	0	genome.wustl.edu	37	11	70332718	70332718	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	11	70332718	70332718	A	-	DEL	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	frame_shift_del	c.3683	p.M1228fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	42	0	0.00	15	50	76.92	-	-	-
SLC7A3	0	genome.wustl.edu	37	X	70149701	70149701	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	70149701	70149701	G	A	SNP	SLC7A3	ENST00000298085	human	ensembl	69_37n	-1	known	silent	c.147	p.G49	0.540	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349	108	0	0.00	40	16	27.12	-	-	-
SNORD18A	0	genome.wustl.edu	37	15	66795596	66795596	+	RNA	SNP	G	G	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	15	66795596	66795596	G	C	SNP	SNORD18A	ENST00000363753	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.873	-	-	-	no_errors	SNORD18A	HGNC	ENSG00000200623	112	0	0.00	44	28	38.89	-	-	-
SPAG17	0	genome.wustl.edu	37	1	118624074	118624074	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	118624074	118624074	T	G	SNP	SPAG17	ENST00000336338	human	ensembl	69_37n	-1	known	missense	c.1954	p.M652L	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761	240	0	0.00	224	32	12.50	-	-	-
TGFBI	0	genome.wustl.edu	37	5	135396550	135396550	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	5	135396550	135396550	G	A	SNP	TGFBI	ENST00000305126	human	ensembl	69_37n	+1	known	missense	c.1831	p.E611K	0.997	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	130	0	0.00	87	12	12.12	-	-	-
TGM1	0	genome.wustl.edu	37	14	24724646	24724646	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	14	24724646	24724646	G	A	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	silent	c.1569	p.I523	0.920	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	86	0	0.00	40	19	32.20	-	-	-
TIE1	0	genome.wustl.edu	37	1	43783620	43783620	+	Silent	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	1	43783620	43783620	G	A	SNP	TIE1	ENST00000372476	human	ensembl	69_37n	+1	known	silent	c.2799	p.R933	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EGF-like,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	80	0	0.00	54	16	22.86	-	-	-
TMEM18	0	genome.wustl.edu	37	2	676235	676236	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	676235	676236	-	C	INS	TMEM18	ENST00000432667	human	ensembl	69_37n	-1	known	frame_shift_ins	c.61_60	p.Q20fs	0.008:0.023	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	35	0	0.00	4	3	42.86	-	-	-
TMEM214	0	genome.wustl.edu	37	2	27258528	27258528	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	27258528	27258528	C	-	DEL	TMEM214	ENST00000238788	human	ensembl	69_37n	+1	known	frame_shift_del	c.569	p.A190fs	0.007	NULL	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	288	0	0.00	134	92	39.83	-	-	-
TMEM214	0	genome.wustl.edu	37	2	27258530	27258531	+	In_Frame_Ins	INS	-	-	TGT			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	2	27258530	27258531	-	TGT	INS	TMEM214	ENST00000238788	human	ensembl	69_37n	+1	known	in_frame_ins	c.571_572	p.G191in_frame_insVW	0.367:0.403	NULL	pfam_DUF2359_TMEM214	-	no_errors	TMEM214	HGNC	ENSG00000119777	288	0	0.00	134	92	40.71	-	-	-
TP53	0	genome.wustl.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	17	7576855	7576855	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.991	p.Q331*	0.999	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	575	0	0.00	50	168	77.06	-	-	-
TXK	0	genome.wustl.edu	37	4	48076033	48076033	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	48076033	48076033	C	T	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	missense	c.1276	p.A426T	0.898	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	118	0	0.00	153	28	15.47	-	-	-
UBC	0	genome.wustl.edu	37	12	125396685	125396686	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	12	125396685	125396686	-	G	INS	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1633_1632	p.I544fs	1.000:1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	63	0	0.00	7	4	36.36	-	-	-
UMOD	0	genome.wustl.edu	37	16	20357504	20357504	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	16	20357504	20357504	C	A	SNP	UMOD	ENST00000424589	human	ensembl	69_37n	-1	known	missense	c.1225	p.D409Y	0.826	pfam_Zona_pellucida_Endoglin/CD105,smart_Zona_pellucida_Endoglin/CD105,pfscan_Zona_pellucida_Endoglin/CD105	pfam_Zona_pellucida_Endoglin/CD105,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Zona_pellucida_Endoglin/CD105,pfscan_EG-like_dom,pfscan_Zona_pellucida_Endoglin/CD105,prints_Endoglin/CD105_subgr	-	no_errors	UMOD	HGNC	ENSG00000169344	69	0	0.00	36	5	12.20	-	-	-
UNC13B	0	genome.wustl.edu	37	9	35231138	35231138	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	9	35231138	35231138	C	T	SNP	UNC13B	ENST00000396787	human	ensembl	69_37n	+1	known	missense	c.74	p.T25I	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	249	0	0.00	170	133	43.89	-	-	-
UPF3A	0	genome.wustl.edu	37	13	115048384	115048385	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	13	115048384	115048385	-	C	INS	UPF3A	ENST00000375299	human	ensembl	69_37n	+1	known	frame_shift_ins	c.387_388	p.R129fs	0.983:1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062	190	0	0.00	111	55	33.13	-	-	-
USP53	0	genome.wustl.edu	37	4	120181041	120181041	+	Silent	SNP	A	A	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	4	120181041	120181041	A	G	SNP	USP53	ENST00000274030	human	ensembl	69_37n	+1	known	silent	c.636	p.L212	0.897	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP53	HGNC	ENSG00000145390	178	0	0.00	159	119	42.81	-	-	-
XCR1	0	genome.wustl.edu	37	3	46063416	46063416	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	3	46063416	46063416	C	G	SNP	XCR1	ENST00000309285	human	ensembl	69_37n	-1	known	missense	c.24	p.E8D	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_lymphotactin_XCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578	191	0	0.00	10	40	78.43	-	-	-
YTHDF3	0	genome.wustl.edu	37	8	64087954	64087954	+	RNA	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	8	64087954	64087954	C	T	SNP	YTHDF3	ENST00000339066	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728	154	0	0.00	218	42	16.15	-	-	-
ZCCHC12	0	genome.wustl.edu	37	X	117959686	117959686	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	X	117959686	117959686	T	-	DEL	ZCCHC12	ENST00000310164	human	ensembl	69_37n	+1	known	frame_shift_del	c.479	p.Q161fs	0.986	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	156	0	0.00	118	135	53.36	-	-	-
ZSCAN21	0	genome.wustl.edu	37	7	99662245	99662245	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A0D1-01A-11W-A050-09	TCGA-A2-A0D1-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a762809c-15c9-485e-ad7a-ef28427750e9	12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9	7	99662245	99662245	C	T	SNP	ZSCAN21	ENST00000543588	human	ensembl	69_37n	+1	known	nonsense	c.1324	p.Q442*	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	185	0	0.00	148	29	16.38	-	-	-
