Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALX1	0	genome.wustl.edu	37	12	85680747	85680747	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	12	85680747	85680747	C	A	SNP	ALX1	ENST00000316824	human	ensembl	69_37n	+1	known	missense	c.648	p.D216E	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	ALX1	HGNC	ENSG00000180318	45	0	0.00	40	20	33.33	-	-	-
APOB	0	genome.wustl.edu	37	2	21245741	21245741	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	21245741	21245741	A	C	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	missense	c.2778	p.I926M	0.875	pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	44	0	0.00	30	13	30.23	-	-	-
CCDC78	0	genome.wustl.edu	37	16	775286	775286	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	16	775286	775286	G	A	SNP	CCDC78	ENST00000293889	human	ensembl	69_37n	-1	known	missense	c.443	p.P148L	0.013	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004	32	0	0.00	34	10	22.73	-	-	-
CCDC80	0	genome.wustl.edu	37	3	112357487	112357487	+	Silent	SNP	C	C	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	112357487	112357487	C	T	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	silent	c.1266	p.Q422	0.320	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	79	0	0.00	53	20	27.40	-	-	-
CD53	0	genome.wustl.edu	37	1	111435055	111435055	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	111435055	111435055	C	G	SNP	CD53	ENST00000271324	human	ensembl	69_37n	+1	known	missense	c.152	p.T51R	0.999	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD53	HGNC	ENSG00000143119	131	0	0.00	97	47	32.64	-	-	-
CD5L	0	genome.wustl.edu	37	1	157805923	157805923	+	Silent	SNP	C	C	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	157805923	157805923	C	A	SNP	CD5L	ENST00000368174	human	ensembl	69_37n	-1	known	silent	c.78	p.L26	0.999	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	CD5L	HGNC	ENSG00000073754	48	0	0.00	31	12	27.91	-	-	-
CD72	0	genome.wustl.edu	37	9	35612972	35612972	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	9	35612972	35612972	C	G	SNP	CD72	ENST00000259633	human	ensembl	69_37n	-1	known	missense	c.707	p.G236A	0.998	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD72	HGNC	ENSG00000137101	101	0	0.00	82	25	23.36	-	-	-
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	17	45219311	45219311	T	C	SNP	CDC27	ENST00000531206	human	ensembl	69_37n	-1	known	missense	c.1477	p.I493V	1.000	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	20	0	0.00	36	8	18.18	-	-	-
CHRNB4	0	genome.wustl.edu	37	15	78927917	78927917	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	78927917	78927917	A	G	SNP	CHRNB4	ENST00000261751	human	ensembl	69_37n	-1	known	missense	c.68	p.V23A	0.542	tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	187	0	0.00	114	39	25.49	-	-	-
CNPY3	0	genome.wustl.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	42897358	42897360	TGC	-	DEL	CNPY3	ENST00000372836	human	ensembl	69_37n	+1	known	in_frame_del	c.50_52	p.L21in_frame_del	0.122:0.131:0.153	NULL	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	10	0	0.00	15	4	21.05	-	-	-
CSPG4	0	genome.wustl.edu	37	15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	75982085	75982085	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.1321	p.E441K	0.996	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	14	0	0.00	12	5	29.41	-	-	-
DCAF6	0	genome.wustl.edu	37	1	168044671	168044671	+	Nonstop_Mutation	SNP	T	T	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	168044671	168044671	T	A	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	+1	known	nonstop	c.2854	p.*952K	0.355	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	74	0	0.00	124	51	28.81	-	-	-
DYNC2H1	0	genome.wustl.edu	37	11	103116068	103116069	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116068	103116069	TT	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	+1	known	frame_shift_del	c.10028_10029	p.Y3344fs	1.000:0.983	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	53	0	0.00	57	7	10.94	-	-	-
DYNC2H1	0	genome.wustl.edu	37	11	103116072	103116073	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116072	103116073	TC	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	69_37n	+1	known	frame_shift_del	c.10032_10033	p.P3345fs	1.000:1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	52	0	0.00	56	7	11.11	-	-	-
ETV5	0	genome.wustl.edu	37	3	185783746	185783746	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	185783746	185783746	G	A	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.892	p.P298S	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	46	0	0.00	69	23	25.00	-	-	-
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	69_37n	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111B	HGNC	ENSG00000189057	22	0	0.00	28	4	12.50	-	-	-
FGA	0	genome.wustl.edu	37	4	155507138	155507138	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	155507138	155507138	T	G	SNP	FGA	ENST00000302053	human	ensembl	69_37n	-1	known	missense	c.1443	p.E481D	0.995	pfam_Fibrinogen_aC	pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	FGA	HGNC	ENSG00000171560	69	0	0.00	63	9	12.50	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685218	23685220	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	23685218	23685220	CTC	-	DEL	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	in_frame_del	c.2404_2402	p.G801in_frame_del	0.015:0.016:0.021	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	34	0	0.00	45	6	11.76	-	-	-
HAPLN3	0	genome.wustl.edu	37	15	89424727	89424727	+	Silent	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	89424727	89424727	G	A	SNP	HAPLN3	ENST00000359595	human	ensembl	69_37n	-1	known	silent	c.354	p.R118	0.551	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like	-	no_errors	HAPLN3	HGNC	ENSG00000140511	22	0	0.00	22	5	18.52	-	-	-
HLA-B	0	genome.wustl.edu	37	6	31323974	31323974	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	31323974	31323974	C	T	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	nonsense	c.591	p.W197*	0.903	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	21	0	0.00	12	4	25.00	-	-	-
HLA-B	0	genome.wustl.edu	37	6	31324104	31324104	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	31324104	31324104	G	A	SNP	HLA-B	ENST00000426590	human	ensembl	69_37n	-1	known	missense	c.461	p.T154I	0.113	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-B	HGNC	ENSG00000234745	12	0	0.00	6	3	33.33	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118221786	118221786	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	X	118221786	118221786	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3407	p.S1136Y	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	47	0	0.00	31	4	11.43	-	-	-
KNDC1	0	genome.wustl.edu	37	10	135020480	135020480	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	10	135020480	135020480	T	A	SNP	KNDC1	ENST00000368571	human	ensembl	69_37n	+1	putative	missense	c.3407	p.L1136H	0.000	NULL	superfamily_Kinase-like_dom,smart_KIND	-	no_errors	KNDC1	HGNC	ENSG00000171798	40	0	0.00	39	8	17.02	-	-	-
LAMP5	0	genome.wustl.edu	37	20	9498735	9498735	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	9498735	9498735	C	G	SNP	LAMP5	ENST00000246070	human	ensembl	69_37n	+1	known	missense	c.524	p.P175R	1.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop	-	no_errors	LAMP5	HGNC	ENSG00000125869	54	0	0.00	27	16	37.21	-	-	-
MED24	0	genome.wustl.edu	37	17	38176104	38176104	+	Silent	SNP	C	C	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	17	38176104	38176104	C	T	SNP	MED24	ENST00000394128	human	ensembl	69_37n	-1	known	silent	c.2787	p.E929	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	33	0	0.00	24	27	52.94	-	-	-
MN1	0	genome.wustl.edu	37	22	28195783	28195783	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	22	28195783	28195783	G	C	SNP	MN1	ENST00000302326	human	ensembl	69_37n	-1	known	missense	c.749	p.S250C	0.990	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	17	0	0.00	14	8	36.36	-	-	-
MYO7A	0	genome.wustl.edu	37	11	76903324	76903324	+	Splice_Site	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	76903324	76903324	G	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	+1	known	splice_site	c.4152+1	e30+1	1.000	-	-	-	no_errors	MYO7A	HGNC	ENSG00000137474	64	0	0.00	45	21	31.82	-	-	-
NFKB1	0	genome.wustl.edu	37	4	103501694	103501694	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	103501694	103501694	G	A	SNP	NFKB1	ENST00000226574	human	ensembl	69_37n	+1	known	missense	c.733	p.A245T	1.000	superfamily_p53-like_TF_DNA-bd,prints_NF_Rel_dor,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD	-	no_errors	NFKB1	HGNC	ENSG00000109320	77	0	0.00	88	17	16.19	-	-	-
NMS	0	genome.wustl.edu	37	2	101087011	101087011	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	101087011	101087011	C	T	SNP	NMS	ENST00000376865	human	ensembl	69_37n	+1	known	nonsense	c.61	p.Q21*	0.008	NULL	pfam_NMU_C	-	no_errors	NMS	HGNC	ENSG00000204640	169	0	0.00	104	53	33.76	-	-	-
OR10S1	0	genome.wustl.edu	37	11	123848195	123848195	+	Silent	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	123848195	123848195	G	T	SNP	OR10S1	ENST00000531945	human	ensembl	69_37n	-1	known	silent	c.204	p.L68	0.355	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248	46	0	0.00	22	14	38.89	-	-	-
PADI2	0	genome.wustl.edu	37	1	17395659	17395659	+	Silent	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	17395659	17395659	G	T	SNP	PADI2	ENST00000375486	human	ensembl	69_37n	-1	known	silent	c.1878	p.G626	0.996	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115	42	0	0.00	35	4	10.26	-	-	-
PDE1A	0	genome.wustl.edu	37	2	183088590	183088590	+	Splice_Site	DEL	C	C	-			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	183088590	183088590	C	-	DEL	PDE1A	ENST00000456212	human	ensembl	69_37n	-1	known	splice_site_del	c.824+1	e7+1	1.000	-	-	-	no_errors	PDE1A	HGNC	ENSG00000115252	73	0	0.00	89	39	30.23	-	-	-
PDYN	0	genome.wustl.edu	37	20	1961218	1961218	+	Silent	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	1961218	1961218	G	C	SNP	PDYN	ENST00000217305	human	ensembl	69_37n	-1	known	silent	c.516	p.V172	1.000	prints_Opioid_neupept	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327	62	0	0.00	51	20	28.17	-	-	-
PIWIL4	0	genome.wustl.edu	37	11	94331003	94331003	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	94331003	94331003	G	C	SNP	PIWIL4	ENST00000299001	human	ensembl	69_37n	+1	known	missense	c.1302	p.W434C	1.000	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627	116	0	0.00	63	46	42.20	-	-	-
PKHD1L1	0	genome.wustl.edu	37	8	110464392	110464392	+	Silent	SNP	C	C	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	110464392	110464392	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	+1	known	silent	c.6390	p.A2130	0.024	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	64	0	0.00	48	21	30.43	-	-	-
PLEK	0	genome.wustl.edu	37	2	68613653	68613653	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	68613653	68613653	G	T	SNP	PLEK	ENST00000234313	human	ensembl	69_37n	+1	known	missense	c.492	p.W164C	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK	HGNC	ENSG00000115956	65	0	0.00	64	22	25.58	-	-	-
PTCHD2	0	genome.wustl.edu	37	1	11591069	11591069	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	11591069	11591069	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	69_37n	+1	known	missense	c.3208	p.G1070R	1.000	NULL	pfam_Patched,pfam_MMPL-typ,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	29	0	0.00	22	8	26.67	-	-	-
RALGAPB	0	genome.wustl.edu	37	20	37177413	37177413	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	37177413	37177413	C	G	SNP	RALGAPB	ENST00000262879	human	ensembl	69_37n	+1	known	missense	c.2984	p.P995R	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	116	0	0.00	160	32	16.67	-	-	-
SERPINA12	0	genome.wustl.edu	37	14	94953679	94953679	+	Silent	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	14	94953679	94953679	C	G	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	silent	c.1206	p.V402	0.039	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	24	0	0.00	14	12	46.15	-	-	-
TCF4	0	genome.wustl.edu	37	18	52899822	52899822	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	18	52899822	52899822	G	C	SNP	TCF4	ENST00000398339	human	ensembl	69_37n	-1	known	missense	c.1873	p.L625V	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCF4	HGNC	ENSG00000196628	80	0	0.00	68	21	23.60	-	-	-
TNFRSF11B	0	genome.wustl.edu	37	8	119936866	119936866	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	119936866	119936866	G	C	SNP	TNFRSF11B	ENST00000297350	human	ensembl	69_37n	-1	known	missense	c.953	p.A318G	0.007	pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	163	0	0.00	117	39	25.00	-	-	-
TRIM60	0	genome.wustl.edu	37	4	165961691	165961691	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	165961691	165961691	A	G	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	+1	known	missense	c.467	p.E156G	0.006	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	55	0	0.00	26	22	45.83	-	-	-
TRIM66	0	genome.wustl.edu	37	11	8670021	8670021	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	8670021	8670021	C	G	SNP	TRIM66	ENST00000299550	human	ensembl	69_37n	-1	known	missense	c.232	p.E78Q	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_B-box,smart_Znf_PHD,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	TRIM66	HGNC	ENSG00000166436	73	0	0.00	45	21	31.82	-	-	-
TTF2	0	genome.wustl.edu	37	1	117618034	117618034	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	117618034	117618034	G	C	SNP	TTF2	ENST00000369466	human	ensembl	69_37n	+1	known	missense	c.828	p.Q276H	0.004	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830	19	0	0.00	21	8	27.59	-	-	-
ULK4	0	genome.wustl.edu	37	3	41942265	41942265	+	Silent	SNP	G	G	A			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	41942265	41942265	G	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	silent	c.1239	p.I413	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	72	0	0.00	105	25	19.23	-	-	-
UNC13A	0	genome.wustl.edu	37	19	17728543	17728543	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	17728543	17728543	A	G	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.4790	p.I1597T	1.000	pfam_Munc13_subgr_dom-2	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	51	0	0.00	52	19	26.76	-	-	-
ZNF76	0	genome.wustl.edu	37	6	35262260	35262260	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	35262260	35262260	G	T	SNP	ZNF76	ENST00000373953	human	ensembl	69_37n	+1	known	missense	c.1522	p.V508L	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029	128	0	0.00	119	17	12.50	-	-	-
