Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BACH1	0	genome.wustl.edu	37	21	30699316	30699316	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	21	30699316	30699316	C	T	SNP	BACH1	ENST00000286800	human	ensembl	69_37n	+1	known	nonsense	c.1171	p.R391*	0.901	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273	94	0	0.00	140	87	38.16	-	-	-
CHST11	0	genome.wustl.edu	37	12	105150939	105150939	+	Silent	SNP	C	C	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	12	105150939	105150939	C	T	SNP	CHST11	ENST00000303694	human	ensembl	69_37n	+1	known	silent	c.417	p.T139	0.051	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	78	0	0.00	72	23	24.21	-	-	-
DLL1	0	genome.wustl.edu	37	6	170594673	170594674	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	6	170594673	170594674	-	C	INS	DLL1	ENST00000366756	human	ensembl	69_37n	-1	known	frame_shift_ins	c.846_845	p.L283fs	0.973:1.000	smart_EGF-like	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719	31	0	0.00	54	7	11.48	-	-	-
DOCK2	0	genome.wustl.edu	37	5	169127104	169127104	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	169127104	169127104	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	69_37n	+1	known	missense	c.1219	p.V407M	1.000	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c_dom,superfamily_ARM-type_fold,superfamily_Ferritin/RR-like,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	116	0	0.00	83	47	35.88	-	-	-
EFS	0	genome.wustl.edu	37	14	23829996	23829997	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	14	23829996	23829997	-	G	INS	EFS	ENST00000216733	human	ensembl	69_37n	-1	known	frame_shift_ins	c.65_64	p.Q22fs	1.000:1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842	20	0	0.00	21	3	12.50	-	-	-
ENTHD1	0	genome.wustl.edu	37	22	40161426	40161426	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	22	40161426	40161426	C	A	SNP	ENTHD1	ENST00000325157	human	ensembl	69_37n	-1	known	nonsense	c.1021	p.E341*	0.990	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177	154	0	0.00	136	54	28.42	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40408747	40408747	+	Silent	SNP	C	C	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	40408747	40408747	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.4092	p.L1364	0.827	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	60	0	0.00	84	49	36.84	-	-	-
FNDC3B	0	genome.wustl.edu	37	3	171851264	171851264	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	3	171851264	171851264	A	G	SNP	FNDC3B	ENST00000336824	human	ensembl	69_37n	+1	known	missense	c.115	p.I39V	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420	347	0	0.00	245	90	26.87	-	-	-
FOXD3	0	genome.wustl.edu	37	1	63789206	63789206	+	Silent	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	63789206	63789206	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	69_37n	+1	known	silent	c.477	p.Q159	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140	29	0	0.00	19	16	45.71	-	-	-
KCNJ12	0	genome.wustl.edu	37	17	21319230	21319230	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	17	21319230	21319230	G	C	SNP	KCNJ12	ENST00000331718	human	ensembl	69_37n	+1	known	missense	c.576	p.Q192H	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir_Cr2,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	13	0	0.00	20	17	45.95	-	-	-
KPRP	0	genome.wustl.edu	37	1	152732639	152732639	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	152732639	152732639	G	A	SNP	KPRP	ENST00000368773	human	ensembl	69_37n	+1	known	missense	c.575	p.G192D	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	168	0	0.00	307	81	20.61	-	-	-
LINGO1	0	genome.wustl.edu	37	15	77907821	77907821	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	77907821	77907821	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.428	p.S143N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	53	0	0.00	83	42	33.60	-	-	-
NDN	0	genome.wustl.edu	37	15	23931940	23931940	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	15	23931940	23931940	C	T	SNP	NDN	ENST00000331837	human	ensembl	69_37n	-1	known	missense	c.425	p.R142H	0.982	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	19	0	0.00	8	9	52.94	-	-	-
PHOX2B	0	genome.wustl.edu	37	4	41750604	41750605	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	4	41750604	41750605	-	A	INS	PHOX2B	ENST00000226382	human	ensembl	69_37n	-1	known	frame_shift_ins	c.24_23	p.L9fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132	28	0	0.00	85	17	16.67	-	-	-
PLCH1	0	genome.wustl.edu	37	3	155199887	155199888	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	3	155199887	155199888	TT	-	DEL	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	frame_shift_del	c.3952_3951	p.P1319fs	0.587:0.585	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	39	0	0.00	42	15	25.86	-	-	-
PLEC	0	genome.wustl.edu	37	8	145001190	145001190	+	Silent	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	8	145001190	145001190	G	A	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	silent	c.4311	p.A1437	0.996	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	19	0	0.00	18	5	21.74	-	-	-
POLR2J4	0	genome.wustl.edu	37	7	44056086	44056086	+	RNA	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	7	44056086	44056086	G	A	SNP	POLR2J4	ENST00000326391	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	POLR2J4	HGNC	ENSG00000214783	364	0	0.00	355	95	21.06	-	-	-
PRAMEF7	0	genome.wustl.edu	37	1	12980232	12980232	+	Silent	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	+1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	32	0	0.00	64	9	12.33	-	-	-
RAI14	0	genome.wustl.edu	37	5	34812309	34812309	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	5	34812309	34812309	A	C	SNP	RAI14	ENST00000515799	human	ensembl	69_37n	+1	known	missense	c.770	p.K257T	1.000	NULL	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560	399	0	0.00	270	130	32.50	-	-	-
SMCHD1	0	genome.wustl.edu	37	18	2747542	2747542	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	18	2747542	2747542	G	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	+1	known	missense	c.3824	p.R1275I	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	147	0	0.00	81	28	25.69	-	-	-
TMC4	0	genome.wustl.edu	37	19	54676772	54676772	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	19	54676772	54676772	G	A	SNP	TMC4	ENST00000301187	human	ensembl	69_37n	-1	known	missense	c.41	p.S14F	0.291	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608	46	0	0.00	63	19	23.17	-	-	-
ZAN	0	genome.wustl.edu	37	7	100390155	100390155	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	7	100390155	100390155	G	C	SNP	ZAN	ENST00000546292	human	ensembl	69_37n	+1	known	missense	c.7838	p.R2613P	0.995	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	10	0	0.00	17	9	34.62	-	-	-
ZBTB43	0	genome.wustl.edu	37	9	129595094	129595094	+	Silent	SNP	T	T	C			TCGA-BH-A0HO-01A-11W-A050-09	TCGA-BH-A0HO-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	354172e7-3e54-4ec4-88fa-fd7781cc86ae	32f59f61-3335-4cfe-93f3-5931705e312e	9	129595094	129595094	T	C	SNP	ZBTB43	ENST00000373457	human	ensembl	69_37n	+1	known	silent	c.306	p.S102	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155	41	0	0.00	78	41	34.45	-	-	-
