Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADCY4	0	genome.wustl.edu	37	14	24800227	24800228	+	Frame_Shift_Ins	INS	-	-	AC			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	14	24800227	24800228	-	AC	INS	ADCY4	ENST00000310677	human	ensembl	69_37n	-1	known	frame_shift_ins	c.927_926	p.K310fs	0.998:1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467	42	0	0.00	20	1249	98.42	-	-	-
ANGPTL7	0	genome.wustl.edu	37	1	11254592	11254592	+	Silent	SNP	C	C	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	11254592	11254592	C	T	SNP	ANGPTL7	ENST00000376819	human	ensembl	69_37n	+1	known	silent	c.747	p.L249	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPTL7	HGNC	ENSG00000171819	119	0	0.00	96	46	32.39	-	-	-
C10orf120	0	genome.wustl.edu	37	10	124457723	124457723	+	Silent	SNP	T	T	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	124457723	124457723	T	A	SNP	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	silent	c.534	p.G178	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	212	0	0.00	143	64	30.48	-	-	-
C12orf56	0	genome.wustl.edu	37	12	64746720	64746720	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	64746720	64746720	C	A	SNP	C12orf56	ENST00000333722	human	ensembl	69_37n	-1	known	missense	c.369	p.R123S	0.836	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	82	0	0.00	115	49	29.88	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862203	68862204	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	68862203	68862204	-	C	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2291_2292	p.Q765fs	1.000:1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	122	0	0.00	110	72	39.56	-	-	-
CIITA	0	genome.wustl.edu	37	16	10996535	10996535	+	Silent	SNP	T	T	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	10996535	10996535	T	C	SNP	CIITA	ENST00000324288	human	ensembl	69_37n	+1	known	silent	c.649	p.L217	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	118	0	0.00	77	34	30.63	-	-	-
COMMD5	0	genome.wustl.edu	37	8	146076339	146076339	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	8	146076339	146076339	C	-	DEL	COMMD5	ENST00000450361	human	ensembl	69_37n	-1	known	frame_shift_del	c.385	p.V129fs	0.720	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD5	HGNC	ENSG00000170619	9	0	0.00	5	4	40.00	-	-	-
DOCK3	0	genome.wustl.edu	37	3	51417603	51417604	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	3	51417603	51417604	-	C	INS	DOCK3	ENST00000266037	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5548_5549	p.A1853fs	0.453:0.115	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	16	0	0.00	3	2	40.00	-	-	-
ESR2	0	genome.wustl.edu	37	14	64727440	64727440	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	14	64727440	64727440	G	A	SNP	ESR2	ENST00000341099	human	ensembl	69_37n	-1	known	missense	c.679	p.R227C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	64	0	0.00	52	19	26.76	-	-	-
FAM129A	0	genome.wustl.edu	37	1	184853799	184853799	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	184853799	184853799	A	-	DEL	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	frame_shift_del	c.569	p.L190fs	0.063	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	104	0	0.00	146	117	41.64	-	-	-
IRF3	0	genome.wustl.edu	37	19	50165439	50165439	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165439	50165439	T	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.748	p.M250fs	0.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	65	0	0.00	47	37	44.05	-	-	-
IRF3	0	genome.wustl.edu	37	19	50165449	50165449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165449	50165449	T	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.738	p.D247fs	0.945	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	63	0	0.00	44	37	45.68	-	-	-
IRF3	0	genome.wustl.edu	37	19	50165454	50165455	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	19	50165454	50165455	GT	-	DEL	IRF3	ENST00000309877	human	ensembl	69_37n	-1	known	frame_shift_del	c.733_732	p.L245fs	0.918:0.003	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	61	0	0.00	45	37	45.12	-	-	-
ITGA11	0	genome.wustl.edu	37	15	68624257	68624257	+	Silent	SNP	G	G	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	68624257	68624257	G	A	SNP	ITGA11	ENST00000315757	human	ensembl	69_37n	-1	known	silent	c.1710	p.H570	0.985	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	38	0	0.00	68	31	31.31	-	-	-
LPAR4	0	genome.wustl.edu	37	X	78011420	78011420	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	X	78011420	78011420	G	T	SNP	LPAR4	ENST00000373301	human	ensembl	69_37n	+1	known	nonsense	c.1054	p.E352*	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2Y5_purnocptor,prints_P2_purnocptor	-	no_errors	LPAR4	HGNC	ENSG00000147145	331	0	0.00	242	44	15.38	-	-	-
LSS	0	genome.wustl.edu	37	21	47626622	47626623	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	21	47626622	47626623	-	C	INS	LSS	ENST00000356396	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1528_1527	p.H509fs	0.000:0.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285	28	0	0.00	15	2	11.76	-	-	-
MAN2C1	0	genome.wustl.edu	37	15	75649184	75649184	+	Silent	SNP	G	G	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	75649184	75649184	G	A	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	silent	c.2607	p.N869	0.978	pfam_Glyco_hydro_38_C,superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	36	0	0.00	21	8	27.59	-	-	-
MBD1	0	genome.wustl.edu	37	18	47796443	47796443	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	18	47796443	47796443	G	C	SNP	MBD1	ENST00000339998	human	ensembl	69_37n	-1	known	missense	c.1591	p.Q531E	0.001	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	257	0	0.00	107	44	29.14	-	-	-
NHSL2	0	genome.wustl.edu	37	X	71359816	71359816	+	Silent	SNP	C	C	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	X	71359816	71359816	C	T	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	+1	known	silent	c.2418	p.G806	0.005	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	84	0	0.00	44	20	31.25	-	-	-
OR2L2	0	genome.wustl.edu	37	1	248202361	248202361	+	Silent	SNP	G	G	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	248202361	248202361	G	A	SNP	OR2L2	ENST00000366479	human	ensembl	69_37n	+1	known	silent	c.792	p.L264	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2L2	HGNC	ENSG00000203663	441	0	0.00	254	124	32.72	-	-	-
OSCP1	0	genome.wustl.edu	37	1	36887790	36887790	+	Missense_Mutation	SNP	A	A	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	36887790	36887790	A	C	SNP	OSCP1	ENST00000235532	human	ensembl	69_37n	-1	known	missense	c.780	p.H260Q	0.882	NULL	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885	64	0	0.00	97	35	26.52	-	-	-
PLEKHG4B	0	genome.wustl.edu	37	5	163330	163331	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	5	163330	163331	CC	-	DEL	PLEKHG4B	ENST00000283426	human	ensembl	69_37n	+1	known	frame_shift_del	c.2075_2076	p.A692fs	0.036:0.030	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404	14	0	0.00	11	15	46.88	-	-	-
PLXDC1	0	genome.wustl.edu	37	17	37235707	37235707	+	RNA	DEL	G	G	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	17	37235707	37235707	G	-	DEL	PLXDC1	ENST00000493200	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PLXDC1	HGNC	ENSG00000161381	8	0	0.00	6	12	63.16	-	-	-
PXDN	0	genome.wustl.edu	37	2	1653225	1653226	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	1653225	1653226	-	G	INS	PXDN	ENST00000252804	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2327_2326	p.N776fs	1.000:1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDN	HGNC	ENSG00000130508	63	0	0.00	28	86	75.44	-	-	-
SLC6A17	0	genome.wustl.edu	37	1	110740813	110740815	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	110740813	110740815	TCT	-	DEL	SLC6A17	ENST00000331565	human	ensembl	69_37n	+1	known	in_frame_del	c.1931_1933	p.LS644in_frame_delP	0.999:0.774:0.915	pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	40	0	0.00	24	14	36.84	-	-	-
SLK	0	genome.wustl.edu	37	10	105727649	105727650	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	105727649	105727650	-	T	INS	SLK	ENST00000369755	human	ensembl	69_37n	+1	known	frame_shift_ins	c.146_147	p.K50fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC	ENSG00000065613	71	0	0.00	15	17	53.12	-	-	-
TBX3	0	genome.wustl.edu	37	12	115118894	115118895	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	115118894	115118895	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.447_446	p.Y149fs	0.891:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	325	0	0.00	93	42	31.11	-	-	-
THSD7B	0	genome.wustl.edu	37	2	137814797	137814797	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	137814797	137814797	T	C	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	+1	known	missense	c.947	p.L316S	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	160	0	0.00	44	19	30.16	-	-	-
TLN2	0	genome.wustl.edu	37	15	63029121	63029121	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	63029121	63029121	C	T	SNP	TLN2	ENST00000306829	human	ensembl	69_37n	+1	known	nonsense	c.3403	p.Q1135*	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN2	HGNC	ENSG00000171914	48	0	0.00	43	78	64.46	-	-	-
TNK1	0	genome.wustl.edu	37	17	7291812	7291812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	17	7291812	7291812	G	-	DEL	TNK1	ENST00000576812	human	ensembl	69_37n	+1	known	frame_shift_del	c.1580	p.R527fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TNK1	HGNC	ENSG00000174292	70	0	0.00	7	7	50.00	-	-	-
TTC21B	0	genome.wustl.edu	37	2	166786867	166786867	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	166786867	166786867	C	T	SNP	TTC21B	ENST00000243344	human	ensembl	69_37n	-1	known	missense	c.902	p.R301H	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607	146	0	0.00	97	40	29.20	-	-	-
TTN	0	genome.wustl.edu	37	2	179434772	179434772	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	179434772	179434772	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.68383	p.R22795C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	138	0	0.00	92	49	34.75	-	-	-
UGGT1	0	genome.wustl.edu	37	2	128884987	128884987	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	128884987	128884987	A	G	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	+1	known	missense	c.1187	p.N396S	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	69	0	0.00	49	32	39.51	-	-	-
WNK2	0	genome.wustl.edu	37	9	96080102	96080102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	9	96080102	96080102	A	-	DEL	WNK2	ENST00000411624	human	ensembl	69_37n	+1	putative	frame_shift_del	c.5291	p.H1764fs	0.000	NULL	pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WNK2	HGNC	ENSG00000165238	16	0	0.00	8	18	69.23	-	-	-
WNK2	0	genome.wustl.edu	37	9	96080105	96080106	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	9	96080105	96080106	-	A	INS	WNK2	ENST00000411624	human	ensembl	69_37n	+1	putative	frame_shift_ins	c.5294_5295	p.W1766fs	0.001:0.004	NULL	pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	WNK2	HGNC	ENSG00000165238	16	0	0.00	7	18	72.00	-	-	-
