Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA10	0	genome.wustl.edu	37	17	67190107	67190107	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	67190107	67190107	G	A	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	nonsense	c.1369	p.Q457*	0.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	69	0	0.00	74	29	28.16	-	-	-
ATP1A4	0	genome.wustl.edu	37	1	160134150	160134150	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	160134150	160134150	C	G	SNP	ATP1A4	ENST00000368081	human	ensembl	69_37n	+1	known	missense	c.983	p.A328G	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A4	HGNC	ENSG00000132681	80	0	0.00	103	29	21.97	-	-	-
ATP9A	0	genome.wustl.edu	37	20	50238636	50238636	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	20	50238636	50238636	G	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.2092	p.Q698K	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	46	0	0.00	74	17	18.68	-	-	-
ATXN1	0	genome.wustl.edu	37	6	16326909	16326909	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	16326909	16326909	G	T	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.1633	p.P545T	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	22	0	0.00	19	9	32.14	-	-	-
AWAT2	0	genome.wustl.edu	37	X	69263413	69263413	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	69263413	69263413	C	A	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	missense	c.387	p.K129N	0.998	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	50	0	0.00	29	19	39.58	-	-	-
BRWD3	0	genome.wustl.edu	37	X	79999555	79999555	+	Silent	SNP	A	A	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	79999555	79999555	A	G	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.789	p.H263	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	45	0	0.00	39	24	38.10	-	-	-
C5	0	genome.wustl.edu	37	9	123789552	123789552	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	9	123789552	123789552	T	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.759	p.R253S	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	73	0	0.00	56	29	34.12	-	-	-
CCDC60	0	genome.wustl.edu	37	12	119966483	119966483	+	Silent	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	119966483	119966483	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	+1	known	silent	c.1293	p.K431	1.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	46	0	0.00	28	11	28.21	-	-	-
CEP85	0	genome.wustl.edu	37	1	26582252	26582252	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	26582252	26582252	T	G	SNP	CEP85	ENST00000252992	human	ensembl	69_37n	+1	known	missense	c.799	p.W267G	1.000	NULL	NULL	-	no_errors	CEP85	HGNC	ENSG00000130695	16	0	0.00	19	7	26.92	-	-	-
CHPT1	0	genome.wustl.edu	37	12	102117039	102117039	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	102117039	102117039	A	C	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	+1	known	missense	c.874	p.K292Q	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	83	0	0.00	79	41	34.17	-	-	-
CX3CR1	0	genome.wustl.edu	37	3	39306996	39306997	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	39306996	39306997	TC	-	DEL	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	frame_shift_del	c.1101_1100	p.G367fs	0.002:0.002	prints_Chemokine_fractalkine_CX3CR1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	21	0	0.00	13	8	38.10	-	-	-
CX3CR1	0	genome.wustl.edu	37	3	39307000	39307000	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	39307000	39307000	T	-	DEL	CX3CR1	ENST00000358309	human	ensembl	69_37n	-1	known	frame_shift_del	c.1097	p.H366fs	0.003	prints_Chemokine_fractalkine_CX3CR1	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_fractalkine_CX3CR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329	23	0	0.00	12	8	36.36	-	-	-
ERC1	0	genome.wustl.edu	37	12	1517405	1517405	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	1517405	1517405	C	G	SNP	ERC1	ENST00000360905	human	ensembl	69_37n	+1	known	missense	c.3016	p.P1006A	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	49	0	0.00	47	20	29.85	-	-	-
FIGLA	0	genome.wustl.edu	37	2	71012744	71012744	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	71012744	71012744	T	C	SNP	FIGLA	ENST00000332372	human	ensembl	69_37n	-1	known	missense	c.412	p.S138G	0.120	superfamily_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	FIGLA	HGNC	ENSG00000183733	106	0	0.00	86	22	20.18	-	-	-
GIMAP6	0	genome.wustl.edu	37	7	150325382	150325382	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	150325382	150325382	G	T	SNP	GIMAP6	ENST00000328902	human	ensembl	69_37n	-1	known	missense	c.304	p.P102T	0.805	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP6	HGNC	ENSG00000133561	30	0	0.00	29	7	19.44	-	-	-
GLI2	0	genome.wustl.edu	37	2	121685040	121685040	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	121685040	121685040	C	G	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	+1	known	missense	c.252	p.H84Q	0.904	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	35	0	0.00	22	16	42.11	-	-	-
GPR144	0	genome.wustl.edu	37	9	127218946	127218946	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	9	127218946	127218946	G	A	SNP	GPR144	ENST00000334810	human	ensembl	69_37n	+1	known	missense	c.1495	p.A499T	0.957	NULL	pfam_GPCR_2_secretin-like,pfam_Pentaxin,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_C-type_lectin_fold,smart_Pentaxin,smart_GPS_dom,prints_Pentaxin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR144	HGNC	ENSG00000180264	14	0	0.00	21	6	22.22	-	-	-
GSK3A	0	genome.wustl.edu	37	19	42744148	42744148	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	42744148	42744148	G	C	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.430	p.L144V	0.999	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	42	0	0.00	38	17	30.91	-	-	-
GTF2IRD2P1	0	genome.wustl.edu	37	7	72658429	72658429	+	RNA	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	72658429	72658429	G	A	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544	68	0	0.00	70	33	32.04	-	-	-
HIST1H2AI	0	genome.wustl.edu	37	6	27776320	27776320	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	27776320	27776320	C	A	SNP	HIST1H2AI	ENST00000358739	human	ensembl	69_37n	+1	known	missense	c.333	p.N111K	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AI	HGNC	ENSG00000196747	49	0	0.00	35	17	32.69	-	-	-
HIST1H2BE	0	genome.wustl.edu	37	6	26184396	26184397	+	In_Frame_Ins	INS	-	-	TGG			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	26184396	26184397	-	TGG	INS	HIST1H2BE	ENST00000356530	human	ensembl	69_37n	+1	known	in_frame_ins	c.373_374	p.S125in_frame_insLA	1.000:1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BE	HGNC	ENSG00000197697	33	0	0.00	19	6	24.00	-	-	-
IQGAP2	0	genome.wustl.edu	37	5	75970488	75970488	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	5	75970488	75970488	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	69_37n	+1	known	missense	c.3481	p.L1161F	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703	28	0	0.00	15	15	50.00	-	-	-
ITGAX	0	genome.wustl.edu	37	16	31384615	31384615	+	Silent	SNP	A	A	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	16	31384615	31384615	A	G	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	+1	known	silent	c.2412	p.E804	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	21	0	0.00	20	8	28.57	-	-	-
ITIH2	0	genome.wustl.edu	37	10	7773943	7773943	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	10	7773943	7773943	T	C	SNP	ITIH2	ENST00000358415	human	ensembl	69_37n	+1	known	missense	c.1631	p.V544A	0.342	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	53	0	0.00	35	20	36.36	-	-	-
KBTBD4	0	genome.wustl.edu	37	11	47599443	47599444	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	47599443	47599444	-	A	INS	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	frame_shift_ins	c.157_156	p.L52fs	1.000:1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	33	0	0.00	27	5	15.62	-	-	-
KIAA0319	0	genome.wustl.edu	37	6	24559272	24559272	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	6	24559272	24559272	C	G	SNP	KIAA0319	ENST00000378214	human	ensembl	69_37n	-1	known	missense	c.2703	p.L901F	1.000	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	37	0	0.00	33	11	25.00	-	-	-
LILRA6	0	genome.wustl.edu	37	19	54745496	54745496	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	54745496	54745496	C	T	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.614	p.R205Q	0.036	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	22	0	0.00	14	6	30.00	-	-	-
LIN9	0	genome.wustl.edu	37	1	226426761	226426761	+	Silent	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	226426761	226426761	G	T	SNP	LIN9	ENST00000328205	human	ensembl	69_37n	-1	known	silent	c.1204	p.R402	1.000	NULL	pfam_DIRP	-	no_errors	LIN9	HGNC	ENSG00000183814	65	0	0.00	52	45	46.39	-	-	-
LNX2	0	genome.wustl.edu	37	13	28134091	28134091	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	13	28134091	28134091	G	T	SNP	LNX2	ENST00000316334	human	ensembl	69_37n	-1	known	missense	c.1256	p.A419D	0.996	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517	115	0	0.00	89	50	35.97	-	-	-
LYST	0	genome.wustl.edu	37	1	235891402	235891402	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	235891402	235891402	T	C	SNP	LYST	ENST00000389793	human	ensembl	69_37n	-1	known	missense	c.9136	p.N3046D	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	55	0	0.00	59	22	27.16	-	-	-
MAP3K13	0	genome.wustl.edu	37	3	185165736	185165736	+	Splice_Site	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	3	185165736	185165736	G	A	SNP	MAP3K13	ENST00000265026	human	ensembl	69_37n	+1	known	splice_site	c.1010+1	e4+1	1.000	-	-	-	no_errors	MAP3K13	HGNC	ENSG00000073803	26	0	0.00	23	8	25.81	-	-	-
MAP3K6	0	genome.wustl.edu	37	1	27682955	27682955	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	27682955	27682955	G	C	SNP	MAP3K6	ENST00000357582	human	ensembl	69_37n	-1	known	nonsense	c.3561	p.Y1187*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	21	0	0.00	10	10	50.00	-	-	-
MLL	0	genome.wustl.edu	37	11	118344574	118344575	+	Frame_Shift_Ins	INS	-	-	TAAA			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	118344574	118344575	-	TAAA	INS	MLL	ENST00000389506	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2700_2701	p.S900fs	1.000:1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	MLL	HGNC	ENSG00000118058	89	0	0.00	22	16	42.11	-	-	-
MOGAT3	0	genome.wustl.edu	37	7	100842014	100842014	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	100842014	100842014	G	C	SNP	MOGAT3	ENST00000440203	human	ensembl	69_37n	-1	known	missense	c.386	p.T129S	0.955	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	26	0	0.00	14	11	44.00	-	-	-
NSFL1C	0	genome.wustl.edu	37	20	1435746	1435746	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	20	1435746	1435746	G	C	SNP	NSFL1C	ENST00000350991	human	ensembl	69_37n	-1	known	missense	c.316	p.Q106E	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833	63	0	0.00	69	19	21.59	-	-	-
NTRK2	0	genome.wustl.edu	37	9	87563383	87563383	+	Nonsense_Mutation	SNP	A	A	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	9	87563383	87563383	A	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	+1	known	nonsense	c.1771	p.K591*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	35	0	0.00	28	6	17.65	-	-	-
ONECUT2	0	genome.wustl.edu	37	18	55103476	55103477	+	In_Frame_Ins	INS	-	-	CAC			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	18	55103476	55103477	-	CAC	INS	ONECUT2	ENST00000262095	human	ensembl	69_37n	+1	known	in_frame_ins	c.528_529	p.180in_frame_insH	0.715:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547	16	0	0.00	21	10	32.26	-	-	-
PARP4	0	genome.wustl.edu	37	13	25058867	25058867	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	13	25058867	25058867	C	T	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.1372	p.V458I	0.992	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	48	0	0.00	37	5	11.90	-	-	-
PHKA2	0	genome.wustl.edu	37	X	18942252	18942252	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	18942252	18942252	G	T	SNP	PHKA2	ENST00000379942	human	ensembl	69_37n	-1	known	missense	c.1715	p.T572K	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	29	0	0.00	29	9	23.68	-	-	-
RBM46	0	genome.wustl.edu	37	4	155719029	155719029	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	4	155719029	155719029	A	T	SNP	RBM46	ENST00000281722	human	ensembl	69_37n	+1	known	missense	c.218	p.Y73F	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962	79	0	0.00	65	27	29.35	-	-	-
RHBDF2	0	genome.wustl.edu	37	17	74470176	74470176	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	74470176	74470176	T	C	SNP	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	missense	c.1600	p.M534V	0.984	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	23	0	0.00	16	9	36.00	-	-	-
RNASEK	0	genome.wustl.edu	37	17	6917541	6917541	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	6917541	6917541	T	C	SNP	RNASEK	ENST00000548577	human	ensembl	69_37n	+1	known	missense	c.350	p.L117P	1.000	NULL	NULL	-	no_errors	RNASEK	HGNC	ENSG00000219200	26	0	0.00	17	11	39.29	-	-	-
ROCK1	0	genome.wustl.edu	37	18	18586456	18586456	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	18	18586456	18586456	G	C	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	missense	c.1741	p.L581V	1.000	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	63	0	0.00	53	29	35.37	-	-	-
SART3	0	genome.wustl.edu	37	12	108920132	108920132	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	12	108920132	108920132	G	A	SNP	SART3	ENST00000228284	human	ensembl	69_37n	-1	known	missense	c.2114	p.T705I	0.998	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	34	0	0.00	22	33	60.00	-	-	-
SLC3A2	0	genome.wustl.edu	37	11	62652118	62652118	+	Silent	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	62652118	62652118	C	T	SNP	SLC3A2	ENST00000377892	human	ensembl	69_37n	+1	known	silent	c.1170	p.F390	0.102	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003	96	0	0.00	64	30	31.91	-	-	-
TMEM86A	0	genome.wustl.edu	37	11	18723330	18723330	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	18723330	18723330	G	C	SNP	TMEM86A	ENST00000280734	human	ensembl	69_37n	+1	known	missense	c.497	p.R166P	1.000	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117	27	0	0.00	24	14	36.84	-	-	-
TNFSF4	0	genome.wustl.edu	37	1	173157660	173157660	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	173157660	173157660	C	T	SNP	TNFSF4	ENST00000281834	human	ensembl	69_37n	-1	known	missense	c.202	p.E68K	0.009	superfamily_Tumour_necrosis_fac-like,smart_TNF	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF	-	no_errors	TNFSF4	HGNC	ENSG00000117586	50	0	0.00	70	21	23.08	-	-	-
TRIM50	0	genome.wustl.edu	37	7	72727112	72727112	+	Silent	SNP	G	G	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	7	72727112	72727112	G	T	SNP	TRIM50	ENST00000333149	human	ensembl	69_37n	-1	known	silent	c.1269	p.G423	0.034	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755	9	0	0.00	11	4	26.67	-	-	-
TRIM64B	0	genome.wustl.edu	37	11	89608899	89608899	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	89608899	89608899	T	G	SNP	TRIM64B	ENST00000329862	human	ensembl	69_37n	-1	known	missense	c.287	p.E96A	0.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM64B	HGNC	ENSG00000189253	15	0	0.00	3	3	50.00	-	-	-
TTC17	0	genome.wustl.edu	37	11	43411360	43411360	+	Silent	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	11	43411360	43411360	C	T	SNP	TTC17	ENST00000039989	human	ensembl	69_37n	+1	known	silent	c.408	p.S136	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841	43	0	0.00	44	32	42.11	-	-	-
TTLL5	0	genome.wustl.edu	37	14	76246009	76246011	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	14	76246009	76246011	AAC	-	DEL	TTLL5	ENST00000298832	human	ensembl	69_37n	+1	known	in_frame_del	c.2479_2481	p.N830in_frame_del	0.983:1.000:1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	67	0	0.00	31	28	47.46	-	-	-
ULK2	0	genome.wustl.edu	37	17	19699025	19699025	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	17	19699025	19699025	C	T	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	missense	c.2011	p.G671R	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	75	0	0.00	72	27	27.00	-	-	-
USP1	0	genome.wustl.edu	37	1	62905637	62905637	+	Silent	SNP	T	T	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	1	62905637	62905637	T	G	SNP	USP1	ENST00000339950	human	ensembl	69_37n	+1	known	silent	c.99	p.T33	0.997	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	29	0	0.00	29	19	39.58	-	-	-
WDR33	0	genome.wustl.edu	37	2	128526530	128526530	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	2	128526530	128526530	G	A	SNP	WDR33	ENST00000322313	human	ensembl	69_37n	-1	known	missense	c.250	p.P84S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709	53	0	0.00	45	28	37.84	-	-	-
WWC3	0	genome.wustl.edu	37	X	10102560	10102560	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	X	10102560	10102560	C	G	SNP	WWC3	ENST00000380861	human	ensembl	69_37n	+1	known	missense	c.2687	p.S896W	0.336	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	WWC3	HGNC	ENSG00000047644	47	0	0.00	27	37	57.81	-	-	-
ZNF16	0	genome.wustl.edu	37	8	146157623	146157623	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	8	146157623	146157623	C	T	SNP	ZNF16	ENST00000276816	human	ensembl	69_37n	-1	known	missense	c.550	p.D184N	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631	30	0	0.00	44	10	18.18	-	-	-
ZNF546	0	genome.wustl.edu	37	19	40520249	40520249	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A25E-01A-11D-A167-09	TCGA-A2-A25E-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8dce6a9d-ecb7-4699-9fda-1b09b1b1de43	17b3d764-49f2-4ba6-ac9e-44619e31943f	19	40520249	40520249	G	A	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	+1	known	missense	c.1072	p.E358K	0.044	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	47	0	0.00	50	25	33.33	-	-	-
