Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C6orf118	0	genome.wustl.edu	37	6	165715615	165715615	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	6	165715615	165715615	G	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.196	p.P66T	0.953	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	144	0	0.00	109	15	12.10	-	-	-
CASP8	0	genome.wustl.edu	37	2	202149683	202149683	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	2	202149683	202149683	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	+1	known	missense	c.1124	p.S375F	0.897	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	159	0	0.00	112	16	12.40	-	-	-
CHD4	0	genome.wustl.edu	37	12	6690307	6690307	+	Silent	SNP	A	A	G			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	12	6690307	6690307	A	G	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.4896	p.D1632	0.677	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	340	0	0.00	356	55	13.38	-	-	-
DHCR24	0	genome.wustl.edu	37	1	55331007	55331007	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	1	55331007	55331007	C	T	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.989	p.R330H	1.000	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	214	0	0.00	190	22	10.33	-	-	-
DPY19L2P1	0	genome.wustl.edu	37	7	35131356	35131357	+	RNA	DEL	TG	TG	-			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	7	35131356	35131357	TG	-	DEL	DPY19L2P1	ENST00000436258	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212	26	0	0.00	26	5	16.13	-	-	-
LINGO1	0	genome.wustl.edu	37	15	77907402	77907402	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	15	77907402	77907402	C	T	SNP	LINGO1	ENST00000355300	human	ensembl	69_37n	-1	known	missense	c.847	p.V283I	0.996	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO1	HGNC	ENSG00000169783	163	1	0.61	129	37	22.16	-	-	-
MUC12	0	genome.wustl.edu	37	7	100643078	100643078	+	Silent	SNP	A	A	C			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	7	100643078	100643078	A	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	silent	c.9663	p.T3221	0.001	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	21	0	0.00	44	9	16.98	-	-	-
PDE4A	0	genome.wustl.edu	37	19	10570300	10570300	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	19	10570300	10570300	C	G	SNP	PDE4A	ENST00000352831	human	ensembl	69_37n	+1	known	missense	c.1230	p.I410M	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989	30	0	0.00	21	4	16.00	-	-	-
PHF21B	0	genome.wustl.edu	37	22	45279150	45279150	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	22	45279150	45279150	C	T	SNP	PHF21B	ENST00000313237	human	ensembl	69_37n	-1	known	missense	c.1412	p.R471H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	37	0	0.00	32	5	13.51	-	-	-
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	50	0	0.00	43	6	12.24	-	-	-
ZNF618	0	genome.wustl.edu	37	9	116811102	116811102	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1B6-01A-31D-A12Q-09	TCGA-E2-A1B6-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1aaf88fc-f7cb-4239-a420-224352194160	409d90e2-1252-4a42-95d6-9625033b2c8f	9	116811102	116811102	G	T	SNP	ZNF618	ENST00000374126	human	ensembl	69_37n	+1	known	missense	c.1520	p.G507V	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657	56	0	0.00	48	7	12.73	-	-	-
