Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BMPR1B	0	genome.wustl.edu	37	4	96045009	96045012	+	Frame_Shift_Del	DEL	CTGT	CTGT	-			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	4	96045009	96045012	CTGT	-	DEL	BMPR1B	ENST00000440890	human	ensembl	69_37n	+1	known	frame_shift_del	c.488_491	p.C165fs	0.999:0.839:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	BMPR1B	HGNC	ENSG00000138696	557	0	0.00	244	131	34.38	-	-	-
CACNA1C	0	genome.wustl.edu	37	12	2800326	2800326	+	Silent	SNP	G	G	A			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	12	2800326	2800326	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	+1	known	silent	c.6591	p.E2197	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	62	0	0.00	33	6	15.00	-	-	-
CBFB	0	genome.wustl.edu	37	16	67063313	67063313	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	16	67063313	67063313	G	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	missense	c.3	p.M1I	1.000	pfam_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	13	0	0.00	10	7	41.18	-	-	-
DNAH6	0	genome.wustl.edu	37	2	84784910	84784910	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	2	84784910	84784910	C	T	SNP	DNAH6	ENST00000237449	human	ensembl	69_37n	+1	known	missense	c.1654	p.P552S	0.998	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423	291	1	0.34	151	55	26.70	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	214	0	0	151	36	19.15	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56160697	56160700	+	Frame_Shift_Del	DEL	CTAA	CTAA	-			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTAA	CTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	56160697	56160700	CTAA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.971_974	p.N325fs	1.000:1.000:1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	286	0	0.00	210	33	13.47	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56161690	56161691	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	56161690	56161691	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.1187_1188	p.S397fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	325	0	0.00	198	69	25.84	-	-	-
MTA3	0	genome.wustl.edu	37	2	42909567	42909567	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	2	42909567	42909567	A	C	SNP	MTA3	ENST00000405094	human	ensembl	69_37n	+1	known	missense	c.729	p.R243S	0.960	pfscan_ELM2_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	375	0	0.00	216	72	25.00	-	-	-
NOL10	0	genome.wustl.edu	37	2	10729809	10729809	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	2	10729809	10729809	A	T	SNP	NOL10	ENST00000381685	human	ensembl	69_37n	-1	known	missense	c.1491	p.D497E	0.982	pfam_NUC153	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761	296	0	0.00	184	64	25.60	-	-	-
NUP155	0	genome.wustl.edu	37	5	37314414	37314414	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	37314414	37314414	T	G	SNP	NUP155	ENST00000231498	human	ensembl	69_37n	-1	known	missense	c.2322	p.E774D	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	144	0	0.00	92	34	26.98	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	220	0	0.00	155	60	27.91	-	-	-
RNF180	0	genome.wustl.edu	37	5	63510190	63510190	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	5	63510190	63510190	C	T	SNP	RNF180	ENST00000389100	human	ensembl	69_37n	+1	known	missense	c.1037	p.S346L	0.003	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197	138	0	0.00	95	29	23.39	-	-	-
RPAP3	0	genome.wustl.edu	37	12	48091472	48091472	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	12	48091472	48091472	C	A	SNP	RPAP3	ENST00000005386	human	ensembl	69_37n	-1	known	missense	c.325	p.D109Y	0.981	NULL	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175	267	0	0.00	206	59	22.26	-	-	-
SH2D5	0	genome.wustl.edu	37	1	21048381	21048381	+	Silent	SNP	G	G	A			TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	30dbe353-86d5-40ed-84c2-dbddf7beb17b	03c623e2-04d7-43ea-ade1-5f5a619cd5c8	1	21048381	21048381	G	A	SNP	SH2D5	ENST00000444387	human	ensembl	69_37n	-1	known	silent	c.1176	p.Y392	0.571	pfscan_SH2	pfam_PTyr_interaction_dom,smart_PTyr_interaction_dom,pfscan_PTyr_interaction_dom,pfscan_SH2	-	no_errors	SH2D5	HGNC	ENSG00000189410	29	0	0.00	25	4	13.79	-	-	-
