Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AAAS	0	genome.wustl.edu	37	12	53714438	53714438	+	Silent	SNP	G	G	A			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	12	53714438	53714438	G	A	SNP	AAAS	ENST00000209873	human	ensembl	69_37n	-1	known	silent	c.162	p.P54	0.915	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914	143	0	0.00	112	65	36.72	-	-	-
ADCY7	0	genome.wustl.edu	37	16	50334752	50334753	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	16	50334752	50334753	GG	-	DEL	ADCY7	ENST00000254235	human	ensembl	69_37n	+1	known	frame_shift_del	c.1203_1204	p.A402fs	0.999:1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	109	0	0.00	62	46	42.59	-	-	-
C9orf43	0	genome.wustl.edu	37	9	116186580	116186580	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	9	116186580	116186580	A	G	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	+1	known	missense	c.791	p.H264R	0.870	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	199	0	0.00	152	75	32.89	-	-	-
CADM2	0	genome.wustl.edu	37	3	85008572	85008572	+	RNA	SNP	G	G	T			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	85008572	85008572	G	T	SNP	CADM2	ENST00000473523	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CADM2	HGNC	ENSG00000175161	61	0	0.00	27	12	30.00	-	-	-
CCDC94	0	genome.wustl.edu	37	19	4247167	4247167	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	19	4247167	4247167	C	-	DEL	CCDC94	ENST00000262962	human	ensembl	69_37n	+1	known	frame_shift_del	c.24	p.N8fs	1.000	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC94	HGNC	ENSG00000105248	148	0	0.00	218	121	35.17	-	-	-
FAM73B	0	genome.wustl.edu	37	9	131812165	131812166	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	9	131812165	131812166	-	G	INS	FAM73B	ENST00000358369	human	ensembl	69_37n	+1	known	frame_shift_ins	c.598_599	p.D202fs	0.991:0.981	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343	34	0	0.00	17	2	10.53	-	-	-
GNL2	0	genome.wustl.edu	37	1	38034775	38034775	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	38034775	38034775	G	C	SNP	GNL2	ENST00000373062	human	ensembl	69_37n	-1	known	missense	c.1545	p.H515Q	0.000	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697	169	0	0.00	113	48	29.81	-	-	-
HCN1	0	genome.wustl.edu	37	5	45396610	45396610	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	5	45396610	45396610	C	T	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	missense	c.1214	p.R405Q	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	102	0	0.00	89	44	33.08	-	-	-
KCNT2	0	genome.wustl.edu	37	1	196300389	196300389	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	196300389	196300389	T	C	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.2000	p.Y667C	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	134	0	0.00	97	227	70.06	-	-	-
KIAA1704	0	genome.wustl.edu	37	13	45580344	45580344	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	13	45580344	45580344	A	G	SNP	KIAA1704	ENST00000361121	human	ensembl	69_37n	+1	known	missense	c.229	p.R77G	0.982	NULL	pfam_DUF3752	-	no_errors	KIAA1704	HGNC	ENSG00000133114	83	0	0.00	87	47	35.07	-	-	-
LCTL	0	genome.wustl.edu	37	15	66853388	66853388	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	15	66853388	66853388	G	C	SNP	LCTL	ENST00000341509	human	ensembl	69_37n	-1	known	missense	c.661	p.L221V	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501	117	0	0.00	44	31	41.33	-	-	-
MAPKAPK3	0	genome.wustl.edu	37	3	50655079	50655080	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	50655079	50655080	-	G	INS	MAPKAPK3	ENST00000357955	human	ensembl	69_37n	+1	known	frame_shift_ins	c.83_84	p.R31fs	0.000:0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738	42	0	0.00	36	4	10.00	-	-	-
MRPL2	0	genome.wustl.edu	37	6	43022206	43022206	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	6	43022206	43022206	C	A	SNP	MRPL2	ENST00000388752	human	ensembl	69_37n	-1	known	missense	c.724	p.A242S	1.000	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold-like	-	no_errors	MRPL2	HGNC	ENSG00000112651	44	0	0.00	33	29	46.77	-	-	-
MUC4	0	genome.wustl.edu	37	3	195508115	195508115	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	195508115	195508115	T	G	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.10336	p.T3446P	0.077	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	12	0	0.00	16	5	22.73	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	92	0	0.00	111	46	29.30	-	-	-
RYR2	0	genome.wustl.edu	37	1	237955580	237955580	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	1	237955580	237955580	C	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	+1	known	missense	c.13757	p.T4586M	1.000	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	80	0	0.00	99	25	20.16	-	-	-
SHANK2	0	genome.wustl.edu	37	11	70332515	70332515	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	11	70332515	70332515	T	C	SNP	SHANK2	ENST00000338508	human	ensembl	69_37n	-1	known	missense	c.3886	p.K1296E	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	51	0	0.00	301	38	11.21	-	-	-
SORCS1	0	genome.wustl.edu	37	10	108337210	108337210	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	10	108337210	108337210	G	A	SNP	SORCS1	ENST00000263054	human	ensembl	69_37n	-1	known	missense	c.3475	p.R1159W	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	222	0	0.00	176	79	30.86	-	-	-
TRIM64B	0	genome.wustl.edu	37	11	89609144	89609144	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	11	89609144	89609144	A	C	SNP	TRIM64B	ENST00000329862	human	ensembl	69_37n	-1	known	missense	c.42	p.I14M	0.100	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM64B	HGNC	ENSG00000189253	104	0	0.00	92	32	25.81	-	-	-
UBR5	0	genome.wustl.edu	37	8	103298799	103298799	+	Silent	SNP	C	C	A			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	eba2178f-6235-49c1-a49e-98de8ffdc6a0	0558481f-51c7-4181-9032-e02c3e8e265d	8	103298799	103298799	C	A	SNP	UBR5	ENST00000520539	human	ensembl	69_37n	-1	known	silent	c.5004	p.S1668	0.976	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	220	2	0.90	169	130	43.33	-	-	-
