Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS14	0	genome.wustl.edu	37	10	72511877	72511877	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	10	72511877	72511877	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	69_37n	+1	known	missense	c.2632	p.R878W	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	114	0	0.00	33	5	13.16	-	-	-
ANP32A	0	genome.wustl.edu	37	15	69079873	69079873	+	Missense_Mutation	SNP	A	A	C			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	69079873	69079873	A	C	SNP	ANP32A	ENST00000465139	human	ensembl	69_37n	-1	known	missense	c.206	p.L69R	1.000	NULL	pfam_Leu-rich_rpt,smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32A	HGNC	ENSG00000140350	58	0	0.00	28	11	28.21	-	-	-
ARPC5	0	genome.wustl.edu	37	1	183596216	183596216	+	RNA	SNP	G	G	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	1	183596216	183596216	G	A	SNP	ARPC5	ENST00000462965	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ARPC5	HGNC	ENSG00000162704	41	0	0.00	26	8	23.53	-	-	-
BAZ1A	0	genome.wustl.edu	37	14	35269544	35269544	+	Missense_Mutation	SNP	C	C	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	35269544	35269544	C	A	SNP	BAZ1A	ENST00000360310	human	ensembl	69_37n	-1	known	missense	c.1014	p.K338N	0.975	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604	25	0	0.00	12	6	33.33	-	-	-
BLMH	0	genome.wustl.edu	37	17	28598355	28598355	+	Silent	SNP	C	C	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	17	28598355	28598355	C	A	SNP	BLMH	ENST00000261714	human	ensembl	69_37n	-1	known	silent	c.1080	p.A360	0.575	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	pfam_Peptidase_C1B,pirsf_Peptidase_C1B	-	no_errors	BLMH	HGNC	ENSG00000108578	86	0	0.00	32	8	20.00	-	-	-
C1QTNF2	0	genome.wustl.edu	37	5	159781942	159781943	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	5	159781942	159781943	-	C	INS	C1QTNF2	ENST00000393975	human	ensembl	69_37n	-1	known	frame_shift_ins	c.212_211	p.D71fs	0.993:0.994	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861	51	0	0.00	13	2	13.33	-	-	-
CA2	0	genome.wustl.edu	37	8	86392979	86392979	+	Missense_Mutation	SNP	G	G	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	8	86392979	86392979	G	T	SNP	CA2	ENST00000285379	human	ensembl	69_37n	+1	known	missense	c.744	p.Q248H	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267	58	0	0.00	50	6	10.71	-	-	-
CCDC61	0	genome.wustl.edu	37	19	46506715	46506715	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	46506715	46506715	C	T	SNP	CCDC61	ENST00000263284	human	ensembl	69_37n	+1	known	nonsense	c.358	p.Q120*	1.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983	52	0	0.00	25	10	28.57	-	-	-
DMXL2	0	genome.wustl.edu	37	15	51780830	51780830	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	51780830	51780830	A	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	frame_shift_del	c.4966	p.S1656fs	0.997	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	56	0	0.00	10	2	16.67	-	-	-
EML5	0	genome.wustl.edu	37	14	89154694	89154694	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	89154694	89154694	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.2663	p.C888Y	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	126	0	0.00	34	18	34.62	-	-	-
ERBB4	0	genome.wustl.edu	37	2	212587168	212587168	+	Missense_Mutation	SNP	T	T	C			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	212587168	212587168	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	69_37n	-1	known	missense	c.833	p.N278S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	100	0	0.00	43	21	32.81	-	-	-
FBN3	0	genome.wustl.edu	37	19	8176940	8176940	+	Silent	SNP	G	G	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	8176940	8176940	G	A	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	silent	c.3882	p.H1294	0.566	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	61	0	0.00	25	4	13.79	-	-	-
FLRT2	0	genome.wustl.edu	37	14	86088823	86088823	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	14	86088823	86088823	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	69_37n	+1	known	missense	c.965	p.T322I	0.995	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	150	0	0.00	69	11	13.75	-	-	-
GALNT1	0	genome.wustl.edu	37	18	33257560	33257560	+	Missense_Mutation	SNP	A	A	G			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	18	33257560	33257560	A	G	SNP	GALNT1	ENST00000269195	human	ensembl	69_37n	+1	known	missense	c.320	p.K107R	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429	38	0	0.00	16	5	23.81	-	-	-
GBE1	0	genome.wustl.edu	37	3	81630320	81630320	+	Missense_Mutation	SNP	T	T	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	81630320	81630320	T	A	SNP	GBE1	ENST00000429644	human	ensembl	69_37n	-1	known	missense	c.1442	p.D481V	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	52	0	0.00	31	9	22.50	-	-	-
HOOK2	0	genome.wustl.edu	37	19	12875997	12875997	+	RNA	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	12875997	12875997	C	T	SNP	HOOK2	ENST00000589965	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HOOK2	HGNC	ENSG00000095066	34	0	0.00	11	4	26.67	-	-	-
HRCT1	0	genome.wustl.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	9	35906348	35906350	CTG	-	DEL	HRCT1	ENST00000354323	human	ensembl	69_37n	+1	known	in_frame_del	c.64_66	p.L25in_frame_del	0.168:0.493:0.516	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196	34	0	0.00	19	3	13.64	-	-	-
KLF11	0	genome.wustl.edu	37	2	10192480	10192480	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	10192480	10192480	G	A	SNP	KLF11	ENST00000305883	human	ensembl	69_37n	+1	known	missense	c.1385	p.R462H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059	53	0	0.00	24	7	22.58	-	-	-
LRBA	0	genome.wustl.edu	37	4	151199019	151199019	+	Missense_Mutation	SNP	C	C	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	4	151199019	151199019	C	A	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.4412	p.C1471F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	87	0	0.00	46	6	11.54	-	-	-
LRRTM1	0	genome.wustl.edu	37	2	80530774	80530774	+	Silent	SNP	G	G	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	2	80530774	80530774	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	69_37n	-1	known	silent	c.171	p.L57	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	30	0	0.00	13	10	43.48	-	-	-
MAML2	0	genome.wustl.edu	37	11	95712715	95712715	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	11	95712715	95712715	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	missense	c.2868	p.M956I	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	223	0	0.00	82	11	11.83	-	-	-
MYO5C	0	genome.wustl.edu	37	15	52510875	52510875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	52510875	52510875	T	-	DEL	MYO5C	ENST00000261839	human	ensembl	69_37n	-1	known	frame_shift_del	c.3795	p.A1266fs	0.210	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	53	0	0.00	13	2	13.33	-	-	-
NAAA	0	genome.wustl.edu	37	4	76835445	76835446	+	RNA	DEL	TT	TT	-			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	4	76835445	76835446	TT	-	DEL	NAAA	ENST00000511606	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	NAAA	HGNC	ENSG00000138744	29	0	0.00	15	2	11.76	-	-	-
NCOA7	0	genome.wustl.edu	37	6	126243859	126243859	+	Missense_Mutation	SNP	G	G	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	6	126243859	126243859	G	T	SNP	NCOA7	ENST00000368357	human	ensembl	69_37n	+1	known	missense	c.2402	p.G801V	1.000	smart_TLDc	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912	132	0	0.00	34	4	10.53	-	-	-
ODF3L2	0	genome.wustl.edu	37	19	474621	474621	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	19	474621	474621	C	T	SNP	ODF3L2	ENST00000315489	human	ensembl	69_37n	-1	known	missense	c.127	p.G43S	0.398	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	75	0	0.00	33	7	17.50	-	-	-
OS9	0	genome.wustl.edu	37	12	58088018	58088018	+	Missense_Mutation	SNP	C	C	G			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	12	58088018	58088018	C	G	SNP	OS9	ENST00000315970	human	ensembl	69_37n	+1	known	missense	c.74	p.T25S	0.008	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	53	0	0.00	21	13	38.24	-	-	-
OTUD7A	0	genome.wustl.edu	37	15	31947336	31947336	+	Silent	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	15	31947336	31947336	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	69_37n	-1	known	silent	c.114	p.T38	0.879	superfamily_UBA-like	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918	90	0	0.00	42	14	25.00	-	-	-
OXSM	0	genome.wustl.edu	37	3	25833071	25833071	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	25833071	25833071	T	-	DEL	OXSM	ENST00000280701	human	ensembl	69_37n	+1	known	frame_shift_del	c.560	p.M187fs	1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	55	0	0.00	29	13	30.23	-	-	-
PCDHB16	0	genome.wustl.edu	37	5	140563853	140563853	+	Silent	SNP	T	T	C			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	5	140563853	140563853	T	C	SNP	PCDHB16	ENST00000361016	human	ensembl	69_37n	+1	known	silent	c.1719	p.T573	0.897	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963	84	0	0.00	53	10	15.87	-	-	-
PCLO	0	genome.wustl.edu	37	7	82581718	82581718	+	Missense_Mutation	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	7	82581718	82581718	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.8551	p.A2851T	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	108	0	0.00	81	29	26.36	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	69	0	0.00	22	12	35.29	-	-	-
RREB1	0	genome.wustl.edu	37	6	7230726	7230726	+	Silent	SNP	G	G	C			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	6	7230726	7230726	G	C	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	+1	known	silent	c.2394	p.A798	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	9	0	0.00	0	5	100.00	-	-	-
TOM1L2	0	genome.wustl.edu	37	17	17786097	17786097	+	Silent	SNP	C	C	T			TCGA-AQ-A54O-01A-11D-A25Q-09	TCGA-AQ-A54O-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f4481d7e-4544-4c76-be94-4cdc1ccce963	f1b073ac-cdeb-482f-bc59-1e8376aa7cc6	17	17786097	17786097	C	T	SNP	TOM1L2	ENST00000379504	human	ensembl	69_37n	-1	known	silent	c.582	p.S194	0.025	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662	53	0	0.00	11	10	47.62	-	-	-
