Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS2	0	genome.wustl.edu	37	5	178566948	178566948	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	5	178566948	178566948	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	69_37n	-1	known	missense	c.1718	p.C573Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	31	0	0.00	22	9	29.03	-	-	-
ADAMTSL5	0	genome.wustl.edu	37	19	1506309	1506309	+	Splice_Site	SNP	T	T	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	1506309	1506309	T	G	SNP	ADAMTSL5	ENST00000395467	human	ensembl	69_37n	-1	known	splice_site	c.350-2	e3-2	1.000	-	-	-	no_errors	ADAMTSL5	HGNC	ENSG00000185761	17	0	0.00	16	4	20.00	-	-	-
ALS2CR11	0	genome.wustl.edu	37	2	202357559	202357559	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	202357559	202357559	G	T	SNP	ALS2CR11	ENST00000439140	human	ensembl	69_37n	-1	novel	missense	c.3505	p.H1169N	0.981	NULL	superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	22	0	0.00	16	3	15.79	-	-	-
CDH1	0	genome.wustl.edu	37	16	68857496	68857496	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	68857496	68857496	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.2131	p.L711fs	0.273	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0.00	16	11	40.74	-	-	-
GPT2	0	genome.wustl.edu	37	16	46918827	46918827	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	46918827	46918827	C	T	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	+1	known	missense	c.200	p.P67L	1.000	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	15	0	0.00	16	6	27.27	-	-	-
HUWE1	0	genome.wustl.edu	37	X	53602625	53602625	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	X	53602625	53602625	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.6008	p.T2003M	0.163	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	30	0	0.00	28	8	22.22	-	-	-
KANSL2	0	genome.wustl.edu	37	12	49075811	49075811	+	Silent	SNP	T	T	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	12	49075811	49075811	T	G	SNP	KANSL2	ENST00000550347	human	ensembl	69_37n	-1	putative	silent	c.154	p.R52	0.025	NULL	NULL	-	no_errors	KANSL2	HGNC	ENSG00000139620	20	0	0.00	21	4	16.00	-	-	-
LILRA2	0	genome.wustl.edu	37	19	55098805	55098805	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	55098805	55098805	G	A	SNP	LILRA2	ENST00000251377	human	ensembl	69_37n	+1	known	missense	c.1444	p.G482R	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA2	HGNC	ENSG00000239998	44	0	0.00	44	14	24.14	-	-	-
LRRC37A6P	0	genome.wustl.edu	37	10	27540561	27540561	+	RNA	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	10	27540561	27540561	C	T	SNP	LRRC37A6P	ENST00000574795	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445	30	0	0.00	36	12	25.00	-	-	-
MAP3K5	0	genome.wustl.edu	37	6	137019648	137019648	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	6	137019648	137019648	T	A	SNP	MAP3K5	ENST00000359015	human	ensembl	69_37n	-1	known	missense	c.785	p.K262M	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	34	0	0.00	19	3	13.64	-	-	-
MEG3	0	genome.wustl.edu	37	14	101300843	101300843	+	RNA	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	101300843	101300843	G	A	SNP	MEG3	ENST00000398461	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	37	0	0.00	27	4	12.90	-	-	-
MGAT4A	0	genome.wustl.edu	37	2	99279812	99279812	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	99279812	99279812	C	A	SNP	MGAT4A	ENST00000414521	human	ensembl	69_37n	-1	known	missense	c.11	p.S4I	0.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	18	0	0.00	10	3	23.08	-	-	-
MIR300	0	genome.wustl.edu	37	14	101507721	101507721	+	RNA	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	101507721	101507721	C	T	SNP	MIR300	ENST00000401138	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR300	HGNC	ENSG00000215957	34	0	0.00	20	13	39.39	-	-	-
MIR3689B	0	genome.wustl.edu	37	9	137742018	137742018	+	RNA	SNP	A	A	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	9	137742018	137742018	A	G	SNP	MIR3689B	ENST00000581772	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3689B	HGNC	ENSG00000264163	21	0	0.00	25	7	21.88	-	-	-
MTERFD2	0	genome.wustl.edu	37	2	242026649	242026649	+	RNA	SNP	A	A	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	2	242026649	242026649	A	G	SNP	MTERFD2	ENST00000455202	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTERFD2	HGNC	ENSG00000122085	22	0	0.00	12	3	20.00	-	-	-
MYH8	0	genome.wustl.edu	37	17	10299647	10299647	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	17	10299647	10299647	C	A	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.4653	p.E1551D	1.000	pfam_Myosin_tail,superfamily_t-SNARE	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	62	0	0.00	52	15	22.39	-	-	-
OCSTAMP	0	genome.wustl.edu	37	20	45170213	45170213	+	Silent	SNP	A	A	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	20	45170213	45170213	A	G	SNP	OCSTAMP	ENST00000279028	human	ensembl	69_37n	-1	known	silent	c.1401	p.S467	0.000	NULL	pfam_DC_STAMP-like	-	no_errors	OCSTAMP	HGNC	ENSG00000149635	15	0	0.00	10	12	54.55	-	-	-
OR51A7	0	genome.wustl.edu	37	11	4929467	4929467	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	11	4929467	4929467	G	T	SNP	OR51A7	ENST00000359350	human	ensembl	69_37n	+1	known	missense	c.868	p.V290L	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51A7	HGNC	ENSG00000176895	36	0	0.00	34	9	20.93	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0.00	21	8	27.59	-	-	-
PKD1	0	genome.wustl.edu	37	16	2147330	2147330	+	Silent	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	16	2147330	2147330	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	silent	c.10395	p.F3465	0.905	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	46	0	0.00	58	25	30.12	-	-	-
PRAMEF4	0	genome.wustl.edu	37	1	12939782	12939782	+	Silent	SNP	A	A	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	1	12939782	12939782	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	silent	c.1020	p.L340	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	39	0	0.00	44	6	12.00	-	-	-
RPS6KL1	0	genome.wustl.edu	37	14	75375556	75375556	+	Missense_Mutation	SNP	T	T	G			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	75375556	75375556	T	G	SNP	RPS6KL1	ENST00000553971	human	ensembl	69_37n	-1	novel	missense	c.199	p.N67H	0.897	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RPS6KL1	HGNC	ENSG00000198208	15	0	0.00	12	10	45.45	-	-	-
SERPINA4	0	genome.wustl.edu	37	14	95029840	95029840	+	Silent	SNP	G	G	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	14	95029840	95029840	G	T	SNP	SERPINA4	ENST00000298841	human	ensembl	69_37n	+1	known	silent	c.21	p.L7	0.199	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665	30	0	0.00	17	3	15.00	-	-	-
SGSM1	0	genome.wustl.edu	37	22	25280109	25280109	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	22	25280109	25280109	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	69_37n	+1	known	missense	c.1750	p.D584N	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	32	0	0.00	27	8	22.86	-	-	-
SLC35F1	0	genome.wustl.edu	37	6	118475629	118475629	+	Silent	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	6	118475629	118475629	C	T	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	+1	known	silent	c.195	p.A65	0.996	pfam_DUF914_euk	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	49	0	0.00	32	16	33.33	-	-	-
SLCO1B7	0	genome.wustl.edu	37	12	21168661	21168661	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	12	21168661	21168661	G	T	SNP	SLCO1B7	ENST00000421593	human	ensembl	69_37n	+1	known	missense	c.32	p.R11I	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754	32	0	0.00	17	4	19.05	-	-	-
TRBV29-1	0	genome.wustl.edu	37	7	142448463	142448463	+	Silent	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	7	142448463	142448463	C	T	SNP	TRBV29-1	ENST00000422143	human	ensembl	69_37n	+1	known	silent	c.57	p.I19	0.067	pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV29-1	HGNC	ENSG00000232869	57	0	0.00	42	20	32.26	-	-	-
TSTD2	0	genome.wustl.edu	37	9	100368543	100368543	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	9	100368543	100368543	C	T	SNP	TSTD2	ENST00000341170	human	ensembl	69_37n	-1	known	missense	c.836	p.G279E	1.000	superfamily_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925	47	0	0.00	31	9	22.50	-	-	-
USP8	0	genome.wustl.edu	37	15	50782481	50782481	+	Missense_Mutation	SNP	A	A	C			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	15	50782481	50782481	A	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	+1	known	missense	c.1993	p.T665P	1.000	superfamily_WW_Rsp5_WWP	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	21	0	0.00	7	7	50.00	-	-	-
VEGFC	0	genome.wustl.edu	37	4	177713372	177713373	+	In_Frame_Ins	INS	-	-	GGC			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	4	177713372	177713373	-	GGC	INS	VEGFC	ENST00000280193	human	ensembl	69_37n	-1	known	in_frame_ins	c.94_93	p.31in_frame_insA	0.904:0.984	NULL	pfam_PD_growth_factor,pfam_CXCXC_repeat,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFC	HGNC	ENSG00000150630	18	0	0.00	29	13	30.95	-	-	-
YY1AP1	0	genome.wustl.edu	37	1	155644863	155644863	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	1	155644863	155644863	G	A	SNP	YY1AP1	ENST00000368339	human	ensembl	69_37n	-1	known	missense	c.763	p.H255Y	1.000	NULL	NULL	-	no_errors	YY1AP1	HGNC	ENSG00000163374	50	0	0.00	51	27	34.62	-	-	-
ZNF252P-AS1	0	genome.wustl.edu	37	8	146228779	146228779	+	RNA	SNP	T	T	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	8	146228779	146228779	T	A	SNP	ZNF252P-AS1	ENST00000527067	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.848	-	-	-	no_errors	ZNF252P-AS1	HGNC	ENSG00000255559	29	0	0.00	31	4	11.43	-	-	-
ZNF540	0	genome.wustl.edu	37	19	38090640	38090640	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A3J1-01A-11D-A20S-09	TCGA-A7-A3J1-10A-01D-A20S-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011	bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea	19	38090640	38090640	C	A	SNP	ZNF540	ENST00000316433	human	ensembl	69_37n	+1	known	missense	c.123	p.N41K	0.008	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817	27	0	0.00	20	7	25.93	-	-	-
