Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTA1	0	genome.wustl.edu	37	1	229567787	229567787	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	229567787	229567787	G	T	SNP	ACTA1	ENST00000366684	human	ensembl	69_37n	-1	known	missense	c.762	p.N254K	1.000	pfam_Actin-like,smart_Actin-like,prints_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTA1	HGNC	ENSG00000143632	67	0	0.00	34	20	37.04	-	-	-
DUSP6	0	genome.wustl.edu	37	12	89744753	89744753	+	Silent	SNP	A	A	G			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	89744753	89744753	A	G	SNP	DUSP6	ENST00000279488	human	ensembl	69_37n	-1	known	silent	c.450	p.N150	1.000	superfamily_Rhodanese-like_dom,pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP6	HGNC	ENSG00000139318	27	0	0.00	16	11	40.74	-	-	-
ELMOD1	0	genome.wustl.edu	37	11	107518302	107518302	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	107518302	107518302	G	C	SNP	ELMOD1	ENST00000265840	human	ensembl	69_37n	+1	known	missense	c.529	p.G177R	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD1	HGNC	ENSG00000110675	483	0	0.00	281	114	28.79	-	-	-
ENSG00000214970	0	genome.wustl.edu	37	17	10436640	10436640	+	Splice_Site	SNP	G	G	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	17	10436640	10436640	G	T	SNP	ENSG00000214970	ENST00000399342	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CTC-297N7.7	Clone_based_vega_gene	ENSG00000214970	305	0	0.00	179	59	24.79	-	-	-
FAM160A1	0	genome.wustl.edu	37	4	152571037	152571037	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	4	152571037	152571037	A	C	SNP	FAM160A1	ENST00000435205	human	ensembl	69_37n	+1	known	missense	c.1844	p.K615T	0.099	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A1	HGNC	ENSG00000164142	208	0	0.00	104	43	29.25	-	-	-
FER1L6	0	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125047696	125047696	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	+1	known	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814	106	0	0.00	48	27	36.00	-	-	-
FER1L6	0	genome.wustl.edu	37	8	125076805	125076805	+	Silent	SNP	A	A	G			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125076805	125076805	A	G	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	+1	known	silent	c.3546	p.G1182	0.000	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_ABC_transptrTM_dom_typ1,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	FER1L6	HGNC	ENSG00000214814	182	0	0.00	80	44	35.48	-	-	-
GPR63	0	genome.wustl.edu	37	6	97247418	97247418	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	97247418	97247418	T	C	SNP	GPR63	ENST00000229955	human	ensembl	69_37n	-1	known	missense	c.190	p.T64A	1.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218	261	0	0.00	121	82	40.20	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112687979	112687979	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	112687979	112687979	G	A	SNP	HECTD4	ENST00000377560	human	ensembl	69_37n	-1	known	missense	c.3403	p.R1135C	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	184	0	0.00	130	17	11.56	-	-	-
HIF3A	0	genome.wustl.edu	37	19	46815779	46815779	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	19	46815779	46815779	G	A	SNP	HIF3A	ENST00000472815	human	ensembl	69_37n	+1	putative	missense	c.811	p.G271S	1.000	pfam_PAS_fold_3,pfam_PAS_fold,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HIF3A	HGNC	ENSG00000124440	77	0	0.00	48	21	30.43	-	-	-
INHBE	0	genome.wustl.edu	37	12	57849486	57849486	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	57849486	57849486	A	C	SNP	INHBE	ENST00000266646	human	ensembl	69_37n	+1	known	missense	c.167	p.H56P	0.997	pfam_TGF-b_N,prints_Inhibin_betaC	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269	168	1	0.59	64	24	26.97	-	-	-
ITLN1	0	genome.wustl.edu	37	1	160850420	160850420	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	160850420	160850420	C	T	SNP	ITLN1	ENST00000326245	human	ensembl	69_37n	-1	known	missense	c.643	p.D215N	0.962	superfamily_Fibrinogen_a/b/g_C	superfamily_Fibrinogen_a/b/g_C	-	no_errors	ITLN1	HGNC	ENSG00000179914	237	0	0.00	110	75	40.32	-	-	-
KDM2A	0	genome.wustl.edu	37	11	67010479	67010479	+	Splice_Site	SNP	G	G	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	67010479	67010479	G	T	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	+1	known	splice_site	c.1480-1	e12-1	0.999	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	730	0	0.00	416	161	27.90	-	-	-
LRIG1	0	genome.wustl.edu	37	3	66431242	66431242	+	Silent	SNP	C	C	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	66431242	66431242	C	T	SNP	LRIG1	ENST00000273261	human	ensembl	69_37n	-1	known	silent	c.2814	p.V938	0.001	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG1	HGNC	ENSG00000144749	46	0	0.00	26	13	33.33	-	-	-
MTPAP	0	genome.wustl.edu	37	10	30602780	30602780	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	10	30602780	30602780	G	A	SNP	MTPAP	ENST00000358107	human	ensembl	69_37n	-1	known	nonsense	c.1897	p.R633*	0.999	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	203	0	0.00	136	40	22.73	-	-	-
NEDD9	0	genome.wustl.edu	37	6	11191135	11191135	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	11191135	11191135	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	69_37n	-1	known	missense	c.967	p.V323I	0.603	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859	78	0	0.00	57	32	35.96	-	-	-
PCDHB6	0	genome.wustl.edu	37	5	140532071	140532071	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	5	140532071	140532071	C	A	SNP	PCDHB6	ENST00000231136	human	ensembl	69_37n	+1	known	missense	c.2233	p.Q745K	0.965	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	219	1	0.45	142	74	34.26	-	-	-
PIEZO2	0	genome.wustl.edu	37	18	10855367	10855367	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	18	10855367	10855367	T	C	SNP	PIEZO2	ENST00000582913	human	ensembl	69_37n	-1	known	missense	c.901	p.N301D	0.206	NULL	NULL	-	no_errors	PIEZO2	HGNC	ENSG00000154864	185	0	0.00	137	36	20.81	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	276	1	0.36	167	93	35.77	-	-	-
PRKDC	0	genome.wustl.edu	37	8	48743255	48743255	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	48743255	48743255	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.8305	p.V2769I	0.995	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	145	0	0.00	74	40	35.09	-	-	-
SLC35G5	0	genome.wustl.edu	37	8	11188822	11188822	+	Silent	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	11188822	11188822	G	A	SNP	SLC35G5	ENST00000382435	human	ensembl	69_37n	+1	known	silent	c.207	p.S69	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710	395	3	0.75	190	108	35.76	-	-	-
SOX14	0	genome.wustl.edu	37	3	137483952	137483952	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	137483952	137483952	G	A	SNP	SOX14	ENST00000306087	human	ensembl	69_37n	+1	known	missense	c.326	p.G109D	1.000	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX14	HGNC	ENSG00000168875	66	0	0.00	31	18	36.00	-	-	-
UCP3	0	genome.wustl.edu	37	11	73717218	73717218	+	Silent	SNP	C	C	T			TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	73717218	73717218	C	T	SNP	UCP3	ENST00000314032	human	ensembl	69_37n	-1	known	silent	c.333	p.A111	0.000	superfamily_Mt_carrier_dom,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	UCP3	HGNC	ENSG00000175564	42	0	0.00	28	15	34.88	-	-	-
