Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C18orf1	0	genome.wustl.edu	37	18	13438301	13438301	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	18	13438301	13438301	C	A	SNP	C18orf1	ENST00000359446	human	ensembl	69_37n	+1	known	missense	c.99	p.N33K	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	C18orf1	HGNC	ENSG00000168675	70	0	0.00	42	40	48.78	-	-	-
CACNA1A	0	genome.wustl.edu	37	19	13370458	13370458	+	Silent	SNP	C	C	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	19	13370458	13370458	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	silent	c.4308	p.K1436	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	81	0	0.00	59	36	37.89	-	-	-
CCDC43	0	genome.wustl.edu	37	17	42766938	42766938	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	17	42766938	42766938	C	T	SNP	CCDC43	ENST00000315286	human	ensembl	69_37n	-1	known	missense	c.184	p.G62R	1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329	53	0	0.00	22	14	38.89	-	-	-
E2F1	0	genome.wustl.edu	37	20	32265318	32265318	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	20	32265318	32265318	G	A	SNP	E2F1	ENST00000343380	human	ensembl	69_37n	-1	known	missense	c.754	p.R252C	0.741	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412	53	0	0.00	42	26	38.24	-	-	-
INTS12	0	genome.wustl.edu	37	4	106604454	106604454	+	Silent	SNP	T	T	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	106604454	106604454	T	A	SNP	INTS12	ENST00000340139	human	ensembl	69_37n	-1	known	silent	c.825	p.G275	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785	38	0	0.00	5	11	68.75	-	-	-
ITGB2	0	genome.wustl.edu	37	21	46309941	46309941	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	21	46309941	46309941	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	69_37n	-1	known	missense	c.1609	p.D537N	0.998	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	30	0	0.00	21	18	46.15	-	-	-
KIF4A	0	genome.wustl.edu	37	X	69521827	69521827	+	Silent	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	X	69521827	69521827	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	69_37n	+1	known	silent	c.594	p.R198	0.999	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	148	0	0.00	63	46	42.20	-	-	-
LOXL2	0	genome.wustl.edu	37	8	23174487	23174487	+	Silent	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	8	23174487	23174487	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	69_37n	-1	known	silent	c.1611	p.Y537	0.001	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Lysyl_oxidase,prints_Srcr_rcpt	-	no_errors	LOXL2	HGNC	ENSG00000134013	43	0	0.00	14	15	51.72	-	-	-
LRRD1	0	genome.wustl.edu	37	7	91793911	91793911	+	Silent	SNP	T	T	C			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	7	91793911	91793911	T	C	SNP	LRRD1	ENST00000430130	human	ensembl	69_37n	-1	known	silent	c.606	p.S202	0.002	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_typical-subtyp,pfscan_Death	-	no_errors	LRRD1	HGNC	ENSG00000240720	51	0	0.00	17	13	43.33	-	-	-
MRPS18C	0	genome.wustl.edu	37	4	84377236	84377236	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	84377236	84377236	C	T	SNP	MRPS18C	ENST00000509970	human	ensembl	69_37n	+1	putative	missense	c.1	p.R1C	0.000	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MRPS18C	HGNC	ENSG00000163319	87	0	0.00	48	34	41.46	-	-	-
PCGF3	0	genome.wustl.edu	37	4	728744	728744	+	Missense_Mutation	SNP	A	A	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	4	728744	728744	A	T	SNP	PCGF3	ENST00000362003	human	ensembl	69_37n	+1	known	missense	c.134	p.Y45F	0.999	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619	31	0	0.00	16	12	40.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921548	178921548	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	178921548	178921548	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1030	p.V344M	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0.00	16	16	50.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0.00	31	36	53.73	-	-	-
RIC8A	0	genome.wustl.edu	37	11	208907	208908	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	11	208907	208908	TT	-	DEL	RIC8A	ENST00000325207	human	ensembl	69_37n	+1	known	frame_shift_del	c.53_54	p.I18fs	0.009:0.009	NULL	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	9	0	0.00	4	2	33.33	-	-	-
RPUSD4	0	genome.wustl.edu	37	11	126075478	126075478	+	Silent	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	11	126075478	126075478	G	A	SNP	RPUSD4	ENST00000298317	human	ensembl	69_37n	-1	known	silent	c.681	p.D227	0.493	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526	82	0	0.00	43	31	41.89	-	-	-
SARS	0	genome.wustl.edu	37	1	109774392	109774392	+	Missense_Mutation	SNP	A	A	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	1	109774392	109774392	A	T	SNP	SARS	ENST00000369923	human	ensembl	69_37n	+1	known	missense	c.731	p.D244V	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-synth_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_IIa_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-synth_IIa,tigrfam_Ser-tRNA-synth_IIa	-	no_errors	SARS	HGNC	ENSG00000031698	95	0	0.00	45	32	41.56	-	-	-
SH3KBP1	0	genome.wustl.edu	37	X	19764522	19764522	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	X	19764522	19764522	T	C	SNP	SH3KBP1	ENST00000397821	human	ensembl	69_37n	-1	known	missense	c.200	p.N67S	0.998	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010	217	0	0.00	97	76	43.68	-	-	-
SOS2	0	genome.wustl.edu	37	14	50623747	50623747	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	14	50623747	50623747	C	T	SNP	SOS2	ENST00000216373	human	ensembl	69_37n	-1	known	missense	c.2027	p.R676H	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485	126	0	0.00	54	33	37.93	-	-	-
TGS1	0	genome.wustl.edu	37	8	56698879	56698879	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	8	56698879	56698879	C	A	SNP	TGS1	ENST00000260129	human	ensembl	69_37n	+1	known	missense	c.422	p.S141Y	0.587	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	68	0	0.00	16	18	52.94	-	-	-
THUMPD3	0	genome.wustl.edu	37	3	9425945	9425945	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	3	9425945	9425945	G	A	SNP	THUMPD3	ENST00000345094	human	ensembl	69_37n	+1	known	missense	c.1285	p.E429K	1.000	pfam_RNA_methylase_dom	pfam_RNA_methylase_dom,pfam_THUMP,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD3	HGNC	ENSG00000134077	44	0	0.00	18	29	61.70	-	-	-
TRIM17	0	genome.wustl.edu	37	1	228596888	228596888	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A1JS-01A-11D-A13L-09	TCGA-D8-A1JS-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a9181d0-d3df-4791-99f0-4db076c22a3a	17253519-13c8-4fa7-a2e0-10173cd9f7db	1	228596888	228596888	G	C	SNP	TRIM17	ENST00000295033	human	ensembl	69_37n	-1	known	missense	c.868	p.L290V	0.998	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	69	0	0.00	33	38	52.78	-	-	-
