Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATP2B1	0	genome.wustl.edu	37	12	90018057	90018057	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	12	90018057	90018057	A	C	SNP	ATP2B1	ENST00000261173	human	ensembl	69_37n	-1	known	missense	c.1247	p.F416C	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B1	HGNC	ENSG00000070961	122	0	0.00	89	14	13.59	-	-	-
CDH11	0	genome.wustl.edu	37	16	65016151	65016151	+	Silent	SNP	G	G	A			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	16	65016151	65016151	G	A	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	silent	c.1053	p.N351	0.962	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	112	0	0.00	108	16	12.90	-	-	-
CHI3L1	0	genome.wustl.edu	37	1	203154335	203154335	+	Silent	SNP	G	G	C			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	1	203154335	203154335	G	C	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	silent	c.234	p.G78	0.016	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	82	0	0.00	89	37	29.37	-	-	-
FAT3	0	genome.wustl.edu	37	11	92533820	92533820	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	11	92533820	92533820	C	G	SNP	FAT3	ENST00000298047	human	ensembl	69_37n	+1	known	missense	c.7641	p.D2547E	0.576	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_Laminin_G,smart_EGF-like_Ca-bd,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	109	0	0.00	96	35	26.72	-	-	-
HLF	0	genome.wustl.edu	37	17	53345424	53345424	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	17	53345424	53345424	G	A	SNP	HLF	ENST00000226067	human	ensembl	69_37n	+1	known	missense	c.428	p.C143Y	1.000	NULL	pfam_bZIP_2,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924	58	0	0.00	33	52	61.18	-	-	-
MUC20	0	genome.wustl.edu	37	3	195345561	195345561	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	3	195345561	195345561	A	G	SNP	MUC20	ENST00000381954	human	ensembl	69_37n	+1	known	missense	c.34	p.T12A	0.007	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	8	0	0.00	1	4	80.00	-	-	-
NEDD4	0	genome.wustl.edu	37	15	56141078	56141078	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	15	56141078	56141078	G	A	SNP	NEDD4	ENST00000508342	human	ensembl	69_37n	-1	known	missense	c.2611	p.P871S	1.000	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	NEDD4	HGNC	ENSG00000069869	327	0	0.00	246	53	17.67	-	-	-
PHIP	0	genome.wustl.edu	37	6	79665349	79665351	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	6	79665349	79665351	TTC	-	DEL	PHIP	ENST00000275034	human	ensembl	69_37n	-1	known	in_frame_del	c.3833_3831	p.K1278in_frame_del	1.000:1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	171	0	0.00	75	11	12.64	-	-	-
PNLIP	0	genome.wustl.edu	37	10	118318677	118318677	+	Silent	SNP	C	C	T			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	10	118318677	118318677	C	T	SNP	PNLIP	ENST00000369221	human	ensembl	69_37n	+1	known	silent	c.942	p.F314	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pirsf_Lipoprotein_lipase_LIPH,pfscan_LipOase_LH2,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535	230	0	0.00	131	29	18.12	-	-	-
PTPN13	0	genome.wustl.edu	37	4	87728895	87728895	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	4	87728895	87728895	C	G	SNP	PTPN13	ENST00000436978	human	ensembl	69_37n	+1	known	missense	c.6943	p.Q2315E	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	147	0	0.00	120	15	11.11	-	-	-
TRIM74	0	genome.wustl.edu	37	7	72436307	72436307	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	7	72436307	72436307	C	T	SNP	TRIM74	ENST00000285805	human	ensembl	69_37n	-1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM74	HGNC	ENSG00000155428	11	0	0.00	9	4	30.77	-	-	-
TRIP12	0	genome.wustl.edu	37	2	230643194	230643194	+	Silent	SNP	G	G	A			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	2	230643194	230643194	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	69_37n	-1	known	silent	c.5094	p.R1698	0.997	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	220	0	0.00	176	30	14.56	-	-	-
UGGT2	0	genome.wustl.edu	37	13	96555315	96555315	+	Splice_Site	SNP	C	C	T			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	13	96555315	96555315	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	splice_site	c.2296-1	e21-1	1.000	-	-	-	no_errors	UGGT2	HGNC	ENSG00000102595	87	0	0.00	57	19	24.68	-	-	-
ZCCHC12	0	genome.wustl.edu	37	X	117959237	117959237	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1B1-01A-21D-A12Q-09	TCGA-E2-A1B1-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6e77a14-e5e5-452e-a46f-5629ee8228e3	6aec902b-6a2e-4cfa-b294-785057c147ef	X	117959237	117959237	C	G	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	+1	known	missense	c.30	p.N10K	0.081	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	84	0	0.00	56	10	15.15	-	-	-
