Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA9	0	genome.wustl.edu	37	17	67017883	67017883	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	67017883	67017883	C	G	SNP	ABCA9	ENST00000340001	human	ensembl	69_37n	-1	known	missense	c.2401	p.D801H	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	49	0	0.00	36	90	71.43	-	-	-
ABHD6	0	genome.wustl.edu	37	3	58260470	58260470	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	58260470	58260470	C	-	DEL	ABHD6	ENST00000295962	human	ensembl	69_37n	+1	known	frame_shift_del	c.609	p.P204fs	1.000	pfam_AB_hydrolase_1,pfam_Ndr	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686	49	0	0.00	28	48	63.16	-	-	-
ACTL6B	0	genome.wustl.edu	37	7	100245130	100245131	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	7	100245130	100245131	-	G	INS	ACTL6B	ENST00000160382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.696_695	p.N233fs	1.000:1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL6B	HGNC	ENSG00000077080	28	0	0.00	45	7	13.46	-	-	-
AGAP6	0	genome.wustl.edu	37	10	51769058	51769058	+	Silent	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	10	51769058	51769058	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	69_37n	+1	known	silent	c.1173	p.P391	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149	21	0	0.00	8	11	47.83	-	-	-
ANTXR2	0	genome.wustl.edu	37	4	80905985	80905986	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	80905985	80905986	-	G	INS	ANTXR2	ENST00000307333	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1074_1073	p.A359fs	0.994:0.992	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297	188	0	0.00	264	33	11.11	-	-	-
ATP2A1	0	genome.wustl.edu	37	16	28909621	28909621	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	16	28909621	28909621	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	+1	known	missense	c.1613	p.T538M	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	52	0	0.00	43	37	46.25	-	-	-
B4GALNT1	0	genome.wustl.edu	37	12	58025102	58025103	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	12	58025102	58025103	-	C	INS	B4GALNT1	ENST00000341156	human	ensembl	69_37n	-1	known	frame_shift_ins	c.264_263	p.L89fs	0.004:0.099	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	39	0	0.00	63	8	11.27	-	-	-
BCL9L	0	genome.wustl.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	11	118770651	118770652	-	G	INS	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3381_3380	p.P1128fs	0.988:0.996	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	49	0	0.00	57	9	13.64	-	-	-
C14orf180	0	genome.wustl.edu	37	14	105054102	105054103	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	14	105054102	105054103	-	C	INS	C14orf180	ENST00000410013	human	ensembl	69_37n	+1	known	frame_shift_ins	c.128_129	p.S46fs	0.035:0.048	NULL	NULL	-	no_errors	C14orf180	HGNC	ENSG00000184601	36	0	0.00	11	2	15.38	-	-	-
CHRNB2	0	genome.wustl.edu	37	1	154543819	154543819	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	1	154543819	154543819	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	69_37n	+1	known	missense	c.520	p.R174C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716	56	0	0.00	74	22	22.92	-	-	-
CYP2D6	0	genome.wustl.edu	37	22	42524213	42524214	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	22	42524213	42524214	-	G	INS	CYP2D6	ENST00000360608	human	ensembl	69_37n	-1	known	frame_shift_ins	c.806_805	p.R269fs	0.996:0.947	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197	32	0	0.00	29	5	14.71	-	-	-
DENND4C	0	genome.wustl.edu	37	9	19296154	19296154	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	9	19296154	19296154	C	T	SNP	DENND4C	ENST00000380437	human	ensembl	69_37n	+1	known	missense	c.242	p.S81L	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	83	0	0.00	334	233	41.02	-	-	-
EGR1	0	genome.wustl.edu	37	5	137803131	137803132	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	5	137803131	137803132	-	C	INS	EGR1	ENST00000239938	human	ensembl	69_37n	+1	known	frame_shift_ins	c.993_994	p.H333fs	0.502:1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	64	0	0.00	20	4	16.67	-	-	-
EIF2C1	0	genome.wustl.edu	37	1	36381040	36381040	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	1	36381040	36381040	A	G	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	+1	known	missense	c.1925	p.Y642C	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	43	0	0.00	163	100	37.88	-	-	-
ETV5	0	genome.wustl.edu	37	3	185823093	185823093	+	Splice_Site	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	185823093	185823093	C	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	splice_site	c.358+1	e5+1	1.000	-	-	-	no_errors	ETV5	HGNC	ENSG00000244405	84	0	0.00	80	46	36.51	-	-	-
EYA1	0	genome.wustl.edu	37	8	72211886	72211886	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	8	72211886	72211886	T	C	SNP	EYA1	ENST00000340726	human	ensembl	69_37n	-1	known	missense	c.626	p.N209S	1.000	NULL	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313	90	0	0.00	329	227	40.83	-	-	-
FANCF	0	genome.wustl.edu	37	11	22646798	22646798	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	11	22646798	22646798	T	A	SNP	FANCF	ENST00000327470	human	ensembl	69_37n	-1	known	missense	c.559	p.R187W	0.000	NULL	NULL	-	no_errors	FANCF	HGNC	ENSG00000183161	20	0	0.00	26	7	21.21	-	-	-
FLCN	0	genome.wustl.edu	37	17	17119708	17119709	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	17119708	17119709	-	G	INS	FLCN	ENST00000285071	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.H429fs	1.000:1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803	54	0	0.00	13	4	23.53	-	-	-
ILF3	0	genome.wustl.edu	37	19	10792682	10792683	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	10792682	10792683	-	C	INS	ILF3	ENST00000449870	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1194_1195	p.Q400fs	1.000:1.000	pfscan_Ds-RNA-bd	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	39	0	0.00	21	3	12.50	-	-	-
IRS4	0	genome.wustl.edu	37	X	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	106	0	0.00	53	9	14.52	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118230488	118230488	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	118230488	118230488	G	C	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1235	p.P412R	0.319	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	102	0	0.00	164	354	68.08	-	-	-
KIAA1211	0	genome.wustl.edu	37	4	57180616	57180616	+	Silent	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	57180616	57180616	G	A	SNP	KIAA1211	ENST00000504228	human	ensembl	69_37n	+1	known	silent	c.948	p.A316	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	36	0	0.00	8	26	76.47	-	-	-
LOXL3	0	genome.wustl.edu	37	2	74763923	74763924	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	2	74763923	74763924	-	C	INS	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	frame_shift_ins	c.825_824	p.A277fs	0.118:0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	55	0	0.00	99	14	12.39	-	-	-
MAPRE3	0	genome.wustl.edu	37	2	27248516	27248517	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	2	27248516	27248517	-	C	INS	MAPRE3	ENST00000233121	human	ensembl	69_37n	+1	known	frame_shift_ins	c.535_536	p.C182fs	0.999:1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764	46	0	0.00	105	13	11.02	-	-	-
MBOAT1	0	genome.wustl.edu	37	6	20152998	20152998	+	Silent	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	6	20152998	20152998	C	T	SNP	MBOAT1	ENST00000324607	human	ensembl	69_37n	-1	known	silent	c.102	p.V34	1.000	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	118	0	0.00	174	120	40.68	-	-	-
MIR328	0	genome.wustl.edu	37	16	67236285	67236286	+	RNA	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	16	67236285	67236286	-	C	INS	MIR328	ENST00000385213	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	MIR328	HGNC	ENSG00000207948	37	0	0.00	6	3	33.33	-	-	-
NCR2	0	genome.wustl.edu	37	6	41318437	41318437	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	6	41318437	41318437	C	G	SNP	NCR2	ENST00000373086	human	ensembl	69_37n	+1	known	missense	c.809	p.P270R	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	NCR2	HGNC	ENSG00000096264	77	0	0.00	83	60	41.96	-	-	-
NIPAL1	0	genome.wustl.edu	37	4	48037625	48037625	+	Silent	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	48037625	48037625	G	A	SNP	NIPAL1	ENST00000295461	human	ensembl	69_37n	+1	known	silent	c.669	p.L223	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL1	HGNC	ENSG00000163293	41	0	0.00	56	101	64.33	-	-	-
NPRL3	0	genome.wustl.edu	37	16	136809	136809	+	Silent	SNP	C	C	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	16	136809	136809	C	G	SNP	NPRL3	ENST00000399953	human	ensembl	69_37n	-1	known	silent	c.1602	p.T534	0.340	NULL	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148	64	0	0.00	19	21	52.50	-	-	-
NRXN2	0	genome.wustl.edu	37	11	64457918	64457919	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	11	64457918	64457919	-	C	INS	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.809_808	p.A270fs	1.000:1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	65	0	0.00	187	26	12.21	-	-	-
P4HTM	0	genome.wustl.edu	37	3	49043192	49043193	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	3	49043192	49043193	-	C	INS	P4HTM	ENST00000343546	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1239_1240	p.L415fs	0.017:0.124	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467	59	0	0.00	23	3	11.54	-	-	-
PABPC1	0	genome.wustl.edu	37	8	101730036	101730037	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	8	101730036	101730037	-	C	INS	PABPC1	ENST00000318607	human	ensembl	69_37n	-1	known	frame_shift_ins	c.468_467	p.M158fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756	45	0	0.00	134	22	14.10	-	-	-
PLEKHG2	0	genome.wustl.edu	37	19	39908303	39908303	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	39908303	39908303	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	69_37n	+1	known	missense	c.853	p.R285C	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	37	0	0.00	31	19	38.00	-	-	-
PROZ	0	genome.wustl.edu	37	13	113814455	113814455	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	13	113814455	113814455	A	C	SNP	PROZ	ENST00000375547	human	ensembl	69_37n	+1	known	missense	c.198	p.E66D	0.996	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1_S6,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Peptidase_S1_S6,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1_S6	-	no_errors	PROZ	HGNC	ENSG00000126231	57	0	0.00	12	19	61.29	-	-	-
PRRC2B	0	genome.wustl.edu	37	9	134350786	134350787	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	9	134350786	134350787	-	G	INS	PRRC2B	ENST00000357304	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3270_3271	p.V1092fs	0.000:0.162	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723	9	0	0.00	4	2	33.33	-	-	-
PTK2B	0	genome.wustl.edu	37	8	27315867	27315867	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	8	27315867	27315867	G	A	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	+1	known	missense	c.2871	p.M957I	1.000	pfam_Focal_adhesion_kin_target_dom,superfamily_Focal_adhesion_kin_target_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	31	0	0.00	38	23	37.70	-	-	-
QPCT	0	genome.wustl.edu	37	2	37586965	37586966	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	2	37586965	37586966	-	G	INS	QPCT	ENST00000338415	human	ensembl	69_37n	+1	known	frame_shift_ins	c.510_511	p.A170fs	0.561:1.000	pfam_Peptidase_M28	pfam_Peptidase_M28	-	no_errors	QPCT	HGNC	ENSG00000115828	39	0	0.00	111	69	38.33	-	-	-
RBM47	0	genome.wustl.edu	37	4	40440780	40440781	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	4	40440780	40440781	-	A	INS	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	frame_shift_ins	c.131_130	p.Y44fs	1.000:1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	10	0	0.00	0	5	100.00	-	-	-
RPS9	0	genome.wustl.edu	37	19	54710423	54710424	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	54710423	54710424	-	TT	INS	RPS9	ENST00000436445	human	ensembl	69_37n	+1	known	frame_shift_ins	c.410_411	p.R138fs	0.940:0.759	NULL	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889	15	0	0.00	33	10	23.26	-	-	-
RYR3	0	genome.wustl.edu	37	15	34151902	34151902	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	15	34151902	34151902	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	missense	c.14269	p.V4757I	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	196	0	0.00	274	478	63.56	-	-	-
SLC39A5	0	genome.wustl.edu	37	12	56630189	56630189	+	Silent	SNP	A	A	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	12	56630189	56630189	A	C	SNP	SLC39A5	ENST00000266980	human	ensembl	69_37n	+1	known	silent	c.955	p.R319	0.875	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540	70	0	0.00	16	36	69.23	-	-	-
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	95	0	0.00	180	394	68.52	-	-	-
USP35	0	genome.wustl.edu	37	11	77920855	77920856	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	11	77920855	77920856	-	C	INS	USP35	ENST00000529308	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1954_1955	p.T655fs	0.000:0.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP35	HGNC	ENSG00000118369	138	0	0.00	414	56	11.91	-	-	-
WASL	0	genome.wustl.edu	37	7	123335910	123335910	+	Silent	SNP	T	T	C			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	7	123335910	123335910	T	C	SNP	WASL	ENST00000223023	human	ensembl	69_37n	-1	known	silent	c.639	p.G213	1.000	pfam_PAK_box_Rho-bd,superfamily_WASP_C,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	69	0	0.00	138	76	35.51	-	-	-
ZMYM3	0	genome.wustl.edu	37	X	70472962	70472963	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	X	70472962	70472963	-	G	INS	ZMYM3	ENST00000373988	human	ensembl	69_37n	-1	known	frame_shift_ins	c.144_143	p.G49fs	0.994:1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH	-	no_errors	ZMYM3	HGNC	ENSG00000147130	30	0	0.00	30	4	11.76	-	-	-
ZNF641	0	genome.wustl.edu	37	12	48741042	48741043	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	12	48741042	48741043	-	CG	INS	ZNF641	ENST00000301042	human	ensembl	69_37n	-1	known	frame_shift_ins	c.311_310	p.G104fs	1.000:0.984	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528	49	0	0.00	6	16	72.73	-	-	-
ZNF773	0	genome.wustl.edu	37	19	58017763	58017763	+	Silent	SNP	G	G	A			TCGA-A2-A0T2-01A-11W-A097-09	TCGA-A2-A0T2-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c7918143-dbce-45b3-8d24-2993a9e2b7f4	5b5581e0-8d87-47db-a789-bc943c4cd6e9	19	58017763	58017763	G	A	SNP	ZNF773	ENST00000282292	human	ensembl	69_37n	+1	known	silent	c.300	p.E100	0.050	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439	67	0	0.00	199	132	39.76	-	-	-
