Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AANAT	0	genome.wustl.edu	37	17	74464756	74464756	+	Silent	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	74464756	74464756	G	T	SNP	AANAT	ENST00000250615	human	ensembl	69_37n	+1	known	silent	c.63	p.V21	0.228	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	AANAT	HGNC	ENSG00000129673	35	0	0.00	32	4	11.11	-	-	-
ADPGK	0	genome.wustl.edu	37	15	73044812	73044812	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	73044812	73044812	C	T	SNP	ADPGK	ENST00000311669	human	ensembl	69_37n	-1	known	nonsense	c.1361	p.W454*	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	54	0	0.00	33	4	10.81	-	-	-
ALG1L	0	genome.wustl.edu	37	3	125649445	125649445	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	125649445	125649445	T	A	SNP	ALG1L	ENST00000340333	human	ensembl	69_37n	-1	known	missense	c.303	p.E101D	0.999	NULL	NULL	-	no_errors	ALG1L	HGNC	ENSG00000189366	162	0	0.00	62	23	27.06	-	-	-
APPL1	0	genome.wustl.edu	37	3	57303610	57303610	+	Missense_Mutation	SNP	A	A	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	57303610	57303610	A	T	SNP	APPL1	ENST00000288266	human	ensembl	69_37n	+1	known	missense	c.2025	p.R675S	1.000	NULL	pfam_PTyr_interaction_dom,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL1	HGNC	ENSG00000157500	78	0	0.00	32	6	15.79	-	-	-
ARPC1A	0	genome.wustl.edu	37	7	98942098	98942098	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	7	98942098	98942098	C	T	SNP	ARPC1A	ENST00000262942	human	ensembl	69_37n	+1	known	nonsense	c.352	p.R118*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685	37	0	0.00	22	5	18.52	-	-	-
ATP2A1	0	genome.wustl.edu	37	16	28909621	28909621	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	28909621	28909621	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	+1	known	missense	c.1613	p.T538M	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	70	0	0.00	66	25	27.47	-	-	-
BMPR1A	0	genome.wustl.edu	37	10	88635786	88635786	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	88635786	88635786	T	A	SNP	BMPR1A	ENST00000224764	human	ensembl	69_37n	+1	known	missense	c.11	p.L4Q	0.204	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR1A	HGNC	ENSG00000107779	135	0	0.00	69	24	25.81	-	-	-
C10orf71	0	genome.wustl.edu	37	10	50532913	50532913	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	50532913	50532913	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	+1	known	missense	c.2323	p.R775W	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	44	0	0.00	25	8	24.24	-	-	-
C2orf82	0	genome.wustl.edu	37	2	233740391	233740391	+	RNA	SNP	A	A	G			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	2	233740391	233740391	A	G	SNP	C2orf82	ENST00000476690	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C2orf82	HGNC	ENSG00000182600	9	0	0.00	9	5	35.71	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862095	68862095	+	Nonsense_Mutation	SNP	T	T	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	68862095	68862095	T	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.2183	p.L728*	0.983	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	164	0	0.00	64	24	27.27	-	-	-
CDHR1	0	genome.wustl.edu	37	10	85974550	85974550	+	RNA	SNP	C	C	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	85974550	85974550	C	A	SNP	CDHR1	ENST00000459673	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CDHR1	HGNC	ENSG00000148600	8	0	0.00	5	4	44.44	-	-	-
CHD5	0	genome.wustl.edu	37	1	6191719	6191719	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	1	6191719	6191719	G	T	SNP	CHD5	ENST00000462991	human	ensembl	69_37n	-1	known	missense	c.1381	p.P461T	0.611	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_DUF1086,pfam_DUF1087,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CHD5	HGNC	ENSG00000116254	66	0	0.00	35	4	10.26	-	-	-
CIDECP	0	genome.wustl.edu	37	3	10059658	10059658	+	RNA	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	10059658	10059658	G	T	SNP	CIDECP	ENST00000424471	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CIDECP	HGNC	ENSG00000186162	53	0	0.00	30	4	11.76	-	-	-
CLDN4	0	genome.wustl.edu	37	7	73245798	73245798	+	Silent	SNP	C	C	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	7	73245798	73245798	C	A	SNP	CLDN4	ENST00000340958	human	ensembl	69_37n	+1	known	silent	c.267	p.I89	0.998	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143	74	0	0.00	36	7	16.28	-	-	-
COL6A1	0	genome.wustl.edu	37	21	47423622	47423622	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	21	47423622	47423622	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	+1	known	missense	c.2782	p.R928C	0.892	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	107	0	0.00	43	5	10.42	-	-	-
CRYBB2P1	0	genome.wustl.edu	37	22	25853368	25853368	+	RNA	SNP	T	T	C			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	22	25853368	25853368	T	C	SNP	CRYBB2P1	ENST00000354451	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CRYBB2P1	HGNC	ENSG00000100058	88	0	0.00	39	6	13.33	-	-	-
CSRP2	0	genome.wustl.edu	37	12	77253422	77253422	+	Splice_Site	SNP	T	T	C			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	77253422	77253422	T	C	SNP	CSRP2	ENST00000311083	human	ensembl	69_37n	-1	known	splice_site	c.412-2	e4-2	0.998	-	-	-	no_errors	CSRP2	HGNC	ENSG00000175183	66	0	0.00	35	8	18.60	-	-	-
DCDC1	0	genome.wustl.edu	37	11	31263112	31263112	+	RNA	SNP	A	A	G			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	11	31263112	31263112	A	G	SNP	DCDC1	ENST00000534722	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DCDC1	HGNC	ENSG00000188682	37	0	0.00	33	4	10.81	-	-	-
FAM208B	0	genome.wustl.edu	37	10	5754852	5754852	+	RNA	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	10	5754852	5754852	G	T	SNP	FAM208B	ENST00000463468	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	FAM208B	HGNC	ENSG00000108021	42	0	0.00	42	7	14.00	-	-	-
FAM65A	0	genome.wustl.edu	37	16	67579729	67579729	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	16	67579729	67579729	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	69_37n	+1	known	missense	c.3413	p.R1138Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	57	0	0.00	14	6	30.00	-	-	-
GCDH	0	genome.wustl.edu	37	19	13010643	13010643	+	RNA	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	13010643	13010643	G	T	SNP	GCDH	ENST00000588242	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCDH	HGNC	ENSG00000105607	38	0	0.00	16	3	15.79	-	-	-
GJE1	0	genome.wustl.edu	37	6	142455130	142455130	+	Silent	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	6	142455130	142455130	C	T	SNP	GJE1	ENST00000450456	human	ensembl	69_37n	+1	known	silent	c.183	p.N61	0.987	pfam_Connexin_N	pfam_Connexin_CCC,pfam_Connexin_N	-	no_errors	GJE1	HGNC	ENSG00000203733	121	0	0.00	53	8	13.11	-	-	-
GTPBP2	0	genome.wustl.edu	37	6	43593284	43593284	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	6	43593284	43593284	C	A	SNP	GTPBP2	ENST00000307126	human	ensembl	69_37n	-1	known	missense	c.521	p.R174L	1.000	pfam_ProtSyn_GTP-bd	pfam_ProtSyn_GTP-bd,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	GTPBP2	HGNC	ENSG00000172432	62	0	0.00	29	4	11.76	-	-	-
HAL	0	genome.wustl.edu	37	12	96389632	96389632	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	96389632	96389632	G	T	SNP	HAL	ENST00000261208	human	ensembl	69_37n	-1	known	missense	c.57	p.D19E	0.003	NULL	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110	55	0	0.00	23	4	14.81	-	-	-
ITGA9	0	genome.wustl.edu	37	3	37544783	37544783	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	3	37544783	37544783	C	-	DEL	ITGA9	ENST00000264741	human	ensembl	69_37n	+1	known	frame_shift_del	c.727	p.R243fs	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668	35	0	0.00	11	2	15.38	-	-	-
MAP2	0	genome.wustl.edu	37	2	210570443	210570443	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	2	210570443	210570443	G	A	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	+1	known	missense	c.4724	p.R1575Q	1.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	49	0	0.00	40	8	16.67	-	-	-
NCOA2	0	genome.wustl.edu	37	8	71087081	71087081	+	Silent	SNP	A	A	C			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	8	71087081	71087081	A	C	SNP	NCOA2	ENST00000452400	human	ensembl	69_37n	-1	known	silent	c.273	p.A91	0.992	superfamily_HLH_DNA-bd,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA2	HGNC	ENSG00000140396	75	0	0.00	43	11	20.37	-	-	-
NCOR1	0	genome.wustl.edu	37	17	16075275	16075275	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	16075275	16075275	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.277	p.H93Y	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	89	0	0.00	33	4	10.81	-	-	-
RASGRP3	0	genome.wustl.edu	37	2	33752360	33752360	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	2	33752360	33752360	G	A	SNP	RASGRP3	ENST00000402538	human	ensembl	69_37n	+1	known	missense	c.964	p.E322K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	61	0	0.00	33	4	10.81	-	-	-
RCN3	0	genome.wustl.edu	37	19	50045943	50045943	+	Silent	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	50045943	50045943	G	T	SNP	RCN3	ENST00000270645	human	ensembl	69_37n	+1	known	silent	c.813	p.L271	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN3	HGNC	ENSG00000142552	60	0	0.00	32	7	17.95	-	-	-
RNA5SP498	0	genome.wustl.edu	37	X	1419249	1419249	+	RNA	SNP	A	A	G			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	X	1419249	1419249	A	G	SNP	RNA5SP498	ENST00000411342	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.236	-	-	-	no_errors	RNA5SP498	HGNC	ENSG00000223274	29	0	0.00	29	4	12.12	-	-	-
SELP	0	genome.wustl.edu	37	1	169578896	169578896	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	1	169578896	169578896	G	A	SNP	SELP	ENST00000446728	human	ensembl	69_37n	-1	known	missense	c.991	p.P331S	0.007	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SELP	HGNC	ENSG00000174175	67	0	0.00	33	4	10.81	-	-	-
SEMA6A	0	genome.wustl.edu	37	5	115818155	115818156	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	5	115818155	115818156	-	G	INS	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1079_1078	p.R360fs	0.994:0.966	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	26	0	0.00	16	3	15.79	-	-	-
SLC24A4	0	genome.wustl.edu	37	14	92959216	92959216	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	14	92959216	92959216	G	A	SNP	SLC24A4	ENST00000525557	human	ensembl	69_37n	+1	putative	missense	c.1358	p.R453Q	0.000	NULL	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SLC24A4	HGNC	ENSG00000140090	53	0	0.00	33	5	13.16	-	-	-
SLC28A2	0	genome.wustl.edu	37	15	45558340	45558340	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	45558340	45558340	G	C	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	+1	known	missense	c.923	p.G308A	1.000	pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	72	0	0.00	34	14	29.17	-	-	-
SLC30A9	0	genome.wustl.edu	37	4	42051496	42051496	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	42051496	42051496	G	T	SNP	SLC30A9	ENST00000264451	human	ensembl	69_37n	+1	known	missense	c.840	p.Q280H	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	51	0	0.00	33	4	10.81	-	-	-
SORBS2	0	genome.wustl.edu	37	4	186528172	186528172	+	RNA	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	186528172	186528172	G	A	SNP	SORBS2	ENST00000498125	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	SORBS2	HGNC	ENSG00000154556	37	0	0.00	25	4	13.79	-	-	-
SPRY4	0	genome.wustl.edu	37	5	141694224	141694224	+	Silent	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	5	141694224	141694224	G	A	SNP	SPRY4	ENST00000344120	human	ensembl	69_37n	-1	known	silent	c.519	p.P173	0.003	NULL	pfam_Sprouty	-	no_errors	SPRY4	HGNC	ENSG00000187678	53	0	0.00	27	5	15.62	-	-	-
TARSL2	0	genome.wustl.edu	37	15	102241331	102241331	+	Silent	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	15	102241331	102241331	G	A	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	silent	c.1278	p.P426	0.848	tigrfam_Thr-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	45	0	0.00	27	4	12.90	-	-	-
TMEM120B	0	genome.wustl.edu	37	12	122199620	122199620	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	12	122199620	122199620	G	T	SNP	TMEM120B	ENST00000342607	human	ensembl	69_37n	+1	known	missense	c.527	p.S176I	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735	52	0	0.00	11	3	21.43	-	-	-
TPCN2	0	genome.wustl.edu	37	11	68845965	68845965	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	11	68845965	68845965	G	A	SNP	TPCN2	ENST00000294309	human	ensembl	69_37n	+1	known	missense	c.1246	p.E416K	0.411	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	106	0	0.00	45	14	23.73	-	-	-
TRIM16L	0	genome.wustl.edu	37	17	18602476	18602476	+	RNA	SNP	A	A	G			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	17	18602476	18602476	A	G	SNP	TRIM16L	ENST00000449697	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.726	-	-	-	no_errors	TRIM16L	HGNC	ENSG00000108448	39	0	0.00	32	5	13.51	-	-	-
TSPAN5	0	genome.wustl.edu	37	4	99399888	99399888	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	4	99399888	99399888	G	T	SNP	TSPAN5	ENST00000305798	human	ensembl	69_37n	-1	known	missense	c.524	p.A175E	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785	56	0	0.00	33	5	13.16	-	-	-
ZFHX2	0	genome.wustl.edu	37	14	23996935	23996935	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	14	23996935	23996935	C	T	SNP	ZFHX2	ENST00000419474	human	ensembl	69_37n	-1	known	missense	c.3013	p.V1005M	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX2	HGNC	ENSG00000136367	31	0	0.00	19	6	24.00	-	-	-
ZNF676	0	genome.wustl.edu	37	19	22364026	22364026	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	19	22364026	22364026	T	C	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.493	p.R165G	0.900	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	82	0	0.00	45	13	22.41	-	-	-
ZSWIM3	0	genome.wustl.edu	37	20	44506742	44506742	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A426-01A-22D-A243-09	TCGA-A7-A426-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	73635f25-2d34-4846-ae87-eae8daa6150b	d22300e2-883a-46e2-9b64-7c19d28483bd	20	44506742	44506742	G	T	SNP	ZSWIM3	ENST00000255152	human	ensembl	69_37n	+1	known	missense	c.1545	p.E515D	1.000	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801	41	0	0.00	18	3	14.29	-	-	-
