Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD30BL	0	genome.wustl.edu	37	2	132905500	132905500	+	RNA	SNP	C	C	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	2	132905500	132905500	C	T	SNP	ANKRD30BL	ENST00000465868	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.349	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	8	0	0.00	2	6	75.00	-	-	-
CD47	0	genome.wustl.edu	37	3	107770938	107770938	+	RNA	SNP	T	T	A			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	107770938	107770938	T	A	SNP	CD47	ENST00000471694	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.083	-	-	-	no_errors	CD47	HGNC	ENSG00000196776	9	0	0.00	10	6	37.50	-	-	-
CDH1	0	genome.wustl.edu	37	16	68842432	68842432	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	16	68842432	68842432	G	C	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	missense	c.493	p.E165Q	1.000	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	56	0	0.00	25	6	19.35	-	-	-
CDH4	0	genome.wustl.edu	37	20	60485520	60485520	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	60485520	60485520	G	A	SNP	CDH4	ENST00000360469	human	ensembl	69_37n	+1	known	missense	c.1231	p.A411T	0.978	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242	20	0	0.00	16	5	23.81	-	-	-
DIP2C	0	genome.wustl.edu	37	10	373069	373069	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	10	373069	373069	C	T	SNP	DIP2C	ENST00000434695	human	ensembl	69_37n	-1	known	missense	c.217	p.G73R	0.088	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DIP2C	HGNC	ENSG00000151240	13	0	0.00	11	5	31.25	-	-	-
KLHL6	0	genome.wustl.edu	37	3	183225934	183225934	+	Silent	SNP	C	C	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	183225934	183225934	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.822	p.T274	0.850	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	51	0	0.00	36	4	10.00	-	-	-
LPCAT3	0	genome.wustl.edu	37	12	7087848	7087848	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	12	7087848	7087848	G	T	SNP	LPCAT3	ENST00000261407	human	ensembl	69_37n	-1	known	missense	c.790	p.H264N	0.026	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684	23	0	0.00	18	3	14.29	-	-	-
MUC4	0	genome.wustl.edu	37	3	195506303	195506303	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	195506303	195506303	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12148	p.P4050T	0.009	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	25	0	0.00	16	5	23.81	-	-	-
NKPD1	0	genome.wustl.edu	37	19	45662050	45662050	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	19	45662050	45662050	G	T	SNP	NKPD1	ENST00000317951	human	ensembl	69_37n	-1	known	missense	c.400	p.P134T	0.001	NULL	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846	35	0	0.00	21	4	16.00	-	-	-
NOP2	0	genome.wustl.edu	37	12	6677049	6677049	+	Silent	SNP	C	C	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	12	6677049	6677049	C	T	SNP	NOP2	ENST00000322166	human	ensembl	69_37n	-1	known	silent	c.36	p.R12	0.960	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	34	0	0.00	26	4	13.33	-	-	-
OR4F17	0	genome.wustl.edu	37	19	111016	111016	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	19	111016	111016	T	G	SNP	OR4F17	ENST00000318050	human	ensembl	69_37n	+1	known	missense	c.338	p.F113C	0.999	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F17	HGNC	ENSG00000176695	9	0	0.00	11	6	35.29	-	-	-
PCDHGA2	0	genome.wustl.edu	37	5	140720013	140720013	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	5	140720013	140720013	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	+1	known	missense	c.1475	p.A492V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	47	0	0.00	29	5	14.71	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	21	0	0.00	19	8	29.63	-	-	-
PRPF6	0	genome.wustl.edu	37	20	62626323	62626323	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	62626323	62626323	G	A	SNP	PRPF6	ENST00000266079	human	ensembl	69_37n	+1	known	missense	c.493	p.D165N	1.000	pfam_PRP1_N	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	34	0	0.00	24	6	20.00	-	-	-
PUM1	0	genome.wustl.edu	37	1	31478843	31478843	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	1	31478843	31478843	T	C	SNP	PUM1	ENST00000426105	human	ensembl	69_37n	-1	known	missense	c.577	p.R193G	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644	19	0	0.00	16	4	20.00	-	-	-
SYCP2	0	genome.wustl.edu	37	20	58491609	58491609	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A2LJ-01A-12D-A19Y-09	TCGA-AR-A2LJ-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ce74a42-4e07-4bb4-8c86-f24518d7152d	e1344996-bfac-4686-811b-4be7bbd84c50	20	58491609	58491609	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	69_37n	-1	known	nonsense	c.445	p.E149*	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	35	0	0.00	20	6	23.08	-	-	-
