Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD36BP2	0	genome.wustl.edu	37	2	89104384	89104384	+	RNA	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	2	89104384	89104384	G	A	SNP	ANKRD36BP2	ENST00000393515	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006	33	0	0.00	25	6	19.35	-	-	-
C16orf62	0	genome.wustl.edu	37	16	19702725	19702727	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	16	19702725	19702727	AAC	-	DEL	C16orf62	ENST00000438132	human	ensembl	69_37n	+1	known	in_frame_del	c.2845_2847	p.N950in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	35	0	0.00	25	19	42.22	-	-	-
CD1E	0	genome.wustl.edu	37	1	158326619	158326619	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	158326619	158326619	C	T	SNP	CD1E	ENST00000368167	human	ensembl	69_37n	+1	known	missense	c.1100	p.A367V	0.002	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1E	HGNC	ENSG00000158488	272	0	0.00	256	48	15.79	-	-	-
CELA2B	0	genome.wustl.edu	37	1	15802970	15802970	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	15802970	15802970	C	T	SNP	CELA2B	ENST00000375910	human	ensembl	69_37n	+1	known	missense	c.59	p.S20F	0.970	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704	76	0	0.00	53	23	30.26	-	-	-
CLCA2	0	genome.wustl.edu	37	1	86894174	86894174	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	86894174	86894174	G	A	SNP	CLCA2	ENST00000370565	human	ensembl	69_37n	+1	known	missense	c.398	p.G133E	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	197	0	0.00	141	33	18.97	-	-	-
COL27A1	0	genome.wustl.edu	37	9	116930357	116930357	+	Silent	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	9	116930357	116930357	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	69_37n	+1	known	silent	c.522	p.C174	0.992	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	23	0	0.00	14	9	39.13	-	-	-
DAB2IP	0	genome.wustl.edu	37	9	124519319	124519319	+	Silent	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	9	124519319	124519319	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	69_37n	+1	known	silent	c.390	p.E130	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848	32	0	0.00	12	4	25.00	-	-	-
EIF4A2	0	genome.wustl.edu	37	3	186503952	186503952	+	Splice_Site	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	186503952	186503952	G	A	SNP	EIF4A2	ENST00000440191	human	ensembl	69_37n	+1	known	splice_site	c.521-1	e6-1	1.000	-	-	-	no_errors	EIF4A2	HGNC	ENSG00000156976	99	0	0.00	53	22	29.33	-	-	-
ERBB2	0	genome.wustl.edu	37	17	37881332	37881332	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	17	37881332	37881332	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	+1	known	missense	c.2524	p.V842I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	79	0	0.00	19	14	41.18	-	-	-
FAM48A	0	genome.wustl.edu	37	13	37584782	37584782	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	13	37584782	37584782	C	T	SNP	FAM48A	ENST00000469488	human	ensembl	69_37n	-1	putative	missense	c.737	p.S246N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM48A	HGNC	ENSG00000102710	94	0	0.00	45	15	25.00	-	-	-
FAT3	0	genome.wustl.edu	37	11	92087511	92087511	+	Missense_Mutation	SNP	A	A	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	92087511	92087511	A	T	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	+1	known	missense	c.2233	p.I745F	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	428	0	0.00	204	113	35.65	-	-	-
FLI1	0	genome.wustl.edu	37	11	128680832	128680832	+	Silent	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	128680832	128680832	C	T	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	+1	known	silent	c.1308	p.V436	0.765	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	296	0	0.00	115	44	27.67	-	-	-
HCFC1	0	genome.wustl.edu	37	X	153224817	153224817	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	X	153224817	153224817	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1570	p.R524W	0.999	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	76	0	0.00	21	16	43.24	-	-	-
KIAA1804	0	genome.wustl.edu	37	1	233518401	233518401	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	233518401	233518401	A	G	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	+1	known	missense	c.3055	p.R1019G	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	159	0	0.00	169	43	20.28	-	-	-
LHX9	0	genome.wustl.edu	37	1	197889140	197889140	+	Silent	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	197889140	197889140	C	T	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	+1	known	silent	c.213	p.C71	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	85	0	0.00	51	14	21.54	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56177537	56177538	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	56177537	56177538	TG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.2510_2511	p.L838fs	1.000:0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	279	0	0.00	144	63	30.14	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178169	56178169	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	56178169	56178169	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.3142	p.Q1048*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	304	0	0.00	134	62	31.63	-	-	-
MST1P9	0	genome.wustl.edu	37	1	17085006	17085006	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	1	17085006	17085006	C	T	SNP	MST1P9	ENST00000334998	human	ensembl	69_37n	-1	known	missense	c.1469	p.G490E	0.998	superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	MST1P9	HGNC	ENSG00000186715	103	1	0.96	47	8	14.55	-	-	-
NR1H2	0	genome.wustl.edu	37	19	50882307	50882307	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	19	50882307	50882307	C	T	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	+1	known	missense	c.796	p.R266C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	50	0	0.00	24	16	40.00	-	-	-
PCDHGA5	0	genome.wustl.edu	37	5	140744719	140744719	+	Silent	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	140744719	140744719	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	+1	known	silent	c.822	p.N274	0.266	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	119	1	0.83	51	16	23.88	-	-	-
PDE6C	0	genome.wustl.edu	37	10	95380689	95380689	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	10	95380689	95380689	G	T	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	+1	known	missense	c.675	p.R225S	0.976	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	1250	0	0.00	889	398	30.92	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	252	0	0.00	131	52	28.42	-	-	-
RAD17	0	genome.wustl.edu	37	5	68684870	68684870	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	5	68684870	68684870	A	G	SNP	RAD17	ENST00000380774	human	ensembl	69_37n	+1	known	missense	c.937	p.K313E	1.000	tigrfam_Checkpoint_prot_Rad24_fun/met	tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942	63	0	0.00	36	18	33.33	-	-	-
RFC1	0	genome.wustl.edu	37	4	39308302	39308302	+	Silent	SNP	G	G	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	4	39308302	39308302	G	A	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	silent	c.1908	p.S636	0.022	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	81	0	0.00	55	10	15.15	-	-	-
RS1	0	genome.wustl.edu	37	X	18662718	18662718	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	X	18662718	18662718	G	C	SNP	RS1	ENST00000379984	human	ensembl	69_37n	-1	known	missense	c.354	p.D118E	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	RS1	HGNC	ENSG00000102104	191	0	0.00	225	25	10.00	-	-	-
RTN4RL2	0	genome.wustl.edu	37	11	57235333	57235333	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	11	57235333	57235333	T	A	SNP	RTN4RL2	ENST00000335099	human	ensembl	69_37n	+1	known	missense	c.283	p.S95T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907	213	0	0.00	88	39	30.71	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36252856	36252857	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	21	36252856	36252857	-	T	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.506_505	p.R169fs	1.000:0.998	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	108	0	0.00	43	15	25.86	-	-	-
SLC4A3	0	genome.wustl.edu	37	2	220504281	220504282	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	2	220504281	220504282	-	G	INS	SLC4A3	ENST00000273063	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3182_3183	p.L1064fs	1.000:1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923	53	0	0.00	39	6	13.33	-	-	-
TBL1XR1	0	genome.wustl.edu	37	3	176771560	176771560	+	Splice_Site	SNP	C	C	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	176771560	176771560	C	G	SNP	TBL1XR1	ENST00000430069	human	ensembl	69_37n	-1	known	splice_site	c.204+1	e2+1	1.000	-	-	-	no_errors	TBL1XR1	HGNC	ENSG00000177565	122	0	0.00	87	40	31.50	-	-	-
TPM1	0	genome.wustl.edu	37	15	63353074	63353074	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	15	63353074	63353074	C	G	SNP	TPM1	ENST00000267996	human	ensembl	69_37n	+1	known	missense	c.499	p.R167G	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416	59	0	0.00	27	9	25.00	-	-	-
USP13	0	genome.wustl.edu	37	3	179478911	179478911	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	3	179478911	179478911	G	C	SNP	USP13	ENST00000263966	human	ensembl	69_37n	+1	known	missense	c.1960	p.D654H	1.000	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP13	HGNC	ENSG00000058056	151	0	0.00	68	31	31.31	-	-	-
USP29	0	genome.wustl.edu	37	19	57640254	57640254	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	19	57640254	57640254	C	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	+1	known	missense	c.211	p.H71Y	0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	93	0	0.00	140	17	10.83	-	-	-
WDR67	0	genome.wustl.edu	37	8	124132397	124132397	+	Silent	SNP	C	C	T			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	96afb6d0-29ea-4bd5-8a9d-130e42954707	35c8c6d8-68b5-4175-9d5b-2859dc94a67a	8	124132397	124132397	C	T	SNP	WDR67	ENST00000287380	human	ensembl	69_37n	+1	known	silent	c.1539	p.L513	1.000	pfam_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	43	0	0.00	33	14	29.79	-	-	-
