Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APPL2	0	genome.wustl.edu	37	12	105605050	105605050	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	105605050	105605050	T	C	SNP	APPL2	ENST00000551662	human	ensembl	69_37n	-1	known	missense	c.331	p.M111V	0.996	NULL	pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom	-	no_errors	APPL2	HGNC	ENSG00000136044	74	0	0.00	87	10	10.31	-	-	-
CHD6	0	genome.wustl.edu	37	20	40065975	40065975	+	Splice_Site	SNP	C	C	G			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	20	40065975	40065975	C	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	splice_site	c.4008-1	e26-1	1.000	-	-	-	no_errors	CHD6	HGNC	ENSG00000124177	63	0	0.00	66	22	25.00	-	-	-
CYP2D7P1	0	genome.wustl.edu	37	22	42536703	42536703	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	22	42536703	42536703	G	A	SNP	CYP2D7P1	ENST00000435101	human	ensembl	69_37n	-1	putative	missense	c.140	p.T47M	0.008	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2D7P1	HGNC	ENSG00000205702	91	0	0.00	63	11	14.86	-	-	-
DOCK10	0	genome.wustl.edu	37	2	225661753	225661753	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	2	225661753	225661753	G	C	SNP	DOCK10	ENST00000409802	human	ensembl	69_37n	-1	known	missense	c.931	p.P311A	0.930	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DOCK10	HGNC	ENSG00000135905	48	0	0.00	47	6	11.32	-	-	-
EFNB2	0	genome.wustl.edu	37	13	107145608	107145608	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	107145608	107145608	G	A	SNP	EFNB2	ENST00000245323	human	ensembl	69_37n	-1	known	missense	c.782	p.P261L	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266	49	0	0.00	54	7	11.48	-	-	-
FGF18	0	genome.wustl.edu	37	5	170883788	170883788	+	Silent	SNP	C	C	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	5	170883788	170883788	C	A	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	+1	known	silent	c.603	p.I201	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	12	0	0.00	10	4	28.57	-	-	-
FOXA1	0	genome.wustl.edu	37	14	38061463	38061463	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	14	38061463	38061463	T	C	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.526	p.I176V	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	51	0	0.00	53	7	11.67	-	-	-
KCNQ3	0	genome.wustl.edu	37	8	133142164	133142164	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	133142164	133142164	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	69_37n	-1	known	missense	c.1964	p.T655M	0.009	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	36	0	0.00	33	13	28.26	-	-	-
NHS	0	genome.wustl.edu	37	X	17705913	17705913	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	X	17705913	17705913	C	T	SNP	NHS	ENST00000380060	human	ensembl	69_37n	+1	known	missense	c.617	p.P206L	0.904	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	45	0	0.00	53	16	23.19	-	-	-
PCYT1A	0	genome.wustl.edu	37	3	195968901	195968901	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	195968901	195968901	A	C	SNP	PCYT1A	ENST00000292823	human	ensembl	69_37n	-1	known	missense	c.626	p.I209S	1.000	NULL	pfam_Cytidylyltransf,superfamily_NA-bd_OB-fold-like,tigrfam_Cyt_trans-rel	-	no_errors	PCYT1A	HGNC	ENSG00000161217	56	0	0.00	51	8	13.56	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0.00	44	11	20.00	-	-	-
PKHD1L1	0	genome.wustl.edu	37	8	110454342	110454342	+	Silent	SNP	T	T	C			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	8	110454342	110454342	T	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	+1	known	silent	c.4311	p.Y1437	0.842	superfamily_Cupredoxin	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	75	0	0.00	65	22	25.29	-	-	-
POLG	0	genome.wustl.edu	37	15	89876861	89876861	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	15	89876861	89876861	C	T	SNP	POLG	ENST00000268124	human	ensembl	69_37n	-1	known	missense	c.125	p.R42Q	0.003	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521	9	0	0.00	6	4	40.00	-	-	-
SENP1	0	genome.wustl.edu	37	12	48482684	48482684	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	12	48482684	48482684	C	T	SNP	SENP1	ENST00000004980	human	ensembl	69_37n	-1	known	missense	c.280	p.A94T	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387	130	0	0.00	99	30	23.26	-	-	-
SLC30A10	0	genome.wustl.edu	37	1	220091665	220091665	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	1	220091665	220091665	G	A	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.890	p.P297L	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	56	0	0.00	64	18	21.95	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	2	46707808	46707808	C	G	SNP	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	missense	c.382	p.Q128E	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	27	0	0.00	27	5	15.62	-	-	-
TUBGCP3	0	genome.wustl.edu	37	13	113212589	113212589	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	13	113212589	113212589	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	69_37n	-1	known	missense	c.469	p.V157M	0.021	NULL	pfam_Spc97_Spc98	-	no_errors	TUBGCP3	HGNC	ENSG00000126216	51	0	0.00	39	11	22.00	-	-	-
ZNF75A	0	genome.wustl.edu	37	16	3363109	3363109	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24O-01A-11D-A167-09	TCGA-AR-A24O-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2c9fc77f-951b-4764-911a-f0cff3174fb1	118ecd9e-4983-464f-921b-f12f91c40dbf	16	3363109	3363109	G	A	SNP	ZNF75A	ENST00000574298	human	ensembl	69_37n	+1	known	missense	c.34	p.D12N	0.981	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086	81	0	0.00	88	11	11.11	-	-	-
