Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALCAM	0	genome.wustl.edu	37	3	105253613	105253613	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	3	105253613	105253613	C	T	SNP	ALCAM	ENST00000465413	human	ensembl	69_37n	+1	novel	missense	c.196	p.H66Y	0.998	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALCAM	HGNC	ENSG00000170017	138	0	0.00	123	19	13.38	-	-	-
ALCAM	0	genome.wustl.edu	37	3	105253613	105253613	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	3	105253613	105253613	C	T	SNP	ALCAM	ENST00000465413	human	ensembl	69_37n	+1	novel	missense	c.196	p.H66Y	0.998	pfam_CD80_C2-set,pfscan_Ig-like	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ALCAM	HGNC	ENSG00000170017	233	0	0.00	123	19	13.38	-	-	-
ALMS1P	0	genome.wustl.edu	37	2	73900111	73900111	+	RNA	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	73900111	73900111	C	T	SNP	ALMS1P	ENST00000450720	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALMS1P	HGNC	ENSG00000163016	89	0	0.00	83	14	14.43	-	-	-
ALMS1P	0	genome.wustl.edu	37	2	73900111	73900111	+	RNA	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	2	73900111	73900111	C	T	SNP	ALMS1P	ENST00000450720	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALMS1P	HGNC	ENSG00000163016	116	0	0.00	83	14	14.43	-	-	-
BMPER	0	genome.wustl.edu	37	7	34125684	34125684	+	Silent	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	7	34125684	34125684	G	A	SNP	BMPER	ENST00000297161	human	ensembl	69_37n	+1	known	silent	c.1725	p.V575	0.997	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619	115	0	0.00	103	35	25.18	-	-	-
CR2	0	genome.wustl.edu	37	1	207644142	207644142	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	207644142	207644142	G	C	SNP	CR2	ENST00000367057	human	ensembl	69_37n	+1	known	missense	c.1283	p.R428P	0.142	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	182	0	0.00	205	24	10.43	-	-	-
CR2	0	genome.wustl.edu	37	1	207644142	207644142	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	1	207644142	207644142	G	C	SNP	CR2	ENST00000367057	human	ensembl	69_37n	+1	known	missense	c.1283	p.R428P	0.142	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322	282	0	0.00	205	24	10.43	-	-	-
DNAH1	0	genome.wustl.edu	37	3	52402833	52402833	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	3	52402833	52402833	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	+1	known	missense	c.5842	p.D1948N	1.000	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	79	0	0.00	65	19	22.62	-	-	-
DNAH1	0	genome.wustl.edu	37	3	52402833	52402833	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	3	52402833	52402833	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	+1	known	missense	c.5842	p.D1948N	1.000	pfam_ATPase_dyneun-rel_AAA	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	154	0	0.00	65	19	22.62	-	-	-
DSCAML1	0	genome.wustl.edu	37	11	117351189	117351189	+	Silent	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	117351189	117351189	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.2934	p.T978	0.738	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	89	0	0.00	80	19	19.19	-	-	-
DSCAML1	0	genome.wustl.edu	37	11	117351189	117351189	+	Silent	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	11	117351189	117351189	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	silent	c.2934	p.T978	0.738	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	134	0	0.00	80	19	19.19	-	-	-
DSG3	0	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	29041208	29041208	G	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	+1	known	nonsense	c.832	p.E278*	0.950	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	137	0	0.00	74	15	16.85	-	-	-
DSG3	0	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	18	29041208	29041208	G	T	SNP	DSG3	ENST00000257189	human	ensembl	69_37n	+1	known	nonsense	c.832	p.E278*	0.950	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmo_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757	174	0	0.00	74	15	16.85	-	-	-
FBN3	0	genome.wustl.edu	37	19	8201277	8201277	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	8201277	8201277	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.1340	p.C447Y	1.000	smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	43	0	0.00	46	7	13.21	-	-	-
GRIN2B	0	genome.wustl.edu	37	12	13716941	13716941	+	Silent	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	12	13716941	13716941	G	A	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	silent	c.3231	p.A1077	0.015	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	147	0	0.00	101	29	22.31	-	-	-
HSPBP1	0	genome.wustl.edu	37	19	55790902	55790902	+	Silent	SNP	C	C	G			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	55790902	55790902	C	G	SNP	HSPBP1	ENST00000255631	human	ensembl	69_37n	-1	known	silent	c.75	p.G25	0.327	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265	10	0	0.00	5	4	44.44	-	-	-
IFT172	0	genome.wustl.edu	37	2	27667302	27667302	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	27667302	27667302	C	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.5247	p.Q1749H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	70	0	0.00	49	9	15.52	-	-	-
IFT172	0	genome.wustl.edu	37	2	27667302	27667302	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	2	27667302	27667302	C	A	SNP	IFT172	ENST00000260570	human	ensembl	69_37n	-1	known	missense	c.5247	p.Q1749H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	99	1	0.99	49	9	15.52	-	-	-
NTNG1	0	genome.wustl.edu	37	1	107691296	107691296	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	107691296	107691296	G	T	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	+1	known	missense	c.81	p.W27C	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	279	0	0.00	254	58	18.59	-	-	-
NTNG1	0	genome.wustl.edu	37	1	107691296	107691296	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	1	107691296	107691296	G	T	SNP	NTNG1	ENST00000370068	human	ensembl	69_37n	+1	known	missense	c.81	p.W27C	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	486	0	0.00	254	58	18.59	-	-	-
PKNOX2	0	genome.wustl.edu	37	11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	125237868	125237868	C	T	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	+1	known	nonsense	c.214	p.R72*	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	78	0	0.00	62	21	25.30	-	-	-
PKNOX2	0	genome.wustl.edu	37	11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	11	125237868	125237868	C	T	SNP	PKNOX2	ENST00000298282	human	ensembl	69_37n	+1	known	nonsense	c.214	p.R72*	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PKNOX2	HGNC	ENSG00000165495	99	0	0.00	62	21	25.30	-	-	-
POM121	0	genome.wustl.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	-	CTC			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	7	72413723	72413724	-	CTC	INS	POM121	ENST00000434423	human	ensembl	69_37n	+1	known	in_frame_ins	c.3191_3192	p.1065in_frame_insS	0.980:0.870	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	32	0	0.00	42	6	12.50	-	-	-
SLC27A5	0	genome.wustl.edu	37	19	59010502	59010502	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	59010502	59010502	C	T	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	missense	c.1753	p.V585M	0.988	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	57	0	0.00	35	11	23.91	-	-	-
SLC45A1	0	genome.wustl.edu	37	1	8390663	8390663	+	Silent	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	8390663	8390663	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	+1	known	silent	c.1212	p.T404	0.941	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	28	0	0.00	45	7	13.46	-	-	-
SLC45A1	0	genome.wustl.edu	37	1	8390663	8390663	+	Silent	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	1	8390663	8390663	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	+1	known	silent	c.1212	p.T404	0.941	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	58	0	0.00	45	7	13.46	-	-	-
SUSD4	0	genome.wustl.edu	37	1	223400952	223400952	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	223400952	223400952	C	T	SNP	SUSD4	ENST00000343846	human	ensembl	69_37n	-1	known	missense	c.1045	p.A349T	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	93	0	0.00	120	16	11.51	-	-	-
TCTN1	0	genome.wustl.edu	37	12	111064227	111064227	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	12	111064227	111064227	C	A	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	+1	known	missense	c.402	p.N134K	0.967	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	230	0	0.00	94	16	14.55	-	-	-
TCTN1	0	genome.wustl.edu	37	12	111064227	111064227	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	12	111064227	111064227	C	A	SNP	TCTN1	ENST00000397659	human	ensembl	69_37n	+1	known	missense	c.402	p.N134K	0.967	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852	251	0	0.00	94	16	14.55	-	-	-
VPS13D	0	genome.wustl.edu	37	1	12405462	12405462	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	12405462	12405462	C	A	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	+1	novel	nonsense	c.5382	p.C1794*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	224	0	0.00	192	46	19.33	-	-	-
VPS13D	0	genome.wustl.edu	37	1	12405462	12405462	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	1	12405462	12405462	C	A	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	+1	novel	nonsense	c.5382	p.C1794*	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	398	1	0.25	192	46	19.33	-	-	-
VPS4B	0	genome.wustl.edu	37	18	61067316	61067316	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	61067316	61067316	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.755	p.R252H	0.980	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	139	0	0.00	67	14	17.28	-	-	-
VPS4B	0	genome.wustl.edu	37	18	61067316	61067316	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	18	61067316	61067316	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	69_37n	-1	known	missense	c.755	p.R252H	0.980	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	172	1	0.58	67	14	17.28	-	-	-
WDPCP	0	genome.wustl.edu	37	2	63714608	63714608	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	63714608	63714608	G	A	SNP	WDPCP	ENST00000272321	human	ensembl	69_37n	-1	known	nonsense	c.181	p.Q61*	1.000	NULL	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951	91	0	0.00	38	10	20.83	-	-	-
WDPCP	0	genome.wustl.edu	37	2	63714608	63714608	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	2	63714608	63714608	G	A	SNP	WDPCP	ENST00000272321	human	ensembl	69_37n	-1	known	nonsense	c.181	p.Q61*	1.000	NULL	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951	100	0	0.00	38	10	20.83	-	-	-
ZFHX3	0	genome.wustl.edu	37	16	72923665	72923665	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	828c2886-4775-457c-a276-b7825c65d67a	16	72923665	72923665	A	T	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	missense	c.3413	p.I1138N	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	93	0	0.00	44	11	20.00	-	-	-
ZMYND8	0	genome.wustl.edu	37	20	45867613	45867613	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	20	45867613	45867613	A	C	SNP	ZMYND8	ENST00000536340	human	ensembl	69_37n	-1	known	missense	c.2575	p.W859G	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	19	0	0.00	15	5	25.00	-	-	-
