Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BRE	0	genome.wustl.edu	37	2	28521330	28521330	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	2	28521330	28521330	G	A	SNP	BRE	ENST00000344773	human	ensembl	69_37n	+1	known	missense	c.1060	p.D354N	1.000	NULL	pfam_Brain/reproduct-express_prot	-	no_errors	BRE	HGNC	ENSG00000158019	102	0	0.00	50	9	15.25	-	-	-
CCR2	0	genome.wustl.edu	37	3	46400009	46400009	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	46400009	46400009	C	T	SNP	CCR2	ENST00000445132	human	ensembl	69_37n	+1	known	nonsense	c.991	p.Q331*	0.980	prints_Chemokine_CCR2	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	70	0	0.00	30	22	42.31	-	-	-
CDC42EP1	0	genome.wustl.edu	37	22	37964419	37964419	+	Silent	SNP	T	T	C			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	22	37964419	37964419	T	C	SNP	CDC42EP1	ENST00000249014	human	ensembl	69_37n	+1	known	silent	c.768	p.A256	0.000	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	17	0	0.00	17	5	22.73	-	-	-
CNTNAP3	0	genome.wustl.edu	37	9	39103829	39103829	+	Silent	SNP	G	G	A			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	39103829	39103829	G	A	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	silent	c.2448	p.D816	0.993	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	55	0	0.00	28	4	12.50	-	-	-
DOLPP1	0	genome.wustl.edu	37	9	131848528	131848528	+	Missense_Mutation	SNP	T	T	G			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	131848528	131848528	T	G	SNP	DOLPP1	ENST00000372546	human	ensembl	69_37n	+1	known	missense	c.572	p.F191C	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DOLPP1	HGNC	ENSG00000167130	38	0	0.00	27	12	30.77	-	-	-
DUSP10	0	genome.wustl.edu	37	1	221912851	221912851	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	1	221912851	221912851	C	-	DEL	DUSP10	ENST00000366899	human	ensembl	69_37n	-1	known	frame_shift_del	c.236	p.S79fs	1.000	superfamily_Blood-coag_inhib_Disintegrin	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	53	0	0.00	31	7	17.95	-	-	-
FAM71E2	0	genome.wustl.edu	37	19	55874336	55874336	+	Splice_Site	SNP	G	G	A			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	55874336	55874336	G	A	SNP	FAM71E2	ENST00000585734	human	ensembl	69_37n	-1	known	splice_site	c.97+2	e1+2	1.000	-	-	-	no_errors	FAM71E2	HGNC	ENSG00000180043	32	0	0.00	27	5	15.62	-	-	-
FIP1L1	0	genome.wustl.edu	37	4	54319278	54319278	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	4	54319278	54319278	C	T	SNP	FIP1L1	ENST00000337488	human	ensembl	69_37n	+1	known	missense	c.1477	p.P493S	0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	71	0	0.00	44	7	13.73	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	10	8115874	8115875	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	60	0	0.00	34	11	24.44	-	-	-
KCNMB2	0	genome.wustl.edu	37	3	178560711	178560711	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	178560711	178560711	C	T	SNP	KCNMB2	ENST00000358316	human	ensembl	69_37n	+1	known	missense	c.694	p.R232W	0.930	NULL	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584	46	0	0.00	23	13	36.11	-	-	-
KIAA1239	0	genome.wustl.edu	37	4	37448092	37448092	+	Silent	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	4	37448092	37448092	C	T	SNP	KIAA1239	ENST00000309447	human	ensembl	69_37n	+1	known	silent	c.4482	p.I1494	0.006	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	KIAA1239	HGNC	ENSG00000174145	64	0	0.00	65	8	10.96	-	-	-
NTRK2	0	genome.wustl.edu	37	9	87285830	87285830	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	9	87285830	87285830	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	+1	known	missense	c.167	p.P56L	0.998	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	58	0	0.00	49	8	14.04	-	-	-
OR7C2	0	genome.wustl.edu	37	19	15052846	15052846	+	Silent	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	15052846	15052846	C	T	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	+1	known	silent	c.546	p.S182	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	244	0	0.00	154	21	12.00	-	-	-
PEG3	0	genome.wustl.edu	37	19	57328299	57328299	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	57328299	57328299	C	T	SNP	PEG3	ENST00000326441	human	ensembl	69_37n	-1	known	missense	c.1511	p.R504H	0.941	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	156	0	0.00	75	25	25.00	-	-	-
STARD8	0	genome.wustl.edu	37	X	67935135	67935135	+	Splice_Site	SNP	G	G	C			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	X	67935135	67935135	G	C	SNP	STARD8	ENST00000374599	human	ensembl	69_37n	+1	known	splice_site	c.152-1	e4-1	1.000	-	-	-	no_errors	STARD8	HGNC	ENSG00000130052	166	0	0.00	87	10	10.31	-	-	-
TCEB3B	0	genome.wustl.edu	37	18	44560939	44560939	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	18	44560939	44560939	C	G	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.697	p.E233Q	0.019	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	51	0	0.00	36	6	14.29	-	-	-
WDR11	0	genome.wustl.edu	37	10	122618231	122618231	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	10	122618231	122618231	A	G	SNP	WDR11	ENST00000263461	human	ensembl	69_37n	+1	known	missense	c.275	p.N92S	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008	119	0	0.00	52	27	34.18	-	-	-
XIRP1	0	genome.wustl.edu	37	3	39229655	39229655	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	3	39229655	39229655	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	69_37n	-1	known	missense	c.1282	p.A428T	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334	55	0	0.00	17	7	29.17	-	-	-
ZSCAN5B	0	genome.wustl.edu	37	19	56703240	56703240	+	Silent	SNP	G	G	A			TCGA-E9-A22D-01A-11D-A159-09	TCGA-E9-A22D-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3dfdc7fd-3f69-4297-a4cf-1a05b75d302f	08d6a08e-ed54-49c7-a413-cc442771eb34	19	56703240	56703240	G	A	SNP	ZSCAN5B	ENST00000358992	human	ensembl	69_37n	-1	known	silent	c.567	p.V189	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	42	0	0.00	25	5	16.67	-	-	-
