Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSF3	0	genome.wustl.edu	37	16	89211720	89211721	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	89211720	89211721	GG	-	DEL	ACSF3	ENST00000317447	human	ensembl	69_37n	+1	known	frame_shift_del	c.1412_1413	p.R471fs	1.000:0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	384	0	0.00	24	30	53.57	-	-	-
ADAM23	0	genome.wustl.edu	37	2	207460860	207460861	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	207460860	207460861	-	C	INS	ADAM23	ENST00000264377	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2333_2334	p.K781fs	0.005:0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	299	0	0.00	162	18	10.00	-	-	-
ADAMTSL1	0	genome.wustl.edu	37	9	18680349	18680350	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	18680349	18680350	-	G	INS	ADAMTSL1	ENST00000327883	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1176_1177	p.I395fs	1.000:1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	153	0	0.00	36	6	14.29	-	-	-
ADARB1	0	genome.wustl.edu	37	21	46604943	46604943	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	21	46604943	46604943	C	T	SNP	ADARB1	ENST00000360697	human	ensembl	69_37n	+1	known	missense	c.1622	p.T541M	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,superfamily_Cytokine_IL1-like,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381	191	0	0.00	79	13	14.13	-	-	-
ADD1	0	genome.wustl.edu	37	4	2927786	2927786	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	2927786	2927786	A	-	DEL	ADD1	ENST00000264758	human	ensembl	69_37n	+1	known	frame_shift_del	c.1901	p.D634fs	0.999	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274	122	0	0.00	25	20	42.55	-	-	-
ALMS1	0	genome.wustl.edu	37	2	73677994	73677994	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	73677994	73677994	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	+1	known	missense	c.4337	p.H1446R	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	311	1	0.32	120	66	35.48	-	-	-
ATG16L2	0	genome.wustl.edu	37	11	72535862	72535862	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	72535862	72535862	T	C	SNP	ATG16L2	ENST00000321297	human	ensembl	69_37n	+1	known	missense	c.971	p.L324P	0.843	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Autophagy-rel_prot_16,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L2	HGNC	ENSG00000168010	204	0	0.00	50	11	18.03	-	-	-
ATP2A1	0	genome.wustl.edu	37	16	28913639	28913640	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	28913639	28913640	-	C	INS	ATP2A1	ENST00000357084	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2456_2457	p.R822fs	0.996:0.957	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	80	0	0.00	68	9	11.69	-	-	-
BCL7C	0	genome.wustl.edu	37	16	30899222	30899223	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	30899222	30899223	-	G	INS	BCL7C	ENST00000215115	human	ensembl	69_37n	-1	known	frame_shift_ins	c.618_617	p.L207fs	1.000:1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385	36	0	0.00	22	3	12.00	-	-	-
BLZF1	0	genome.wustl.edu	37	1	169347609	169347609	+	Silent	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	169347609	169347609	G	T	SNP	BLZF1	ENST00000329281	human	ensembl	69_37n	+1	known	silent	c.510	p.G170	0.958	NULL	pfam_DUF1721_fun	-	no_errors	BLZF1	HGNC	ENSG00000117475	494	0	0.00	231	50	17.73	-	-	-
BPIFB4	0	genome.wustl.edu	37	20	31671213	31671214	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	31671213	31671214	-	C	INS	BPIFB4	ENST00000375483	human	ensembl	69_37n	+1	known	frame_shift_ins	c.210_211	p.V73fs	0.020:0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191	131	0	0.00	44	6	12.00	-	-	-
C12orf42	0	genome.wustl.edu	37	12	103695959	103695960	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	103695959	103695960	-	G	INS	C12orf42	ENST00000378113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1010_1009	p.R337fs	0.034:0.030	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	44	0	0.00	59	9	13.24	-	-	-
C1QTNF5	0	genome.wustl.edu	37	11	119210189	119210190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	119210189	119210190	-	C	INS	C1QTNF5	ENST00000445041	human	ensembl	69_37n	-1	known	frame_shift_ins	c.584_583	p.A195fs	1.000:0.976	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953	200	1	0.50	94	11	10.48	-	-	-
CCDC108	0	genome.wustl.edu	37	2	219895498	219895498	+	Silent	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	219895498	219895498	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	silent	c.1074	p.A358	0.000	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	159	0	0.00	24	34	58.62	-	-	-
CCDC144A	0	genome.wustl.edu	37	17	16665677	16665677	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	16665677	16665677	T	A	SNP	CCDC144A	ENST00000360524	human	ensembl	69_37n	+1	known	missense	c.3717	p.N1239K	0.678	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	347	0	0.00	58	19	24.68	-	-	-
CCDC17	0	genome.wustl.edu	37	1	46086407	46086408	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	46086407	46086408	-	A	INS	CCDC17	ENST00000343901	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1602_1601	p.Q534fs	0.991:0.994	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588	244	0	0.00	66	48	42.11	-	-	-
CIC	0	genome.wustl.edu	37	19	42796882	42796883	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	42796882	42796883	-	C	INS	CIC	ENST00000160740	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3340_3341	p.S1117fs	1.000:0.993	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	CIC	HGNC	ENSG00000079432	106	0	0.00	9	2	18.18	-	-	-
CLDN11	0	genome.wustl.edu	37	3	170136900	170136900	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	170136900	170136900	G	A	SNP	CLDN11	ENST00000064724	human	ensembl	69_37n	+1	known	missense	c.46	p.V16M	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin11,prints_Claudin	-	no_errors	CLDN11	HGNC	ENSG00000013297	51	0	0.00	20	8	28.57	-	-	-
CPNE4	0	genome.wustl.edu	37	3	131388574	131388574	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	131388574	131388574	G	T	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	nonsense	c.680	p.S227*	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	176	0	0.00	108	43	28.48	-	-	-
CRABP1	0	genome.wustl.edu	37	15	78633562	78633562	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	78633562	78633562	G	C	SNP	CRABP1	ENST00000299529	human	ensembl	69_37n	+1	known	missense	c.248	p.R83T	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP1	HGNC	ENSG00000166426	103	0	0.00	39	34	46.58	-	-	-
CRTC3	0	genome.wustl.edu	37	15	91185257	91185258	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	91185257	91185258	-	T	INS	CRTC3	ENST00000268184	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1745_1746	p.E582fs	1.000:0.995	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577	124	0	0.00	36	37	50.68	-	-	-
CSRP2BP	0	genome.wustl.edu	37	20	18163939	18163940	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	18163939	18163940	-	T	INS	CSRP2BP	ENST00000278816	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1981_1982	p.P661fs	1.000:1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	310	0	0.00	194	826	80.98	-	-	-
CSRP2BP	0	genome.wustl.edu	37	20	18163944	18163945	+	Splice_Site	DEL	TA	TA	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	18163944	18163945	TA	-	DEL	CSRP2BP	ENST00000278816	human	ensembl	69_37n	+1	known	splice_site_del	c.1984+2_1984+1	e8+2	1.000:1.000	-	-	-	no_errors	CSRP2BP	HGNC	ENSG00000149474	306	0	0.00	179	767	80.82	-	-	-
CTNND2	0	genome.wustl.edu	37	5	11022988	11022988	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	11022988	11022988	G	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	nonsense	c.2892	p.C964*	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	735	1	0.14	518	166	24.27	-	-	-
CTNND2	0	genome.wustl.edu	37	5	11022989	11022989	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	11022989	11022989	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	69_37n	-1	known	missense	c.2891	p.C964Y	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	742	0	0.00	518	164	24.05	-	-	-
DCSTAMP	0	genome.wustl.edu	37	8	105361068	105361069	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	105361068	105361069	-	G	INS	DCSTAMP	ENST00000297581	human	ensembl	69_37n	+1	known	frame_shift_ins	c.288_289	p.A96fs	0.331:0.895	NULL	pfam_DC_STAMP-like,superfamily_ABC_transptrTM_dom_typ1	-	no_errors	DCSTAMP	HGNC	ENSG00000164935	337	0	0.00	325	289	47.07	-	-	-
DLX6	0	genome.wustl.edu	37	7	96635577	96635577	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	96635577	96635577	C	A	SNP	DLX6	ENST00000518156	human	ensembl	69_37n	+1	known	missense	c.288	p.H96Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	DLX6	HGNC	ENSG00000006377	21	0	0.00	7	4	36.36	-	-	-
EEA1	0	genome.wustl.edu	37	12	93170706	93170706	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	93170706	93170706	G	A	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	nonsense	c.4027	p.Q1343*	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	810	1	0.12	293	154	34.45	-	-	-
EIF2S3	0	genome.wustl.edu	37	X	24082440	24082440	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	24082440	24082440	C	A	SNP	EIF2S3	ENST00000253039	human	ensembl	69_37n	+1	known	missense	c.760	p.P254T	1.000	superfamily_Transl_elong_init/rib_B-barrel	pfam_ProtSyn_GTP-bd,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_ProtSyn_GTP-bd	-	no_errors	EIF2S3	HGNC	ENSG00000130741	307	0	0.00	129	51	28.33	-	-	-
EN1	0	genome.wustl.edu	37	2	119600568	119600568	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	119600568	119600568	C	A	SNP	EN1	ENST00000295206	human	ensembl	69_37n	-1	known	missense	c.1125	p.Q375H	1.000	pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,prints_Homeodomain_engrailed	pfam_Homeodomain,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064	149	0	0.00	77	10	11.49	-	-	-
ERLIN2	0	genome.wustl.edu	37	8	37607966	37607967	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607966	37607967	-	G	INS	ERLIN2	ENST00000276461	human	ensembl	69_37n	+1	known	frame_shift_ins	c.611_612	p.E206fs	1.000:0.996	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	294	0	0.00	166	77	31.69	-	-	-
ERLIN2	0	genome.wustl.edu	37	8	37607972	37607972	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607972	37607972	A	-	DEL	ERLIN2	ENST00000276461	human	ensembl	69_37n	+1	known	frame_shift_del	c.617	p.A207fs	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	294	0	0.00	164	76	31.67	-	-	-
ERLIN2	0	genome.wustl.edu	37	8	37607975	37607976	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	37607975	37607976	-	A	INS	ERLIN2	ENST00000276461	human	ensembl	69_37n	+1	known	frame_shift_ins	c.620_621	p.E208fs	1.000:0.000	NULL	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475	293	0	0.00	164	76	31.67	-	-	-
FAM22E	0	genome.wustl.edu	37	10	81606669	81606670	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	81606669	81606670	-	C	INS	FAM22E	ENST00000429984	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1166_1167	p.T390fs	0.012:0.014	NULL	NULL	-	no_errors	FAM22E	HGNC	ENSG00000228570	45	0	0.00	5	3	37.50	-	-	-
FAM70B	0	genome.wustl.edu	37	13	114498127	114498127	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	13	114498127	114498127	G	T	SNP	FAM70B	ENST00000375353	human	ensembl	69_37n	+1	known	missense	c.259	p.A87S	1.000	NULL	NULL	-	no_errors	FAM70B	HGNC	ENSG00000184497	396	1	0.25	288	166	36.40	-	-	-
FGF10	0	genome.wustl.edu	37	5	44388528	44388528	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	44388528	44388528	G	A	SNP	FGF10	ENST00000264664	human	ensembl	69_37n	-1	known	missense	c.257	p.T86I	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF	-	no_errors	FGF10	HGNC	ENSG00000070193	376	0	0.00	362	93	20.39	-	-	-
FGF18	0	genome.wustl.edu	37	5	170847438	170847438	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	170847438	170847438	C	A	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	+1	known	missense	c.60	p.F20L	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	197	0	0.00	49	10	16.95	-	-	-
FIGNL1	0	genome.wustl.edu	37	7	50514936	50514937	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	50514936	50514937	-	C	INS	FIGNL1	ENST00000356889	human	ensembl	69_37n	-1	known	frame_shift_ins	c.50_49	p.N17fs	1.000:1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436	160	0	0.00	38	55	59.14	-	-	-
FLNB	0	genome.wustl.edu	37	3	58124245	58124245	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	58124245	58124245	T	G	SNP	FLNB	ENST00000295956	human	ensembl	69_37n	+1	known	missense	c.5098	p.F1700V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	99	0	0.00	33	18	35.29	-	-	-
FNDC4	0	genome.wustl.edu	37	2	27717516	27717517	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	27717516	27717517	-	G	INS	FNDC4	ENST00000264703	human	ensembl	69_37n	-1	known	frame_shift_ins	c.31_30	p.S10fs	0.989:0.915	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226	64	0	0.00	19	3	13.64	-	-	-
FNDC9	0	genome.wustl.edu	37	5	156769909	156769910	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	156769909	156769910	-	C	INS	FNDC9	ENST00000312349	human	ensembl	69_37n	-1	known	frame_shift_ins	c.636_635	p.G213fs	0.000:0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	FNDC9	HGNC	ENSG00000172568	66	0	0.00	24	3	11.11	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29611972	29611972	+	RNA	DEL	T	T	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	29611972	29611972	T	-	DEL	FRG1B	ENST00000468180	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	33	0	0.00	9	2	13.33	-	-	-
FRRS1	0	genome.wustl.edu	37	1	100195231	100195231	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	100195231	100195231	C	-	DEL	FRRS1	ENST00000287474	human	ensembl	69_37n	-1	known	frame_shift_del	c.833	p.R278fs	1.000	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869	172	0	0.00	47	26	33.77	-	-	-
FSCN2	0	genome.wustl.edu	37	17	79496124	79496124	+	Silent	SNP	T	T	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	79496124	79496124	T	C	SNP	FSCN2	ENST00000334850	human	ensembl	69_37n	+1	known	silent	c.567	p.C189	0.831	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	15	0	0.00	0	32	100.00	-	-	-
FSCN2	0	genome.wustl.edu	37	17	79496125	79496125	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	79496125	79496125	G	C	SNP	FSCN2	ENST00000334850	human	ensembl	69_37n	+1	known	missense	c.568	p.D190H	1.000	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN2	HGNC	ENSG00000186765	16	0	0.00	0	35	100.00	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115952	8115953	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	8115952	8115953	-	CC	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1301_1302	p.H435fs	1.000:0.946	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	217	0	0.00	90	38	29.69	-	-	-
GCDH	0	genome.wustl.edu	37	19	13002750	13002750	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	13002750	13002750	G	C	SNP	GCDH	ENST00000222214	human	ensembl	69_37n	+1	known	missense	c.233	p.R78T	0.999	pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase	pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607	154	0	0.00	114	67	37.02	-	-	-
GNAZ	0	genome.wustl.edu	37	22	23438487	23438488	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	22	23438487	23438488	-	G	INS	GNAZ	ENST00000248996	human	ensembl	69_37n	+1	known	frame_shift_ins	c.605_606	p.Q205fs	1.000:1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266	276	0	0.00	31	4	11.43	-	-	-
GPR110	0	genome.wustl.edu	37	6	46976980	46976980	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	46976980	46976980	C	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.2191	p.D731Y	0.080	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	378	0	0.00	134	73	35.27	-	-	-
HEATR3	0	genome.wustl.edu	37	16	50136311	50136311	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	50136311	50136311	G	C	SNP	HEATR3	ENST00000299192	human	ensembl	69_37n	+1	known	missense	c.1885	p.A629P	0.974	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393	298	0	0.00	109	82	42.71	-	-	-
INO80E	0	genome.wustl.edu	37	16	30016652	30016653	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	30016652	30016653	-	C	INS	INO80E	ENST00000563197	human	ensembl	69_37n	+1	known	frame_shift_ins	c.624_625	p.T211fs	1.000:1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592	14	0	0.00	8	4	33.33	-	-	-
IP6K2	0	genome.wustl.edu	37	3	48730707	48730708	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	48730707	48730708	-	C	INS	IP6K2	ENST00000449563	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.267_266	p.L90fs	1.000:1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IP6K2	HGNC	ENSG00000068745	82	0	0.00	22	3	12.00	-	-	-
IP6K2	0	genome.wustl.edu	37	3	48730708	48730709	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	48730708	48730709	-	TC	INS	IP6K2	ENST00000449563	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.266_265	p.E89fs	1.000:1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	IP6K2	HGNC	ENSG00000068745	82	0	0.00	20	3	13.04	-	-	-
KBTBD6	0	genome.wustl.edu	37	13	41705321	41705322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	13	41705321	41705322	-	C	INS	KBTBD6	ENST00000379485	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1327_1326	p.R442fs	0.947:0.558	pfam_Kelch_1,smart_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572	282	0	0.00	153	17	10.00	-	-	-
KIAA1804	0	genome.wustl.edu	37	1	233490631	233490631	+	Silent	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	233490631	233490631	C	A	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	+1	known	silent	c.1185	p.L395	0.998	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	336	0	0.00	315	260	45.22	-	-	-
KLC1	0	genome.wustl.edu	37	14	104121136	104121137	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	14	104121136	104121137	-	A	INS	KLC1	ENST00000334553	human	ensembl	69_37n	+1	known	frame_shift_ins	c.235_236	p.L79fs	0.812:1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	304	0	0.00	102	48	32.00	-	-	-
KLHDC5	0	genome.wustl.edu	37	12	27950768	27950769	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	27950768	27950769	-	G	INS	KLHDC5	ENST00000381271	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1187_1188	p.C399fs	1.000:0.988	NULL	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHDC5	HGNC	ENSG00000087448	106	0	0.00	53	9	14.52	-	-	-
KLHL1	0	genome.wustl.edu	37	13	70281926	70281927	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	13	70281926	70281927	-	C	INS	KLHL1	ENST00000377844	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2018_2017	p.Y673fs	1.000:1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361	338	0	0.00	243	91	27.25	-	-	-
KYNU	0	genome.wustl.edu	37	2	143685297	143685298	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	143685297	143685298	-	T	INS	KYNU	ENST00000264170	human	ensembl	69_37n	+1	known	frame_shift_ins	c.360_361	p.K120fs	0.996:0.613	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	491	0	0.00	268	241	47.35	-	-	-
KYNU	0	genome.wustl.edu	37	2	143685303	143685306	+	Frame_Shift_Del	DEL	CATT	CATT	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CATT	CATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	143685303	143685306	CATT	-	DEL	KYNU	ENST00000264170	human	ensembl	69_37n	+1	known	frame_shift_del	c.366_369	p.D122fs	1.000:1.000:1.000:1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	476	0	0.00	250	206	45.18	-	-	-
LAMA3	0	genome.wustl.edu	37	18	21426463	21426463	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	18	21426463	21426463	C	-	DEL	LAMA3	ENST00000313654	human	ensembl	69_37n	+1	known	frame_shift_del	c.3922	p.R1308fs	0.032	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	52	0	0.00	15	2	11.76	-	-	-
LETM1	0	genome.wustl.edu	37	4	1843235	1843236	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	1843235	1843236	-	G	INS	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	frame_shift_ins	c.433_432	p.A144fs	0.000:0.000	NULL	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	141	0	0.00	96	13	11.93	-	-	-
LRG1	0	genome.wustl.edu	37	19	4538291	4538292	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	4538291	4538292	-	T	INS	LRG1	ENST00000306390	human	ensembl	69_37n	-1	known	frame_shift_ins	c.705_704	p.P236fs	0.012:0.019	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	146	0	0.00	44	181	80.44	-	-	-
LRIF1	0	genome.wustl.edu	37	1	111494582	111494582	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	111494582	111494582	C	-	DEL	LRIF1	ENST00000369763	human	ensembl	69_37n	-1	known	frame_shift_del	c.924	p.K308fs	1.000	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931	325	0	0.00	299	148	33.04	-	-	-
LRRC10	0	genome.wustl.edu	37	12	70004164	70004164	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	70004164	70004164	C	-	DEL	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	frame_shift_del	c.455	p.G152fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	180	0	0.00	53	137	72.11	-	-	-
MAGIX	0	genome.wustl.edu	37	X	49021387	49021387	+	Silent	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	49021387	49021387	C	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	+1	known	silent	c.466	p.L156	0.327	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	73	0	0.00	32	19	36.54	-	-	-
MAPRE3	0	genome.wustl.edu	37	2	27248516	27248517	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	27248516	27248517	-	C	INS	MAPRE3	ENST00000233121	human	ensembl	69_37n	+1	known	frame_shift_ins	c.535_536	p.C182fs	0.999:1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764	94	0	0.00	91	14	13.33	-	-	-
MED22	0	genome.wustl.edu	37	9	136208393	136208394	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	136208393	136208394	-	T	INS	MED22	ENST00000343730	human	ensembl	69_37n	-1	known	frame_shift_ins	c.565_564	p.S188fs	0.996:0.990	NULL	NULL	-	no_errors	MED22	HGNC	ENSG00000148297	54	0	0.00	10	2	16.67	-	-	-
MICAL2	0	genome.wustl.edu	37	11	12229617	12229617	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	12229617	12229617	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	69_37n	+1	known	missense	c.520	p.G174R	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,prints_Rng_hydrolase-like,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL2	HGNC	ENSG00000133816	725	0	0.00	661	126	15.99	-	-	-
MLL4	0	genome.wustl.edu	37	19	36224339	36224340	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	36224339	36224340	-	C	INS	MLL4	ENST00000222270	human	ensembl	69_37n	+1	known	frame_shift_ins	c.6889_6890	p.R2299fs	0.953:0.977	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	MLL4	Clone_based_vega_gene	ENSG00000105663	24	0	0.00	4	2	33.33	-	-	-
MRC1	0	genome.wustl.edu	37	10	18155569	18155569	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	18155569	18155569	C	A	SNP	MRC1	ENST00000239761	human	ensembl	69_37n	+1	known	missense	c.1862	p.A621E	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586	92	0	0.00	95	48	33.57	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1257711	1257711	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	1257711	1257711	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	frame_shift_del	c.2985	p.L996fs	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	86	0	0.00	4	2	33.33	-	-	-
MYH11	0	genome.wustl.edu	37	16	15802686	15802687	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	15802686	15802687	-	G	INS	MYH11	ENST00000452625	human	ensembl	69_37n	-1	known	frame_shift_ins	c.5820_5819	p.Q1941fs	1.000:1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392	85	0	0.00	34	7	17.07	-	-	-
NAIF1	0	genome.wustl.edu	37	9	130825869	130825869	+	Silent	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	130825869	130825869	G	T	SNP	NAIF1	ENST00000373078	human	ensembl	69_37n	-1	known	silent	c.822	p.A274	1.000	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	240	1	0.41	16	43	72.88	-	-	-
NELL1	0	genome.wustl.edu	37	11	21250897	21250897	+	Silent	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	21250897	21250897	C	T	SNP	NELL1	ENST00000357134	human	ensembl	69_37n	+1	known	silent	c.1446	p.S482	0.001	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	194	0	0.00	58	35	37.23	-	-	-
NINL	0	genome.wustl.edu	37	20	25485550	25485550	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	25485550	25485550	C	A	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.682	p.V228F	0.985	smart_EF_hand_Ca-bd	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	79	0	0.00	7	32	82.05	-	-	-
NR5A2	0	genome.wustl.edu	37	1	200143157	200143159	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	200143157	200143159	TGG	-	DEL	NR5A2	ENST00000367362	human	ensembl	69_37n	+1	known	in_frame_del	c.1445_1447	p.LD482in_frame_delH	1.000:1.000:1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	123	0	0.00	62	17	21.52	-	-	-
NYNRIN	0	genome.wustl.edu	37	14	24885799	24885799	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	14	24885799	24885799	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	+1	known	missense	c.4844	p.S1615L	0.788	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	104	0	0.00	20	10	33.33	-	-	-
OR10G9	0	genome.wustl.edu	37	11	123894140	123894140	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	123894140	123894140	G	A	SNP	OR10G9	ENST00000375024	human	ensembl	69_37n	+1	known	missense	c.421	p.A141T	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981	350	0	0.00	185	124	40.13	-	-	-
OR10Z1	0	genome.wustl.edu	37	1	158577066	158577066	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	158577066	158577066	G	T	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	+1	known	missense	c.838	p.V280L	1.000	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	457	1	0.22	239	104	30.23	-	-	-
PAPSS2	0	genome.wustl.edu	37	10	89505676	89505676	+	Silent	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	89505676	89505676	C	A	SNP	PAPSS2	ENST00000456849	human	ensembl	69_37n	+1	known	silent	c.1809	p.P603	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682	178	0	0.00	52	35	40.23	-	-	-
PAX6	0	genome.wustl.edu	37	11	31823284	31823286	+	In_Frame_Del	DEL	TAA	TAA	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	11	31823284	31823286	TAA	-	DEL	PAX6	ENST00000379107	human	ensembl	69_37n	-1	known	in_frame_del	c.224_222	p.Y75in_frame_del	1.000:1.000:1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeodomain,pfscan_Homeodomain,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372	401	0	0.00	204	126	38.18	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	112	0	0.00	22	4	15.38	-	-	-
PCDHA11	0	genome.wustl.edu	37	5	140250369	140250369	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	140250369	140250369	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	69_37n	+1	known	missense	c.1681	p.A561T	0.995	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158	130	0	0.00	12	9	42.86	-	-	-
PKHD1	0	genome.wustl.edu	37	6	51484109	51484110	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	51484109	51484110	-	C	INS	PKHD1	ENST00000371117	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11995_11994	p.W3998fs	0.961:0.735	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT_TIG_rcpt,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	134	0	0.00	54	43	44.33	-	-	-
PLA2G15	0	genome.wustl.edu	37	16	68289854	68289855	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	68289854	68289855	-	G	INS	PLA2G15	ENST00000219345	human	ensembl	69_37n	+1	known	frame_shift_ins	c.688_689	p.V233fs	1.000:1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066	71	0	0.00	29	4	12.12	-	-	-
PLK4	0	genome.wustl.edu	37	4	128807873	128807873	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	4	128807873	128807873	A	-	DEL	PLK4	ENST00000270861	human	ensembl	69_37n	+1	known	frame_shift_del	c.1348	p.N450fs	0.094	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	207	0	0.00	39	19	31.67	-	-	-
PLSCR3	0	genome.wustl.edu	37	17	7294058	7294059	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	7294058	7294059	-	C	INS	PLSCR3	ENST00000324822	human	ensembl	69_37n	-1	known	frame_shift_ins	c.726_725	p.L243fs	0.637:1.000	pfam_Scramblase,superfamily_Tubby_C-like	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR3	HGNC	ENSG00000187838	194	0	0.00	33	4	10.81	-	-	-
PRAMEF11	0	genome.wustl.edu	37	1	12887458	12887458	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	12887458	12887458	C	A	SNP	PRAMEF11	ENST00000535591	human	ensembl	69_37n	-1	known	missense	c.399	p.Q133H	0.112	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	386	0	0.00	138	155	52.90	-	-	-
PROSAPIP1	0	genome.wustl.edu	37	20	3146923	3146924	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	3146923	3146924	-	G	INS	PROSAPIP1	ENST00000329152	human	ensembl	69_37n	-1	known	frame_shift_ins	c.543_542	p.Q182fs	0.989:1.000	NULL	pfam_Fez1	-	no_errors	RP5-1187M17.10	Clone_based_vega_gene	ENSG00000088899	189	0	0.00	26	3	10.34	-	-	-
PVRL3	0	genome.wustl.edu	37	3	110845147	110845147	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	110845147	110845147	G	T	SNP	PVRL3	ENST00000485303	human	ensembl	69_37n	+1	known	missense	c.1034	p.G345V	1.000	pfscan_Ig-like	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	PVRL3	HGNC	ENSG00000177707	543	0	0.00	319	96	23.13	-	-	-
RBM20	0	genome.wustl.edu	37	10	112581637	112581638	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	112581637	112581638	-	C	INS	RBM20	ENST00000369519	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3260_3261	p.I1090fs	0.969:0.936	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	RBM20	HGNC	ENSG00000203867	133	0	0.00	46	6	11.54	-	-	-
RELN	0	genome.wustl.edu	37	7	103191642	103191642	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	103191642	103191642	G	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	nonsense	c.6174	p.C2058*	1.000	superfamily_Neuraminidase	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	78	0	0.00	34	8	19.05	-	-	-
RIPK1	0	genome.wustl.edu	37	6	3077011	3077012	+	RNA	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	6	3077011	3077012	-	G	INS	RIPK1	ENST00000490396	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RIPK1	HGNC	ENSG00000137275	92	0	0.00	71	12	14.46	-	-	-
RPAP1	0	genome.wustl.edu	37	15	41815547	41815549	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	15	41815547	41815549	GCT	-	DEL	RPAP1	ENST00000304330	human	ensembl	69_37n	-1	known	in_frame_del	c.2442_2440	p.S815in_frame_del	0.000:0.000:0.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	62	0	0.00	64	69	50.00	-	-	-
RPAP2	0	genome.wustl.edu	37	1	92789086	92789086	+	Silent	SNP	A	A	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	92789086	92789086	A	G	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	+1	known	silent	c.609	p.Q203	0.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	371	0	0.00	147	79	34.80	-	-	-
SEMA5A	0	genome.wustl.edu	37	5	9202176	9202176	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	5	9202176	9202176	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.823	p.R275S	0.975	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	235	0	0.00	88	50	36.23	-	-	-
SETDB1	0	genome.wustl.edu	37	1	150917623	150917624	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	1	150917623	150917624	-	G	INS	SETDB1	ENST00000368962	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1179_1180	p.T396fs	0.000:0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379	300	0	0.00	452	65	12.57	-	-	-
SLC18A2	0	genome.wustl.edu	37	10	119014791	119014792	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	119014791	119014792	-	C	INS	SLC18A2	ENST00000298472	human	ensembl	69_37n	+1	known	frame_shift_ins	c.704_705	p.F238fs	1.000:0.136	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	168	0	0.00	52	6	10.34	-	-	-
SMTN	0	genome.wustl.edu	37	22	31487798	31487799	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	22	31487798	31487799	-	C	INS	SMTN	ENST00000347557	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1597_1598	p.S536fs	1.000:0.994	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963	75	0	0.00	10	3	23.08	-	-	-
SPDYE1	0	genome.wustl.edu	37	7	44047341	44047341	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	44047341	44047341	G	A	SNP	SPDYE1	ENST00000258704	human	ensembl	69_37n	+1	known	missense	c.985	p.A329T	0.393	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE1	HGNC	ENSG00000136206	172	0	0.00	30	17	35.42	-	-	-
SSPO	0	genome.wustl.edu	37	7	149501109	149501110	+	RNA	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	7	149501109	149501110	-	G	INS	SSPO	ENST00000378016	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	28	0	0.00	5	2	28.57	-	-	-
STAT6	0	genome.wustl.edu	37	12	57499093	57499094	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	12	57499093	57499094	-	G	INS	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	frame_shift_ins	c.842_841	p.Q281fs	1.000:1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	111	0	0.00	50	7	12.28	-	-	-
SULF1	0	genome.wustl.edu	37	8	70550743	70550743	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	8	70550743	70550743	C	A	SNP	SULF1	ENST00000260128	human	ensembl	69_37n	+1	known	missense	c.2291	p.S764Y	0.918	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	618	0	0.00	448	329	41.91	-	-	-
TAF1C	0	genome.wustl.edu	37	16	84217059	84217059	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	84217059	84217059	C	T	SNP	TAF1C	ENST00000378541	human	ensembl	69_37n	-1	known	missense	c.275	p.R92Q	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168	132	0	0.00	15	9	37.50	-	-	-
TET3	0	genome.wustl.edu	37	2	74329151	74329152	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	74329151	74329152	-	G	INS	TET3	ENST00000409262	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4831_4832	p.T1614fs	1.000:1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	18	0	0.00	28	5	15.15	-	-	-
TFE3	0	genome.wustl.edu	37	X	48887951	48887952	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	X	48887951	48887952	-	C	INS	TFE3	ENST00000315869	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1446_1445	p.P483fs	0.035:0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TFE3	HGNC	ENSG00000068323	115	1	0.86	101	16	13.68	-	-	-
TRMT2A	0	genome.wustl.edu	37	22	20103700	20103700	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	22	20103700	20103700	T	-	DEL	TRMT2A	ENST00000252136	human	ensembl	69_37n	-1	known	frame_shift_del	c.460	p.R154fs	1.000	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899	117	0	0.00	1	9	90.00	-	-	-
TSNAXIP1	0	genome.wustl.edu	37	16	67859154	67859155	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	16	67859154	67859155	-	G	INS	TSNAXIP1	ENST00000388833	human	ensembl	69_37n	+1	known	frame_shift_ins	c.631_632	p.M211fs	1.000:1.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904	213	0	0.00	68	30	30.61	-	-	-
U2AF2	0	genome.wustl.edu	37	19	56173905	56173906	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	56173905	56173906	-	G	INS	U2AF2	ENST00000308924	human	ensembl	69_37n	+1	known	frame_shift_ins	c.524_525	p.L178fs	0.991:0.923	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244	126	0	0.00	37	6	13.95	-	-	-
USP20	0	genome.wustl.edu	37	9	132623252	132623253	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	9	132623252	132623253	CC	-	DEL	USP20	ENST00000315480	human	ensembl	69_37n	+1	known	frame_shift_del	c.367_368	p.P123fs	1.000:1.000	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP20	HGNC	ENSG00000136878	248	0	0.00	14	103	85.83	-	-	-
WDR96	0	genome.wustl.edu	37	10	105953739	105953739	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	10	105953739	105953739	A	T	SNP	WDR96	ENST00000357060	human	ensembl	69_37n	-1	known	missense	c.1327	p.S443T	0.126	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748	55	0	0.00	27	12	30.77	-	-	-
WNT7A	0	genome.wustl.edu	37	3	13896104	13896104	+	Silent	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	3	13896104	13896104	G	A	SNP	WNT7A	ENST00000285018	human	ensembl	69_37n	-1	known	silent	c.495	p.V165	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	151	0	0.00	47	90	65.69	-	-	-
WRAP53	0	genome.wustl.edu	37	17	7606714	7606715	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	17	7606714	7606715	-	G	INS	WRAP53	ENST00000316024	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1557_1558	p.A521fs	1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	148	0	0.00	38	7	15.56	-	-	-
ZNF514	0	genome.wustl.edu	37	2	95815222	95815223	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	2	95815222	95815223	-	CG	INS	ZNF514	ENST00000295208	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1008_1007	p.R336fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	409	0	0.00	236	119	33.52	-	-	-
ZNF556	0	genome.wustl.edu	37	19	2878290	2878290	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	19	2878290	2878290	G	A	SNP	ZNF556	ENST00000307635	human	ensembl	69_37n	+1	known	missense	c.1334	p.R445K	0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000	100	0	0.00	20	11	35.48	-	-	-
ZNF831	0	genome.wustl.edu	37	20	57769139	57769140	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A0TY-01A-12W-A12T-09	TCGA-AR-A0TY-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f915733b-aaf4-406d-af52-00de113e8e0c	f5cfd725-897e-4728-91bc-ba3957d43764	20	57769139	57769140	-	G	INS	ZNF831	ENST00000371030	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.3065_3066	p.D1025fs	0.000:0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	59	0	0.00	20	3	13.04	-	-	-
