Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AKT3	0	genome.wustl.edu	37	1	243716076	243716076	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	243716076	243716076	G	C	SNP	AKT3	ENST00000263826	human	ensembl	69_37n	-1	known	missense	c.1118	p.A373G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom	-	no_errors	AKT3	HGNC	ENSG00000117020	63	0	0.00	55	8	12.70	-	-	-
AP3S1	0	genome.wustl.edu	37	5	115177803	115177804	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	5	115177803	115177804	-	A	INS	AP3S1	ENST00000316788	human	ensembl	69_37n	+1	known	frame_shift_ins	c.69_70	p.S23fs	1.000:1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP3S1	HGNC	ENSG00000177879	9	0	0.00	3	2	40.00	-	-	-
BMPR2	0	genome.wustl.edu	37	2	203417599	203417599	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	2	203417599	203417599	T	A	SNP	BMPR2	ENST00000374580	human	ensembl	69_37n	+1	known	missense	c.1574	p.M525K	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217	28	0	0.00	16	3	15.79	-	-	-
CCZ1	0	genome.wustl.edu	37	7	5944844	5944844	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	7	5944844	5944844	G	C	SNP	CCZ1	ENST00000325974	human	ensembl	69_37n	+1	known	missense	c.642	p.E214D	0.994	pfam_DUF1712_fun	pfam_DUF1712_fun	-	no_errors	CCZ1	HGNC	ENSG00000122674	46	0	0.00	25	5	16.67	-	-	-
CDH1	0	genome.wustl.edu	37	16	68835665	68835666	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	16	68835665	68835666	AA	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.256_257	p.R87fs	1.000:0.727	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	67	0	0.00	41	5	10.87	-	-	-
FAM131C	0	genome.wustl.edu	37	1	16386447	16386447	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	16386447	16386447	G	C	SNP	FAM131C	ENST00000375662	human	ensembl	69_37n	-1	known	missense	c.368	p.P123R	0.000	superfamily_Chromodomain-like	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519	12	0	0.00	4	6	60.00	-	-	-
GRM1	0	genome.wustl.edu	37	6	146720188	146720188	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	6	146720188	146720188	C	A	SNP	GRM1	ENST00000282753	human	ensembl	69_37n	+1	known	nonsense	c.2013	p.C671*	1.000	pfam_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5,pfscan_GPCR_3_C	-	no_errors	GRM1	HGNC	ENSG00000152822	58	0	0.00	36	5	12.20	-	-	-
KRTAP4-7	0	genome.wustl.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	17	39240627	39240627	T	C	SNP	KRTAP4-7	ENST00000391417	human	ensembl	69_37n	+1	known	missense	c.169	p.S57P	0.032	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871	44	0	0.00	34	5	12.82	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56176593	56176594	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	5	56176593	56176594	-	GA	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.2143_2144	p.L717fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	76	0	0.00	66	10	13.16	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	145075903	145075903	+	RNA	SNP	C	C	T			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	1	145075903	145075903	C	T	SNP	PDE4DIP	ENST00000528552	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	11	0	0.00	12	4	25.00	-	-	-
PTEN	0	genome.wustl.edu	37	10	89711975	89711975	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	10	89711975	89711975	T	A	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.593	p.M198K	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	57	0	0.00	39	7	15.22	-	-	-
QRICH1	0	genome.wustl.edu	37	3	49095083	49095083	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	3	49095083	49095083	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	69_37n	-1	known	missense	c.550	p.E184K	1.000	NULL	pfam_DUF3504,superfamily_DEATH-like	-	no_errors	QRICH1	HGNC	ENSG00000198218	44	0	0.00	25	4	13.79	-	-	-
RPTOR	0	genome.wustl.edu	37	17	78865584	78865584	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	17	78865584	78865584	T	C	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	+1	known	missense	c.2048	p.L683P	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	33	0	0.00	36	4	10.00	-	-	-
STK39	0	genome.wustl.edu	37	2	168869176	168869176	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	2	168869176	168869176	G	T	SNP	STK39	ENST00000355999	human	ensembl	69_37n	-1	known	missense	c.1466	p.A489D	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648	48	0	0.00	39	6	13.33	-	-	-
ZNF223	0	genome.wustl.edu	37	19	44570584	44570584	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	19	44570584	44570584	G	C	SNP	ZNF223	ENST00000591793	human	ensembl	69_37n	+1	known	missense	c.933	p.E311D	1.000	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	AC084219.2	Clone_based_vega_gene	ENSG00000267022	42	0	0.00	46	8	14.81	-	-	-
ZNF676	0	genome.wustl.edu	37	19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2FF-01A-11D-A17D-09	TCGA-AC-A2FF-11A-13D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81c6c068-2e8f-4130-a49d-099bdcf5f9f7	b5158fe2-6b24-4c31-907f-651d80f35943	19	22363737	22363737	C	G	SNP	ZNF676	ENST00000397121	human	ensembl	69_37n	-1	known	missense	c.782	p.G261A	0.018	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109	43	0	0.00	43	6	12.24	-	-	-
