Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AMT	0	genome.wustl.edu	37	3	49455277	49455277	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49455277	49455277	A	T	SNP	AMT	ENST00000273588	human	ensembl	69_37n	-1	known	missense	c.1007	p.I336N	1.000	pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	pfam_GCV_T_N,pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	-	no_errors	AMT	HGNC	ENSG00000145020	37	0	0.00	35	19	35.19	-	-	-
ANKHD1	0	genome.wustl.edu	37	5	139862242	139862243	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	5	139862242	139862243	-	A	INS	ANKHD1	ENST00000297183	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1860_1861	p.I620fs	0.993:1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	326	0	0.00	272	104	27.66	-	-	-
ANKRD34A	0	genome.wustl.edu	37	1	145473655	145473655	+	Silent	SNP	C	C	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	145473655	145473655	C	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	+1	known	silent	c.327	p.H109	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	12	0	0.00	18	17	48.57	-	-	-
CBR1	0	genome.wustl.edu	37	21	37445117	37445117	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	21	37445117	37445117	G	T	SNP	CBR1	ENST00000290349	human	ensembl	69_37n	+1	known	missense	c.771	p.L257F	0.992	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR1	HGNC	ENSG00000159228	55	0	0.00	47	19	28.79	-	-	-
HOXA1	0	genome.wustl.edu	37	7	27134229	27134229	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	7	27134229	27134229	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	69_37n	-1	known	missense	c.838	p.R280C	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA1	HGNC	ENSG00000105991	150	0	0.00	172	71	29.22	-	-	-
KCNU1	0	genome.wustl.edu	37	8	36662741	36662741	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	8	36662741	36662741	G	C	SNP	KCNU1	ENST00000399881	human	ensembl	69_37n	+1	known	missense	c.406	p.D136H	0.936	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262	417	0	0.00	462	650	58.40	-	-	-
KIAA1279	0	genome.wustl.edu	37	10	70748750	70748750	+	Silent	SNP	T	T	C			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	10	70748750	70748750	T	C	SNP	KIAA1279	ENST00000361983	human	ensembl	69_37n	+1	known	silent	c.162	p.P54	0.000	NULL	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	35	0	0.00	24	11	31.43	-	-	-
MORC1	0	genome.wustl.edu	37	3	108819313	108819313	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	108819313	108819313	G	A	SNP	MORC1	ENST00000232603	human	ensembl	69_37n	-1	known	missense	c.265	p.R89W	0.974	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,superfamily_ATPase-like_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	316	0	0.00	311	109	25.95	-	-	-
MUC15	0	genome.wustl.edu	37	11	26584710	26584710	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	26584710	26584710	G	A	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	missense	c.878	p.T293M	0.048	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	163	0	0.00	131	53	28.80	-	-	-
PARP15	0	genome.wustl.edu	37	3	122296675	122296675	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	122296675	122296675	C	T	SNP	PARP15	ENST00000464300	human	ensembl	69_37n	+1	known	missense	c.161	p.S54F	0.002	NULL	pfam_A1pp,pfam_Poly(ADP-ribose)pol_cat_dom,smart_A1pp,pfscan_A1pp,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200	59	0	0.00	21	15	41.67	-	-	-
PBX4	0	genome.wustl.edu	37	19	19681029	19681029	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	19	19681029	19681029	A	G	SNP	PBX4	ENST00000251203	human	ensembl	69_37n	-1	known	missense	c.521	p.I174T	0.990	pfam_PBX	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX4	HGNC	ENSG00000105717	63	0	0.00	88	25	21.93	-	-	-
PDXDC1	0	genome.wustl.edu	37	16	15128373	15128373	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	16	15128373	15128373	G	-	DEL	PDXDC1	ENST00000396410	human	ensembl	69_37n	+1	known	frame_shift_del	c.1965	p.A656fs	0.823	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	PDXDC1	HGNC	ENSG00000179889	244	0	0.00	247	89	26.18	-	-	-
PNLIP	0	genome.wustl.edu	37	10	118313248	118313248	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	10	118313248	118313248	G	A	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	+1	known	missense	c.469	p.G157S	0.002	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	107	0	0.00	105	32	23.36	-	-	-
RAG2	0	genome.wustl.edu	37	11	36615502	36615502	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	36615502	36615502	G	A	SNP	RAG2	ENST00000311485	human	ensembl	69_37n	-1	known	missense	c.217	p.R73C	1.000	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_Znf_FYVE_PHD	-	no_errors	RAG2	HGNC	ENSG00000175097	338	0	0.00	357	101	22.00	-	-	-
SH3BP5L	0	genome.wustl.edu	37	1	249107351	249107351	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	249107351	249107351	G	A	SNP	SH3BP5L	ENST00000366472	human	ensembl	69_37n	-1	known	missense	c.548	p.A183V	1.000	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137	60	0	0.00	81	11	11.96	-	-	-
SLC19A1	0	genome.wustl.edu	37	21	46951971	46951971	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	21	46951971	46951971	G	A	SNP	SLC19A1	ENST00000311124	human	ensembl	69_37n	-1	known	missense	c.281	p.P94L	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	20	0	0.00	16	5	23.81	-	-	-
SLC47A2	0	genome.wustl.edu	37	17	19607404	19607404	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	17	19607404	19607404	C	T	SNP	SLC47A2	ENST00000325411	human	ensembl	69_37n	-1	known	missense	c.1105	p.V369I	0.000	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638	28	0	0.00	33	20	37.74	-	-	-
STRN3	0	genome.wustl.edu	37	14	31388247	31388247	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	14	31388247	31388247	G	C	SNP	STRN3	ENST00000357479	human	ensembl	69_37n	-1	known	missense	c.1165	p.P389A	1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN3	HGNC	ENSG00000196792	304	0	0.00	143	122	46.04	-	-	-
TYW3	0	genome.wustl.edu	37	1	75202299	75202299	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	1	75202299	75202299	A	T	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	+1	known	missense	c.248	p.D83V	1.000	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	136	0	0.00	87	22	20.18	-	-	-
UEVLD	0	genome.wustl.edu	37	11	18568489	18568489	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	11	18568489	18568489	G	C	SNP	UEVLD	ENST00000396197	human	ensembl	69_37n	-1	known	missense	c.824	p.A275G	0.965	pfam_Lactate/malate_DH_N	pfam_UEV_N,pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Lactate_DH/Glyco_Ohase_4_C,prints_L-lactate/malate_DH	-	no_errors	UEVLD	HGNC	ENSG00000151116	207	0	0.00	181	83	31.44	-	-	-
WDR6	0	genome.wustl.edu	37	3	49050454	49050454	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49050454	49050454	G	A	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	+1	known	missense	c.1577	p.C526Y	0.999	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	82	0	0.00	83	36	30.25	-	-	-
WDR6	0	genome.wustl.edu	37	3	49050455	49050455	+	Silent	SNP	C	C	T			TCGA-E2-A15F-01A-11D-A10Y-09	TCGA-E2-A15F-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33edf937-b09f-49ec-8f4c-e05dee7ece1f	282ccab4-f257-4ee5-832b-6b690291e6bb	3	49050455	49050455	C	T	SNP	WDR6	ENST00000395474	human	ensembl	69_37n	+1	known	silent	c.1578	p.C526	0.858	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252	82	0	0.00	84	35	29.41	-	-	-
